Multiple sequence alignment - TraesCS5A01G048500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G048500 chr5A 100.000 7048 0 0 1 7048 44604703 44597656 0.000000e+00 13016.0
1 TraesCS5A01G048500 chr5A 84.911 338 31 17 6479 6802 44576686 44576355 2.450000e-84 324.0
2 TraesCS5A01G048500 chr5A 86.111 180 14 8 6628 6805 44584501 44584331 4.340000e-42 183.0
3 TraesCS5A01G048500 chr5A 88.276 145 16 1 1432 1576 427853102 427852959 9.400000e-39 172.0
4 TraesCS5A01G048500 chr5A 87.500 136 10 6 6480 6609 44557768 44557634 4.400000e-32 150.0
5 TraesCS5A01G048500 chr5A 100.000 30 0 0 6855 6884 322220353 322220324 1.000000e-03 56.5
6 TraesCS5A01G048500 chr5D 93.068 2986 129 24 2234 5180 55850424 55847478 0.000000e+00 4296.0
7 TraesCS5A01G048500 chr5D 94.888 1291 59 7 681 1969 55851996 55850711 0.000000e+00 2012.0
8 TraesCS5A01G048500 chr5D 92.747 1103 39 15 5719 6805 55846979 55845902 0.000000e+00 1555.0
9 TraesCS5A01G048500 chr5D 87.631 477 17 13 195 648 55852450 55851993 3.770000e-142 516.0
10 TraesCS5A01G048500 chr5D 91.844 282 19 2 5325 5603 55847464 55847184 2.380000e-104 390.0
11 TraesCS5A01G048500 chr5D 96.729 214 7 0 6823 7036 55845915 55845702 2.420000e-94 357.0
12 TraesCS5A01G048500 chr5D 84.290 331 28 14 6480 6802 55829626 55829312 1.150000e-77 302.0
13 TraesCS5A01G048500 chr5D 92.670 191 10 4 1952 2140 296942206 296942018 9.010000e-69 272.0
14 TraesCS5A01G048500 chr5D 85.556 180 15 8 6628 6805 55837238 55837068 2.020000e-40 178.0
15 TraesCS5A01G048500 chr5D 83.178 214 13 3 9 201 55852687 55852476 2.610000e-39 174.0
16 TraesCS5A01G048500 chr5D 95.283 106 4 1 2129 2233 55850713 55850608 4.370000e-37 167.0
17 TraesCS5A01G048500 chr5D 79.535 215 21 10 6347 6539 55828446 55828233 1.600000e-26 132.0
18 TraesCS5A01G048500 chr5B 90.945 1999 104 30 3 1964 58569936 58567978 0.000000e+00 2617.0
19 TraesCS5A01G048500 chr5B 91.559 1860 105 18 2133 3974 58567971 58566146 0.000000e+00 2518.0
20 TraesCS5A01G048500 chr5B 91.694 1216 69 13 3974 5180 58566114 58564922 0.000000e+00 1657.0
21 TraesCS5A01G048500 chr5B 88.436 908 48 24 5719 6602 58564455 58563581 0.000000e+00 1042.0
22 TraesCS5A01G048500 chr5B 87.624 404 22 8 5325 5719 58564908 58564524 1.800000e-120 444.0
23 TraesCS5A01G048500 chr5B 93.269 208 11 2 6599 6805 58544204 58543999 3.190000e-78 303.0
24 TraesCS5A01G048500 chr5B 95.882 170 5 1 6845 7012 58543867 58543698 2.500000e-69 274.0
25 TraesCS5A01G048500 chr5B 95.349 86 3 1 5245 5329 426622517 426622432 1.230000e-27 135.0
26 TraesCS5A01G048500 chr5B 92.593 81 6 0 5245 5325 468875017 468874937 4.470000e-22 117.0
27 TraesCS5A01G048500 chr6A 98.788 165 2 0 1968 2132 537229318 537229482 1.920000e-75 294.0
28 TraesCS5A01G048500 chr6A 88.276 145 16 1 1432 1576 517539341 517539198 9.400000e-39 172.0
29 TraesCS5A01G048500 chr4B 98.788 165 2 0 1967 2131 518678305 518678141 1.920000e-75 294.0
30 TraesCS5A01G048500 chr6D 98.214 168 2 1 1968 2134 266773281 266773114 6.910000e-75 292.0
31 TraesCS5A01G048500 chr6D 89.333 150 11 4 5180 5325 430313975 430314123 4.340000e-42 183.0
32 TraesCS5A01G048500 chr3B 98.214 168 2 1 1964 2131 52743940 52744106 6.910000e-75 292.0
33 TraesCS5A01G048500 chr3B 96.045 177 6 1 1967 2142 428704038 428703862 3.220000e-73 287.0
34 TraesCS5A01G048500 chr3B 95.556 180 7 1 1961 2139 636249841 636250020 3.220000e-73 287.0
35 TraesCS5A01G048500 chr7D 97.619 168 4 0 1967 2134 163563478 163563645 8.950000e-74 289.0
36 TraesCS5A01G048500 chr7D 87.586 145 17 1 1432 1576 83435582 83435725 4.370000e-37 167.0
37 TraesCS5A01G048500 chr7D 87.586 145 17 1 1432 1576 292323708 292323851 4.370000e-37 167.0
38 TraesCS5A01G048500 chr4A 94.054 185 8 3 1959 2141 346686823 346687006 1.940000e-70 278.0
39 TraesCS5A01G048500 chr4A 87.162 148 17 2 5180 5325 630901415 630901268 4.370000e-37 167.0
40 TraesCS5A01G048500 chr2D 97.260 146 4 0 5180 5325 10160460 10160315 1.520000e-61 248.0
41 TraesCS5A01G048500 chr2D 88.276 145 16 1 1432 1576 89875811 89875668 9.400000e-39 172.0
42 TraesCS5A01G048500 chr1D 95.205 146 6 1 5180 5325 7701477 7701333 5.500000e-56 230.0
43 TraesCS5A01G048500 chr2B 88.276 145 16 1 1432 1576 142376992 142376849 9.400000e-39 172.0
44 TraesCS5A01G048500 chr2A 88.276 145 16 1 1432 1576 89490740 89490597 9.400000e-39 172.0
45 TraesCS5A01G048500 chr3D 87.248 149 16 2 5180 5325 144759758 144759610 4.370000e-37 167.0
46 TraesCS5A01G048500 chr3D 87.121 132 14 2 5180 5308 565688961 565688830 5.700000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G048500 chr5A 44597656 44604703 7047 True 13016.000 13016 100.0000 1 7048 1 chr5A.!!$R4 7047
1 TraesCS5A01G048500 chr5D 55845702 55852687 6985 True 1183.375 4296 91.9210 9 7036 8 chr5D.!!$R4 7027
2 TraesCS5A01G048500 chr5D 55828233 55829626 1393 True 217.000 302 81.9125 6347 6802 2 chr5D.!!$R3 455
3 TraesCS5A01G048500 chr5B 58563581 58569936 6355 True 1655.600 2617 90.0516 3 6602 5 chr5B.!!$R4 6599
4 TraesCS5A01G048500 chr5B 58543698 58544204 506 True 288.500 303 94.5755 6599 7012 2 chr5B.!!$R3 413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 422 0.036388 CTCTCAGCCGTGCCCTTTAA 60.036 55.000 0.00 0.00 0.00 1.52 F
362 425 0.179015 TCAGCCGTGCCCTTTAACAA 60.179 50.000 0.00 0.00 0.00 2.83 F
657 744 0.459489 TCTGGGTTTTTGCTGTGTGC 59.541 50.000 0.00 0.00 43.25 4.57 F
1982 2071 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.000 0.00 0.00 36.12 3.53 F
1983 2072 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53 F
1984 2073 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28 F
1985 2074 1.001181 CGTACTCCCTCCGTTCCAAAA 59.999 52.381 0.00 0.00 0.00 2.44 F
2879 3157 1.278985 CCATGCTCCTACCTGTTGTGA 59.721 52.381 0.00 0.00 0.00 3.58 F
3944 4235 2.216898 GCATGGCTAGGCTAGTTTCAG 58.783 52.381 21.92 10.25 0.00 3.02 F
4415 4758 2.086094 TCATTGCACTGTGATTGCGAT 58.914 42.857 12.86 0.00 43.66 4.58 F
5240 5588 0.095245 CGCATGGTGTAGTTTCTGCG 59.905 55.000 0.11 0.11 45.05 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1901 0.324943 ATGCTACAGCCGTGGAAAGT 59.675 50.000 0.00 0.00 41.18 2.66 R
1964 2053 0.540365 TTGGAACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 43.43 3.57 R
2115 2204 1.209747 GCAAATACTCCCTCCGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36 R
3912 4203 1.865865 AGCCATGCCGAATAAGTACG 58.134 50.000 0.00 0.00 0.00 3.67 R
4033 4356 8.352201 ACCATAACAAATATGATGTATGTGTGC 58.648 33.333 0.00 0.00 43.52 4.57 R
4050 4373 4.080582 ACTGCTAGCCACATACCATAACAA 60.081 41.667 13.29 0.00 0.00 2.83 R
4125 4448 8.846943 TCTGTTATGCTCTAAACAAATTCTCA 57.153 30.769 0.00 0.00 35.32 3.27 R
4228 4551 2.747446 CTCCAAATCGAACACGGGAATT 59.253 45.455 0.00 0.00 0.00 2.17 R
5144 5492 0.034477 AAATAAGAGCACCGGGTGGG 60.034 55.000 27.41 4.64 40.75 4.61 R
5283 5631 0.035152 TACGTTCTACTGCCGAGGGA 60.035 55.000 0.00 0.00 0.00 4.20 R
7021 7649 0.548510 GACCTCAAGGAAGGGATGGG 59.451 60.000 2.30 0.00 41.04 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 115 2.808543 ACATCTCAGAGTTTGTTTCGCC 59.191 45.455 0.00 0.00 0.00 5.54
116 120 4.038763 TCTCAGAGTTTGTTTCGCCTTCTA 59.961 41.667 0.00 0.00 0.00 2.10
190 214 2.426522 TGCCTCGTGAGAAAATTCCTG 58.573 47.619 0.00 0.00 41.32 3.86
209 266 1.351017 TGTCTTCAGGGCTAAACAGGG 59.649 52.381 0.00 0.00 0.00 4.45
251 313 2.691011 ACTTTATCGAGCCTCCTCTGTC 59.309 50.000 0.00 0.00 35.90 3.51
301 363 2.480419 CACTTCCAACTGTAAAGCGGAG 59.520 50.000 0.00 0.00 0.00 4.63
348 411 2.125350 CTTGCCGTCCTCTCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
359 422 0.036388 CTCTCAGCCGTGCCCTTTAA 60.036 55.000 0.00 0.00 0.00 1.52
360 423 0.321298 TCTCAGCCGTGCCCTTTAAC 60.321 55.000 0.00 0.00 0.00 2.01
361 424 0.605319 CTCAGCCGTGCCCTTTAACA 60.605 55.000 0.00 0.00 0.00 2.41
362 425 0.179015 TCAGCCGTGCCCTTTAACAA 60.179 50.000 0.00 0.00 0.00 2.83
363 426 0.671251 CAGCCGTGCCCTTTAACAAA 59.329 50.000 0.00 0.00 0.00 2.83
364 427 0.958822 AGCCGTGCCCTTTAACAAAG 59.041 50.000 0.00 0.00 38.24 2.77
365 428 0.671796 GCCGTGCCCTTTAACAAAGT 59.328 50.000 0.00 0.00 36.77 2.66
380 443 7.532682 TTAACAAAGTGGAATTCAACAAAGC 57.467 32.000 15.42 0.00 0.00 3.51
521 605 1.284785 GGGGGAGGTTCATGAATGACA 59.715 52.381 12.12 0.00 36.36 3.58
522 606 2.369394 GGGGAGGTTCATGAATGACAC 58.631 52.381 12.12 6.89 36.36 3.67
524 608 2.009774 GGAGGTTCATGAATGACACCG 58.990 52.381 12.12 0.00 40.11 4.94
551 635 3.742433 TTTGCCAACCACCTACAATTG 57.258 42.857 3.24 3.24 0.00 2.32
564 649 2.053865 CAATTGTGCCTGCCCCGAT 61.054 57.895 0.00 0.00 0.00 4.18
594 679 5.508825 GCTGGTGTGTAATCAACCATTTTGA 60.509 40.000 0.00 0.00 0.00 2.69
643 730 6.632909 TCATATTGCTTTCATGTTTTCTGGG 58.367 36.000 0.00 0.00 0.00 4.45
647 734 5.096443 TGCTTTCATGTTTTCTGGGTTTT 57.904 34.783 0.00 0.00 0.00 2.43
657 744 0.459489 TCTGGGTTTTTGCTGTGTGC 59.541 50.000 0.00 0.00 43.25 4.57
659 746 1.680735 CTGGGTTTTTGCTGTGTGCTA 59.319 47.619 0.00 0.00 43.37 3.49
672 760 5.404968 TGCTGTGTGCTAAAATATTTTGCAC 59.595 36.000 33.27 33.27 45.03 4.57
679 767 7.090173 GTGCTAAAATATTTTGCACTCCTTCA 58.910 34.615 32.99 15.37 43.52 3.02
776 865 7.254488 GCTGTAGCTTTTCAAGTATACTTAGGC 60.254 40.741 17.62 13.95 38.21 3.93
779 868 5.880887 AGCTTTTCAAGTATACTTAGGCCAC 59.119 40.000 17.62 7.16 34.28 5.01
784 873 7.859325 TTCAAGTATACTTAGGCCACATTTC 57.141 36.000 17.62 0.00 34.28 2.17
810 899 0.623723 TATCCAGCCTGTTTCCACCC 59.376 55.000 0.00 0.00 0.00 4.61
811 900 2.155197 ATCCAGCCTGTTTCCACCCC 62.155 60.000 0.00 0.00 0.00 4.95
824 913 2.688477 TCCACCCCTTTTGCATTCTTT 58.312 42.857 0.00 0.00 0.00 2.52
829 918 5.065235 CACCCCTTTTGCATTCTTTGATTT 58.935 37.500 0.00 0.00 0.00 2.17
832 921 5.764192 CCCCTTTTGCATTCTTTGATTTGAA 59.236 36.000 0.00 0.00 0.00 2.69
834 923 7.361457 CCCCTTTTGCATTCTTTGATTTGAATC 60.361 37.037 0.00 0.00 35.97 2.52
922 1011 5.291858 TCTCAAACGCTAATCTGTTATGCAG 59.708 40.000 0.00 0.00 46.34 4.41
928 1017 4.191544 GCTAATCTGTTATGCAGGTGTCA 58.808 43.478 0.00 0.00 45.08 3.58
930 1019 5.277683 GCTAATCTGTTATGCAGGTGTCATG 60.278 44.000 0.00 0.00 45.08 3.07
946 1035 8.986847 CAGGTGTCATGTTTAATGCAATTTTTA 58.013 29.630 0.00 0.00 37.87 1.52
986 1075 3.731652 TGTGTGAAAATTGCAGGGAAG 57.268 42.857 0.00 0.00 0.00 3.46
1113 1202 8.847196 AGAAACAAATTTCCTACCTACAAGAAC 58.153 33.333 0.00 0.00 44.66 3.01
1167 1256 2.435586 CCAGAAGTGCCGCCTCTG 60.436 66.667 0.00 0.00 0.00 3.35
1311 1400 3.329386 TCAGACCTTTGCATTCTTCTCG 58.671 45.455 0.00 0.00 0.00 4.04
1322 1411 3.369451 GCATTCTTCTCGAACAGACCTTC 59.631 47.826 0.00 0.00 33.72 3.46
1539 1628 2.039879 AGTCACGGGCAAAACTAAGGAT 59.960 45.455 0.00 0.00 0.00 3.24
1588 1677 8.429641 TGGTTGGTTTCTTCATATCCTATACTC 58.570 37.037 0.00 0.00 0.00 2.59
1594 1683 5.903923 TCTTCATATCCTATACTCCAGGCA 58.096 41.667 0.00 0.00 32.82 4.75
1609 1698 3.758554 TCCAGGCATTTTTCTTGTAGCTC 59.241 43.478 0.00 0.00 0.00 4.09
1622 1711 6.748333 TCTTGTAGCTCCATCTTTCATTTG 57.252 37.500 0.00 0.00 0.00 2.32
1658 1747 7.282585 TGCATCTAGTTATCATTAAAGCTGGT 58.717 34.615 0.00 0.00 0.00 4.00
1812 1901 7.093902 TGGTATGTTCCAGTTTGTTTGTTTACA 60.094 33.333 0.00 0.00 33.19 2.41
1820 1909 6.090223 CCAGTTTGTTTGTTTACACTTTCCAC 59.910 38.462 0.00 0.00 0.00 4.02
1821 1910 5.859648 AGTTTGTTTGTTTACACTTTCCACG 59.140 36.000 0.00 0.00 0.00 4.94
1896 1985 9.056306 CAGAATCTATGTACTCGAATAATGTCG 57.944 37.037 0.00 0.00 42.48 4.35
1970 2059 8.611654 ATTCACAACCAACTTAAATACGTACT 57.388 30.769 0.00 0.00 0.00 2.73
1971 2060 7.642071 TCACAACCAACTTAAATACGTACTC 57.358 36.000 0.00 0.00 0.00 2.59
1972 2061 6.646240 TCACAACCAACTTAAATACGTACTCC 59.354 38.462 0.00 0.00 0.00 3.85
1973 2062 5.934043 ACAACCAACTTAAATACGTACTCCC 59.066 40.000 0.00 0.00 0.00 4.30
1974 2063 6.168389 CAACCAACTTAAATACGTACTCCCT 58.832 40.000 0.00 0.00 0.00 4.20
1975 2064 5.970592 ACCAACTTAAATACGTACTCCCTC 58.029 41.667 0.00 0.00 0.00 4.30
1976 2065 5.105187 ACCAACTTAAATACGTACTCCCTCC 60.105 44.000 0.00 0.00 0.00 4.30
1977 2066 4.907879 ACTTAAATACGTACTCCCTCCG 57.092 45.455 0.00 0.00 0.00 4.63
1978 2067 4.273318 ACTTAAATACGTACTCCCTCCGT 58.727 43.478 0.00 0.00 38.53 4.69
1979 2068 4.706962 ACTTAAATACGTACTCCCTCCGTT 59.293 41.667 0.00 0.00 36.12 4.44
1980 2069 3.790152 AAATACGTACTCCCTCCGTTC 57.210 47.619 0.00 0.00 36.12 3.95
1981 2070 1.685148 ATACGTACTCCCTCCGTTCC 58.315 55.000 0.00 0.00 36.12 3.62
1982 2071 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.000 0.00 0.00 36.12 3.53
1983 2072 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53
1984 2073 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
1985 2074 1.001181 CGTACTCCCTCCGTTCCAAAA 59.999 52.381 0.00 0.00 0.00 2.44
1986 2075 2.354403 CGTACTCCCTCCGTTCCAAAAT 60.354 50.000 0.00 0.00 0.00 1.82
1987 2076 3.119029 CGTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
1988 2077 4.442472 CGTACTCCCTCCGTTCCAAAATAT 60.442 45.833 0.00 0.00 0.00 1.28
1989 2078 4.586306 ACTCCCTCCGTTCCAAAATATT 57.414 40.909 0.00 0.00 0.00 1.28
1990 2079 4.930696 ACTCCCTCCGTTCCAAAATATTT 58.069 39.130 0.00 0.00 0.00 1.40
1991 2080 4.705023 ACTCCCTCCGTTCCAAAATATTTG 59.295 41.667 0.39 0.00 0.00 2.32
1992 2081 4.668636 TCCCTCCGTTCCAAAATATTTGT 58.331 39.130 0.39 0.00 0.00 2.83
1993 2082 4.703093 TCCCTCCGTTCCAAAATATTTGTC 59.297 41.667 0.39 0.00 0.00 3.18
1994 2083 4.705023 CCCTCCGTTCCAAAATATTTGTCT 59.295 41.667 0.39 0.00 0.00 3.41
1995 2084 5.185056 CCCTCCGTTCCAAAATATTTGTCTT 59.815 40.000 0.39 0.00 0.00 3.01
1996 2085 6.295067 CCCTCCGTTCCAAAATATTTGTCTTT 60.295 38.462 0.39 0.00 0.00 2.52
1997 2086 6.806739 CCTCCGTTCCAAAATATTTGTCTTTC 59.193 38.462 0.39 0.00 0.00 2.62
1998 2087 7.309194 CCTCCGTTCCAAAATATTTGTCTTTCT 60.309 37.037 0.39 0.00 0.00 2.52
1999 2088 8.624367 TCCGTTCCAAAATATTTGTCTTTCTA 57.376 30.769 0.39 0.00 0.00 2.10
2000 2089 8.726988 TCCGTTCCAAAATATTTGTCTTTCTAG 58.273 33.333 0.39 0.00 0.00 2.43
2001 2090 7.968405 CCGTTCCAAAATATTTGTCTTTCTAGG 59.032 37.037 0.39 0.00 0.00 3.02
2002 2091 7.484959 CGTTCCAAAATATTTGTCTTTCTAGGC 59.515 37.037 0.39 0.00 0.00 3.93
2003 2092 8.303876 GTTCCAAAATATTTGTCTTTCTAGGCA 58.696 33.333 0.39 0.00 33.22 4.75
2004 2093 8.593945 TCCAAAATATTTGTCTTTCTAGGCAT 57.406 30.769 0.39 0.00 35.56 4.40
2005 2094 9.034800 TCCAAAATATTTGTCTTTCTAGGCATT 57.965 29.630 0.39 0.00 35.56 3.56
2006 2095 9.657419 CCAAAATATTTGTCTTTCTAGGCATTT 57.343 29.630 0.39 0.00 35.56 2.32
2012 2101 8.767478 ATTTGTCTTTCTAGGCATTTCAAATG 57.233 30.769 5.68 5.68 35.56 2.32
2013 2102 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
2014 2103 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
2015 2104 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
2016 2105 6.009589 TCTTTCTAGGCATTTCAAATGGACA 58.990 36.000 12.14 0.00 0.00 4.02
2017 2106 5.643379 TTCTAGGCATTTCAAATGGACAC 57.357 39.130 12.14 0.00 0.00 3.67
2018 2107 4.661222 TCTAGGCATTTCAAATGGACACA 58.339 39.130 12.14 0.00 0.00 3.72
2019 2108 5.076182 TCTAGGCATTTCAAATGGACACAA 58.924 37.500 12.14 0.00 0.00 3.33
2020 2109 3.993920 AGGCATTTCAAATGGACACAAC 58.006 40.909 12.14 0.00 0.00 3.32
2021 2110 3.387374 AGGCATTTCAAATGGACACAACA 59.613 39.130 12.14 0.00 0.00 3.33
2022 2111 4.040706 AGGCATTTCAAATGGACACAACAT 59.959 37.500 12.14 0.00 0.00 2.71
2023 2112 5.245751 AGGCATTTCAAATGGACACAACATA 59.754 36.000 12.14 0.00 0.00 2.29
2024 2113 5.348451 GGCATTTCAAATGGACACAACATAC 59.652 40.000 12.14 0.00 0.00 2.39
2025 2114 5.060816 GCATTTCAAATGGACACAACATACG 59.939 40.000 12.14 0.00 0.00 3.06
2026 2115 4.757799 TTCAAATGGACACAACATACGG 57.242 40.909 0.00 0.00 0.00 4.02
2027 2116 4.009370 TCAAATGGACACAACATACGGA 57.991 40.909 0.00 0.00 0.00 4.69
2028 2117 4.584874 TCAAATGGACACAACATACGGAT 58.415 39.130 0.00 0.00 0.00 4.18
2029 2118 4.394610 TCAAATGGACACAACATACGGATG 59.605 41.667 5.94 5.94 39.16 3.51
2031 2120 4.746535 ATGGACACAACATACGGATGTA 57.253 40.909 15.10 0.00 45.93 2.29
2032 2121 4.746535 TGGACACAACATACGGATGTAT 57.253 40.909 15.10 2.23 45.93 2.29
2071 2160 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2072 2161 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2073 2162 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2074 2163 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2075 2164 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2076 2165 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2077 2166 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2078 2167 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2079 2168 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2080 2169 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2081 2170 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2082 2171 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2083 2172 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2084 2173 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2085 2174 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2086 2175 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2087 2176 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2088 2177 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2089 2178 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2090 2179 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2091 2180 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2092 2181 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2093 2182 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2094 2183 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2095 2184 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
2096 2185 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2097 2186 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2098 2187 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2099 2188 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2100 2189 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2101 2190 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2102 2191 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2103 2192 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2104 2193 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2105 2194 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2106 2195 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2107 2196 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2108 2197 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2109 2198 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2122 2211 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2123 2212 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2124 2213 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2125 2214 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2126 2215 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2127 2216 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2143 2232 4.571176 CGGAGGGAGTATTTGCTTTCTTAC 59.429 45.833 0.00 0.00 0.00 2.34
2182 2272 1.304217 AGCATGCAGGAAAGCTGCT 60.304 52.632 21.98 1.99 46.95 4.24
2290 2565 3.942130 AAAGGGTGCAGTTTATTGCTC 57.058 42.857 0.00 0.00 44.38 4.26
2372 2647 9.929180 AGTTTTGAAAAGCTCTTAAAAGAACTT 57.071 25.926 3.15 3.15 41.75 2.66
2427 2702 5.981315 TCGGAGGTCGATTGAAAACATATAC 59.019 40.000 0.00 0.00 43.74 1.47
2436 2711 6.901887 CGATTGAAAACATATACAGACTGCAC 59.098 38.462 1.25 0.00 0.00 4.57
2450 2725 3.003480 GACTGCACATTCAGTTAGGGAC 58.997 50.000 0.00 0.00 46.40 4.46
2627 2904 2.774439 AAGTTTGTGTCGATGCAACC 57.226 45.000 0.00 0.00 0.00 3.77
2665 2942 9.538508 GGGAAGAAAATATACATTACTACACGT 57.461 33.333 0.00 0.00 0.00 4.49
2701 2978 1.323412 TGGCGGCTTGTGTAAATGTT 58.677 45.000 11.43 0.00 0.00 2.71
2783 3060 5.733676 TGCAATTAGTCAAGTGAGCATAGA 58.266 37.500 0.00 0.00 31.35 1.98
2874 3152 1.341156 GCTCCCATGCTCCTACCTGT 61.341 60.000 0.00 0.00 0.00 4.00
2879 3157 1.278985 CCATGCTCCTACCTGTTGTGA 59.721 52.381 0.00 0.00 0.00 3.58
3152 3433 6.164417 TGTTACTTACCAGTTACTGCAAGA 57.836 37.500 22.79 10.27 34.26 3.02
3188 3469 7.171678 AGTTCATACAGTGAAGCTTGTTTACTC 59.828 37.037 2.10 0.00 46.99 2.59
3192 3473 9.155975 CATACAGTGAAGCTTGTTTACTCTAAT 57.844 33.333 2.10 0.00 0.00 1.73
3246 3527 7.447374 TGTTGTTGCTTACTTGCTTACATAT 57.553 32.000 0.00 0.00 31.98 1.78
3294 3579 5.132502 TGGCTGAATTGGTACATAATCTGG 58.867 41.667 0.00 0.00 39.30 3.86
3318 3603 9.958180 TGGATAGTAATTCTGAAGATTTGTTCA 57.042 29.630 0.00 0.00 35.16 3.18
3472 3761 9.486497 TGCTGAGAAACATTGCATTTTTATTTA 57.514 25.926 0.00 0.00 0.00 1.40
3683 3974 3.904339 AGAAAGAAGTTAGAGTGGCCAGA 59.096 43.478 5.11 0.00 0.00 3.86
3797 4088 3.629398 CACATTCATTACTTCTCCAGGCC 59.371 47.826 0.00 0.00 0.00 5.19
3851 4142 5.687828 CGTAAGACGTTTACTGAGAAGTCT 58.312 41.667 14.41 0.00 40.22 3.24
3912 4203 3.125316 CGATGCCGGCCTAAGATATTTTC 59.875 47.826 26.77 0.00 0.00 2.29
3944 4235 2.216898 GCATGGCTAGGCTAGTTTCAG 58.783 52.381 21.92 10.25 0.00 3.02
4125 4448 7.009179 TCATCTGAAATACTTCCAGTGAGTT 57.991 36.000 0.00 0.00 0.00 3.01
4228 4551 6.031471 GCACAAAAGACTAAAAGGAAACGAA 58.969 36.000 0.00 0.00 0.00 3.85
4291 4614 6.480524 TCAATGCTACACATAGTTTGTCAC 57.519 37.500 0.00 0.00 38.34 3.67
4324 4647 7.178451 ACTCCCGTGGATTTTTCAAATATTTCT 59.822 33.333 0.00 0.00 0.00 2.52
4415 4758 2.086094 TCATTGCACTGTGATTGCGAT 58.914 42.857 12.86 0.00 43.66 4.58
4442 4785 8.189119 CCTAGAGGCATCTCTCTAATTACTTT 57.811 38.462 3.06 0.00 46.79 2.66
4639 4984 4.108699 TCGGCCAAGCATTTTAATCTTG 57.891 40.909 2.24 0.00 37.52 3.02
4871 5218 5.216566 TGTGCATCTCTTGTTTATTACGC 57.783 39.130 0.00 0.00 0.00 4.42
4888 5235 2.268298 ACGCGACTAACATAAGCTTGG 58.732 47.619 15.93 3.63 0.00 3.61
4982 5329 6.681729 TGTATGACCATACTATCCTTTCCC 57.318 41.667 17.81 0.00 43.04 3.97
5021 5368 5.717078 TCTAACTATACGCAATGTAGGGG 57.283 43.478 0.00 0.00 36.25 4.79
5031 5378 4.767928 ACGCAATGTAGGGGTTTCAATTTA 59.232 37.500 0.00 0.00 0.00 1.40
5062 5410 6.181908 TCTTGTGGTGTTTTTACTTGTACCT 58.818 36.000 0.00 0.00 0.00 3.08
5128 5476 4.516698 CAGTTCAAAGTTGTCATGCCTAGT 59.483 41.667 0.00 0.00 0.00 2.57
5141 5489 4.334759 TCATGCCTAGTAGTACTTGTCGTC 59.665 45.833 8.40 0.00 0.00 4.20
5144 5492 3.242252 GCCTAGTAGTACTTGTCGTCGTC 60.242 52.174 8.40 0.00 0.00 4.20
5193 5541 4.169696 CCACCGATGGGCCGCTTA 62.170 66.667 0.00 0.00 43.04 3.09
5194 5542 2.111043 CACCGATGGGCCGCTTAT 59.889 61.111 0.00 0.00 36.48 1.73
5195 5543 1.525995 CACCGATGGGCCGCTTATT 60.526 57.895 0.00 0.00 36.48 1.40
5196 5544 1.101049 CACCGATGGGCCGCTTATTT 61.101 55.000 0.00 0.00 36.48 1.40
5197 5545 0.818040 ACCGATGGGCCGCTTATTTC 60.818 55.000 0.00 0.00 36.48 2.17
5198 5546 0.817634 CCGATGGGCCGCTTATTTCA 60.818 55.000 0.00 0.00 0.00 2.69
5199 5547 1.021202 CGATGGGCCGCTTATTTCAA 58.979 50.000 0.00 0.00 0.00 2.69
5200 5548 1.608590 CGATGGGCCGCTTATTTCAAT 59.391 47.619 0.00 0.00 0.00 2.57
5201 5549 2.034558 CGATGGGCCGCTTATTTCAATT 59.965 45.455 0.00 0.00 0.00 2.32
5202 5550 3.490761 CGATGGGCCGCTTATTTCAATTT 60.491 43.478 0.00 0.00 0.00 1.82
5203 5551 3.518634 TGGGCCGCTTATTTCAATTTC 57.481 42.857 0.00 0.00 0.00 2.17
5204 5552 2.167487 TGGGCCGCTTATTTCAATTTCC 59.833 45.455 0.00 0.00 0.00 3.13
5205 5553 2.167487 GGGCCGCTTATTTCAATTTCCA 59.833 45.455 0.00 0.00 0.00 3.53
5206 5554 3.186909 GGCCGCTTATTTCAATTTCCAC 58.813 45.455 0.00 0.00 0.00 4.02
5207 5555 3.186909 GCCGCTTATTTCAATTTCCACC 58.813 45.455 0.00 0.00 0.00 4.61
5208 5556 3.367910 GCCGCTTATTTCAATTTCCACCA 60.368 43.478 0.00 0.00 0.00 4.17
5209 5557 4.423732 CCGCTTATTTCAATTTCCACCAG 58.576 43.478 0.00 0.00 0.00 4.00
5210 5558 4.157656 CCGCTTATTTCAATTTCCACCAGA 59.842 41.667 0.00 0.00 0.00 3.86
5211 5559 5.335127 CGCTTATTTCAATTTCCACCAGAG 58.665 41.667 0.00 0.00 0.00 3.35
5212 5560 5.105063 GCTTATTTCAATTTCCACCAGAGC 58.895 41.667 0.00 0.00 0.00 4.09
5213 5561 3.855689 ATTTCAATTTCCACCAGAGCG 57.144 42.857 0.00 0.00 0.00 5.03
5214 5562 2.559698 TTCAATTTCCACCAGAGCGA 57.440 45.000 0.00 0.00 0.00 4.93
5215 5563 2.559698 TCAATTTCCACCAGAGCGAA 57.440 45.000 0.00 0.00 0.00 4.70
5216 5564 2.857483 TCAATTTCCACCAGAGCGAAA 58.143 42.857 0.00 0.00 0.00 3.46
5217 5565 2.813754 TCAATTTCCACCAGAGCGAAAG 59.186 45.455 0.00 0.00 0.00 2.62
5229 5577 2.202388 CGAAAGCTGCGCATGGTG 60.202 61.111 12.24 0.00 0.00 4.17
5230 5578 2.956987 GAAAGCTGCGCATGGTGT 59.043 55.556 12.24 5.94 0.00 4.16
5231 5579 1.634757 CGAAAGCTGCGCATGGTGTA 61.635 55.000 12.24 0.00 0.00 2.90
5232 5580 0.097674 GAAAGCTGCGCATGGTGTAG 59.902 55.000 12.24 0.00 0.00 2.74
5233 5581 0.606401 AAAGCTGCGCATGGTGTAGT 60.606 50.000 12.24 0.00 0.00 2.73
5234 5582 0.606401 AAGCTGCGCATGGTGTAGTT 60.606 50.000 12.24 0.00 0.00 2.24
5235 5583 0.606401 AGCTGCGCATGGTGTAGTTT 60.606 50.000 12.24 0.00 0.00 2.66
5236 5584 0.179189 GCTGCGCATGGTGTAGTTTC 60.179 55.000 12.24 0.00 0.00 2.78
5237 5585 1.442769 CTGCGCATGGTGTAGTTTCT 58.557 50.000 12.24 0.00 0.00 2.52
5238 5586 1.129251 CTGCGCATGGTGTAGTTTCTG 59.871 52.381 12.24 0.00 0.00 3.02
5239 5587 0.179189 GCGCATGGTGTAGTTTCTGC 60.179 55.000 0.30 0.00 0.00 4.26
5240 5588 0.095245 CGCATGGTGTAGTTTCTGCG 59.905 55.000 0.11 0.11 45.05 5.18
5241 5589 1.438651 GCATGGTGTAGTTTCTGCGA 58.561 50.000 0.00 0.00 0.00 5.10
5242 5590 1.394917 GCATGGTGTAGTTTCTGCGAG 59.605 52.381 0.00 0.00 0.00 5.03
5243 5591 1.394917 CATGGTGTAGTTTCTGCGAGC 59.605 52.381 0.00 0.00 0.00 5.03
5244 5592 0.391228 TGGTGTAGTTTCTGCGAGCA 59.609 50.000 0.00 0.00 0.00 4.26
5245 5593 1.001974 TGGTGTAGTTTCTGCGAGCAT 59.998 47.619 0.00 0.00 0.00 3.79
5246 5594 1.661112 GGTGTAGTTTCTGCGAGCATC 59.339 52.381 0.00 0.00 0.00 3.91
5261 5609 3.812097 CATCGTTGGATGCGTGATG 57.188 52.632 0.00 0.18 43.26 3.07
5262 5610 0.305617 CATCGTTGGATGCGTGATGG 59.694 55.000 5.58 0.00 43.26 3.51
5263 5611 0.177836 ATCGTTGGATGCGTGATGGA 59.822 50.000 0.00 0.00 0.00 3.41
5264 5612 0.739462 TCGTTGGATGCGTGATGGAC 60.739 55.000 0.00 0.00 0.00 4.02
5272 5620 3.490759 CGTGATGGACGGTGCAGC 61.491 66.667 11.11 11.11 44.85 5.25
5273 5621 3.490759 GTGATGGACGGTGCAGCG 61.491 66.667 34.46 34.46 0.00 5.18
5274 5622 4.758251 TGATGGACGGTGCAGCGG 62.758 66.667 37.73 21.90 0.00 5.52
5291 5639 4.790861 GGAACGACGTCCCTCGGC 62.791 72.222 10.58 0.00 45.27 5.54
5297 5645 2.353958 ACGTCCCTCGGCAGTAGA 59.646 61.111 0.00 0.00 44.69 2.59
5298 5646 1.303888 ACGTCCCTCGGCAGTAGAA 60.304 57.895 0.00 0.00 44.69 2.10
5299 5647 1.139095 CGTCCCTCGGCAGTAGAAC 59.861 63.158 0.00 0.00 35.71 3.01
5300 5648 1.139095 GTCCCTCGGCAGTAGAACG 59.861 63.158 0.00 0.00 0.00 3.95
5301 5649 1.303888 TCCCTCGGCAGTAGAACGT 60.304 57.895 0.00 0.00 0.00 3.99
5302 5650 0.035152 TCCCTCGGCAGTAGAACGTA 60.035 55.000 0.00 0.00 0.00 3.57
5303 5651 0.100146 CCCTCGGCAGTAGAACGTAC 59.900 60.000 0.00 0.00 0.00 3.67
5304 5652 0.100146 CCTCGGCAGTAGAACGTACC 59.900 60.000 0.00 0.00 0.00 3.34
5305 5653 0.806868 CTCGGCAGTAGAACGTACCA 59.193 55.000 0.00 0.00 0.00 3.25
5306 5654 1.200716 CTCGGCAGTAGAACGTACCAA 59.799 52.381 0.00 0.00 0.00 3.67
5307 5655 1.200716 TCGGCAGTAGAACGTACCAAG 59.799 52.381 0.00 0.00 0.00 3.61
5308 5656 1.068055 CGGCAGTAGAACGTACCAAGT 60.068 52.381 0.00 0.00 0.00 3.16
5309 5657 2.603953 GGCAGTAGAACGTACCAAGTC 58.396 52.381 0.00 0.00 0.00 3.01
5310 5658 2.029649 GGCAGTAGAACGTACCAAGTCA 60.030 50.000 0.00 0.00 0.00 3.41
5311 5659 3.243336 GCAGTAGAACGTACCAAGTCAG 58.757 50.000 0.00 0.00 0.00 3.51
5312 5660 3.057736 GCAGTAGAACGTACCAAGTCAGA 60.058 47.826 0.00 0.00 0.00 3.27
5313 5661 4.724303 CAGTAGAACGTACCAAGTCAGAG 58.276 47.826 0.00 0.00 0.00 3.35
5314 5662 3.757493 AGTAGAACGTACCAAGTCAGAGG 59.243 47.826 0.00 0.00 0.00 3.69
5315 5663 2.872732 AGAACGTACCAAGTCAGAGGA 58.127 47.619 0.00 0.00 0.00 3.71
5316 5664 3.432378 AGAACGTACCAAGTCAGAGGAT 58.568 45.455 0.00 0.00 0.00 3.24
5317 5665 3.444388 AGAACGTACCAAGTCAGAGGATC 59.556 47.826 0.00 0.00 0.00 3.36
5346 5697 9.994432 GTTCCATATCTTGAACTATTGTTTCTG 57.006 33.333 0.00 0.00 38.24 3.02
5364 5715 2.373169 TCTGAAGTTCCCAATGCTCTGT 59.627 45.455 0.00 0.00 0.00 3.41
5469 5820 3.074412 GCGGATGAGACTTTCAAAAGGA 58.926 45.455 7.37 0.00 39.77 3.36
5525 5876 2.045536 GCAGGTAGGCTGCAGCTT 60.046 61.111 35.82 31.71 46.19 3.74
5527 5878 1.297689 CAGGTAGGCTGCAGCTTCA 59.702 57.895 35.82 19.41 41.70 3.02
5528 5879 0.321919 CAGGTAGGCTGCAGCTTCAA 60.322 55.000 35.82 14.11 41.70 2.69
5530 5881 0.807496 GGTAGGCTGCAGCTTCAAAG 59.193 55.000 35.82 0.00 41.70 2.77
5543 5894 3.263937 AGCTTCAAAGGCATCTTCTCTCT 59.736 43.478 0.00 0.00 31.82 3.10
5546 5897 5.490159 CTTCAAAGGCATCTTCTCTCTCTT 58.510 41.667 0.00 0.00 31.82 2.85
5589 5940 5.235516 GGACATGTTCTCTTTCTCGGTTAA 58.764 41.667 0.00 0.00 0.00 2.01
5603 5983 5.543714 TCTCGGTTAAACAGTATCTGCAAA 58.456 37.500 0.00 0.00 34.37 3.68
5604 5984 5.407387 TCTCGGTTAAACAGTATCTGCAAAC 59.593 40.000 0.00 0.27 34.37 2.93
5605 5985 5.057819 TCGGTTAAACAGTATCTGCAAACA 58.942 37.500 0.00 0.00 34.37 2.83
5606 5986 5.178623 TCGGTTAAACAGTATCTGCAAACAG 59.821 40.000 0.00 0.00 45.95 3.16
5620 6000 5.648178 TGCAAACAGATTACAATGCTCAT 57.352 34.783 0.00 0.00 34.97 2.90
5621 6001 6.028146 TGCAAACAGATTACAATGCTCATT 57.972 33.333 0.00 0.00 34.97 2.57
5622 6002 7.155655 TGCAAACAGATTACAATGCTCATTA 57.844 32.000 0.00 0.00 34.97 1.90
5626 6006 8.950961 CAAACAGATTACAATGCTCATTAATCG 58.049 33.333 10.21 8.75 33.88 3.34
5636 6016 2.611292 GCTCATTAATCGAAGCAGCTGT 59.389 45.455 16.64 0.00 0.00 4.40
5638 6018 4.585364 CTCATTAATCGAAGCAGCTGTTG 58.415 43.478 16.64 0.00 0.00 3.33
5641 6021 1.882912 AATCGAAGCAGCTGTTGTGA 58.117 45.000 16.64 11.31 0.00 3.58
5650 6030 6.968904 CGAAGCAGCTGTTGTGATATTATTTT 59.031 34.615 16.64 0.00 0.00 1.82
5653 6033 8.511604 AGCAGCTGTTGTGATATTATTTTACT 57.488 30.769 16.64 0.00 0.00 2.24
5654 6034 9.613428 AGCAGCTGTTGTGATATTATTTTACTA 57.387 29.630 16.64 0.00 0.00 1.82
5703 6092 9.767684 TCAATGAAATTTGCAATAACGTACTAG 57.232 29.630 0.00 0.00 31.22 2.57
5744 6199 3.797256 GCTATTGGCGTAACAGTAGTCTG 59.203 47.826 0.00 0.00 46.18 3.51
5745 6200 2.074547 TTGGCGTAACAGTAGTCTGC 57.925 50.000 0.00 0.00 44.77 4.26
5748 6203 1.469423 GGCGTAACAGTAGTCTGCCTC 60.469 57.143 0.00 0.00 44.77 4.70
5749 6204 1.473278 GCGTAACAGTAGTCTGCCTCT 59.527 52.381 0.00 0.00 44.77 3.69
5750 6205 2.478200 GCGTAACAGTAGTCTGCCTCTC 60.478 54.545 0.00 0.00 44.77 3.20
5751 6206 2.747989 CGTAACAGTAGTCTGCCTCTCA 59.252 50.000 0.00 0.00 44.77 3.27
5752 6207 3.426426 CGTAACAGTAGTCTGCCTCTCAC 60.426 52.174 0.00 0.00 44.77 3.51
5753 6208 2.294449 ACAGTAGTCTGCCTCTCACA 57.706 50.000 0.00 0.00 44.77 3.58
5754 6209 2.166829 ACAGTAGTCTGCCTCTCACAG 58.833 52.381 0.00 0.00 44.77 3.66
5755 6210 2.166829 CAGTAGTCTGCCTCTCACAGT 58.833 52.381 0.00 0.00 36.50 3.55
5760 6215 4.464069 AGTCTGCCTCTCACAGTATTTC 57.536 45.455 0.00 0.00 36.50 2.17
5943 6398 0.038159 GTACGTGCCTCAGCTTCAGT 60.038 55.000 0.00 0.00 40.80 3.41
5961 6416 5.023533 TCAGTTAGGAAGTGCATATCCAC 57.976 43.478 19.37 11.51 38.23 4.02
5963 6418 3.131396 GTTAGGAAGTGCATATCCACCG 58.869 50.000 19.37 0.00 38.23 4.94
5964 6419 0.179045 AGGAAGTGCATATCCACCGC 60.179 55.000 19.37 0.00 38.23 5.68
5968 6423 1.352083 AGTGCATATCCACCGCCTAT 58.648 50.000 0.00 0.00 36.38 2.57
5984 6450 3.885484 CCTATGACGTGGCATGATTTC 57.115 47.619 14.82 0.99 0.00 2.17
6026 6492 1.211212 CAGATCATCCTTGCAGGTCCA 59.789 52.381 0.00 0.00 36.53 4.02
6060 6526 4.373116 GGTGAAGGAGACGGCGCA 62.373 66.667 10.83 0.00 0.00 6.09
6103 6569 2.738480 CAAACTCCGGTCCGACCA 59.262 61.111 14.39 0.00 38.47 4.02
6319 6796 2.213499 GCGATATGTTGTTGCTAGGCT 58.787 47.619 0.00 0.00 0.00 4.58
6371 6848 5.333798 GCAACGACAGTTAGCTATGTTTGAA 60.334 40.000 12.82 0.00 38.79 2.69
6589 7077 2.417379 GCAAGTTGATAGAGCAGGTCGA 60.417 50.000 7.16 0.00 0.00 4.20
6611 7099 2.358898 GGCATGTATTAGTTGGTGCAGG 59.641 50.000 0.00 0.00 34.45 4.85
6633 7123 6.979238 CAGGCAAGTCACCTACTAATACTAAC 59.021 42.308 0.00 0.00 37.50 2.34
6757 7252 8.025445 ACCACTTTAGTGTATACTCTGTTTACG 58.975 37.037 15.99 4.27 44.21 3.18
6805 7304 3.243839 ACCATTTCAAGAATGCTGCGTTT 60.244 39.130 8.72 0.00 0.00 3.60
6806 7305 3.742369 CCATTTCAAGAATGCTGCGTTTT 59.258 39.130 8.72 0.00 0.00 2.43
6807 7306 4.376615 CCATTTCAAGAATGCTGCGTTTTG 60.377 41.667 8.72 13.72 0.00 2.44
6808 7307 3.435105 TTCAAGAATGCTGCGTTTTGT 57.565 38.095 8.72 0.00 0.00 2.83
6809 7308 3.435105 TCAAGAATGCTGCGTTTTGTT 57.565 38.095 8.72 0.76 0.00 2.83
6810 7309 4.560136 TCAAGAATGCTGCGTTTTGTTA 57.440 36.364 8.72 0.00 0.00 2.41
6811 7310 4.926244 TCAAGAATGCTGCGTTTTGTTAA 58.074 34.783 8.72 0.00 0.00 2.01
6812 7311 5.344066 TCAAGAATGCTGCGTTTTGTTAAA 58.656 33.333 8.72 0.00 0.00 1.52
6813 7312 5.807520 TCAAGAATGCTGCGTTTTGTTAAAA 59.192 32.000 8.72 0.00 0.00 1.52
6814 7313 6.311445 TCAAGAATGCTGCGTTTTGTTAAAAA 59.689 30.769 8.72 0.00 32.82 1.94
7036 7664 1.574526 CCAGCCCATCCCTTCCTTGA 61.575 60.000 0.00 0.00 0.00 3.02
7037 7665 0.106819 CAGCCCATCCCTTCCTTGAG 60.107 60.000 0.00 0.00 0.00 3.02
7038 7666 1.228510 GCCCATCCCTTCCTTGAGG 59.771 63.158 0.00 0.00 36.52 3.86
7040 7668 0.548510 CCCATCCCTTCCTTGAGGTC 59.451 60.000 0.00 0.00 34.88 3.85
7041 7669 1.589414 CCATCCCTTCCTTGAGGTCT 58.411 55.000 0.00 0.00 34.88 3.85
7042 7670 1.918957 CCATCCCTTCCTTGAGGTCTT 59.081 52.381 0.00 0.00 34.88 3.01
7043 7671 2.310052 CCATCCCTTCCTTGAGGTCTTT 59.690 50.000 0.00 0.00 34.88 2.52
7045 7673 1.073923 TCCCTTCCTTGAGGTCTTTGC 59.926 52.381 0.00 0.00 34.88 3.68
7046 7674 1.539157 CCTTCCTTGAGGTCTTTGCC 58.461 55.000 0.00 0.00 36.34 4.52
7047 7675 1.539157 CTTCCTTGAGGTCTTTGCCC 58.461 55.000 0.00 0.00 36.34 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 85 5.757320 ACAAACTCTGAGATGTGAAACTCTG 59.243 40.000 12.44 0.00 38.04 3.35
190 214 1.351350 ACCCTGTTTAGCCCTGAAGAC 59.649 52.381 0.00 0.00 0.00 3.01
200 257 3.057315 CACAGCATCCAAACCCTGTTTAG 60.057 47.826 0.00 0.00 36.47 1.85
209 266 6.313744 AGTAAAGTAACACAGCATCCAAAC 57.686 37.500 0.00 0.00 0.00 2.93
251 313 1.529226 TGTCCATTGTTGGTTAGGCG 58.471 50.000 0.00 0.00 44.06 5.52
301 363 4.142600 ACTTTATCAGCGAACAAGGCATTC 60.143 41.667 0.00 0.00 0.00 2.67
348 411 1.950909 TCCACTTTGTTAAAGGGCACG 59.049 47.619 6.30 0.00 40.63 5.34
359 422 4.111916 CGCTTTGTTGAATTCCACTTTGT 58.888 39.130 10.69 0.00 0.00 2.83
360 423 4.111916 ACGCTTTGTTGAATTCCACTTTG 58.888 39.130 10.69 2.69 0.00 2.77
361 424 4.385358 ACGCTTTGTTGAATTCCACTTT 57.615 36.364 10.69 0.00 0.00 2.66
362 425 4.385358 AACGCTTTGTTGAATTCCACTT 57.615 36.364 10.69 0.00 40.00 3.16
380 443 5.117897 ACAAACTGCTTTTTACAACACAACG 59.882 36.000 0.00 0.00 0.00 4.10
392 455 5.682943 TGATAGCGTAACAAACTGCTTTT 57.317 34.783 0.00 0.00 38.39 2.27
502 586 2.369394 GTGTCATTCATGAACCTCCCC 58.631 52.381 11.07 0.00 38.75 4.81
524 608 3.333029 AGGTGGTTGGCAAAATTATGC 57.667 42.857 0.00 0.00 45.67 3.14
551 635 1.077716 AAACTATCGGGGCAGGCAC 60.078 57.895 0.00 0.00 0.00 5.01
564 649 4.517453 GGTTGATTACACACCAGCAAACTA 59.483 41.667 0.00 0.00 32.01 2.24
594 679 3.185455 AGAGTAGGCCCTCACAAAGAAT 58.815 45.455 11.13 0.00 33.75 2.40
696 784 4.396478 GGTCTTATCTTTCAAGCAAGGGAC 59.604 45.833 0.00 0.00 0.00 4.46
697 785 4.589908 GGTCTTATCTTTCAAGCAAGGGA 58.410 43.478 0.00 0.00 0.00 4.20
701 789 4.894784 AGACGGTCTTATCTTTCAAGCAA 58.105 39.130 4.45 0.00 0.00 3.91
702 790 4.537135 AGACGGTCTTATCTTTCAAGCA 57.463 40.909 4.45 0.00 0.00 3.91
703 791 6.535508 ACATAAGACGGTCTTATCTTTCAAGC 59.464 38.462 30.88 0.00 44.03 4.01
762 850 7.807977 ATGAAATGTGGCCTAAGTATACTTG 57.192 36.000 25.27 15.53 37.40 3.16
768 857 5.630415 AGCTATGAAATGTGGCCTAAGTA 57.370 39.130 3.32 0.00 0.00 2.24
770 859 6.150140 GGATAAGCTATGAAATGTGGCCTAAG 59.850 42.308 3.32 0.00 0.00 2.18
784 873 4.686944 TGGAAACAGGCTGGATAAGCTATG 60.687 45.833 20.34 0.24 44.07 2.23
810 899 8.319143 AGATTCAAATCAAAGAATGCAAAAGG 57.681 30.769 5.59 0.00 37.89 3.11
811 900 8.984764 TGAGATTCAAATCAAAGAATGCAAAAG 58.015 29.630 5.59 0.00 37.89 2.27
824 913 7.094634 GGAGCTAAAGTTGTGAGATTCAAATCA 60.095 37.037 5.59 0.00 37.89 2.57
829 918 4.021456 TCGGAGCTAAAGTTGTGAGATTCA 60.021 41.667 0.00 0.00 0.00 2.57
832 921 3.511934 ACTCGGAGCTAAAGTTGTGAGAT 59.488 43.478 4.58 0.00 0.00 2.75
834 923 3.246619 GACTCGGAGCTAAAGTTGTGAG 58.753 50.000 4.58 0.00 0.00 3.51
885 974 4.105486 GCGTTTGAGAATTTATTCCTGCC 58.895 43.478 0.00 0.00 37.51 4.85
922 1011 9.757859 CATAAAAATTGCATTAAACATGACACC 57.242 29.630 0.00 0.00 0.00 4.16
961 1050 4.586421 TCCCTGCAATTTTCACACAATACA 59.414 37.500 0.00 0.00 0.00 2.29
986 1075 6.770785 TGCCCAGGTCATCTATAAAATACAAC 59.229 38.462 0.00 0.00 0.00 3.32
1113 1202 1.434555 TCACTATGCCGTTTGAACCG 58.565 50.000 0.00 0.00 0.00 4.44
1167 1256 3.008049 TCTCCTTAGCAACAACCTCCTTC 59.992 47.826 0.00 0.00 0.00 3.46
1351 1440 8.800370 TCATTAACTAAACTGATTGGCATGTA 57.200 30.769 0.00 0.00 0.00 2.29
1405 1494 6.020678 CGGTTTGAACAAGTCAATCAGAAAAC 60.021 38.462 0.00 0.00 45.71 2.43
1539 1628 8.772250 ACCATAGAAATAGACTCCTCAATTTCA 58.228 33.333 9.31 0.00 39.63 2.69
1588 1677 3.119352 GGAGCTACAAGAAAAATGCCTGG 60.119 47.826 0.00 0.00 0.00 4.45
1594 1683 7.765695 TGAAAGATGGAGCTACAAGAAAAAT 57.234 32.000 0.66 0.00 0.00 1.82
1634 1723 7.736447 ACCAGCTTTAATGATAACTAGATGC 57.264 36.000 0.00 0.00 0.00 3.91
1643 1732 9.851686 AATGAGAACATACCAGCTTTAATGATA 57.148 29.630 6.05 0.00 35.50 2.15
1812 1901 0.324943 ATGCTACAGCCGTGGAAAGT 59.675 50.000 0.00 0.00 41.18 2.66
1820 1909 5.984233 TGTAAAATCTAATGCTACAGCCG 57.016 39.130 0.00 0.00 41.18 5.52
1821 1910 7.535139 TGTTTGTAAAATCTAATGCTACAGCC 58.465 34.615 0.00 0.00 41.18 4.85
1896 1985 5.848406 AGGATTCATGATACCGAGAACTTC 58.152 41.667 0.00 0.00 0.00 3.01
1951 2040 6.364568 AGGGAGTACGTATTTAAGTTGGTT 57.635 37.500 0.00 0.00 0.00 3.67
1955 2044 4.706962 ACGGAGGGAGTACGTATTTAAGTT 59.293 41.667 0.00 0.00 39.30 2.66
1964 2053 0.540365 TTGGAACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 43.43 3.57
1966 2055 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
1967 2056 5.703730 AATATTTTGGAACGGAGGGAGTA 57.296 39.130 0.00 0.00 0.00 2.59
1968 2057 4.586306 AATATTTTGGAACGGAGGGAGT 57.414 40.909 0.00 0.00 0.00 3.85
1969 2058 4.705023 ACAAATATTTTGGAACGGAGGGAG 59.295 41.667 0.00 0.00 0.00 4.30
1970 2059 4.668636 ACAAATATTTTGGAACGGAGGGA 58.331 39.130 0.00 0.00 0.00 4.20
1971 2060 4.705023 AGACAAATATTTTGGAACGGAGGG 59.295 41.667 0.00 0.00 0.00 4.30
1972 2061 5.897377 AGACAAATATTTTGGAACGGAGG 57.103 39.130 0.00 0.00 0.00 4.30
1973 2062 7.593825 AGAAAGACAAATATTTTGGAACGGAG 58.406 34.615 0.00 0.00 0.00 4.63
1974 2063 7.519032 AGAAAGACAAATATTTTGGAACGGA 57.481 32.000 0.00 0.00 0.00 4.69
1975 2064 7.968405 CCTAGAAAGACAAATATTTTGGAACGG 59.032 37.037 0.00 0.00 0.00 4.44
1976 2065 7.484959 GCCTAGAAAGACAAATATTTTGGAACG 59.515 37.037 0.00 0.00 0.00 3.95
1977 2066 8.303876 TGCCTAGAAAGACAAATATTTTGGAAC 58.696 33.333 0.00 0.00 0.00 3.62
1978 2067 8.415950 TGCCTAGAAAGACAAATATTTTGGAA 57.584 30.769 0.00 0.00 0.00 3.53
1979 2068 8.593945 ATGCCTAGAAAGACAAATATTTTGGA 57.406 30.769 0.00 0.00 0.00 3.53
1980 2069 9.657419 AAATGCCTAGAAAGACAAATATTTTGG 57.343 29.630 0.00 0.00 0.00 3.28
1986 2075 9.859427 CATTTGAAATGCCTAGAAAGACAAATA 57.141 29.630 4.82 0.00 34.96 1.40
1987 2076 7.820872 CCATTTGAAATGCCTAGAAAGACAAAT 59.179 33.333 12.26 0.00 36.38 2.32
1988 2077 7.015098 TCCATTTGAAATGCCTAGAAAGACAAA 59.985 33.333 12.26 0.00 0.00 2.83
1989 2078 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
1990 2079 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
1991 2080 6.071952 TGTCCATTTGAAATGCCTAGAAAGAC 60.072 38.462 12.26 11.27 0.00 3.01
1992 2081 6.009589 TGTCCATTTGAAATGCCTAGAAAGA 58.990 36.000 12.26 0.00 0.00 2.52
1993 2082 6.095377 GTGTCCATTTGAAATGCCTAGAAAG 58.905 40.000 12.26 0.00 0.00 2.62
1994 2083 5.538053 TGTGTCCATTTGAAATGCCTAGAAA 59.462 36.000 12.26 0.00 0.00 2.52
1995 2084 5.076182 TGTGTCCATTTGAAATGCCTAGAA 58.924 37.500 12.26 0.00 0.00 2.10
1996 2085 4.661222 TGTGTCCATTTGAAATGCCTAGA 58.339 39.130 12.26 1.83 0.00 2.43
1997 2086 5.163513 GTTGTGTCCATTTGAAATGCCTAG 58.836 41.667 12.26 0.00 0.00 3.02
1998 2087 4.586421 TGTTGTGTCCATTTGAAATGCCTA 59.414 37.500 12.26 0.00 0.00 3.93
1999 2088 3.387374 TGTTGTGTCCATTTGAAATGCCT 59.613 39.130 12.26 0.00 0.00 4.75
2000 2089 3.726607 TGTTGTGTCCATTTGAAATGCC 58.273 40.909 12.26 5.75 0.00 4.40
2001 2090 5.060816 CGTATGTTGTGTCCATTTGAAATGC 59.939 40.000 12.26 0.87 0.00 3.56
2002 2091 5.572511 CCGTATGTTGTGTCCATTTGAAATG 59.427 40.000 10.84 10.84 0.00 2.32
2003 2092 5.475220 TCCGTATGTTGTGTCCATTTGAAAT 59.525 36.000 0.00 0.00 0.00 2.17
2004 2093 4.822350 TCCGTATGTTGTGTCCATTTGAAA 59.178 37.500 0.00 0.00 0.00 2.69
2005 2094 4.390264 TCCGTATGTTGTGTCCATTTGAA 58.610 39.130 0.00 0.00 0.00 2.69
2006 2095 4.009370 TCCGTATGTTGTGTCCATTTGA 57.991 40.909 0.00 0.00 0.00 2.69
2007 2096 4.155826 ACATCCGTATGTTGTGTCCATTTG 59.844 41.667 0.00 0.00 44.07 2.32
2008 2097 4.331968 ACATCCGTATGTTGTGTCCATTT 58.668 39.130 0.00 0.00 44.07 2.32
2009 2098 3.950397 ACATCCGTATGTTGTGTCCATT 58.050 40.909 0.00 0.00 44.07 3.16
2010 2099 3.627395 ACATCCGTATGTTGTGTCCAT 57.373 42.857 0.00 0.00 44.07 3.41
2011 2100 4.438148 CATACATCCGTATGTTGTGTCCA 58.562 43.478 0.00 0.00 46.70 4.02
2049 2138 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2050 2139 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2051 2140 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2052 2141 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2053 2142 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2054 2143 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2055 2144 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2056 2145 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2057 2146 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2058 2147 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2059 2148 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2060 2149 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2061 2150 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2062 2151 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2063 2152 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2064 2153 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2065 2154 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2066 2155 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2067 2156 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2068 2157 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2069 2158 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2070 2159 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2071 2160 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2072 2161 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2073 2162 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2075 2164 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2076 2165 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2077 2166 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2078 2167 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2079 2168 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2080 2169 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2081 2170 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2082 2171 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2083 2172 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2096 2185 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2097 2186 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2098 2187 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2099 2188 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2100 2189 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2101 2190 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2102 2191 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2103 2192 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2104 2193 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2105 2194 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2106 2195 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2107 2196 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2108 2197 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2109 2198 7.450903 CAAATACTCCCTCCGTTCCTAAATAT 58.549 38.462 0.00 0.00 0.00 1.28
2110 2199 6.687139 GCAAATACTCCCTCCGTTCCTAAATA 60.687 42.308 0.00 0.00 0.00 1.40
2111 2200 5.681639 CAAATACTCCCTCCGTTCCTAAAT 58.318 41.667 0.00 0.00 0.00 1.40
2112 2201 4.624604 GCAAATACTCCCTCCGTTCCTAAA 60.625 45.833 0.00 0.00 0.00 1.85
2113 2202 3.118519 GCAAATACTCCCTCCGTTCCTAA 60.119 47.826 0.00 0.00 0.00 2.69
2114 2203 2.433239 GCAAATACTCCCTCCGTTCCTA 59.567 50.000 0.00 0.00 0.00 2.94
2115 2204 1.209747 GCAAATACTCCCTCCGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
2116 2205 1.209747 AGCAAATACTCCCTCCGTTCC 59.790 52.381 0.00 0.00 0.00 3.62
2117 2206 2.693267 AGCAAATACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
2118 2207 3.009143 AGAAAGCAAATACTCCCTCCGTT 59.991 43.478 0.00 0.00 0.00 4.44
2119 2208 2.572104 AGAAAGCAAATACTCCCTCCGT 59.428 45.455 0.00 0.00 0.00 4.69
2120 2209 3.268023 AGAAAGCAAATACTCCCTCCG 57.732 47.619 0.00 0.00 0.00 4.63
2121 2210 5.746284 AGTAAGAAAGCAAATACTCCCTCC 58.254 41.667 0.00 0.00 0.00 4.30
2122 2211 6.094186 CCAAGTAAGAAAGCAAATACTCCCTC 59.906 42.308 0.00 0.00 0.00 4.30
2123 2212 5.946377 CCAAGTAAGAAAGCAAATACTCCCT 59.054 40.000 0.00 0.00 0.00 4.20
2124 2213 5.393135 GCCAAGTAAGAAAGCAAATACTCCC 60.393 44.000 0.00 0.00 0.00 4.30
2125 2214 5.183140 TGCCAAGTAAGAAAGCAAATACTCC 59.817 40.000 0.00 0.00 0.00 3.85
2126 2215 6.072452 ACTGCCAAGTAAGAAAGCAAATACTC 60.072 38.462 0.00 0.00 33.79 2.59
2127 2216 5.770162 ACTGCCAAGTAAGAAAGCAAATACT 59.230 36.000 0.00 0.00 33.79 2.12
2203 2293 6.360370 ACTGTCAACTAAGGCTCATTTCTA 57.640 37.500 0.00 0.00 0.00 2.10
2272 2547 2.584835 TGAGCAATAAACTGCACCCT 57.415 45.000 0.00 0.00 45.18 4.34
2310 2585 5.652518 AGAGAAGCAGGTACGAGTTATTTC 58.347 41.667 0.00 0.00 0.00 2.17
2404 2679 5.751509 TGTATATGTTTTCAATCGACCTCCG 59.248 40.000 0.00 0.00 40.25 4.63
2450 2725 8.322091 CCCTAAAACTAGGATCAATGGGTATAG 58.678 40.741 0.00 0.00 39.60 1.31
2504 2781 4.464112 GTGTGCATTCCTTTCGAACTAAC 58.536 43.478 0.00 0.00 31.79 2.34
2511 2788 3.535561 AGATAGGTGTGCATTCCTTTCG 58.464 45.455 15.87 0.00 37.06 3.46
2513 2790 7.961326 AATTTAGATAGGTGTGCATTCCTTT 57.039 32.000 15.87 9.63 35.51 3.11
2605 2882 3.488384 GGTTGCATCGACACAAACTTTCA 60.488 43.478 9.46 0.00 30.67 2.69
2665 2942 2.247358 GCCAACTTTTGAGGGGAATGA 58.753 47.619 0.00 0.00 0.00 2.57
2701 2978 9.302345 GTGAAAATCTTGAGACATATCGACTAA 57.698 33.333 0.00 0.00 0.00 2.24
2783 3060 5.215252 TCCTGCTTAAGATAATTAGCGCT 57.785 39.130 17.26 17.26 36.43 5.92
2874 3152 2.936919 AGGTGTTGAGAGCATCACAA 57.063 45.000 0.00 0.00 43.32 3.33
2879 3157 3.996150 CACAAAAGGTGTTGAGAGCAT 57.004 42.857 0.00 0.00 42.75 3.79
3152 3433 6.835819 TCACTGTATGAACTAGCTTGTAGT 57.164 37.500 0.00 0.00 33.02 2.73
3188 3469 7.039714 AGGAAGGGCAAGTAAAAGAACAATTAG 60.040 37.037 0.00 0.00 0.00 1.73
3192 3473 4.542697 AGGAAGGGCAAGTAAAAGAACAA 58.457 39.130 0.00 0.00 0.00 2.83
3246 3527 5.951747 AGGAAAATAGCTTGCCAGAATACAA 59.048 36.000 0.00 0.00 0.00 2.41
3472 3761 8.633561 GCTAACCAAGATAAATAAAGGAGCAAT 58.366 33.333 0.00 0.00 0.00 3.56
3683 3974 4.637091 GGGCAATGCAGCATTTTTATTCTT 59.363 37.500 18.48 0.00 31.05 2.52
3738 4029 8.065473 ACATATTCCAATTTGTGTATCAAGCA 57.935 30.769 0.00 0.00 37.35 3.91
3839 4130 4.588951 ACACAATCCACAGACTTCTCAGTA 59.411 41.667 0.00 0.00 31.22 2.74
3851 4142 6.462552 TTCAAAAGATTGACACAATCCACA 57.537 33.333 17.22 0.20 45.01 4.17
3896 4187 8.530269 AATAAGTACGAAAATATCTTAGGCCG 57.470 34.615 0.00 0.00 0.00 6.13
3907 4198 4.261031 GCCATGCCGAATAAGTACGAAAAT 60.261 41.667 0.00 0.00 0.00 1.82
3912 4203 1.865865 AGCCATGCCGAATAAGTACG 58.134 50.000 0.00 0.00 0.00 3.67
4033 4356 8.352201 ACCATAACAAATATGATGTATGTGTGC 58.648 33.333 0.00 0.00 43.52 4.57
4050 4373 4.080582 ACTGCTAGCCACATACCATAACAA 60.081 41.667 13.29 0.00 0.00 2.83
4125 4448 8.846943 TCTGTTATGCTCTAAACAAATTCTCA 57.153 30.769 0.00 0.00 35.32 3.27
4228 4551 2.747446 CTCCAAATCGAACACGGGAATT 59.253 45.455 0.00 0.00 0.00 2.17
4264 4587 5.183140 ACAAACTATGTGTAGCATTGAACCC 59.817 40.000 7.93 0.00 41.93 4.11
4304 4627 9.143631 CTGGACAGAAATATTTGAAAAATCCAC 57.856 33.333 5.17 0.00 0.00 4.02
4500 4843 7.766738 GGTACCAAAAGAACAAGAAAAATGGAA 59.233 33.333 7.15 0.00 0.00 3.53
4501 4844 7.125053 AGGTACCAAAAGAACAAGAAAAATGGA 59.875 33.333 15.94 0.00 0.00 3.41
4502 4845 7.272244 AGGTACCAAAAGAACAAGAAAAATGG 58.728 34.615 15.94 0.00 0.00 3.16
4639 4984 5.295540 GCACTAGGGATCTGAATTTGAGTTC 59.704 44.000 0.00 0.00 0.00 3.01
4871 5218 7.772332 AAGAATACCAAGCTTATGTTAGTCG 57.228 36.000 0.00 0.00 0.00 4.18
5009 5356 3.866883 AATTGAAACCCCTACATTGCG 57.133 42.857 0.00 0.00 0.00 4.85
5021 5368 8.755018 CACCACAAGATTTCTGTAAATTGAAAC 58.245 33.333 0.00 0.00 35.41 2.78
5031 5378 7.404671 AGTAAAAACACCACAAGATTTCTGT 57.595 32.000 0.00 0.00 0.00 3.41
5062 5410 5.897250 TCATGCCAGTACAGACTCCTTATTA 59.103 40.000 0.00 0.00 31.73 0.98
5078 5426 1.068895 TGCCAAACTTTGTCATGCCAG 59.931 47.619 0.88 0.00 0.00 4.85
5128 5476 1.806542 GTGGGACGACGACAAGTACTA 59.193 52.381 0.00 0.00 0.00 1.82
5144 5492 0.034477 AAATAAGAGCACCGGGTGGG 60.034 55.000 27.41 4.64 40.75 4.61
5180 5528 1.021202 TTGAAATAAGCGGCCCATCG 58.979 50.000 0.00 0.00 0.00 3.84
5181 5529 3.733443 AATTGAAATAAGCGGCCCATC 57.267 42.857 0.00 0.00 0.00 3.51
5183 5531 2.167487 GGAAATTGAAATAAGCGGCCCA 59.833 45.455 0.00 0.00 0.00 5.36
5184 5532 2.167487 TGGAAATTGAAATAAGCGGCCC 59.833 45.455 0.00 0.00 0.00 5.80
5185 5533 3.186909 GTGGAAATTGAAATAAGCGGCC 58.813 45.455 0.00 0.00 0.00 6.13
5189 5537 5.105063 GCTCTGGTGGAAATTGAAATAAGC 58.895 41.667 0.00 0.00 0.00 3.09
5190 5538 5.123820 TCGCTCTGGTGGAAATTGAAATAAG 59.876 40.000 0.00 0.00 0.00 1.73
5192 5540 4.584874 TCGCTCTGGTGGAAATTGAAATA 58.415 39.130 0.00 0.00 0.00 1.40
5193 5541 3.420893 TCGCTCTGGTGGAAATTGAAAT 58.579 40.909 0.00 0.00 0.00 2.17
5194 5542 2.857483 TCGCTCTGGTGGAAATTGAAA 58.143 42.857 0.00 0.00 0.00 2.69
5195 5543 2.559698 TCGCTCTGGTGGAAATTGAA 57.440 45.000 0.00 0.00 0.00 2.69
5196 5544 2.559698 TTCGCTCTGGTGGAAATTGA 57.440 45.000 0.00 0.00 0.00 2.57
5197 5545 2.669391 GCTTTCGCTCTGGTGGAAATTG 60.669 50.000 0.00 0.00 0.00 2.32
5198 5546 1.541588 GCTTTCGCTCTGGTGGAAATT 59.458 47.619 0.00 0.00 0.00 1.82
5199 5547 1.168714 GCTTTCGCTCTGGTGGAAAT 58.831 50.000 0.00 0.00 0.00 2.17
5200 5548 0.108585 AGCTTTCGCTCTGGTGGAAA 59.891 50.000 0.00 0.00 45.15 3.13
5201 5549 0.603707 CAGCTTTCGCTCTGGTGGAA 60.604 55.000 0.00 0.00 45.15 3.53
5202 5550 1.004560 CAGCTTTCGCTCTGGTGGA 60.005 57.895 0.00 0.00 45.15 4.02
5203 5551 2.684843 GCAGCTTTCGCTCTGGTGG 61.685 63.158 0.00 0.00 45.15 4.61
5204 5552 2.866028 GCAGCTTTCGCTCTGGTG 59.134 61.111 0.00 0.00 45.15 4.17
5205 5553 2.740055 CGCAGCTTTCGCTCTGGT 60.740 61.111 0.00 0.00 45.15 4.00
5218 5566 1.129251 CAGAAACTACACCATGCGCAG 59.871 52.381 18.32 5.51 0.00 5.18
5219 5567 1.155889 CAGAAACTACACCATGCGCA 58.844 50.000 14.96 14.96 0.00 6.09
5220 5568 0.179189 GCAGAAACTACACCATGCGC 60.179 55.000 0.00 0.00 0.00 6.09
5221 5569 3.975992 GCAGAAACTACACCATGCG 57.024 52.632 0.00 0.00 0.00 4.73
5222 5570 1.394917 CTCGCAGAAACTACACCATGC 59.605 52.381 0.00 0.00 34.09 4.06
5223 5571 1.394917 GCTCGCAGAAACTACACCATG 59.605 52.381 0.00 0.00 34.09 3.66
5224 5572 1.001974 TGCTCGCAGAAACTACACCAT 59.998 47.619 0.00 0.00 34.09 3.55
5225 5573 0.391228 TGCTCGCAGAAACTACACCA 59.609 50.000 0.00 0.00 34.09 4.17
5226 5574 1.661112 GATGCTCGCAGAAACTACACC 59.339 52.381 0.00 0.00 34.09 4.16
5227 5575 1.321743 CGATGCTCGCAGAAACTACAC 59.678 52.381 0.00 0.00 34.09 2.90
5228 5576 1.067846 ACGATGCTCGCAGAAACTACA 60.068 47.619 5.63 0.00 45.12 2.74
5229 5577 1.630148 ACGATGCTCGCAGAAACTAC 58.370 50.000 5.63 0.00 45.12 2.73
5230 5578 1.992667 CAACGATGCTCGCAGAAACTA 59.007 47.619 5.63 0.00 45.12 2.24
5231 5579 0.792640 CAACGATGCTCGCAGAAACT 59.207 50.000 5.63 0.00 45.12 2.66
5232 5580 0.179215 CCAACGATGCTCGCAGAAAC 60.179 55.000 5.63 0.00 45.12 2.78
5233 5581 0.320334 TCCAACGATGCTCGCAGAAA 60.320 50.000 5.63 0.00 45.12 2.52
5234 5582 0.108186 ATCCAACGATGCTCGCAGAA 60.108 50.000 5.63 0.00 45.12 3.02
5235 5583 0.807275 CATCCAACGATGCTCGCAGA 60.807 55.000 5.63 1.79 45.12 4.26
5236 5584 1.640069 CATCCAACGATGCTCGCAG 59.360 57.895 5.63 0.00 45.12 5.18
5237 5585 3.798380 CATCCAACGATGCTCGCA 58.202 55.556 5.63 0.00 45.12 5.10
5244 5592 0.177836 TCCATCACGCATCCAACGAT 59.822 50.000 0.00 0.00 0.00 3.73
5245 5593 0.739462 GTCCATCACGCATCCAACGA 60.739 55.000 0.00 0.00 0.00 3.85
5246 5594 1.715585 GTCCATCACGCATCCAACG 59.284 57.895 0.00 0.00 0.00 4.10
5247 5595 1.715585 CGTCCATCACGCATCCAAC 59.284 57.895 0.00 0.00 42.87 3.77
5248 5596 4.200287 CGTCCATCACGCATCCAA 57.800 55.556 0.00 0.00 42.87 3.53
5256 5604 3.490759 CGCTGCACCGTCCATCAC 61.491 66.667 0.00 0.00 0.00 3.06
5257 5605 4.758251 CCGCTGCACCGTCCATCA 62.758 66.667 0.00 0.00 0.00 3.07
5274 5622 4.790861 GCCGAGGGACGTCGTTCC 62.791 72.222 15.44 15.44 38.32 3.62
5275 5623 3.966026 CTGCCGAGGGACGTCGTTC 62.966 68.421 9.92 8.57 38.32 3.95
5276 5624 4.052229 CTGCCGAGGGACGTCGTT 62.052 66.667 9.92 0.00 38.32 3.85
5277 5625 3.907260 TACTGCCGAGGGACGTCGT 62.907 63.158 9.92 0.00 38.32 4.34
5278 5626 3.109612 CTACTGCCGAGGGACGTCG 62.110 68.421 9.92 7.38 40.78 5.12
5279 5627 1.310933 TTCTACTGCCGAGGGACGTC 61.311 60.000 7.13 7.13 40.78 4.34
5280 5628 1.303888 TTCTACTGCCGAGGGACGT 60.304 57.895 0.00 0.00 40.78 4.34
5281 5629 1.139095 GTTCTACTGCCGAGGGACG 59.861 63.158 0.00 0.00 42.18 4.79
5282 5630 1.139095 CGTTCTACTGCCGAGGGAC 59.861 63.158 0.00 0.00 0.00 4.46
5283 5631 0.035152 TACGTTCTACTGCCGAGGGA 60.035 55.000 0.00 0.00 0.00 4.20
5284 5632 0.100146 GTACGTTCTACTGCCGAGGG 59.900 60.000 0.00 0.00 0.00 4.30
5285 5633 0.100146 GGTACGTTCTACTGCCGAGG 59.900 60.000 0.00 0.00 0.00 4.63
5286 5634 0.806868 TGGTACGTTCTACTGCCGAG 59.193 55.000 0.00 0.00 0.00 4.63
5287 5635 1.200716 CTTGGTACGTTCTACTGCCGA 59.799 52.381 0.00 0.00 0.00 5.54
5288 5636 1.068055 ACTTGGTACGTTCTACTGCCG 60.068 52.381 0.00 0.00 0.00 5.69
5289 5637 2.029649 TGACTTGGTACGTTCTACTGCC 60.030 50.000 0.00 0.00 0.00 4.85
5290 5638 3.057736 TCTGACTTGGTACGTTCTACTGC 60.058 47.826 0.00 0.00 0.00 4.40
5291 5639 4.379603 CCTCTGACTTGGTACGTTCTACTG 60.380 50.000 0.00 0.00 0.00 2.74
5292 5640 3.757493 CCTCTGACTTGGTACGTTCTACT 59.243 47.826 0.00 0.00 0.00 2.57
5293 5641 3.755378 TCCTCTGACTTGGTACGTTCTAC 59.245 47.826 0.00 0.00 0.00 2.59
5294 5642 4.025040 TCCTCTGACTTGGTACGTTCTA 57.975 45.455 0.00 0.00 0.00 2.10
5295 5643 2.872732 TCCTCTGACTTGGTACGTTCT 58.127 47.619 0.00 0.00 0.00 3.01
5296 5644 3.444388 AGATCCTCTGACTTGGTACGTTC 59.556 47.826 0.00 0.00 0.00 3.95
5297 5645 3.432378 AGATCCTCTGACTTGGTACGTT 58.568 45.455 0.00 0.00 0.00 3.99
5298 5646 3.018149 GAGATCCTCTGACTTGGTACGT 58.982 50.000 0.00 0.00 0.00 3.57
5299 5647 2.032302 CGAGATCCTCTGACTTGGTACG 59.968 54.545 0.00 0.00 0.00 3.67
5300 5648 3.018149 ACGAGATCCTCTGACTTGGTAC 58.982 50.000 0.00 0.00 0.00 3.34
5301 5649 3.367646 ACGAGATCCTCTGACTTGGTA 57.632 47.619 0.00 0.00 0.00 3.25
5302 5650 2.223803 ACGAGATCCTCTGACTTGGT 57.776 50.000 0.00 0.00 0.00 3.67
5303 5651 2.159170 GGAACGAGATCCTCTGACTTGG 60.159 54.545 0.00 0.00 36.50 3.61
5304 5652 2.493675 TGGAACGAGATCCTCTGACTTG 59.506 50.000 0.00 0.00 40.35 3.16
5305 5653 2.808919 TGGAACGAGATCCTCTGACTT 58.191 47.619 0.00 0.00 40.35 3.01
5306 5654 2.516227 TGGAACGAGATCCTCTGACT 57.484 50.000 0.00 0.00 40.35 3.41
5307 5655 4.764823 AGATATGGAACGAGATCCTCTGAC 59.235 45.833 0.00 0.00 40.35 3.51
5308 5656 4.991776 AGATATGGAACGAGATCCTCTGA 58.008 43.478 0.00 0.00 40.35 3.27
5309 5657 5.242615 TCAAGATATGGAACGAGATCCTCTG 59.757 44.000 0.00 0.00 40.35 3.35
5310 5658 5.389520 TCAAGATATGGAACGAGATCCTCT 58.610 41.667 0.00 0.00 40.35 3.69
5311 5659 5.713792 TCAAGATATGGAACGAGATCCTC 57.286 43.478 0.00 0.00 40.35 3.71
5312 5660 5.600484 AGTTCAAGATATGGAACGAGATCCT 59.400 40.000 1.97 0.00 46.09 3.24
5313 5661 5.848406 AGTTCAAGATATGGAACGAGATCC 58.152 41.667 1.97 0.00 46.09 3.36
5314 5662 8.920665 CAATAGTTCAAGATATGGAACGAGATC 58.079 37.037 1.97 0.00 46.09 2.75
5315 5663 8.424918 ACAATAGTTCAAGATATGGAACGAGAT 58.575 33.333 1.97 0.00 46.09 2.75
5316 5664 7.782049 ACAATAGTTCAAGATATGGAACGAGA 58.218 34.615 1.97 0.00 46.09 4.04
5317 5665 8.425577 AACAATAGTTCAAGATATGGAACGAG 57.574 34.615 1.97 0.00 46.09 4.18
5318 5666 8.786826 AAACAATAGTTCAAGATATGGAACGA 57.213 30.769 1.97 0.00 46.09 3.85
5319 5667 8.883731 AGAAACAATAGTTCAAGATATGGAACG 58.116 33.333 1.97 0.00 46.09 3.95
5320 5668 9.994432 CAGAAACAATAGTTCAAGATATGGAAC 57.006 33.333 0.00 0.00 42.82 3.62
5321 5669 9.958180 TCAGAAACAATAGTTCAAGATATGGAA 57.042 29.630 0.00 0.00 36.84 3.53
5322 5670 9.958180 TTCAGAAACAATAGTTCAAGATATGGA 57.042 29.630 0.00 0.00 36.84 3.41
5346 5697 2.485814 GACACAGAGCATTGGGAACTTC 59.514 50.000 0.00 0.00 0.00 3.01
5364 5715 2.358582 CACAACAACCTGCAATGAGACA 59.641 45.455 1.23 0.00 0.00 3.41
5469 5820 6.547510 AGAATTCTTTGGCAACTACTGTCTTT 59.452 34.615 0.88 0.00 37.61 2.52
5478 5829 6.248433 TGAGGAATAGAATTCTTTGGCAACT 58.752 36.000 14.36 3.60 37.61 3.16
5481 5832 5.528690 CGATGAGGAATAGAATTCTTTGGCA 59.471 40.000 14.36 5.69 0.00 4.92
5524 5875 5.495926 AAGAGAGAGAAGATGCCTTTGAA 57.504 39.130 0.00 0.00 31.62 2.69
5525 5876 5.495926 AAAGAGAGAGAAGATGCCTTTGA 57.504 39.130 0.00 0.00 31.62 2.69
5527 5878 6.125589 AGAAAAGAGAGAGAAGATGCCTTT 57.874 37.500 0.00 0.00 31.62 3.11
5528 5879 5.760484 AGAAAAGAGAGAGAAGATGCCTT 57.240 39.130 0.00 0.00 34.81 4.35
5530 5881 6.654582 AGAAAAGAAAAGAGAGAGAAGATGCC 59.345 38.462 0.00 0.00 0.00 4.40
5543 5894 6.439058 TCCCCACAAGAAAAGAAAAGAAAAGA 59.561 34.615 0.00 0.00 0.00 2.52
5546 5897 5.482175 TGTCCCCACAAGAAAAGAAAAGAAA 59.518 36.000 0.00 0.00 0.00 2.52
5603 5983 8.437360 TTCGATTAATGAGCATTGTAATCTGT 57.563 30.769 5.99 0.00 29.77 3.41
5604 5984 7.533222 GCTTCGATTAATGAGCATTGTAATCTG 59.467 37.037 5.99 5.56 29.77 2.90
5605 5985 7.227314 TGCTTCGATTAATGAGCATTGTAATCT 59.773 33.333 11.63 0.00 29.77 2.40
5606 5986 7.355017 TGCTTCGATTAATGAGCATTGTAATC 58.645 34.615 11.63 7.15 32.50 1.75
5607 5987 7.263100 TGCTTCGATTAATGAGCATTGTAAT 57.737 32.000 11.63 0.00 32.50 1.89
5608 5988 6.676237 TGCTTCGATTAATGAGCATTGTAA 57.324 33.333 11.63 0.00 32.50 2.41
5610 5990 4.497006 GCTGCTTCGATTAATGAGCATTGT 60.497 41.667 14.57 0.00 32.50 2.71
5611 5991 3.973135 GCTGCTTCGATTAATGAGCATTG 59.027 43.478 14.57 8.22 32.50 2.82
5612 5992 3.881688 AGCTGCTTCGATTAATGAGCATT 59.118 39.130 14.57 0.97 34.93 3.56
5613 5993 3.250280 CAGCTGCTTCGATTAATGAGCAT 59.750 43.478 14.57 3.20 0.00 3.79
5614 5994 2.610833 CAGCTGCTTCGATTAATGAGCA 59.389 45.455 0.00 13.86 0.00 4.26
5615 5995 2.611292 ACAGCTGCTTCGATTAATGAGC 59.389 45.455 15.27 0.43 0.00 4.26
5616 5996 4.093998 ACAACAGCTGCTTCGATTAATGAG 59.906 41.667 15.27 0.00 0.00 2.90
5617 5997 4.002982 ACAACAGCTGCTTCGATTAATGA 58.997 39.130 15.27 0.00 0.00 2.57
5618 5998 4.093514 CACAACAGCTGCTTCGATTAATG 58.906 43.478 15.27 0.00 0.00 1.90
5619 5999 4.002982 TCACAACAGCTGCTTCGATTAAT 58.997 39.130 15.27 0.00 0.00 1.40
5620 6000 3.398406 TCACAACAGCTGCTTCGATTAA 58.602 40.909 15.27 0.00 0.00 1.40
5621 6001 3.038788 TCACAACAGCTGCTTCGATTA 57.961 42.857 15.27 0.00 0.00 1.75
5622 6002 1.882912 TCACAACAGCTGCTTCGATT 58.117 45.000 15.27 0.00 0.00 3.34
5626 6006 9.226345 GTAAAATAATATCACAACAGCTGCTTC 57.774 33.333 15.27 0.00 0.00 3.86
5672 6052 7.791590 ACGTTATTGCAAATTTCATTGAAAACG 59.208 29.630 15.34 17.14 37.75 3.60
5705 6094 7.011109 CGCCAATAGCAACTACTAGTAACAAAT 59.989 37.037 3.76 0.00 44.04 2.32
5706 6095 6.311935 CGCCAATAGCAACTACTAGTAACAAA 59.688 38.462 3.76 0.00 44.04 2.83
5709 6098 5.346522 ACGCCAATAGCAACTACTAGTAAC 58.653 41.667 3.76 0.00 44.04 2.50
5710 6099 5.587388 ACGCCAATAGCAACTACTAGTAA 57.413 39.130 3.76 0.00 44.04 2.24
5711 6100 6.095300 TGTTACGCCAATAGCAACTACTAGTA 59.905 38.462 1.89 1.89 44.04 1.82
5713 6102 5.345702 TGTTACGCCAATAGCAACTACTAG 58.654 41.667 0.00 0.00 44.04 2.57
5716 6105 3.930848 ACTGTTACGCCAATAGCAACTAC 59.069 43.478 0.00 0.00 44.04 2.73
5723 6178 3.797256 GCAGACTACTGTTACGCCAATAG 59.203 47.826 0.00 0.00 45.04 1.73
5755 6210 9.710900 CCACATAGCTGATACATAACAGAAATA 57.289 33.333 0.00 0.00 36.38 1.40
5760 6215 6.283694 ACACCACATAGCTGATACATAACAG 58.716 40.000 0.00 0.00 37.22 3.16
5765 6220 4.099419 TCGAACACCACATAGCTGATACAT 59.901 41.667 0.00 0.00 0.00 2.29
5815 6270 3.690280 CGGGGCCGCCAAAACATT 61.690 61.111 15.16 0.00 0.00 2.71
5943 6398 2.484770 GCGGTGGATATGCACTTCCTAA 60.485 50.000 24.30 0.00 32.95 2.69
5964 6419 2.549754 GGAAATCATGCCACGTCATAGG 59.450 50.000 0.00 0.00 0.00 2.57
5968 6423 0.327924 AGGGAAATCATGCCACGTCA 59.672 50.000 0.00 0.00 43.29 4.35
5984 6450 3.803368 GCAAAACAAACCATGGAGAAGGG 60.803 47.826 21.47 3.95 0.00 3.95
6026 6492 2.286523 CCAGGGAGTCTTGTCGCCT 61.287 63.158 0.00 0.00 0.00 5.52
6123 6599 8.766000 ATACACTAAAATGTACAACATCACGA 57.234 30.769 0.00 0.00 37.97 4.35
6319 6796 7.235606 TGGGAGTATCAGAAAGAAGAGAGAAAA 59.764 37.037 0.00 0.00 36.25 2.29
6420 6897 8.292448 CACAAGTACTGTCAAAAGAATTAGCAT 58.708 33.333 0.00 0.00 35.47 3.79
6589 7077 3.282021 CTGCACCAACTAATACATGCCT 58.718 45.455 0.00 0.00 32.02 4.75
6611 7099 8.767478 TTTGTTAGTATTAGTAGGTGACTTGC 57.233 34.615 0.00 0.00 43.67 4.01
6699 7193 8.692110 TCAAAGATTTCATTCACATGTTATGC 57.308 30.769 11.26 0.97 0.00 3.14
6813 7312 5.812127 AGAACGCAGCATTCTTTTTCTTTTT 59.188 32.000 0.00 0.00 32.32 1.94
6814 7313 5.351458 AGAACGCAGCATTCTTTTTCTTTT 58.649 33.333 0.00 0.00 32.32 2.27
6815 7314 4.936891 AGAACGCAGCATTCTTTTTCTTT 58.063 34.783 0.00 0.00 32.32 2.52
6816 7315 4.036734 TGAGAACGCAGCATTCTTTTTCTT 59.963 37.500 4.97 0.00 36.53 2.52
6817 7316 3.565482 TGAGAACGCAGCATTCTTTTTCT 59.435 39.130 4.97 0.00 36.53 2.52
6818 7317 3.888934 TGAGAACGCAGCATTCTTTTTC 58.111 40.909 4.97 0.00 36.53 2.29
6819 7318 3.988379 TGAGAACGCAGCATTCTTTTT 57.012 38.095 4.97 0.00 36.53 1.94
6820 7319 3.988379 TTGAGAACGCAGCATTCTTTT 57.012 38.095 4.97 0.00 36.53 2.27
6821 7320 3.316308 AGTTTGAGAACGCAGCATTCTTT 59.684 39.130 4.97 0.00 40.75 2.52
6822 7321 2.880890 AGTTTGAGAACGCAGCATTCTT 59.119 40.909 4.97 0.00 40.75 2.52
6823 7322 2.225019 CAGTTTGAGAACGCAGCATTCT 59.775 45.455 2.66 2.66 40.75 2.40
6824 7323 2.224079 TCAGTTTGAGAACGCAGCATTC 59.776 45.455 0.00 0.00 40.75 2.67
6825 7324 2.221169 TCAGTTTGAGAACGCAGCATT 58.779 42.857 0.00 0.00 40.75 3.56
6826 7325 1.882912 TCAGTTTGAGAACGCAGCAT 58.117 45.000 0.00 0.00 40.75 3.79
6827 7326 1.662517 TTCAGTTTGAGAACGCAGCA 58.337 45.000 0.00 0.00 40.75 4.41
6828 7327 2.578495 CATTCAGTTTGAGAACGCAGC 58.422 47.619 0.00 0.00 40.75 5.25
6829 7328 2.807967 TCCATTCAGTTTGAGAACGCAG 59.192 45.455 0.00 0.00 40.75 5.18
6830 7329 2.844946 TCCATTCAGTTTGAGAACGCA 58.155 42.857 0.00 0.00 40.75 5.24
6831 7330 3.436704 TCATCCATTCAGTTTGAGAACGC 59.563 43.478 0.00 0.00 40.75 4.84
6832 7331 5.180117 ACTTCATCCATTCAGTTTGAGAACG 59.820 40.000 0.00 0.00 40.75 3.95
6833 7332 6.566197 ACTTCATCCATTCAGTTTGAGAAC 57.434 37.500 0.00 0.00 35.97 3.01
6834 7333 7.453393 AGTACTTCATCCATTCAGTTTGAGAA 58.547 34.615 0.00 0.00 0.00 2.87
6835 7334 7.009179 AGTACTTCATCCATTCAGTTTGAGA 57.991 36.000 0.00 0.00 0.00 3.27
6938 7566 6.609616 TGGTTCTCCAATTAAAGGTTTCTTGT 59.390 34.615 0.00 0.00 41.25 3.16
7021 7649 0.548510 GACCTCAAGGAAGGGATGGG 59.451 60.000 2.30 0.00 41.04 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.