Multiple sequence alignment - TraesCS5A01G048200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G048200 chr5A 100.000 3398 0 0 1 3398 44280018 44276621 0.000000e+00 6276
1 TraesCS5A01G048200 chr7A 99.326 2820 18 1 579 3398 13133456 13130638 0.000000e+00 5101
2 TraesCS5A01G048200 chr7A 99.078 2821 26 0 578 3398 707670449 707673269 0.000000e+00 5066
3 TraesCS5A01G048200 chrUn 99.220 2821 21 1 579 3398 8808795 8805975 0.000000e+00 5086
4 TraesCS5A01G048200 chr7B 99.114 2821 22 3 578 3398 714452957 714450140 0.000000e+00 5068
5 TraesCS5A01G048200 chr3B 99.043 2820 21 1 579 3398 60270841 60273654 0.000000e+00 5053
6 TraesCS5A01G048200 chr2A 98.617 2820 33 2 579 3398 734935070 734932257 0.000000e+00 4987
7 TraesCS5A01G048200 chr2A 97.734 2824 51 6 579 3398 2768049 2765235 0.000000e+00 4848
8 TraesCS5A01G048200 chr2A 89.915 1656 110 26 1781 3398 38527716 38526080 0.000000e+00 2080
9 TraesCS5A01G048200 chr6B 98.087 2823 42 5 579 3398 704743237 704746050 0.000000e+00 4903
10 TraesCS5A01G048200 chr4B 97.589 2820 35 3 579 3398 621762622 621759836 0.000000e+00 4800
11 TraesCS5A01G048200 chr5D 94.692 584 23 3 1 576 55532908 55532325 0.000000e+00 900
12 TraesCS5A01G048200 chr6D 89.965 578 56 2 1 578 37600162 37599587 0.000000e+00 745
13 TraesCS5A01G048200 chr5B 97.802 182 4 0 203 384 57972476 57972295 7.080000e-82 315


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G048200 chr5A 44276621 44280018 3397 True 6276 6276 100.000 1 3398 1 chr5A.!!$R1 3397
1 TraesCS5A01G048200 chr7A 13130638 13133456 2818 True 5101 5101 99.326 579 3398 1 chr7A.!!$R1 2819
2 TraesCS5A01G048200 chr7A 707670449 707673269 2820 False 5066 5066 99.078 578 3398 1 chr7A.!!$F1 2820
3 TraesCS5A01G048200 chrUn 8805975 8808795 2820 True 5086 5086 99.220 579 3398 1 chrUn.!!$R1 2819
4 TraesCS5A01G048200 chr7B 714450140 714452957 2817 True 5068 5068 99.114 578 3398 1 chr7B.!!$R1 2820
5 TraesCS5A01G048200 chr3B 60270841 60273654 2813 False 5053 5053 99.043 579 3398 1 chr3B.!!$F1 2819
6 TraesCS5A01G048200 chr2A 734932257 734935070 2813 True 4987 4987 98.617 579 3398 1 chr2A.!!$R3 2819
7 TraesCS5A01G048200 chr2A 2765235 2768049 2814 True 4848 4848 97.734 579 3398 1 chr2A.!!$R1 2819
8 TraesCS5A01G048200 chr2A 38526080 38527716 1636 True 2080 2080 89.915 1781 3398 1 chr2A.!!$R2 1617
9 TraesCS5A01G048200 chr6B 704743237 704746050 2813 False 4903 4903 98.087 579 3398 1 chr6B.!!$F1 2819
10 TraesCS5A01G048200 chr4B 621759836 621762622 2786 True 4800 4800 97.589 579 3398 1 chr4B.!!$R1 2819
11 TraesCS5A01G048200 chr5D 55532325 55532908 583 True 900 900 94.692 1 576 1 chr5D.!!$R1 575
12 TraesCS5A01G048200 chr6D 37599587 37600162 575 True 745 745 89.965 1 578 1 chr6D.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 531 0.035317 AATGTGACTGGAGCGCTTCA 59.965 50.0 19.46 19.46 0.0 3.02 F
531 532 0.251354 ATGTGACTGGAGCGCTTCAT 59.749 50.0 21.07 9.69 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 2475 0.995024 CCCTCCACTTCCTTCATGGT 59.005 55.000 0.0 0.0 37.07 3.55 R
2857 3114 2.959516 TCAGTTTCGTCAGGCACTATG 58.040 47.619 0.0 0.0 36.02 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.500645 AAACCGAGAAGAAACAAAGGAAG 57.499 39.130 0.00 0.00 0.00 3.46
72 73 5.521906 AGAAGAAACAAAGGAAGAAAGCC 57.478 39.130 0.00 0.00 0.00 4.35
74 75 3.288092 AGAAACAAAGGAAGAAAGCCGT 58.712 40.909 0.00 0.00 0.00 5.68
75 76 3.066760 AGAAACAAAGGAAGAAAGCCGTG 59.933 43.478 0.00 0.00 0.00 4.94
79 80 0.602905 AAGGAAGAAAGCCGTGGACG 60.603 55.000 0.00 0.00 39.44 4.79
87 88 0.872388 AAGCCGTGGACGATGAAAAC 59.128 50.000 0.00 0.00 43.02 2.43
108 109 2.205074 CCTGAGGATTTCGTTGATCCG 58.795 52.381 0.00 0.00 46.19 4.18
119 120 1.129058 GTTGATCCGGACACCCCTAT 58.871 55.000 6.12 0.00 0.00 2.57
141 142 2.591571 GGCAGAAGAAATCAATGGCC 57.408 50.000 0.00 0.00 0.00 5.36
146 147 4.015084 CAGAAGAAATCAATGGCCACTCT 58.985 43.478 8.16 0.01 0.00 3.24
169 170 1.153046 GCCAAGCCGTATAGCCCAA 60.153 57.895 0.00 0.00 0.00 4.12
170 171 1.166531 GCCAAGCCGTATAGCCCAAG 61.167 60.000 0.00 0.00 0.00 3.61
171 172 1.166531 CCAAGCCGTATAGCCCAAGC 61.167 60.000 0.00 0.00 40.32 4.01
172 173 1.227556 AAGCCGTATAGCCCAAGCG 60.228 57.895 0.00 0.00 46.67 4.68
173 174 1.968050 AAGCCGTATAGCCCAAGCGT 61.968 55.000 0.00 0.00 46.67 5.07
174 175 1.111116 AGCCGTATAGCCCAAGCGTA 61.111 55.000 0.00 0.00 46.67 4.42
175 176 0.666577 GCCGTATAGCCCAAGCGTAG 60.667 60.000 0.00 0.00 46.67 3.51
176 177 0.672342 CCGTATAGCCCAAGCGTAGT 59.328 55.000 0.00 0.00 46.67 2.73
177 178 1.068127 CCGTATAGCCCAAGCGTAGTT 59.932 52.381 0.00 0.00 46.67 2.24
178 179 2.124903 CGTATAGCCCAAGCGTAGTTG 58.875 52.381 0.00 0.00 46.67 3.16
179 180 2.223641 CGTATAGCCCAAGCGTAGTTGA 60.224 50.000 0.00 0.00 46.67 3.18
180 181 2.604046 ATAGCCCAAGCGTAGTTGAG 57.396 50.000 0.00 0.00 46.67 3.02
181 182 1.552578 TAGCCCAAGCGTAGTTGAGA 58.447 50.000 0.00 0.00 46.67 3.27
182 183 0.685097 AGCCCAAGCGTAGTTGAGAA 59.315 50.000 0.00 0.00 46.67 2.87
183 184 1.071699 AGCCCAAGCGTAGTTGAGAAA 59.928 47.619 0.00 0.00 46.67 2.52
184 185 2.084546 GCCCAAGCGTAGTTGAGAAAT 58.915 47.619 0.00 0.00 0.00 2.17
185 186 2.159517 GCCCAAGCGTAGTTGAGAAATG 60.160 50.000 0.00 0.00 0.00 2.32
186 187 2.420022 CCCAAGCGTAGTTGAGAAATGG 59.580 50.000 0.00 0.00 0.00 3.16
187 188 3.074412 CCAAGCGTAGTTGAGAAATGGT 58.926 45.455 0.00 0.00 0.00 3.55
188 189 4.250464 CCAAGCGTAGTTGAGAAATGGTA 58.750 43.478 0.00 0.00 0.00 3.25
189 190 4.693566 CCAAGCGTAGTTGAGAAATGGTAA 59.306 41.667 0.00 0.00 0.00 2.85
190 191 5.163854 CCAAGCGTAGTTGAGAAATGGTAAG 60.164 44.000 0.00 0.00 0.00 2.34
191 192 5.401531 AGCGTAGTTGAGAAATGGTAAGA 57.598 39.130 0.00 0.00 0.00 2.10
192 193 5.978814 AGCGTAGTTGAGAAATGGTAAGAT 58.021 37.500 0.00 0.00 0.00 2.40
193 194 5.812642 AGCGTAGTTGAGAAATGGTAAGATG 59.187 40.000 0.00 0.00 0.00 2.90
194 195 5.502544 GCGTAGTTGAGAAATGGTAAGATGC 60.503 44.000 0.00 0.00 0.00 3.91
195 196 5.812642 CGTAGTTGAGAAATGGTAAGATGCT 59.187 40.000 0.00 0.00 0.00 3.79
196 197 6.978659 CGTAGTTGAGAAATGGTAAGATGCTA 59.021 38.462 0.00 0.00 0.00 3.49
197 198 7.043325 CGTAGTTGAGAAATGGTAAGATGCTAC 60.043 40.741 0.00 0.00 0.00 3.58
198 199 6.951971 AGTTGAGAAATGGTAAGATGCTACT 58.048 36.000 0.00 0.00 0.00 2.57
199 200 7.398024 AGTTGAGAAATGGTAAGATGCTACTT 58.602 34.615 0.00 0.00 0.00 2.24
200 201 7.885399 AGTTGAGAAATGGTAAGATGCTACTTT 59.115 33.333 1.86 0.00 0.00 2.66
201 202 7.849804 TGAGAAATGGTAAGATGCTACTTTC 57.150 36.000 1.86 0.00 0.00 2.62
202 203 6.823689 TGAGAAATGGTAAGATGCTACTTTCC 59.176 38.462 10.37 10.37 37.67 3.13
203 204 6.721318 AGAAATGGTAAGATGCTACTTTCCA 58.279 36.000 17.88 17.88 45.92 3.53
207 208 6.313519 TGGTAAGATGCTACTTTCCATTCT 57.686 37.500 14.00 0.00 40.53 2.40
208 209 6.349300 TGGTAAGATGCTACTTTCCATTCTC 58.651 40.000 14.00 0.00 40.53 2.87
209 210 6.070251 TGGTAAGATGCTACTTTCCATTCTCA 60.070 38.462 14.00 0.00 40.53 3.27
210 211 6.823689 GGTAAGATGCTACTTTCCATTCTCAA 59.176 38.462 11.69 0.00 37.31 3.02
211 212 7.336931 GGTAAGATGCTACTTTCCATTCTCAAA 59.663 37.037 11.69 0.00 37.31 2.69
212 213 6.749923 AGATGCTACTTTCCATTCTCAAAC 57.250 37.500 0.00 0.00 0.00 2.93
213 214 6.479884 AGATGCTACTTTCCATTCTCAAACT 58.520 36.000 0.00 0.00 0.00 2.66
214 215 6.944862 AGATGCTACTTTCCATTCTCAAACTT 59.055 34.615 0.00 0.00 0.00 2.66
215 216 8.103305 AGATGCTACTTTCCATTCTCAAACTTA 58.897 33.333 0.00 0.00 0.00 2.24
216 217 7.672983 TGCTACTTTCCATTCTCAAACTTAG 57.327 36.000 0.00 0.00 0.00 2.18
217 218 7.450074 TGCTACTTTCCATTCTCAAACTTAGA 58.550 34.615 0.00 0.00 0.00 2.10
218 219 7.936847 TGCTACTTTCCATTCTCAAACTTAGAA 59.063 33.333 0.00 0.00 37.38 2.10
219 220 8.951243 GCTACTTTCCATTCTCAAACTTAGAAT 58.049 33.333 0.00 0.00 42.95 2.40
222 223 8.507249 ACTTTCCATTCTCAAACTTAGAATTCG 58.493 33.333 0.00 0.00 40.81 3.34
223 224 7.979444 TTCCATTCTCAAACTTAGAATTCGT 57.021 32.000 0.00 0.00 40.81 3.85
224 225 7.979444 TCCATTCTCAAACTTAGAATTCGTT 57.021 32.000 0.00 0.00 40.81 3.85
225 226 8.029642 TCCATTCTCAAACTTAGAATTCGTTC 57.970 34.615 0.00 0.00 40.81 3.95
226 227 7.119262 TCCATTCTCAAACTTAGAATTCGTTCC 59.881 37.037 0.00 0.00 40.81 3.62
227 228 7.094805 CCATTCTCAAACTTAGAATTCGTTCCA 60.095 37.037 0.00 0.00 40.81 3.53
228 229 7.979444 TTCTCAAACTTAGAATTCGTTCCAT 57.021 32.000 0.00 0.00 0.00 3.41
229 230 7.596749 TCTCAAACTTAGAATTCGTTCCATC 57.403 36.000 0.00 0.00 0.00 3.51
230 231 7.158697 TCTCAAACTTAGAATTCGTTCCATCA 58.841 34.615 0.00 0.00 0.00 3.07
231 232 7.331934 TCTCAAACTTAGAATTCGTTCCATCAG 59.668 37.037 0.00 0.00 0.00 2.90
232 233 6.934645 TCAAACTTAGAATTCGTTCCATCAGT 59.065 34.615 0.00 0.00 0.00 3.41
233 234 7.444183 TCAAACTTAGAATTCGTTCCATCAGTT 59.556 33.333 0.00 0.00 0.00 3.16
234 235 8.717821 CAAACTTAGAATTCGTTCCATCAGTTA 58.282 33.333 0.00 0.00 0.00 2.24
235 236 7.829378 ACTTAGAATTCGTTCCATCAGTTAC 57.171 36.000 0.00 0.00 0.00 2.50
236 237 6.530534 ACTTAGAATTCGTTCCATCAGTTACG 59.469 38.462 0.00 0.00 35.46 3.18
237 238 3.617263 AGAATTCGTTCCATCAGTTACGC 59.383 43.478 0.00 0.00 34.24 4.42
238 239 1.717194 TTCGTTCCATCAGTTACGCC 58.283 50.000 0.00 0.00 34.24 5.68
239 240 0.892755 TCGTTCCATCAGTTACGCCT 59.107 50.000 0.00 0.00 34.24 5.52
240 241 1.274167 TCGTTCCATCAGTTACGCCTT 59.726 47.619 0.00 0.00 34.24 4.35
241 242 1.393539 CGTTCCATCAGTTACGCCTTG 59.606 52.381 0.00 0.00 0.00 3.61
242 243 1.130561 GTTCCATCAGTTACGCCTTGC 59.869 52.381 0.00 0.00 0.00 4.01
243 244 0.613260 TCCATCAGTTACGCCTTGCT 59.387 50.000 0.00 0.00 0.00 3.91
244 245 0.729116 CCATCAGTTACGCCTTGCTG 59.271 55.000 0.00 0.00 0.00 4.41
245 246 1.675714 CCATCAGTTACGCCTTGCTGA 60.676 52.381 0.00 0.00 41.43 4.26
246 247 2.076100 CATCAGTTACGCCTTGCTGAA 58.924 47.619 0.00 0.00 40.71 3.02
247 248 2.472695 TCAGTTACGCCTTGCTGAAT 57.527 45.000 0.00 0.00 35.36 2.57
248 249 2.778299 TCAGTTACGCCTTGCTGAATT 58.222 42.857 0.00 0.00 35.36 2.17
249 250 2.483877 TCAGTTACGCCTTGCTGAATTG 59.516 45.455 0.00 0.00 35.36 2.32
250 251 1.200020 AGTTACGCCTTGCTGAATTGC 59.800 47.619 0.00 0.00 0.00 3.56
251 252 1.068610 GTTACGCCTTGCTGAATTGCA 60.069 47.619 0.00 0.00 41.65 4.08
252 253 1.462616 TACGCCTTGCTGAATTGCAT 58.537 45.000 0.00 0.00 42.96 3.96
253 254 0.108992 ACGCCTTGCTGAATTGCATG 60.109 50.000 0.00 0.00 42.96 4.06
254 255 1.418342 CGCCTTGCTGAATTGCATGC 61.418 55.000 11.82 11.82 42.96 4.06
255 256 1.087771 GCCTTGCTGAATTGCATGCC 61.088 55.000 16.68 0.00 42.96 4.40
256 257 0.535335 CCTTGCTGAATTGCATGCCT 59.465 50.000 16.68 0.00 42.96 4.75
257 258 1.066430 CCTTGCTGAATTGCATGCCTT 60.066 47.619 16.68 8.88 42.96 4.35
258 259 1.999735 CTTGCTGAATTGCATGCCTTG 59.000 47.619 16.68 0.62 42.96 3.61
259 260 1.258676 TGCTGAATTGCATGCCTTGA 58.741 45.000 16.68 2.03 38.12 3.02
260 261 1.828595 TGCTGAATTGCATGCCTTGAT 59.171 42.857 16.68 1.03 38.12 2.57
261 262 2.235155 TGCTGAATTGCATGCCTTGATT 59.765 40.909 16.68 10.06 38.12 2.57
262 263 3.267483 GCTGAATTGCATGCCTTGATTT 58.733 40.909 16.68 0.00 0.00 2.17
263 264 3.687698 GCTGAATTGCATGCCTTGATTTT 59.312 39.130 16.68 0.00 0.00 1.82
264 265 4.155280 GCTGAATTGCATGCCTTGATTTTT 59.845 37.500 16.68 0.00 0.00 1.94
283 284 4.448537 TTTTGCAATGTAGGTGGTATGC 57.551 40.909 0.00 0.00 0.00 3.14
284 285 2.051334 TGCAATGTAGGTGGTATGCC 57.949 50.000 0.00 0.00 33.01 4.40
285 286 1.563879 TGCAATGTAGGTGGTATGCCT 59.436 47.619 0.16 0.00 40.00 4.75
286 287 1.949525 GCAATGTAGGTGGTATGCCTG 59.050 52.381 0.16 0.00 37.54 4.85
287 288 2.575532 CAATGTAGGTGGTATGCCTGG 58.424 52.381 0.16 0.00 37.54 4.45
288 289 1.893315 ATGTAGGTGGTATGCCTGGT 58.107 50.000 0.16 0.00 37.54 4.00
289 290 0.908910 TGTAGGTGGTATGCCTGGTG 59.091 55.000 0.16 0.00 37.54 4.17
290 291 0.180406 GTAGGTGGTATGCCTGGTGG 59.820 60.000 0.16 0.00 37.54 4.61
291 292 0.986019 TAGGTGGTATGCCTGGTGGG 60.986 60.000 0.16 0.00 37.54 4.61
292 293 2.305607 GGTGGTATGCCTGGTGGGA 61.306 63.158 0.16 0.00 38.31 4.37
293 294 1.224592 GTGGTATGCCTGGTGGGAG 59.775 63.158 0.16 0.00 37.02 4.30
294 295 1.229820 TGGTATGCCTGGTGGGAGT 60.230 57.895 0.16 0.00 37.02 3.85
295 296 1.271840 TGGTATGCCTGGTGGGAGTC 61.272 60.000 0.16 0.00 37.02 3.36
296 297 0.983378 GGTATGCCTGGTGGGAGTCT 60.983 60.000 0.00 0.00 37.02 3.24
297 298 0.912486 GTATGCCTGGTGGGAGTCTT 59.088 55.000 0.00 0.00 37.02 3.01
298 299 1.134371 GTATGCCTGGTGGGAGTCTTC 60.134 57.143 0.00 0.00 37.02 2.87
299 300 1.903877 ATGCCTGGTGGGAGTCTTCG 61.904 60.000 0.00 0.00 37.02 3.79
300 301 2.982130 CCTGGTGGGAGTCTTCGG 59.018 66.667 0.00 0.00 37.23 4.30
301 302 2.660064 CCTGGTGGGAGTCTTCGGG 61.660 68.421 0.00 0.00 37.23 5.14
302 303 1.609501 CTGGTGGGAGTCTTCGGGA 60.610 63.158 0.00 0.00 0.00 5.14
303 304 0.978146 CTGGTGGGAGTCTTCGGGAT 60.978 60.000 0.00 0.00 0.00 3.85
304 305 0.337082 TGGTGGGAGTCTTCGGGATA 59.663 55.000 0.00 0.00 0.00 2.59
305 306 1.062428 TGGTGGGAGTCTTCGGGATAT 60.062 52.381 0.00 0.00 0.00 1.63
306 307 2.047830 GGTGGGAGTCTTCGGGATATT 58.952 52.381 0.00 0.00 0.00 1.28
307 308 2.438392 GGTGGGAGTCTTCGGGATATTT 59.562 50.000 0.00 0.00 0.00 1.40
308 309 3.118000 GGTGGGAGTCTTCGGGATATTTT 60.118 47.826 0.00 0.00 0.00 1.82
309 310 3.877508 GTGGGAGTCTTCGGGATATTTTG 59.122 47.826 0.00 0.00 0.00 2.44
310 311 3.118038 TGGGAGTCTTCGGGATATTTTGG 60.118 47.826 0.00 0.00 0.00 3.28
311 312 3.477530 GGAGTCTTCGGGATATTTTGGG 58.522 50.000 0.00 0.00 0.00 4.12
312 313 3.477530 GAGTCTTCGGGATATTTTGGGG 58.522 50.000 0.00 0.00 0.00 4.96
313 314 1.954382 GTCTTCGGGATATTTTGGGGC 59.046 52.381 0.00 0.00 0.00 5.80
314 315 1.566703 TCTTCGGGATATTTTGGGGCA 59.433 47.619 0.00 0.00 0.00 5.36
315 316 1.956477 CTTCGGGATATTTTGGGGCAG 59.044 52.381 0.00 0.00 0.00 4.85
316 317 1.217916 TCGGGATATTTTGGGGCAGA 58.782 50.000 0.00 0.00 0.00 4.26
317 318 1.780309 TCGGGATATTTTGGGGCAGAT 59.220 47.619 0.00 0.00 0.00 2.90
318 319 2.162681 CGGGATATTTTGGGGCAGATC 58.837 52.381 0.00 0.00 0.00 2.75
319 320 2.529632 GGGATATTTTGGGGCAGATCC 58.470 52.381 0.00 0.00 33.49 3.36
320 321 2.110721 GGGATATTTTGGGGCAGATCCT 59.889 50.000 0.00 0.00 34.49 3.24
321 322 3.160269 GGATATTTTGGGGCAGATCCTG 58.840 50.000 0.00 0.00 31.88 3.86
333 334 3.754188 CAGATCCTGCTAGCACAAAAC 57.246 47.619 14.93 4.78 0.00 2.43
334 335 2.421424 CAGATCCTGCTAGCACAAAACC 59.579 50.000 14.93 1.23 0.00 3.27
335 336 2.040278 AGATCCTGCTAGCACAAAACCA 59.960 45.455 14.93 0.00 0.00 3.67
336 337 1.604604 TCCTGCTAGCACAAAACCAC 58.395 50.000 14.93 0.00 0.00 4.16
337 338 0.598065 CCTGCTAGCACAAAACCACC 59.402 55.000 14.93 0.00 0.00 4.61
338 339 0.598065 CTGCTAGCACAAAACCACCC 59.402 55.000 14.93 0.00 0.00 4.61
339 340 0.184933 TGCTAGCACAAAACCACCCT 59.815 50.000 14.93 0.00 0.00 4.34
340 341 1.328279 GCTAGCACAAAACCACCCTT 58.672 50.000 10.63 0.00 0.00 3.95
341 342 1.686587 GCTAGCACAAAACCACCCTTT 59.313 47.619 10.63 0.00 0.00 3.11
342 343 2.545742 GCTAGCACAAAACCACCCTTTG 60.546 50.000 10.63 0.00 39.26 2.77
343 344 1.567357 AGCACAAAACCACCCTTTGT 58.433 45.000 0.00 0.00 45.56 2.83
344 345 1.480545 AGCACAAAACCACCCTTTGTC 59.519 47.619 0.00 0.00 43.42 3.18
345 346 1.205893 GCACAAAACCACCCTTTGTCA 59.794 47.619 0.00 0.00 43.42 3.58
346 347 2.158971 GCACAAAACCACCCTTTGTCAT 60.159 45.455 0.00 0.00 43.42 3.06
347 348 3.068873 GCACAAAACCACCCTTTGTCATA 59.931 43.478 0.00 0.00 43.42 2.15
348 349 4.795962 GCACAAAACCACCCTTTGTCATAG 60.796 45.833 0.00 0.00 43.42 2.23
349 350 4.340950 CACAAAACCACCCTTTGTCATAGT 59.659 41.667 0.00 0.00 43.42 2.12
350 351 5.533154 CACAAAACCACCCTTTGTCATAGTA 59.467 40.000 0.00 0.00 43.42 1.82
351 352 6.039941 CACAAAACCACCCTTTGTCATAGTAA 59.960 38.462 0.00 0.00 43.42 2.24
352 353 6.264518 ACAAAACCACCCTTTGTCATAGTAAG 59.735 38.462 0.00 0.00 41.97 2.34
353 354 5.578157 AACCACCCTTTGTCATAGTAAGT 57.422 39.130 0.00 0.00 0.00 2.24
354 355 4.906618 ACCACCCTTTGTCATAGTAAGTG 58.093 43.478 0.00 0.00 0.00 3.16
355 356 4.595781 ACCACCCTTTGTCATAGTAAGTGA 59.404 41.667 0.00 0.00 0.00 3.41
356 357 4.935808 CCACCCTTTGTCATAGTAAGTGAC 59.064 45.833 0.00 0.00 44.77 3.67
357 358 5.280011 CCACCCTTTGTCATAGTAAGTGACT 60.280 44.000 7.65 0.00 44.80 3.41
358 359 5.869888 CACCCTTTGTCATAGTAAGTGACTC 59.130 44.000 7.65 0.00 44.80 3.36
359 360 5.542635 ACCCTTTGTCATAGTAAGTGACTCA 59.457 40.000 7.65 0.00 44.80 3.41
360 361 5.869888 CCCTTTGTCATAGTAAGTGACTCAC 59.130 44.000 0.38 0.38 44.80 3.51
361 362 6.455647 CCTTTGTCATAGTAAGTGACTCACA 58.544 40.000 11.80 0.00 44.80 3.58
362 363 7.099764 CCTTTGTCATAGTAAGTGACTCACAT 58.900 38.462 11.80 1.98 44.80 3.21
363 364 7.604164 CCTTTGTCATAGTAAGTGACTCACATT 59.396 37.037 11.80 5.72 44.80 2.71
364 365 8.534333 TTTGTCATAGTAAGTGACTCACATTC 57.466 34.615 11.80 0.00 44.80 2.67
365 366 6.322491 TGTCATAGTAAGTGACTCACATTCG 58.678 40.000 11.80 0.00 44.80 3.34
366 367 6.072119 TGTCATAGTAAGTGACTCACATTCGT 60.072 38.462 11.80 0.00 44.80 3.85
367 368 6.251589 GTCATAGTAAGTGACTCACATTCGTG 59.748 42.308 11.80 3.70 42.04 4.35
377 378 0.734889 CACATTCGTGAGGATTGGGC 59.265 55.000 2.71 0.00 46.80 5.36
378 379 0.744414 ACATTCGTGAGGATTGGGCG 60.744 55.000 2.71 0.00 31.74 6.13
379 380 0.461870 CATTCGTGAGGATTGGGCGA 60.462 55.000 0.00 0.00 0.00 5.54
380 381 0.469917 ATTCGTGAGGATTGGGCGAT 59.530 50.000 0.00 0.00 0.00 4.58
381 382 0.461870 TTCGTGAGGATTGGGCGATG 60.462 55.000 0.00 0.00 0.00 3.84
382 383 1.153369 CGTGAGGATTGGGCGATGT 60.153 57.895 0.00 0.00 0.00 3.06
383 384 1.431488 CGTGAGGATTGGGCGATGTG 61.431 60.000 0.00 0.00 0.00 3.21
384 385 0.392998 GTGAGGATTGGGCGATGTGT 60.393 55.000 0.00 0.00 0.00 3.72
385 386 0.392863 TGAGGATTGGGCGATGTGTG 60.393 55.000 0.00 0.00 0.00 3.82
386 387 1.077501 AGGATTGGGCGATGTGTGG 60.078 57.895 0.00 0.00 0.00 4.17
387 388 1.378514 GGATTGGGCGATGTGTGGT 60.379 57.895 0.00 0.00 0.00 4.16
388 389 1.656818 GGATTGGGCGATGTGTGGTG 61.657 60.000 0.00 0.00 0.00 4.17
389 390 0.960364 GATTGGGCGATGTGTGGTGT 60.960 55.000 0.00 0.00 0.00 4.16
390 391 1.243342 ATTGGGCGATGTGTGGTGTG 61.243 55.000 0.00 0.00 0.00 3.82
391 392 2.031919 GGGCGATGTGTGGTGTGA 59.968 61.111 0.00 0.00 0.00 3.58
392 393 2.034879 GGGCGATGTGTGGTGTGAG 61.035 63.158 0.00 0.00 0.00 3.51
393 394 2.680913 GGCGATGTGTGGTGTGAGC 61.681 63.158 0.00 0.00 0.00 4.26
394 395 1.669115 GCGATGTGTGGTGTGAGCT 60.669 57.895 0.00 0.00 0.00 4.09
395 396 1.904852 GCGATGTGTGGTGTGAGCTG 61.905 60.000 0.00 0.00 0.00 4.24
396 397 0.319813 CGATGTGTGGTGTGAGCTGA 60.320 55.000 0.00 0.00 0.00 4.26
397 398 1.673923 CGATGTGTGGTGTGAGCTGAT 60.674 52.381 0.00 0.00 0.00 2.90
398 399 2.430465 GATGTGTGGTGTGAGCTGATT 58.570 47.619 0.00 0.00 0.00 2.57
399 400 2.346766 TGTGTGGTGTGAGCTGATTT 57.653 45.000 0.00 0.00 0.00 2.17
400 401 3.483808 TGTGTGGTGTGAGCTGATTTA 57.516 42.857 0.00 0.00 0.00 1.40
401 402 3.814625 TGTGTGGTGTGAGCTGATTTAA 58.185 40.909 0.00 0.00 0.00 1.52
402 403 3.814842 TGTGTGGTGTGAGCTGATTTAAG 59.185 43.478 0.00 0.00 0.00 1.85
403 404 4.065088 GTGTGGTGTGAGCTGATTTAAGA 58.935 43.478 0.00 0.00 0.00 2.10
404 405 4.515191 GTGTGGTGTGAGCTGATTTAAGAA 59.485 41.667 0.00 0.00 0.00 2.52
405 406 5.008613 GTGTGGTGTGAGCTGATTTAAGAAA 59.991 40.000 0.00 0.00 0.00 2.52
406 407 5.008613 TGTGGTGTGAGCTGATTTAAGAAAC 59.991 40.000 0.00 0.00 0.00 2.78
407 408 5.239525 GTGGTGTGAGCTGATTTAAGAAACT 59.760 40.000 0.00 0.00 0.00 2.66
408 409 5.239306 TGGTGTGAGCTGATTTAAGAAACTG 59.761 40.000 0.00 0.00 0.00 3.16
409 410 5.149977 GTGTGAGCTGATTTAAGAAACTGC 58.850 41.667 0.00 0.00 0.00 4.40
410 411 4.821260 TGTGAGCTGATTTAAGAAACTGCA 59.179 37.500 0.00 0.00 0.00 4.41
411 412 5.474532 TGTGAGCTGATTTAAGAAACTGCAT 59.525 36.000 0.00 0.00 0.00 3.96
412 413 6.026513 GTGAGCTGATTTAAGAAACTGCATC 58.973 40.000 0.00 0.00 0.00 3.91
413 414 5.942236 TGAGCTGATTTAAGAAACTGCATCT 59.058 36.000 0.00 0.00 0.00 2.90
414 415 6.432162 TGAGCTGATTTAAGAAACTGCATCTT 59.568 34.615 6.32 6.32 40.18 2.40
415 416 6.618811 AGCTGATTTAAGAAACTGCATCTTG 58.381 36.000 10.63 0.00 37.67 3.02
416 417 6.208204 AGCTGATTTAAGAAACTGCATCTTGT 59.792 34.615 10.63 0.00 37.67 3.16
417 418 6.307318 GCTGATTTAAGAAACTGCATCTTGTG 59.693 38.462 10.63 0.00 37.67 3.33
418 419 7.509141 TGATTTAAGAAACTGCATCTTGTGA 57.491 32.000 10.63 0.00 37.67 3.58
419 420 8.114331 TGATTTAAGAAACTGCATCTTGTGAT 57.886 30.769 10.63 3.14 37.67 3.06
420 421 9.230122 TGATTTAAGAAACTGCATCTTGTGATA 57.770 29.630 10.63 0.00 37.67 2.15
421 422 9.713740 GATTTAAGAAACTGCATCTTGTGATAG 57.286 33.333 10.63 0.00 37.67 2.08
422 423 8.621532 TTTAAGAAACTGCATCTTGTGATAGT 57.378 30.769 10.63 0.00 37.67 2.12
423 424 9.719355 TTTAAGAAACTGCATCTTGTGATAGTA 57.281 29.630 10.63 0.00 37.67 1.82
424 425 9.890629 TTAAGAAACTGCATCTTGTGATAGTAT 57.109 29.630 10.63 0.00 37.67 2.12
425 426 8.798859 AAGAAACTGCATCTTGTGATAGTATT 57.201 30.769 0.24 0.00 35.85 1.89
426 427 8.798859 AGAAACTGCATCTTGTGATAGTATTT 57.201 30.769 0.00 0.00 0.00 1.40
427 428 9.236006 AGAAACTGCATCTTGTGATAGTATTTT 57.764 29.630 0.00 0.00 0.00 1.82
428 429 9.846248 GAAACTGCATCTTGTGATAGTATTTTT 57.154 29.630 0.00 0.00 0.00 1.94
429 430 9.846248 AAACTGCATCTTGTGATAGTATTTTTC 57.154 29.630 0.00 0.00 0.00 2.29
430 431 8.798859 ACTGCATCTTGTGATAGTATTTTTCT 57.201 30.769 0.00 0.00 0.00 2.52
431 432 9.890629 ACTGCATCTTGTGATAGTATTTTTCTA 57.109 29.630 0.00 0.00 0.00 2.10
455 456 7.869016 ATAGATAACGGATCACATACAAACG 57.131 36.000 0.00 0.00 36.98 3.60
456 457 5.047847 AGATAACGGATCACATACAAACGG 58.952 41.667 0.00 0.00 36.98 4.44
457 458 3.322211 AACGGATCACATACAAACGGA 57.678 42.857 0.00 0.00 0.00 4.69
458 459 3.536956 ACGGATCACATACAAACGGAT 57.463 42.857 0.00 0.00 0.00 4.18
459 460 3.869065 ACGGATCACATACAAACGGATT 58.131 40.909 0.00 0.00 0.00 3.01
460 461 4.258543 ACGGATCACATACAAACGGATTT 58.741 39.130 0.00 0.00 0.00 2.17
461 462 4.331717 ACGGATCACATACAAACGGATTTC 59.668 41.667 0.00 0.00 0.00 2.17
462 463 4.260620 CGGATCACATACAAACGGATTTCC 60.261 45.833 0.00 0.00 0.00 3.13
463 464 4.881850 GGATCACATACAAACGGATTTCCT 59.118 41.667 0.00 0.00 0.00 3.36
464 465 5.357032 GGATCACATACAAACGGATTTCCTT 59.643 40.000 0.00 0.00 0.00 3.36
465 466 5.873179 TCACATACAAACGGATTTCCTTC 57.127 39.130 0.00 0.00 0.00 3.46
466 467 5.309638 TCACATACAAACGGATTTCCTTCA 58.690 37.500 0.00 0.00 0.00 3.02
467 468 5.411361 TCACATACAAACGGATTTCCTTCAG 59.589 40.000 0.00 0.00 0.00 3.02
468 469 4.156008 ACATACAAACGGATTTCCTTCAGC 59.844 41.667 0.00 0.00 0.00 4.26
469 470 1.535462 ACAAACGGATTTCCTTCAGCG 59.465 47.619 0.00 0.00 0.00 5.18
470 471 1.804151 CAAACGGATTTCCTTCAGCGA 59.196 47.619 0.00 0.00 0.00 4.93
471 472 2.403252 AACGGATTTCCTTCAGCGAT 57.597 45.000 0.00 0.00 0.00 4.58
472 473 3.536956 AACGGATTTCCTTCAGCGATA 57.463 42.857 0.00 0.00 0.00 2.92
473 474 3.099267 ACGGATTTCCTTCAGCGATAG 57.901 47.619 0.00 0.00 0.00 2.08
493 494 7.445836 CGATAGCGCTAAGTTGTATAATTTCC 58.554 38.462 22.98 0.00 0.00 3.13
494 495 7.115805 CGATAGCGCTAAGTTGTATAATTTCCA 59.884 37.037 22.98 0.00 0.00 3.53
495 496 6.604735 AGCGCTAAGTTGTATAATTTCCAG 57.395 37.500 8.99 0.00 0.00 3.86
496 497 5.527582 AGCGCTAAGTTGTATAATTTCCAGG 59.472 40.000 8.99 0.00 0.00 4.45
497 498 5.296035 GCGCTAAGTTGTATAATTTCCAGGT 59.704 40.000 0.00 0.00 0.00 4.00
498 499 6.183360 GCGCTAAGTTGTATAATTTCCAGGTT 60.183 38.462 0.00 0.00 0.00 3.50
499 500 7.407337 CGCTAAGTTGTATAATTTCCAGGTTC 58.593 38.462 0.00 0.00 0.00 3.62
500 501 7.280205 CGCTAAGTTGTATAATTTCCAGGTTCT 59.720 37.037 0.00 0.00 0.00 3.01
501 502 8.398665 GCTAAGTTGTATAATTTCCAGGTTCTG 58.601 37.037 0.00 0.00 0.00 3.02
502 503 6.759497 AGTTGTATAATTTCCAGGTTCTGC 57.241 37.500 0.00 0.00 0.00 4.26
503 504 5.652452 AGTTGTATAATTTCCAGGTTCTGCC 59.348 40.000 0.00 0.00 37.58 4.85
504 505 5.186256 TGTATAATTTCCAGGTTCTGCCA 57.814 39.130 0.00 0.00 40.61 4.92
505 506 4.947388 TGTATAATTTCCAGGTTCTGCCAC 59.053 41.667 0.00 0.00 40.61 5.01
506 507 1.632589 AATTTCCAGGTTCTGCCACC 58.367 50.000 0.00 0.00 40.61 4.61
508 509 0.555769 TTTCCAGGTTCTGCCACCTT 59.444 50.000 0.00 0.00 45.76 3.50
509 510 0.110486 TTCCAGGTTCTGCCACCTTC 59.890 55.000 0.00 0.00 45.76 3.46
510 511 1.672356 CCAGGTTCTGCCACCTTCG 60.672 63.158 0.00 0.00 45.76 3.79
511 512 1.371183 CAGGTTCTGCCACCTTCGA 59.629 57.895 0.00 0.00 45.76 3.71
512 513 0.250295 CAGGTTCTGCCACCTTCGAA 60.250 55.000 0.00 0.00 45.76 3.71
513 514 0.693049 AGGTTCTGCCACCTTCGAAT 59.307 50.000 0.00 0.00 45.76 3.34
514 515 0.804989 GGTTCTGCCACCTTCGAATG 59.195 55.000 0.00 0.00 37.17 2.67
515 516 1.523758 GTTCTGCCACCTTCGAATGT 58.476 50.000 0.00 0.00 0.00 2.71
516 517 1.197721 GTTCTGCCACCTTCGAATGTG 59.802 52.381 22.23 22.23 0.00 3.21
517 518 0.684535 TCTGCCACCTTCGAATGTGA 59.315 50.000 28.35 13.13 34.37 3.58
518 519 0.798776 CTGCCACCTTCGAATGTGAC 59.201 55.000 28.35 20.44 34.37 3.67
519 520 0.396435 TGCCACCTTCGAATGTGACT 59.604 50.000 28.35 0.00 34.37 3.41
520 521 0.798776 GCCACCTTCGAATGTGACTG 59.201 55.000 28.35 16.21 34.37 3.51
521 522 1.442769 CCACCTTCGAATGTGACTGG 58.557 55.000 28.35 14.11 34.37 4.00
522 523 1.001974 CCACCTTCGAATGTGACTGGA 59.998 52.381 28.35 0.00 34.37 3.86
523 524 2.341257 CACCTTCGAATGTGACTGGAG 58.659 52.381 24.13 4.33 34.37 3.86
524 525 1.338200 ACCTTCGAATGTGACTGGAGC 60.338 52.381 5.21 0.00 0.00 4.70
525 526 0.994995 CTTCGAATGTGACTGGAGCG 59.005 55.000 0.00 0.00 0.00 5.03
526 527 1.014044 TTCGAATGTGACTGGAGCGC 61.014 55.000 0.00 0.00 0.00 5.92
527 528 1.446792 CGAATGTGACTGGAGCGCT 60.447 57.895 11.27 11.27 0.00 5.92
528 529 1.016130 CGAATGTGACTGGAGCGCTT 61.016 55.000 13.26 0.00 0.00 4.68
529 530 0.723981 GAATGTGACTGGAGCGCTTC 59.276 55.000 13.26 11.25 0.00 3.86
530 531 0.035317 AATGTGACTGGAGCGCTTCA 59.965 50.000 19.46 19.46 0.00 3.02
531 532 0.251354 ATGTGACTGGAGCGCTTCAT 59.749 50.000 21.07 9.69 0.00 2.57
532 533 0.894835 TGTGACTGGAGCGCTTCATA 59.105 50.000 21.07 10.63 0.00 2.15
533 534 1.482182 TGTGACTGGAGCGCTTCATAT 59.518 47.619 21.07 10.93 0.00 1.78
534 535 2.693074 TGTGACTGGAGCGCTTCATATA 59.307 45.455 21.07 5.27 0.00 0.86
535 536 3.243535 TGTGACTGGAGCGCTTCATATAG 60.244 47.826 21.07 10.21 0.00 1.31
536 537 2.297315 TGACTGGAGCGCTTCATATAGG 59.703 50.000 21.07 9.79 0.00 2.57
537 538 1.001406 ACTGGAGCGCTTCATATAGGC 59.999 52.381 21.07 0.00 0.00 3.93
538 539 0.321671 TGGAGCGCTTCATATAGGCC 59.678 55.000 16.30 6.68 0.00 5.19
539 540 0.321671 GGAGCGCTTCATATAGGCCA 59.678 55.000 13.26 0.00 0.00 5.36
540 541 1.065854 GGAGCGCTTCATATAGGCCAT 60.066 52.381 13.26 0.00 0.00 4.40
541 542 2.005451 GAGCGCTTCATATAGGCCATG 58.995 52.381 13.26 0.00 0.00 3.66
542 543 0.449388 GCGCTTCATATAGGCCATGC 59.551 55.000 5.01 0.00 0.00 4.06
543 544 1.812235 CGCTTCATATAGGCCATGCA 58.188 50.000 5.01 0.00 0.00 3.96
544 545 1.466167 CGCTTCATATAGGCCATGCAC 59.534 52.381 5.01 0.00 0.00 4.57
545 546 2.787994 GCTTCATATAGGCCATGCACT 58.212 47.619 5.01 0.00 0.00 4.40
546 547 3.152341 GCTTCATATAGGCCATGCACTT 58.848 45.455 5.01 0.00 0.00 3.16
547 548 4.326826 GCTTCATATAGGCCATGCACTTA 58.673 43.478 5.01 0.00 0.00 2.24
548 549 4.154918 GCTTCATATAGGCCATGCACTTAC 59.845 45.833 5.01 0.00 0.00 2.34
549 550 3.925379 TCATATAGGCCATGCACTTACG 58.075 45.455 5.01 0.00 0.00 3.18
550 551 2.831685 TATAGGCCATGCACTTACGG 57.168 50.000 5.01 0.00 0.00 4.02
551 552 0.535102 ATAGGCCATGCACTTACGGC 60.535 55.000 5.01 0.00 44.10 5.68
552 553 1.622607 TAGGCCATGCACTTACGGCT 61.623 55.000 5.01 7.10 44.27 5.52
553 554 2.764314 GGCCATGCACTTACGGCTG 61.764 63.158 0.00 0.00 44.27 4.85
554 555 2.793946 CCATGCACTTACGGCTGC 59.206 61.111 0.00 0.00 0.00 5.25
555 556 1.746615 CCATGCACTTACGGCTGCT 60.747 57.895 0.00 0.00 34.29 4.24
556 557 0.461870 CCATGCACTTACGGCTGCTA 60.462 55.000 0.00 0.00 34.29 3.49
557 558 1.586422 CATGCACTTACGGCTGCTAT 58.414 50.000 0.00 0.00 34.29 2.97
558 559 2.547855 CCATGCACTTACGGCTGCTATA 60.548 50.000 0.00 0.00 34.29 1.31
559 560 2.509052 TGCACTTACGGCTGCTATAG 57.491 50.000 0.00 0.00 34.29 1.31
560 561 2.028876 TGCACTTACGGCTGCTATAGA 58.971 47.619 3.21 0.00 34.29 1.98
561 562 2.034685 TGCACTTACGGCTGCTATAGAG 59.965 50.000 3.21 0.00 34.29 2.43
562 563 2.608261 GCACTTACGGCTGCTATAGAGG 60.608 54.545 3.21 0.00 0.00 3.69
563 564 2.623889 CACTTACGGCTGCTATAGAGGT 59.376 50.000 3.21 0.00 0.00 3.85
564 565 3.819337 CACTTACGGCTGCTATAGAGGTA 59.181 47.826 3.21 0.00 0.00 3.08
565 566 4.459685 CACTTACGGCTGCTATAGAGGTAT 59.540 45.833 3.21 0.00 0.00 2.73
566 567 5.047943 CACTTACGGCTGCTATAGAGGTATT 60.048 44.000 3.21 0.00 0.00 1.89
567 568 5.183522 ACTTACGGCTGCTATAGAGGTATTC 59.816 44.000 3.21 0.00 0.00 1.75
568 569 3.497332 ACGGCTGCTATAGAGGTATTCA 58.503 45.455 3.21 0.00 0.00 2.57
569 570 4.090090 ACGGCTGCTATAGAGGTATTCAT 58.910 43.478 3.21 0.00 0.00 2.57
570 571 4.158764 ACGGCTGCTATAGAGGTATTCATC 59.841 45.833 3.21 0.00 0.00 2.92
571 572 4.158579 CGGCTGCTATAGAGGTATTCATCA 59.841 45.833 3.21 0.00 0.00 3.07
572 573 5.163468 CGGCTGCTATAGAGGTATTCATCAT 60.163 44.000 3.21 0.00 0.00 2.45
573 574 6.279882 GGCTGCTATAGAGGTATTCATCATC 58.720 44.000 3.21 0.00 0.00 2.92
574 575 6.127225 GGCTGCTATAGAGGTATTCATCATCA 60.127 42.308 3.21 0.00 0.00 3.07
575 576 7.326454 GCTGCTATAGAGGTATTCATCATCAA 58.674 38.462 3.21 0.00 0.00 2.57
576 577 7.986320 GCTGCTATAGAGGTATTCATCATCAAT 59.014 37.037 3.21 0.00 0.00 2.57
1577 1795 9.661563 TTGTTAACTGAAAAAGAACAGAGTAGA 57.338 29.630 7.22 0.00 37.54 2.59
1875 2093 0.626382 TGAACTGTGGGGTTGTGGAA 59.374 50.000 0.00 0.00 0.00 3.53
2257 2475 6.383436 AGAGATCATTCAGAACATGAGGAAGA 59.617 38.462 0.00 0.00 39.68 2.87
2857 3114 9.953697 CCTGACATAAAGATGAACTACTAGTAC 57.046 37.037 0.00 0.00 36.48 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 5.751243 TTTCTTCCTTTGTTTCTTCTCGG 57.249 39.130 0.00 0.00 0.00 4.63
66 67 1.153353 TTTCATCGTCCACGGCTTTC 58.847 50.000 0.00 0.00 40.29 2.62
72 73 0.796312 CAGGGTTTTCATCGTCCACG 59.204 55.000 0.00 0.00 41.45 4.94
74 75 1.003118 CCTCAGGGTTTTCATCGTCCA 59.997 52.381 0.00 0.00 0.00 4.02
75 76 1.278127 TCCTCAGGGTTTTCATCGTCC 59.722 52.381 0.00 0.00 0.00 4.79
79 80 4.010349 ACGAAATCCTCAGGGTTTTCATC 58.990 43.478 2.59 0.00 44.98 2.92
87 88 2.565841 GGATCAACGAAATCCTCAGGG 58.434 52.381 0.00 0.00 39.73 4.45
100 101 1.129058 ATAGGGGTGTCCGGATCAAC 58.871 55.000 7.81 10.60 41.52 3.18
101 102 1.488812 CAATAGGGGTGTCCGGATCAA 59.511 52.381 7.81 0.00 41.52 2.57
102 103 1.128200 CAATAGGGGTGTCCGGATCA 58.872 55.000 7.81 4.85 41.52 2.92
119 120 2.234414 GCCATTGATTTCTTCTGCCCAA 59.766 45.455 0.00 0.00 0.00 4.12
158 159 2.124903 CAACTACGCTTGGGCTATACG 58.875 52.381 0.00 0.00 36.09 3.06
169 170 5.401531 TCTTACCATTTCTCAACTACGCT 57.598 39.130 0.00 0.00 0.00 5.07
170 171 5.502544 GCATCTTACCATTTCTCAACTACGC 60.503 44.000 0.00 0.00 0.00 4.42
171 172 5.812642 AGCATCTTACCATTTCTCAACTACG 59.187 40.000 0.00 0.00 0.00 3.51
172 173 7.982354 AGTAGCATCTTACCATTTCTCAACTAC 59.018 37.037 0.00 0.00 0.00 2.73
173 174 8.079211 AGTAGCATCTTACCATTTCTCAACTA 57.921 34.615 0.00 0.00 0.00 2.24
174 175 6.951971 AGTAGCATCTTACCATTTCTCAACT 58.048 36.000 0.00 0.00 0.00 3.16
175 176 7.617041 AAGTAGCATCTTACCATTTCTCAAC 57.383 36.000 0.00 0.00 0.00 3.18
176 177 7.336931 GGAAAGTAGCATCTTACCATTTCTCAA 59.663 37.037 0.00 0.00 0.00 3.02
177 178 6.823689 GGAAAGTAGCATCTTACCATTTCTCA 59.176 38.462 0.00 0.00 0.00 3.27
178 179 6.823689 TGGAAAGTAGCATCTTACCATTTCTC 59.176 38.462 0.00 0.00 0.00 2.87
179 180 6.721318 TGGAAAGTAGCATCTTACCATTTCT 58.279 36.000 0.00 0.00 0.00 2.52
180 181 7.573968 ATGGAAAGTAGCATCTTACCATTTC 57.426 36.000 0.00 0.00 33.88 2.17
181 182 7.836183 AGAATGGAAAGTAGCATCTTACCATTT 59.164 33.333 0.00 0.00 43.72 2.32
182 183 7.349598 AGAATGGAAAGTAGCATCTTACCATT 58.650 34.615 0.00 0.00 45.46 3.16
183 184 6.904626 AGAATGGAAAGTAGCATCTTACCAT 58.095 36.000 0.00 0.00 38.32 3.55
184 185 6.070251 TGAGAATGGAAAGTAGCATCTTACCA 60.070 38.462 0.00 0.00 0.00 3.25
185 186 6.349300 TGAGAATGGAAAGTAGCATCTTACC 58.651 40.000 0.00 0.00 0.00 2.85
186 187 7.849804 TTGAGAATGGAAAGTAGCATCTTAC 57.150 36.000 0.00 0.00 0.00 2.34
187 188 8.103305 AGTTTGAGAATGGAAAGTAGCATCTTA 58.897 33.333 0.00 0.00 0.00 2.10
188 189 6.944862 AGTTTGAGAATGGAAAGTAGCATCTT 59.055 34.615 0.00 0.00 0.00 2.40
189 190 6.479884 AGTTTGAGAATGGAAAGTAGCATCT 58.520 36.000 0.00 0.00 0.00 2.90
190 191 6.749923 AGTTTGAGAATGGAAAGTAGCATC 57.250 37.500 0.00 0.00 0.00 3.91
191 192 8.103305 TCTAAGTTTGAGAATGGAAAGTAGCAT 58.897 33.333 0.00 0.00 0.00 3.79
192 193 7.450074 TCTAAGTTTGAGAATGGAAAGTAGCA 58.550 34.615 0.00 0.00 0.00 3.49
193 194 7.907214 TCTAAGTTTGAGAATGGAAAGTAGC 57.093 36.000 0.00 0.00 0.00 3.58
196 197 8.507249 CGAATTCTAAGTTTGAGAATGGAAAGT 58.493 33.333 3.52 0.00 41.71 2.66
197 198 8.507249 ACGAATTCTAAGTTTGAGAATGGAAAG 58.493 33.333 3.52 0.00 41.71 2.62
198 199 8.391075 ACGAATTCTAAGTTTGAGAATGGAAA 57.609 30.769 3.52 0.00 41.71 3.13
199 200 7.979444 ACGAATTCTAAGTTTGAGAATGGAA 57.021 32.000 3.52 0.00 41.71 3.53
200 201 7.119262 GGAACGAATTCTAAGTTTGAGAATGGA 59.881 37.037 3.52 0.00 41.71 3.41
201 202 7.094805 TGGAACGAATTCTAAGTTTGAGAATGG 60.095 37.037 3.52 1.66 41.71 3.16
202 203 7.806690 TGGAACGAATTCTAAGTTTGAGAATG 58.193 34.615 3.52 0.00 41.71 2.67
203 204 7.979444 TGGAACGAATTCTAAGTTTGAGAAT 57.021 32.000 3.52 0.00 43.88 2.40
204 205 7.659799 TGATGGAACGAATTCTAAGTTTGAGAA 59.340 33.333 3.52 0.00 37.34 2.87
205 206 7.158697 TGATGGAACGAATTCTAAGTTTGAGA 58.841 34.615 3.52 0.00 34.98 3.27
206 207 7.118390 ACTGATGGAACGAATTCTAAGTTTGAG 59.882 37.037 3.52 0.00 34.98 3.02
207 208 6.934645 ACTGATGGAACGAATTCTAAGTTTGA 59.065 34.615 3.52 0.00 34.98 2.69
208 209 7.133891 ACTGATGGAACGAATTCTAAGTTTG 57.866 36.000 3.52 0.00 34.98 2.93
209 210 7.745620 AACTGATGGAACGAATTCTAAGTTT 57.254 32.000 3.52 0.00 34.98 2.66
210 211 7.063074 CGTAACTGATGGAACGAATTCTAAGTT 59.937 37.037 3.52 0.31 37.53 2.66
211 212 6.530534 CGTAACTGATGGAACGAATTCTAAGT 59.469 38.462 3.52 0.00 37.53 2.24
212 213 6.508088 GCGTAACTGATGGAACGAATTCTAAG 60.508 42.308 3.52 0.00 37.53 2.18
213 214 5.290158 GCGTAACTGATGGAACGAATTCTAA 59.710 40.000 3.52 0.00 37.53 2.10
214 215 4.802039 GCGTAACTGATGGAACGAATTCTA 59.198 41.667 3.52 0.00 37.53 2.10
215 216 3.617263 GCGTAACTGATGGAACGAATTCT 59.383 43.478 3.52 0.00 37.53 2.40
216 217 3.242316 GGCGTAACTGATGGAACGAATTC 60.242 47.826 0.00 0.00 37.53 2.17
217 218 2.676342 GGCGTAACTGATGGAACGAATT 59.324 45.455 0.00 0.00 37.53 2.17
218 219 2.093658 AGGCGTAACTGATGGAACGAAT 60.094 45.455 0.00 0.00 37.53 3.34
219 220 1.274167 AGGCGTAACTGATGGAACGAA 59.726 47.619 0.00 0.00 37.53 3.85
220 221 0.892755 AGGCGTAACTGATGGAACGA 59.107 50.000 0.00 0.00 37.53 3.85
221 222 1.393539 CAAGGCGTAACTGATGGAACG 59.606 52.381 0.00 0.00 38.34 3.95
222 223 1.130561 GCAAGGCGTAACTGATGGAAC 59.869 52.381 0.00 0.00 0.00 3.62
223 224 1.003118 AGCAAGGCGTAACTGATGGAA 59.997 47.619 0.00 0.00 0.00 3.53
224 225 0.613260 AGCAAGGCGTAACTGATGGA 59.387 50.000 0.00 0.00 0.00 3.41
225 226 0.729116 CAGCAAGGCGTAACTGATGG 59.271 55.000 3.20 0.00 31.67 3.51
226 227 1.725641 TCAGCAAGGCGTAACTGATG 58.274 50.000 7.08 0.00 34.35 3.07
227 228 2.472695 TTCAGCAAGGCGTAACTGAT 57.527 45.000 10.89 0.00 38.84 2.90
228 229 2.472695 ATTCAGCAAGGCGTAACTGA 57.527 45.000 7.08 7.08 37.38 3.41
229 230 2.855180 CAATTCAGCAAGGCGTAACTG 58.145 47.619 2.95 2.95 0.00 3.16
230 231 1.200020 GCAATTCAGCAAGGCGTAACT 59.800 47.619 0.00 0.00 0.00 2.24
231 232 1.068610 TGCAATTCAGCAAGGCGTAAC 60.069 47.619 0.00 0.00 42.46 2.50
232 233 1.242989 TGCAATTCAGCAAGGCGTAA 58.757 45.000 0.00 0.00 42.46 3.18
233 234 2.939781 TGCAATTCAGCAAGGCGTA 58.060 47.368 0.00 0.00 42.46 4.42
234 235 3.762293 TGCAATTCAGCAAGGCGT 58.238 50.000 0.00 0.00 42.46 5.68
241 242 2.596904 ATCAAGGCATGCAATTCAGC 57.403 45.000 21.36 0.00 0.00 4.26
242 243 5.873179 AAAAATCAAGGCATGCAATTCAG 57.127 34.783 21.36 3.18 0.00 3.02
261 262 4.322349 GGCATACCACCTACATTGCAAAAA 60.322 41.667 1.71 0.00 35.26 1.94
262 263 3.194542 GGCATACCACCTACATTGCAAAA 59.805 43.478 1.71 0.00 35.26 2.44
263 264 2.757868 GGCATACCACCTACATTGCAAA 59.242 45.455 1.71 0.00 35.26 3.68
264 265 2.025416 AGGCATACCACCTACATTGCAA 60.025 45.455 0.00 0.00 39.06 4.08
265 266 1.563879 AGGCATACCACCTACATTGCA 59.436 47.619 0.00 0.00 39.06 4.08
266 267 1.949525 CAGGCATACCACCTACATTGC 59.050 52.381 0.00 0.00 39.06 3.56
267 268 2.092429 ACCAGGCATACCACCTACATTG 60.092 50.000 0.00 0.00 39.06 2.82
268 269 2.092429 CACCAGGCATACCACCTACATT 60.092 50.000 0.00 0.00 39.06 2.71
269 270 1.490490 CACCAGGCATACCACCTACAT 59.510 52.381 0.00 0.00 39.06 2.29
270 271 0.908910 CACCAGGCATACCACCTACA 59.091 55.000 0.00 0.00 39.06 2.74
271 272 0.180406 CCACCAGGCATACCACCTAC 59.820 60.000 0.00 0.00 39.06 3.18
272 273 0.986019 CCCACCAGGCATACCACCTA 60.986 60.000 0.00 0.00 39.06 3.08
273 274 2.308722 CCCACCAGGCATACCACCT 61.309 63.158 0.00 0.00 39.06 4.00
274 275 2.270874 CTCCCACCAGGCATACCACC 62.271 65.000 0.00 0.00 39.06 4.61
275 276 1.224592 CTCCCACCAGGCATACCAC 59.775 63.158 0.00 0.00 39.06 4.16
276 277 1.229820 ACTCCCACCAGGCATACCA 60.230 57.895 0.00 0.00 39.06 3.25
277 278 0.983378 AGACTCCCACCAGGCATACC 60.983 60.000 0.00 0.00 34.51 2.73
278 279 0.912486 AAGACTCCCACCAGGCATAC 59.088 55.000 0.00 0.00 34.51 2.39
279 280 1.204146 GAAGACTCCCACCAGGCATA 58.796 55.000 0.00 0.00 34.51 3.14
280 281 1.903877 CGAAGACTCCCACCAGGCAT 61.904 60.000 0.00 0.00 34.51 4.40
281 282 2.583441 CGAAGACTCCCACCAGGCA 61.583 63.158 0.00 0.00 34.51 4.75
282 283 2.266055 CGAAGACTCCCACCAGGC 59.734 66.667 0.00 0.00 34.51 4.85
283 284 2.660064 CCCGAAGACTCCCACCAGG 61.660 68.421 0.00 0.00 0.00 4.45
284 285 0.978146 ATCCCGAAGACTCCCACCAG 60.978 60.000 0.00 0.00 0.00 4.00
285 286 0.337082 TATCCCGAAGACTCCCACCA 59.663 55.000 0.00 0.00 0.00 4.17
286 287 1.718280 ATATCCCGAAGACTCCCACC 58.282 55.000 0.00 0.00 0.00 4.61
287 288 3.840124 AAATATCCCGAAGACTCCCAC 57.160 47.619 0.00 0.00 0.00 4.61
288 289 3.118038 CCAAAATATCCCGAAGACTCCCA 60.118 47.826 0.00 0.00 0.00 4.37
289 290 3.477530 CCAAAATATCCCGAAGACTCCC 58.522 50.000 0.00 0.00 0.00 4.30
290 291 3.477530 CCCAAAATATCCCGAAGACTCC 58.522 50.000 0.00 0.00 0.00 3.85
291 292 3.477530 CCCCAAAATATCCCGAAGACTC 58.522 50.000 0.00 0.00 0.00 3.36
292 293 2.422945 GCCCCAAAATATCCCGAAGACT 60.423 50.000 0.00 0.00 0.00 3.24
293 294 1.954382 GCCCCAAAATATCCCGAAGAC 59.046 52.381 0.00 0.00 0.00 3.01
294 295 1.566703 TGCCCCAAAATATCCCGAAGA 59.433 47.619 0.00 0.00 0.00 2.87
295 296 1.956477 CTGCCCCAAAATATCCCGAAG 59.044 52.381 0.00 0.00 0.00 3.79
296 297 1.566703 TCTGCCCCAAAATATCCCGAA 59.433 47.619 0.00 0.00 0.00 4.30
297 298 1.217916 TCTGCCCCAAAATATCCCGA 58.782 50.000 0.00 0.00 0.00 5.14
298 299 2.162681 GATCTGCCCCAAAATATCCCG 58.837 52.381 0.00 0.00 0.00 5.14
299 300 2.110721 AGGATCTGCCCCAAAATATCCC 59.889 50.000 0.00 0.00 37.37 3.85
300 301 3.160269 CAGGATCTGCCCCAAAATATCC 58.840 50.000 0.00 0.00 37.37 2.59
313 314 2.421424 GGTTTTGTGCTAGCAGGATCTG 59.579 50.000 20.03 0.00 34.12 2.90
314 315 2.040278 TGGTTTTGTGCTAGCAGGATCT 59.960 45.455 20.03 0.00 0.00 2.75
315 316 2.162408 GTGGTTTTGTGCTAGCAGGATC 59.838 50.000 20.03 6.91 0.00 3.36
316 317 2.162681 GTGGTTTTGTGCTAGCAGGAT 58.837 47.619 20.03 0.00 0.00 3.24
317 318 1.604604 GTGGTTTTGTGCTAGCAGGA 58.395 50.000 20.03 6.77 0.00 3.86
318 319 0.598065 GGTGGTTTTGTGCTAGCAGG 59.402 55.000 20.03 0.00 0.00 4.85
319 320 0.598065 GGGTGGTTTTGTGCTAGCAG 59.402 55.000 20.03 0.00 0.00 4.24
320 321 0.184933 AGGGTGGTTTTGTGCTAGCA 59.815 50.000 14.93 14.93 0.00 3.49
321 322 1.328279 AAGGGTGGTTTTGTGCTAGC 58.672 50.000 8.10 8.10 0.00 3.42
322 323 2.693074 ACAAAGGGTGGTTTTGTGCTAG 59.307 45.455 2.86 0.00 44.57 3.42
323 324 2.691011 GACAAAGGGTGGTTTTGTGCTA 59.309 45.455 7.96 0.00 45.82 3.49
324 325 1.480545 GACAAAGGGTGGTTTTGTGCT 59.519 47.619 7.96 0.00 45.82 4.40
325 326 1.205893 TGACAAAGGGTGGTTTTGTGC 59.794 47.619 7.96 2.12 45.82 4.57
326 327 3.817709 ATGACAAAGGGTGGTTTTGTG 57.182 42.857 7.96 0.00 45.82 3.33
328 329 6.264518 ACTTACTATGACAAAGGGTGGTTTTG 59.735 38.462 0.00 0.00 40.48 2.44
329 330 6.264518 CACTTACTATGACAAAGGGTGGTTTT 59.735 38.462 0.00 0.00 0.00 2.43
330 331 5.768164 CACTTACTATGACAAAGGGTGGTTT 59.232 40.000 0.00 0.00 0.00 3.27
331 332 5.072600 TCACTTACTATGACAAAGGGTGGTT 59.927 40.000 0.00 0.00 0.00 3.67
332 333 4.595781 TCACTTACTATGACAAAGGGTGGT 59.404 41.667 0.00 0.00 0.00 4.16
333 334 4.935808 GTCACTTACTATGACAAAGGGTGG 59.064 45.833 0.34 0.00 44.87 4.61
342 343 6.323266 ACGAATGTGAGTCACTTACTATGAC 58.677 40.000 23.29 6.43 45.70 3.06
343 344 6.510879 ACGAATGTGAGTCACTTACTATGA 57.489 37.500 23.29 1.48 39.07 2.15
359 360 0.744414 CGCCCAATCCTCACGAATGT 60.744 55.000 0.00 0.00 0.00 2.71
360 361 0.461870 TCGCCCAATCCTCACGAATG 60.462 55.000 0.00 0.00 0.00 2.67
361 362 0.469917 ATCGCCCAATCCTCACGAAT 59.530 50.000 0.00 0.00 36.22 3.34
362 363 0.461870 CATCGCCCAATCCTCACGAA 60.462 55.000 0.00 0.00 36.22 3.85
363 364 1.143838 CATCGCCCAATCCTCACGA 59.856 57.895 0.00 0.00 37.15 4.35
364 365 1.153369 ACATCGCCCAATCCTCACG 60.153 57.895 0.00 0.00 0.00 4.35
365 366 0.392998 ACACATCGCCCAATCCTCAC 60.393 55.000 0.00 0.00 0.00 3.51
366 367 0.392863 CACACATCGCCCAATCCTCA 60.393 55.000 0.00 0.00 0.00 3.86
367 368 1.097547 CCACACATCGCCCAATCCTC 61.098 60.000 0.00 0.00 0.00 3.71
368 369 1.077501 CCACACATCGCCCAATCCT 60.078 57.895 0.00 0.00 0.00 3.24
369 370 1.378514 ACCACACATCGCCCAATCC 60.379 57.895 0.00 0.00 0.00 3.01
370 371 0.960364 ACACCACACATCGCCCAATC 60.960 55.000 0.00 0.00 0.00 2.67
371 372 1.074775 ACACCACACATCGCCCAAT 59.925 52.632 0.00 0.00 0.00 3.16
372 373 1.896183 CACACCACACATCGCCCAA 60.896 57.895 0.00 0.00 0.00 4.12
373 374 2.281414 CACACCACACATCGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
374 375 2.031919 TCACACCACACATCGCCC 59.968 61.111 0.00 0.00 0.00 6.13
375 376 2.680913 GCTCACACCACACATCGCC 61.681 63.158 0.00 0.00 0.00 5.54
376 377 1.669115 AGCTCACACCACACATCGC 60.669 57.895 0.00 0.00 0.00 4.58
377 378 0.319813 TCAGCTCACACCACACATCG 60.320 55.000 0.00 0.00 0.00 3.84
378 379 2.105006 ATCAGCTCACACCACACATC 57.895 50.000 0.00 0.00 0.00 3.06
379 380 2.574006 AATCAGCTCACACCACACAT 57.426 45.000 0.00 0.00 0.00 3.21
380 381 2.346766 AAATCAGCTCACACCACACA 57.653 45.000 0.00 0.00 0.00 3.72
381 382 4.065088 TCTTAAATCAGCTCACACCACAC 58.935 43.478 0.00 0.00 0.00 3.82
382 383 4.350368 TCTTAAATCAGCTCACACCACA 57.650 40.909 0.00 0.00 0.00 4.17
383 384 5.239525 AGTTTCTTAAATCAGCTCACACCAC 59.760 40.000 0.00 0.00 0.00 4.16
384 385 5.239306 CAGTTTCTTAAATCAGCTCACACCA 59.761 40.000 0.00 0.00 0.00 4.17
385 386 5.693814 CAGTTTCTTAAATCAGCTCACACC 58.306 41.667 0.00 0.00 0.00 4.16
386 387 5.149977 GCAGTTTCTTAAATCAGCTCACAC 58.850 41.667 0.00 0.00 0.00 3.82
387 388 4.821260 TGCAGTTTCTTAAATCAGCTCACA 59.179 37.500 0.00 0.00 0.00 3.58
388 389 5.362556 TGCAGTTTCTTAAATCAGCTCAC 57.637 39.130 0.00 0.00 0.00 3.51
389 390 5.942236 AGATGCAGTTTCTTAAATCAGCTCA 59.058 36.000 0.00 0.00 0.00 4.26
390 391 6.434018 AGATGCAGTTTCTTAAATCAGCTC 57.566 37.500 0.00 0.00 0.00 4.09
391 392 6.208204 ACAAGATGCAGTTTCTTAAATCAGCT 59.792 34.615 0.83 0.00 32.27 4.24
392 393 6.307318 CACAAGATGCAGTTTCTTAAATCAGC 59.693 38.462 0.83 0.00 32.27 4.26
393 394 7.587629 TCACAAGATGCAGTTTCTTAAATCAG 58.412 34.615 0.83 0.00 32.27 2.90
394 395 7.509141 TCACAAGATGCAGTTTCTTAAATCA 57.491 32.000 0.83 0.00 32.27 2.57
395 396 9.713740 CTATCACAAGATGCAGTTTCTTAAATC 57.286 33.333 0.83 0.00 35.67 2.17
396 397 9.236006 ACTATCACAAGATGCAGTTTCTTAAAT 57.764 29.630 0.83 0.00 35.67 1.40
397 398 8.621532 ACTATCACAAGATGCAGTTTCTTAAA 57.378 30.769 0.83 0.00 35.67 1.52
398 399 9.890629 ATACTATCACAAGATGCAGTTTCTTAA 57.109 29.630 0.83 0.00 35.67 1.85
399 400 9.890629 AATACTATCACAAGATGCAGTTTCTTA 57.109 29.630 0.83 0.00 35.67 2.10
400 401 8.798859 AATACTATCACAAGATGCAGTTTCTT 57.201 30.769 0.00 0.00 35.67 2.52
401 402 8.798859 AAATACTATCACAAGATGCAGTTTCT 57.201 30.769 0.00 0.00 35.67 2.52
402 403 9.846248 AAAAATACTATCACAAGATGCAGTTTC 57.154 29.630 0.00 0.00 35.67 2.78
403 404 9.846248 GAAAAATACTATCACAAGATGCAGTTT 57.154 29.630 0.00 0.00 35.67 2.66
404 405 9.236006 AGAAAAATACTATCACAAGATGCAGTT 57.764 29.630 0.00 0.00 35.67 3.16
405 406 8.798859 AGAAAAATACTATCACAAGATGCAGT 57.201 30.769 0.00 0.00 35.67 4.40
429 430 9.062674 CGTTTGTATGTGATCCGTTATCTATAG 57.937 37.037 0.00 0.00 35.45 1.31
430 431 8.024865 CCGTTTGTATGTGATCCGTTATCTATA 58.975 37.037 0.00 0.00 35.45 1.31
431 432 6.866770 CCGTTTGTATGTGATCCGTTATCTAT 59.133 38.462 0.00 0.00 35.45 1.98
432 433 6.039605 TCCGTTTGTATGTGATCCGTTATCTA 59.960 38.462 0.00 0.00 35.45 1.98
433 434 5.047847 CCGTTTGTATGTGATCCGTTATCT 58.952 41.667 0.00 0.00 35.45 1.98
434 435 5.045215 TCCGTTTGTATGTGATCCGTTATC 58.955 41.667 0.00 0.00 34.93 1.75
435 436 5.013568 TCCGTTTGTATGTGATCCGTTAT 57.986 39.130 0.00 0.00 0.00 1.89
436 437 4.453177 TCCGTTTGTATGTGATCCGTTA 57.547 40.909 0.00 0.00 0.00 3.18
437 438 3.322211 TCCGTTTGTATGTGATCCGTT 57.678 42.857 0.00 0.00 0.00 4.44
438 439 3.536956 ATCCGTTTGTATGTGATCCGT 57.463 42.857 0.00 0.00 0.00 4.69
439 440 4.260620 GGAAATCCGTTTGTATGTGATCCG 60.261 45.833 0.00 0.00 0.00 4.18
440 441 4.881850 AGGAAATCCGTTTGTATGTGATCC 59.118 41.667 0.00 0.00 42.08 3.36
441 442 6.093495 TGAAGGAAATCCGTTTGTATGTGATC 59.907 38.462 0.00 0.00 42.08 2.92
442 443 5.943416 TGAAGGAAATCCGTTTGTATGTGAT 59.057 36.000 0.00 0.00 42.08 3.06
443 444 5.309638 TGAAGGAAATCCGTTTGTATGTGA 58.690 37.500 0.00 0.00 42.08 3.58
444 445 5.621197 TGAAGGAAATCCGTTTGTATGTG 57.379 39.130 0.00 0.00 42.08 3.21
445 446 4.156008 GCTGAAGGAAATCCGTTTGTATGT 59.844 41.667 0.00 0.00 42.08 2.29
446 447 4.662145 GCTGAAGGAAATCCGTTTGTATG 58.338 43.478 0.00 0.00 42.08 2.39
447 448 3.374058 CGCTGAAGGAAATCCGTTTGTAT 59.626 43.478 0.00 0.00 42.08 2.29
448 449 2.739913 CGCTGAAGGAAATCCGTTTGTA 59.260 45.455 0.00 0.00 42.08 2.41
449 450 1.535462 CGCTGAAGGAAATCCGTTTGT 59.465 47.619 0.00 0.00 42.08 2.83
450 451 1.804151 TCGCTGAAGGAAATCCGTTTG 59.196 47.619 0.00 0.00 42.08 2.93
451 452 2.178912 TCGCTGAAGGAAATCCGTTT 57.821 45.000 0.00 0.00 42.08 3.60
452 453 2.403252 ATCGCTGAAGGAAATCCGTT 57.597 45.000 0.00 0.00 42.08 4.44
453 454 2.803492 GCTATCGCTGAAGGAAATCCGT 60.803 50.000 0.00 0.00 42.08 4.69
454 455 1.795286 GCTATCGCTGAAGGAAATCCG 59.205 52.381 0.00 0.00 42.08 4.18
455 456 1.795286 CGCTATCGCTGAAGGAAATCC 59.205 52.381 0.00 0.00 0.00 3.01
468 469 7.115805 TGGAAATTATACAACTTAGCGCTATCG 59.884 37.037 19.60 14.75 39.07 2.92
469 470 8.306680 TGGAAATTATACAACTTAGCGCTATC 57.693 34.615 19.60 7.60 0.00 2.08
470 471 7.387948 CCTGGAAATTATACAACTTAGCGCTAT 59.612 37.037 19.60 5.23 0.00 2.97
471 472 6.704493 CCTGGAAATTATACAACTTAGCGCTA 59.296 38.462 14.45 14.45 0.00 4.26
472 473 5.527582 CCTGGAAATTATACAACTTAGCGCT 59.472 40.000 17.26 17.26 0.00 5.92
473 474 5.296035 ACCTGGAAATTATACAACTTAGCGC 59.704 40.000 0.00 0.00 0.00 5.92
474 475 6.920569 ACCTGGAAATTATACAACTTAGCG 57.079 37.500 0.00 0.00 0.00 4.26
475 476 8.398665 CAGAACCTGGAAATTATACAACTTAGC 58.601 37.037 0.00 0.00 0.00 3.09
476 477 8.398665 GCAGAACCTGGAAATTATACAACTTAG 58.601 37.037 0.00 0.00 31.21 2.18
477 478 7.338449 GGCAGAACCTGGAAATTATACAACTTA 59.662 37.037 0.00 0.00 34.51 2.24
478 479 6.152831 GGCAGAACCTGGAAATTATACAACTT 59.847 38.462 0.00 0.00 34.51 2.66
479 480 5.652452 GGCAGAACCTGGAAATTATACAACT 59.348 40.000 0.00 0.00 34.51 3.16
480 481 5.417580 TGGCAGAACCTGGAAATTATACAAC 59.582 40.000 0.00 0.00 40.22 3.32
481 482 5.417580 GTGGCAGAACCTGGAAATTATACAA 59.582 40.000 0.00 0.00 40.22 2.41
482 483 4.947388 GTGGCAGAACCTGGAAATTATACA 59.053 41.667 0.00 0.00 40.22 2.29
483 484 4.338400 GGTGGCAGAACCTGGAAATTATAC 59.662 45.833 0.00 0.00 40.22 1.47
484 485 4.532834 GGTGGCAGAACCTGGAAATTATA 58.467 43.478 0.00 0.00 40.22 0.98
485 486 3.365472 GGTGGCAGAACCTGGAAATTAT 58.635 45.455 0.00 0.00 40.22 1.28
486 487 2.802719 GGTGGCAGAACCTGGAAATTA 58.197 47.619 0.00 0.00 40.22 1.40
487 488 1.632589 GGTGGCAGAACCTGGAAATT 58.367 50.000 0.00 0.00 40.22 1.82
488 489 3.363787 GGTGGCAGAACCTGGAAAT 57.636 52.632 0.00 0.00 40.22 2.17
489 490 4.920828 GGTGGCAGAACCTGGAAA 57.079 55.556 0.00 0.00 40.22 3.13
495 496 0.804989 CATTCGAAGGTGGCAGAACC 59.195 55.000 3.35 0.00 40.85 3.62
496 497 1.197721 CACATTCGAAGGTGGCAGAAC 59.802 52.381 30.00 0.00 37.08 3.01
497 498 1.071542 TCACATTCGAAGGTGGCAGAA 59.928 47.619 34.51 17.85 40.78 3.02
498 499 0.684535 TCACATTCGAAGGTGGCAGA 59.315 50.000 34.51 18.19 40.78 4.26
499 500 0.798776 GTCACATTCGAAGGTGGCAG 59.201 55.000 34.73 15.67 43.99 4.85
500 501 0.396435 AGTCACATTCGAAGGTGGCA 59.604 50.000 38.58 21.81 46.65 4.92
501 502 0.798776 CAGTCACATTCGAAGGTGGC 59.201 55.000 33.36 33.36 44.81 5.01
502 503 1.001974 TCCAGTCACATTCGAAGGTGG 59.998 52.381 34.51 22.68 40.78 4.61
503 504 2.341257 CTCCAGTCACATTCGAAGGTG 58.659 52.381 31.34 31.34 41.69 4.00
504 505 1.338200 GCTCCAGTCACATTCGAAGGT 60.338 52.381 10.11 10.11 0.00 3.50
505 506 1.363744 GCTCCAGTCACATTCGAAGG 58.636 55.000 8.51 8.51 0.00 3.46
506 507 0.994995 CGCTCCAGTCACATTCGAAG 59.005 55.000 3.35 0.00 0.00 3.79
507 508 1.014044 GCGCTCCAGTCACATTCGAA 61.014 55.000 0.00 0.00 0.00 3.71
508 509 1.446099 GCGCTCCAGTCACATTCGA 60.446 57.895 0.00 0.00 0.00 3.71
509 510 1.016130 AAGCGCTCCAGTCACATTCG 61.016 55.000 12.06 0.00 0.00 3.34
510 511 0.723981 GAAGCGCTCCAGTCACATTC 59.276 55.000 12.06 0.00 0.00 2.67
511 512 0.035317 TGAAGCGCTCCAGTCACATT 59.965 50.000 12.06 0.00 0.00 2.71
512 513 0.251354 ATGAAGCGCTCCAGTCACAT 59.749 50.000 12.06 5.53 0.00 3.21
513 514 0.894835 TATGAAGCGCTCCAGTCACA 59.105 50.000 12.06 0.00 0.00 3.58
514 515 2.231215 ATATGAAGCGCTCCAGTCAC 57.769 50.000 12.06 0.00 0.00 3.67
515 516 2.297315 CCTATATGAAGCGCTCCAGTCA 59.703 50.000 12.06 11.81 0.00 3.41
516 517 2.928731 GCCTATATGAAGCGCTCCAGTC 60.929 54.545 12.06 4.84 0.00 3.51
517 518 1.001406 GCCTATATGAAGCGCTCCAGT 59.999 52.381 12.06 0.00 0.00 4.00
518 519 1.674221 GGCCTATATGAAGCGCTCCAG 60.674 57.143 12.06 1.52 0.00 3.86
519 520 0.321671 GGCCTATATGAAGCGCTCCA 59.678 55.000 12.06 3.50 0.00 3.86
520 521 0.321671 TGGCCTATATGAAGCGCTCC 59.678 55.000 12.06 0.00 0.00 4.70
521 522 2.005451 CATGGCCTATATGAAGCGCTC 58.995 52.381 12.06 4.99 0.00 5.03
522 523 1.947678 GCATGGCCTATATGAAGCGCT 60.948 52.381 2.64 2.64 0.00 5.92
523 524 0.449388 GCATGGCCTATATGAAGCGC 59.551 55.000 3.32 0.00 0.00 5.92
524 525 1.466167 GTGCATGGCCTATATGAAGCG 59.534 52.381 3.32 0.00 0.00 4.68
525 526 2.787994 AGTGCATGGCCTATATGAAGC 58.212 47.619 3.32 0.00 0.00 3.86
526 527 4.389992 CGTAAGTGCATGGCCTATATGAAG 59.610 45.833 3.32 0.00 0.00 3.02
527 528 4.314961 CGTAAGTGCATGGCCTATATGAA 58.685 43.478 3.32 0.00 0.00 2.57
528 529 3.306710 CCGTAAGTGCATGGCCTATATGA 60.307 47.826 3.32 0.00 0.00 2.15
529 530 3.002791 CCGTAAGTGCATGGCCTATATG 58.997 50.000 3.32 0.00 0.00 1.78
530 531 2.615493 GCCGTAAGTGCATGGCCTATAT 60.615 50.000 3.32 0.00 43.65 0.86
531 532 1.270625 GCCGTAAGTGCATGGCCTATA 60.271 52.381 3.32 0.00 43.65 1.31
532 533 0.535102 GCCGTAAGTGCATGGCCTAT 60.535 55.000 3.32 0.00 43.65 2.57
533 534 1.153249 GCCGTAAGTGCATGGCCTA 60.153 57.895 3.32 0.00 43.65 3.93
534 535 2.438434 GCCGTAAGTGCATGGCCT 60.438 61.111 3.32 0.00 43.65 5.19
537 538 0.461870 TAGCAGCCGTAAGTGCATGG 60.462 55.000 0.00 0.00 42.47 3.66
538 539 1.586422 ATAGCAGCCGTAAGTGCATG 58.414 50.000 0.00 0.00 42.47 4.06
539 540 2.628178 TCTATAGCAGCCGTAAGTGCAT 59.372 45.455 0.00 0.00 42.47 3.96
540 541 2.028876 TCTATAGCAGCCGTAAGTGCA 58.971 47.619 0.00 0.00 42.47 4.57
541 542 2.608261 CCTCTATAGCAGCCGTAAGTGC 60.608 54.545 0.00 0.00 40.17 4.40
542 543 2.623889 ACCTCTATAGCAGCCGTAAGTG 59.376 50.000 0.00 0.00 0.00 3.16
543 544 2.946785 ACCTCTATAGCAGCCGTAAGT 58.053 47.619 0.00 0.00 0.00 2.24
544 545 5.183331 TGAATACCTCTATAGCAGCCGTAAG 59.817 44.000 0.00 0.00 0.00 2.34
545 546 5.074804 TGAATACCTCTATAGCAGCCGTAA 58.925 41.667 0.00 0.00 0.00 3.18
546 547 4.659115 TGAATACCTCTATAGCAGCCGTA 58.341 43.478 0.00 0.00 0.00 4.02
547 548 3.497332 TGAATACCTCTATAGCAGCCGT 58.503 45.455 0.00 0.00 0.00 5.68
548 549 4.158579 TGATGAATACCTCTATAGCAGCCG 59.841 45.833 0.00 0.00 0.00 5.52
549 550 5.667539 TGATGAATACCTCTATAGCAGCC 57.332 43.478 0.00 0.00 0.00 4.85
550 551 6.871844 TGATGATGAATACCTCTATAGCAGC 58.128 40.000 0.00 0.00 0.00 5.25
551 552 9.315525 CATTGATGATGAATACCTCTATAGCAG 57.684 37.037 0.00 0.00 38.03 4.24
552 553 8.262933 CCATTGATGATGAATACCTCTATAGCA 58.737 37.037 0.00 0.00 38.03 3.49
553 554 8.481314 TCCATTGATGATGAATACCTCTATAGC 58.519 37.037 0.00 0.00 38.03 2.97
555 556 9.552695 ACTCCATTGATGATGAATACCTCTATA 57.447 33.333 0.00 0.00 38.03 1.31
556 557 8.446714 ACTCCATTGATGATGAATACCTCTAT 57.553 34.615 0.00 0.00 38.03 1.98
557 558 7.862274 ACTCCATTGATGATGAATACCTCTA 57.138 36.000 0.00 0.00 38.03 2.43
558 559 6.760440 ACTCCATTGATGATGAATACCTCT 57.240 37.500 0.00 0.00 38.03 3.69
559 560 9.512588 AAATACTCCATTGATGATGAATACCTC 57.487 33.333 0.00 0.00 38.03 3.85
564 565 9.645128 TGGTTAAATACTCCATTGATGATGAAT 57.355 29.630 0.00 0.00 38.03 2.57
565 566 9.473007 TTGGTTAAATACTCCATTGATGATGAA 57.527 29.630 0.00 0.00 38.03 2.57
566 567 9.473007 TTTGGTTAAATACTCCATTGATGATGA 57.527 29.630 0.00 0.00 38.03 2.92
569 570 9.921637 GTTTTTGGTTAAATACTCCATTGATGA 57.078 29.630 0.00 0.00 0.00 2.92
570 571 9.927668 AGTTTTTGGTTAAATACTCCATTGATG 57.072 29.630 0.00 0.00 34.37 3.07
573 574 9.634163 GGTAGTTTTTGGTTAAATACTCCATTG 57.366 33.333 0.00 0.00 38.47 2.82
574 575 9.369672 TGGTAGTTTTTGGTTAAATACTCCATT 57.630 29.630 0.00 0.00 38.47 3.16
575 576 8.799367 GTGGTAGTTTTTGGTTAAATACTCCAT 58.201 33.333 0.00 0.00 38.47 3.41
576 577 7.778853 TGTGGTAGTTTTTGGTTAAATACTCCA 59.221 33.333 0.00 0.00 38.47 3.86
627 628 2.598907 CGCACAAAAACGTAGAGTGGTG 60.599 50.000 10.86 6.57 0.00 4.17
1577 1795 9.057089 CCTACTCTGTTCTTTTTCAGTTAACAT 57.943 33.333 8.61 0.00 33.89 2.71
1875 2093 2.010067 CCAAGGACCATCCACCCAT 58.990 57.895 0.00 0.00 39.61 4.00
2257 2475 0.995024 CCCTCCACTTCCTTCATGGT 59.005 55.000 0.00 0.00 37.07 3.55
2857 3114 2.959516 TCAGTTTCGTCAGGCACTATG 58.040 47.619 0.00 0.00 36.02 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.