Multiple sequence alignment - TraesCS5A01G046100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G046100 chr5A 100.000 5064 0 0 1 5064 41423465 41428528 0.000000e+00 9352.0
1 TraesCS5A01G046100 chr5D 92.621 1721 86 15 1332 3034 52282034 52283731 0.000000e+00 2436.0
2 TraesCS5A01G046100 chr5D 90.951 1735 79 24 3147 4863 52283727 52285401 0.000000e+00 2263.0
3 TraesCS5A01G046100 chr5D 92.533 1058 58 8 166 1215 52280790 52281834 0.000000e+00 1496.0
4 TraesCS5A01G046100 chr5D 93.268 921 44 7 3956 4863 52287745 52288660 0.000000e+00 1341.0
5 TraesCS5A01G046100 chr5D 92.333 300 20 3 3662 3959 52286818 52287116 1.690000e-114 424.0
6 TraesCS5A01G046100 chr5D 89.655 145 10 3 4919 5062 52285412 52285552 4.030000e-41 180.0
7 TraesCS5A01G046100 chr5D 89.116 147 10 5 4919 5064 52288670 52288811 1.450000e-40 178.0
8 TraesCS5A01G046100 chr5D 94.017 117 6 1 1217 1333 52281869 52281984 5.210000e-40 176.0
9 TraesCS5A01G046100 chr5D 89.247 93 10 0 1 93 52280397 52280489 3.200000e-22 117.0
10 TraesCS5A01G046100 chr5B 92.228 1737 89 19 3147 4863 55373616 55375326 0.000000e+00 2418.0
11 TraesCS5A01G046100 chr5B 91.831 1726 96 14 1332 3034 55371917 55373620 0.000000e+00 2364.0
12 TraesCS5A01G046100 chr5B 91.095 1224 71 19 1 1216 55370526 55371719 0.000000e+00 1622.0
13 TraesCS5A01G046100 chr5B 90.845 142 7 5 4924 5064 55375340 55375476 8.660000e-43 185.0
14 TraesCS5A01G046100 chr5B 94.872 117 5 1 1217 1333 55371752 55371867 1.120000e-41 182.0
15 TraesCS5A01G046100 chrUn 96.685 362 6 3 2674 3034 477541978 477541622 9.380000e-167 597.0
16 TraesCS5A01G046100 chr2A 91.228 114 6 2 436 546 170470391 170470503 8.780000e-33 152.0
17 TraesCS5A01G046100 chr2A 89.720 107 7 3 436 539 559118410 559118515 3.180000e-27 134.0
18 TraesCS5A01G046100 chr7A 91.589 107 5 3 436 539 48103180 48103075 1.470000e-30 145.0
19 TraesCS5A01G046100 chr2B 91.589 107 5 3 436 539 216462808 216462913 1.470000e-30 145.0
20 TraesCS5A01G046100 chr3D 88.235 119 13 1 3032 3150 336588370 336588253 1.900000e-29 141.0
21 TraesCS5A01G046100 chr1D 89.474 114 7 4 3040 3151 70455708 70455818 6.840000e-29 139.0
22 TraesCS5A01G046100 chr1D 88.991 109 7 4 432 537 345266778 345266672 4.110000e-26 130.0
23 TraesCS5A01G046100 chr1D 88.288 111 8 4 432 539 128529214 128529106 1.480000e-25 128.0
24 TraesCS5A01G046100 chr1D 84.112 107 15 2 3047 3153 141715337 141715233 8.970000e-18 102.0
25 TraesCS5A01G046100 chr1D 95.122 41 2 0 3043 3083 331284579 331284619 1.180000e-06 65.8
26 TraesCS5A01G046100 chr1B 90.654 107 6 3 436 539 160325218 160325323 6.840000e-29 139.0
27 TraesCS5A01G046100 chr6D 86.885 122 12 4 3032 3153 451795778 451795895 3.180000e-27 134.0
28 TraesCS5A01G046100 chr6D 83.193 119 18 2 3032 3150 329858594 329858710 1.930000e-19 108.0
29 TraesCS5A01G046100 chr2D 83.193 119 18 2 3032 3150 305940139 305940255 1.930000e-19 108.0
30 TraesCS5A01G046100 chr1A 84.337 83 11 2 4799 4879 527789694 527789612 4.200000e-11 80.5
31 TraesCS5A01G046100 chr7D 85.000 80 8 4 3032 3110 10877628 10877704 1.510000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G046100 chr5A 41423465 41428528 5063 False 9352.000000 9352 100.000000 1 5064 1 chr5A.!!$F1 5063
1 TraesCS5A01G046100 chr5D 52280397 52288811 8414 False 956.777778 2436 91.526778 1 5064 9 chr5D.!!$F1 5063
2 TraesCS5A01G046100 chr5B 55370526 55375476 4950 False 1354.200000 2418 92.174200 1 5064 5 chr5B.!!$F1 5063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.031857 TGTTCAAGCAAATGCACCGG 59.968 50.0 8.28 0.0 45.16 5.28 F
2036 2388 0.255890 ATTCCTGCAACACCGCCTAT 59.744 50.0 0.00 0.0 0.00 2.57 F
3044 3408 0.252558 TCCAAGTACTCCCCCTGTCC 60.253 60.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2082 2442 0.036022 GGCAGAGCAGGAAAGTCAGT 59.964 55.0 0.0 0.0 0.0 3.41 R
3891 4280 0.034670 GCACTCCCAGGCAGAAAGAT 60.035 55.0 0.0 0.0 0.0 2.40 R
4864 8502 0.178990 GCAGTTTCTTCAGTGGGGGT 60.179 55.0 0.0 0.0 0.0 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.335132 TGACGGAATAGAGGGTGGGC 61.335 60.000 0.00 0.00 0.00 5.36
87 88 3.877508 GGGTGTAGGATTCTCGAAATTGG 59.122 47.826 0.00 0.00 0.00 3.16
108 109 1.340889 TCCTGTTCAAGCAAATGCACC 59.659 47.619 8.28 0.00 45.16 5.01
109 110 1.411394 CTGTTCAAGCAAATGCACCG 58.589 50.000 8.28 0.00 45.16 4.94
110 111 0.031857 TGTTCAAGCAAATGCACCGG 59.968 50.000 8.28 0.00 45.16 5.28
111 112 0.313672 GTTCAAGCAAATGCACCGGA 59.686 50.000 9.46 0.00 45.16 5.14
112 113 0.597568 TTCAAGCAAATGCACCGGAG 59.402 50.000 9.46 0.00 45.16 4.63
128 129 4.855230 AGGGGTGGGTGTGGGTGT 62.855 66.667 0.00 0.00 0.00 4.16
129 130 4.596585 GGGGTGGGTGTGGGTGTG 62.597 72.222 0.00 0.00 0.00 3.82
152 392 4.718940 GGGGGTGTTCATTTATCTTGTG 57.281 45.455 0.00 0.00 0.00 3.33
154 394 5.258051 GGGGGTGTTCATTTATCTTGTGTA 58.742 41.667 0.00 0.00 0.00 2.90
155 395 5.124936 GGGGGTGTTCATTTATCTTGTGTAC 59.875 44.000 0.00 0.00 0.00 2.90
156 396 5.163794 GGGGTGTTCATTTATCTTGTGTACG 60.164 44.000 0.00 0.00 0.00 3.67
157 397 5.321516 GGTGTTCATTTATCTTGTGTACGC 58.678 41.667 0.00 0.00 0.00 4.42
158 398 5.321516 GTGTTCATTTATCTTGTGTACGCC 58.678 41.667 3.51 0.00 0.00 5.68
159 399 5.121768 GTGTTCATTTATCTTGTGTACGCCT 59.878 40.000 3.51 0.00 0.00 5.52
160 400 5.350365 TGTTCATTTATCTTGTGTACGCCTC 59.650 40.000 3.51 0.00 0.00 4.70
161 401 5.339008 TCATTTATCTTGTGTACGCCTCT 57.661 39.130 3.51 0.00 0.00 3.69
162 402 6.459670 TCATTTATCTTGTGTACGCCTCTA 57.540 37.500 3.51 0.00 0.00 2.43
163 403 6.504398 TCATTTATCTTGTGTACGCCTCTAG 58.496 40.000 3.51 0.00 0.00 2.43
164 404 4.913335 TTATCTTGTGTACGCCTCTAGG 57.087 45.455 3.51 0.00 38.53 3.02
180 420 0.911769 TAGGGTGTGGAGCAATCTGG 59.088 55.000 0.00 0.00 0.00 3.86
181 421 1.136329 AGGGTGTGGAGCAATCTGGT 61.136 55.000 0.00 0.00 0.00 4.00
182 422 0.618458 GGGTGTGGAGCAATCTGGTA 59.382 55.000 0.00 0.00 0.00 3.25
189 429 4.141937 TGTGGAGCAATCTGGTACTATGAC 60.142 45.833 0.00 0.00 28.14 3.06
214 454 6.043411 GCAGTTTCTAGGTAAGATGATTCGT 58.957 40.000 0.00 0.00 33.05 3.85
215 455 7.201145 GCAGTTTCTAGGTAAGATGATTCGTA 58.799 38.462 0.00 0.00 33.05 3.43
246 487 1.867233 CCGATTATTTGCTCACGGAGG 59.133 52.381 0.00 0.00 42.40 4.30
247 488 1.867233 CGATTATTTGCTCACGGAGGG 59.133 52.381 3.56 0.00 0.00 4.30
248 489 2.222027 GATTATTTGCTCACGGAGGGG 58.778 52.381 3.56 0.00 0.00 4.79
270 513 2.352503 AAAACTGAATGTCATGCCGC 57.647 45.000 0.00 0.00 0.00 6.53
275 518 0.391793 TGAATGTCATGCCGCCGTTA 60.392 50.000 0.00 0.00 0.00 3.18
301 544 4.701956 ATTAGGATGTTTTCGTTGGCAG 57.298 40.909 0.00 0.00 0.00 4.85
302 545 1.981256 AGGATGTTTTCGTTGGCAGT 58.019 45.000 0.00 0.00 0.00 4.40
303 546 1.608590 AGGATGTTTTCGTTGGCAGTG 59.391 47.619 0.00 0.00 0.00 3.66
304 547 1.606668 GGATGTTTTCGTTGGCAGTGA 59.393 47.619 0.00 0.00 0.00 3.41
305 548 2.034053 GGATGTTTTCGTTGGCAGTGAA 59.966 45.455 0.00 0.01 0.00 3.18
306 549 2.842208 TGTTTTCGTTGGCAGTGAAG 57.158 45.000 0.00 0.00 0.00 3.02
307 550 2.360844 TGTTTTCGTTGGCAGTGAAGA 58.639 42.857 0.00 0.00 0.00 2.87
312 561 2.905075 TCGTTGGCAGTGAAGATATGG 58.095 47.619 0.00 0.00 0.00 2.74
349 598 0.950836 TGCCGTGATTTCACAACCTG 59.049 50.000 11.02 0.00 46.75 4.00
365 614 6.483307 TCACAACCTGTACTTGAGAAGAAATG 59.517 38.462 0.73 0.00 0.00 2.32
385 634 1.399791 GCATTGTCTAGCTTGCTCACC 59.600 52.381 0.00 0.00 32.41 4.02
414 663 0.979665 ATGGTCCGGCATAGATCCTG 59.020 55.000 0.00 0.00 0.00 3.86
504 756 5.569441 CGTATTTCAGTGCTAGATACATCCG 59.431 44.000 0.00 0.00 0.00 4.18
513 765 2.225068 AGATACATCCGGTTTGAGCG 57.775 50.000 13.00 0.00 39.06 5.03
520 772 0.878523 TCCGGTTTGAGCGTCAACTG 60.879 55.000 0.00 0.00 35.89 3.16
539 791 1.550524 TGATTCAGGACGGAGGAAGTG 59.449 52.381 0.00 0.00 0.00 3.16
571 823 6.754675 TGTATGAATGCTTGCAATTTCAGATG 59.245 34.615 18.53 1.00 32.13 2.90
578 830 6.460781 TGCTTGCAATTTCAGATGATTTTCT 58.539 32.000 0.00 0.00 0.00 2.52
604 856 1.345415 GGACCTGGGTTACTGTTTCGA 59.655 52.381 0.00 0.00 0.00 3.71
620 872 1.014044 TCGATCGGCTGACACTTTGC 61.014 55.000 16.41 0.00 0.00 3.68
675 927 6.489675 CATTTTATGATCGGAGAACTTGTGG 58.510 40.000 0.00 0.00 43.58 4.17
772 1024 1.369839 GCCACGGCTCTAAGGAAAGC 61.370 60.000 0.00 0.00 38.26 3.51
787 1039 1.944709 GAAAGCAACCCGTGTTACACT 59.055 47.619 13.86 0.00 32.09 3.55
796 1048 2.354403 CCCGTGTTACACTAAGAAGGGG 60.354 54.545 13.86 10.48 43.71 4.79
800 1052 4.021719 CGTGTTACACTAAGAAGGGGAAGA 60.022 45.833 13.86 0.00 25.87 2.87
899 1151 0.399833 GGGGGCATCCTTCTGATCTC 59.600 60.000 0.00 0.00 35.33 2.75
926 1178 4.962836 GCTGGTGGTGGTGCTGCT 62.963 66.667 0.00 0.00 0.00 4.24
927 1179 2.981909 CTGGTGGTGGTGCTGCTG 60.982 66.667 0.00 0.00 0.00 4.41
955 1207 4.226168 AGTCTGAAGTAGGCCTTTAGCATT 59.774 41.667 12.58 0.00 46.50 3.56
1059 1311 2.298446 TCACAGCAAGAACTCTCCTCTG 59.702 50.000 0.00 0.00 0.00 3.35
1106 1358 6.607735 ATGCTTTGAACTTCCAAATGTTTG 57.392 33.333 0.00 0.00 35.72 2.93
1111 1363 6.522625 TTGAACTTCCAAATGTTTGTCTCA 57.477 33.333 4.92 0.00 36.45 3.27
1115 1367 8.690884 TGAACTTCCAAATGTTTGTCTCATTTA 58.309 29.630 4.92 0.00 41.58 1.40
1117 1369 8.463930 ACTTCCAAATGTTTGTCTCATTTAGA 57.536 30.769 4.92 0.83 41.58 2.10
1173 1427 4.853924 TGAATTTCTTCTTTGGCCTGTC 57.146 40.909 3.32 0.00 32.29 3.51
1180 1434 4.142038 TCTTCTTTGGCCTGTCTAAAACC 58.858 43.478 3.32 0.00 0.00 3.27
1181 1435 3.586470 TCTTTGGCCTGTCTAAAACCA 57.414 42.857 3.32 0.00 0.00 3.67
1192 1446 6.826741 GCCTGTCTAAAACCATAATTGTCCTA 59.173 38.462 0.00 0.00 0.00 2.94
1209 1463 2.500098 TCCTATACACTGTTCTGGCACC 59.500 50.000 0.00 0.00 0.00 5.01
1216 1470 1.134175 ACTGTTCTGGCACCAAAAACG 59.866 47.619 9.03 7.17 0.00 3.60
1217 1471 1.134175 CTGTTCTGGCACCAAAAACGT 59.866 47.619 9.03 0.00 0.00 3.99
1218 1472 1.546476 TGTTCTGGCACCAAAAACGTT 59.454 42.857 0.00 0.00 0.00 3.99
1219 1473 2.753452 TGTTCTGGCACCAAAAACGTTA 59.247 40.909 0.00 0.00 0.00 3.18
1221 1475 3.907894 TCTGGCACCAAAAACGTTATC 57.092 42.857 0.00 0.00 0.00 1.75
1222 1476 2.554893 TCTGGCACCAAAAACGTTATCC 59.445 45.455 0.00 0.00 0.00 2.59
1224 1478 2.554893 TGGCACCAAAAACGTTATCCTC 59.445 45.455 0.00 0.00 0.00 3.71
1268 1555 6.478512 AACAAAACCAAAAAGGATGAGCTA 57.521 33.333 0.00 0.00 41.22 3.32
1287 1574 8.534954 TGAGCTAGTGTATGTAAACTTATCCT 57.465 34.615 0.00 0.00 0.00 3.24
1302 1589 5.842907 ACTTATCCTTTTGCTTTTCCACAC 58.157 37.500 0.00 0.00 0.00 3.82
1416 1756 8.598041 ACTGCAGTATCCCTAGATAATTTTAGG 58.402 37.037 20.16 0.00 36.73 2.69
1430 1770 9.243105 AGATAATTTTAGGCAAGCACTTTCTTA 57.757 29.630 0.00 0.00 0.00 2.10
1431 1771 9.508567 GATAATTTTAGGCAAGCACTTTCTTAG 57.491 33.333 0.00 0.00 0.00 2.18
1432 1772 6.901081 ATTTTAGGCAAGCACTTTCTTAGT 57.099 33.333 0.00 0.00 37.68 2.24
1433 1773 6.709018 TTTTAGGCAAGCACTTTCTTAGTT 57.291 33.333 0.00 0.00 33.85 2.24
1434 1774 6.709018 TTTAGGCAAGCACTTTCTTAGTTT 57.291 33.333 0.00 0.00 33.85 2.66
1435 1775 4.837896 AGGCAAGCACTTTCTTAGTTTC 57.162 40.909 0.00 0.00 33.85 2.78
1436 1776 3.570125 AGGCAAGCACTTTCTTAGTTTCC 59.430 43.478 0.00 0.00 33.85 3.13
1437 1777 3.570125 GGCAAGCACTTTCTTAGTTTCCT 59.430 43.478 0.00 0.00 33.85 3.36
1459 1799 5.180680 CCTTTTACCAAACCTAGCTGTGTAC 59.819 44.000 0.00 0.00 0.00 2.90
1462 1802 2.029290 ACCAAACCTAGCTGTGTACTCG 60.029 50.000 0.00 0.00 0.00 4.18
1492 1835 6.664428 ACCCTTTAAAATAACAGCACATGT 57.336 33.333 0.00 0.00 46.97 3.21
1577 1920 5.934402 AGATACATCTTTACCGTCTTGGT 57.066 39.130 0.00 0.00 44.40 3.67
1595 1938 3.581755 TGGTATAGAACAGCGTGAACAC 58.418 45.455 0.00 0.00 0.00 3.32
1618 1961 2.246469 TGCCCTCAAAAGCTTTGCATA 58.754 42.857 13.54 0.00 0.00 3.14
1626 1969 3.515330 AAAGCTTTGCATATGCTGGTC 57.485 42.857 27.13 14.19 42.66 4.02
1695 2038 6.822442 TGTATTACCTGAGAGTTCACACAAA 58.178 36.000 0.00 0.00 0.00 2.83
1762 2105 1.692411 AACAGTGGGAGAACTTTGCC 58.308 50.000 0.00 0.00 0.00 4.52
1793 2136 4.456911 GCCACATGGGATATGATGTTACTG 59.543 45.833 0.00 0.00 40.01 2.74
1798 2141 5.372343 TGGGATATGATGTTACTGCTTGT 57.628 39.130 0.00 0.00 0.00 3.16
1820 2163 4.023963 GTGAACTTAAGGTGCTTCTTGGAC 60.024 45.833 7.53 0.00 36.19 4.02
1848 2191 2.420129 CCCTCCCCTAATTCTTGTGTCG 60.420 54.545 0.00 0.00 0.00 4.35
1854 2197 6.131264 TCCCCTAATTCTTGTGTCGTAGATA 58.869 40.000 0.00 0.00 40.67 1.98
1865 2208 9.403110 TCTTGTGTCGTAGATAAAAGTAACTTC 57.597 33.333 0.00 0.00 42.57 3.01
1893 2236 0.387239 GCTTGTGCACGTTGGATTCC 60.387 55.000 13.13 0.00 39.41 3.01
1903 2254 2.171870 ACGTTGGATTCCGATACCCAAT 59.828 45.455 0.00 0.00 40.35 3.16
1932 2284 3.953612 ACACAAAGCCAGAGATGTGAAAA 59.046 39.130 11.30 0.00 44.52 2.29
1938 2290 7.284034 ACAAAGCCAGAGATGTGAAAATATAGG 59.716 37.037 0.00 0.00 0.00 2.57
1939 2291 5.312079 AGCCAGAGATGTGAAAATATAGGC 58.688 41.667 0.00 0.00 37.52 3.93
2004 2356 2.857186 TCAAACTGCAGAGTGGCATA 57.143 45.000 23.35 0.00 43.97 3.14
2031 2383 2.491693 ACCAAATATTCCTGCAACACCG 59.508 45.455 0.00 0.00 0.00 4.94
2036 2388 0.255890 ATTCCTGCAACACCGCCTAT 59.744 50.000 0.00 0.00 0.00 2.57
2041 2393 0.878416 TGCAACACCGCCTATCAAAC 59.122 50.000 0.00 0.00 0.00 2.93
2053 2405 4.393062 CGCCTATCAAACTGTTCACATTCT 59.607 41.667 0.00 0.00 0.00 2.40
2054 2406 5.634896 GCCTATCAAACTGTTCACATTCTG 58.365 41.667 0.00 0.00 0.00 3.02
2055 2407 5.634896 CCTATCAAACTGTTCACATTCTGC 58.365 41.667 0.00 0.00 0.00 4.26
2056 2408 3.607422 TCAAACTGTTCACATTCTGCG 57.393 42.857 0.00 0.00 0.00 5.18
2066 2426 1.265095 CACATTCTGCGACTGTTGCTT 59.735 47.619 20.03 1.26 0.00 3.91
2075 2435 2.935238 GCGACTGTTGCTTCCCTCATTA 60.935 50.000 12.78 0.00 0.00 1.90
2082 2442 4.041567 TGTTGCTTCCCTCATTAGAACAGA 59.958 41.667 0.00 0.00 0.00 3.41
2086 2446 4.081420 GCTTCCCTCATTAGAACAGACTGA 60.081 45.833 10.08 0.00 0.00 3.41
2095 2455 3.118905 AGAACAGACTGACTTTCCTGC 57.881 47.619 10.08 0.00 0.00 4.85
2096 2456 2.703007 AGAACAGACTGACTTTCCTGCT 59.297 45.455 10.08 0.00 0.00 4.24
2105 2465 1.471684 GACTTTCCTGCTCTGCCAATG 59.528 52.381 0.00 0.00 0.00 2.82
2172 2532 3.922171 AGCAGTGGGAAATAAGAGAGG 57.078 47.619 0.00 0.00 0.00 3.69
2178 2538 5.045578 CAGTGGGAAATAAGAGAGGAAGGAA 60.046 44.000 0.00 0.00 0.00 3.36
2179 2539 5.733647 AGTGGGAAATAAGAGAGGAAGGAAT 59.266 40.000 0.00 0.00 0.00 3.01
2190 2550 5.254972 AGAGAGGAAGGAATGGGAAAGATTT 59.745 40.000 0.00 0.00 0.00 2.17
2206 2566 8.568794 GGGAAAGATTTGATAAATACTAGTGGC 58.431 37.037 5.39 0.00 0.00 5.01
2229 2589 5.180117 GCTGCCACTTATAGTTATCCACATG 59.820 44.000 0.00 0.00 0.00 3.21
2248 2608 8.673711 TCCACATGTTAAAGCACATAACTATTC 58.326 33.333 0.00 0.00 35.51 1.75
2276 2636 6.485648 TCTTAGGTGGCAGAAGTTTAACTTTC 59.514 38.462 11.88 5.65 38.80 2.62
2284 2644 7.706179 TGGCAGAAGTTTAACTTTCAAGAAATG 59.294 33.333 11.88 3.31 38.80 2.32
2298 2658 7.615582 TTCAAGAAATGTTGCGATTCTAGAT 57.384 32.000 0.00 0.00 33.26 1.98
2305 2665 6.834959 ATGTTGCGATTCTAGATGTGTAAG 57.165 37.500 0.00 0.00 0.00 2.34
2319 2679 2.425312 TGTGTAAGCAACCAACCAACAG 59.575 45.455 0.00 0.00 0.00 3.16
2348 2709 1.070914 TGCCAGACATACCGTTGACAA 59.929 47.619 0.00 0.00 0.00 3.18
2426 2790 1.571955 TATGCCCTGAGCTTGACTGA 58.428 50.000 0.00 0.00 44.23 3.41
2523 2887 5.714806 TGGAATACATTTCCCCTCAAGAAAC 59.285 40.000 2.11 0.00 36.13 2.78
2546 2910 1.886542 GACAAGTTCGGCCATCCTTTT 59.113 47.619 2.24 0.00 0.00 2.27
2572 2936 3.573538 TGCTTGAAGCCAAATTCTGCTAA 59.426 39.130 15.43 0.00 41.51 3.09
2579 2943 6.153340 TGAAGCCAAATTCTGCTAAAAGCTAT 59.847 34.615 2.44 0.00 42.97 2.97
2600 2964 7.123247 AGCTATGAGGAATTACTTTTGTGCATT 59.877 33.333 0.00 0.00 0.00 3.56
2613 2977 2.156917 TGTGCATTGCAGAAGGAGAAG 58.843 47.619 12.53 0.00 40.08 2.85
2617 2981 4.034975 GTGCATTGCAGAAGGAGAAGATAC 59.965 45.833 12.53 0.00 40.08 2.24
2694 3058 3.740044 CGAATGTACGCACCTTCAAAT 57.260 42.857 4.92 0.00 30.99 2.32
2695 3059 3.416277 CGAATGTACGCACCTTCAAATG 58.584 45.455 4.92 0.00 30.99 2.32
2719 3083 1.230050 TAACCCCTCCCCAACCCTC 60.230 63.158 0.00 0.00 0.00 4.30
2740 3104 9.331466 ACCCTCTGTGAATGTGAATATAGATAT 57.669 33.333 0.00 0.00 0.00 1.63
2843 3207 5.454613 GGTCACATTTTCTTGGTCCCAAATT 60.455 40.000 0.00 0.00 35.33 1.82
2921 3285 6.360370 AGATTGCCTCTGAAGTAAACAGTA 57.640 37.500 0.00 0.00 36.81 2.74
2926 3290 4.799586 GCCTCTGAAGTAAACAGTACAGCA 60.800 45.833 0.00 0.00 36.81 4.41
3030 3394 8.134895 TGCTTAATGTTTTGAACTTACTCCAAG 58.865 33.333 0.00 0.00 40.38 3.61
3039 3403 2.830293 ACTTACTCCAAGTACTCCCCC 58.170 52.381 0.00 0.00 45.93 5.40
3040 3404 2.386113 ACTTACTCCAAGTACTCCCCCT 59.614 50.000 0.00 0.00 45.93 4.79
3041 3405 2.544844 TACTCCAAGTACTCCCCCTG 57.455 55.000 0.00 0.00 0.00 4.45
3042 3406 0.492276 ACTCCAAGTACTCCCCCTGT 59.508 55.000 0.00 0.00 0.00 4.00
3043 3407 1.196012 CTCCAAGTACTCCCCCTGTC 58.804 60.000 0.00 0.00 0.00 3.51
3044 3408 0.252558 TCCAAGTACTCCCCCTGTCC 60.253 60.000 0.00 0.00 0.00 4.02
3045 3409 0.252742 CCAAGTACTCCCCCTGTCCT 60.253 60.000 0.00 0.00 0.00 3.85
3046 3410 0.905357 CAAGTACTCCCCCTGTCCTG 59.095 60.000 0.00 0.00 0.00 3.86
3047 3411 0.790993 AAGTACTCCCCCTGTCCTGA 59.209 55.000 0.00 0.00 0.00 3.86
3048 3412 0.790993 AGTACTCCCCCTGTCCTGAA 59.209 55.000 0.00 0.00 0.00 3.02
3049 3413 1.366435 AGTACTCCCCCTGTCCTGAAT 59.634 52.381 0.00 0.00 0.00 2.57
3050 3414 2.197465 GTACTCCCCCTGTCCTGAATT 58.803 52.381 0.00 0.00 0.00 2.17
3051 3415 2.661176 ACTCCCCCTGTCCTGAATTA 57.339 50.000 0.00 0.00 0.00 1.40
3052 3416 2.197465 ACTCCCCCTGTCCTGAATTAC 58.803 52.381 0.00 0.00 0.00 1.89
3053 3417 2.225908 ACTCCCCCTGTCCTGAATTACT 60.226 50.000 0.00 0.00 0.00 2.24
3054 3418 2.846827 CTCCCCCTGTCCTGAATTACTT 59.153 50.000 0.00 0.00 0.00 2.24
3055 3419 2.576191 TCCCCCTGTCCTGAATTACTTG 59.424 50.000 0.00 0.00 0.00 3.16
3056 3420 2.308866 CCCCCTGTCCTGAATTACTTGT 59.691 50.000 0.00 0.00 0.00 3.16
3057 3421 3.610911 CCCCTGTCCTGAATTACTTGTC 58.389 50.000 0.00 0.00 0.00 3.18
3058 3422 3.262420 CCCTGTCCTGAATTACTTGTCG 58.738 50.000 0.00 0.00 0.00 4.35
3059 3423 3.306780 CCCTGTCCTGAATTACTTGTCGT 60.307 47.826 0.00 0.00 0.00 4.34
3060 3424 4.081862 CCCTGTCCTGAATTACTTGTCGTA 60.082 45.833 0.00 0.00 0.00 3.43
3061 3425 5.395324 CCCTGTCCTGAATTACTTGTCGTAT 60.395 44.000 0.00 0.00 0.00 3.06
3062 3426 6.183360 CCCTGTCCTGAATTACTTGTCGTATA 60.183 42.308 0.00 0.00 0.00 1.47
3063 3427 7.262772 CCTGTCCTGAATTACTTGTCGTATAA 58.737 38.462 0.00 0.00 0.00 0.98
3064 3428 7.762615 CCTGTCCTGAATTACTTGTCGTATAAA 59.237 37.037 0.00 0.00 0.00 1.40
3065 3429 9.314321 CTGTCCTGAATTACTTGTCGTATAAAT 57.686 33.333 0.00 0.00 0.00 1.40
3066 3430 9.093970 TGTCCTGAATTACTTGTCGTATAAATG 57.906 33.333 0.00 0.00 0.00 2.32
3067 3431 9.309516 GTCCTGAATTACTTGTCGTATAAATGA 57.690 33.333 0.00 0.00 0.00 2.57
3068 3432 9.878667 TCCTGAATTACTTGTCGTATAAATGAA 57.121 29.630 0.00 0.00 0.00 2.57
3077 3441 9.181805 ACTTGTCGTATAAATGAATGTATCGAG 57.818 33.333 0.00 0.00 0.00 4.04
3078 3442 9.394477 CTTGTCGTATAAATGAATGTATCGAGA 57.606 33.333 0.00 0.00 0.00 4.04
3079 3443 8.723777 TGTCGTATAAATGAATGTATCGAGAC 57.276 34.615 2.50 2.50 0.00 3.36
3080 3444 7.806487 TGTCGTATAAATGAATGTATCGAGACC 59.194 37.037 7.88 0.00 0.00 3.85
3081 3445 8.021973 GTCGTATAAATGAATGTATCGAGACCT 58.978 37.037 7.88 0.00 0.00 3.85
3082 3446 9.223099 TCGTATAAATGAATGTATCGAGACCTA 57.777 33.333 7.88 0.00 0.00 3.08
3094 3458 9.751542 ATGTATCGAGACCTATTTTTAGTTCTG 57.248 33.333 7.88 0.00 0.00 3.02
3095 3459 7.705325 TGTATCGAGACCTATTTTTAGTTCTGC 59.295 37.037 7.88 0.00 0.00 4.26
3096 3460 6.032956 TCGAGACCTATTTTTAGTTCTGCA 57.967 37.500 0.00 0.00 0.00 4.41
3097 3461 6.640518 TCGAGACCTATTTTTAGTTCTGCAT 58.359 36.000 0.00 0.00 0.00 3.96
3098 3462 7.778083 TCGAGACCTATTTTTAGTTCTGCATA 58.222 34.615 0.00 0.00 0.00 3.14
3099 3463 7.705325 TCGAGACCTATTTTTAGTTCTGCATAC 59.295 37.037 0.00 0.00 0.00 2.39
3100 3464 7.491372 CGAGACCTATTTTTAGTTCTGCATACA 59.509 37.037 0.00 0.00 0.00 2.29
3101 3465 9.331282 GAGACCTATTTTTAGTTCTGCATACAT 57.669 33.333 0.00 0.00 0.00 2.29
3102 3466 9.331282 AGACCTATTTTTAGTTCTGCATACATC 57.669 33.333 0.00 0.00 0.00 3.06
3103 3467 8.451908 ACCTATTTTTAGTTCTGCATACATCC 57.548 34.615 0.00 0.00 0.00 3.51
3104 3468 8.052748 ACCTATTTTTAGTTCTGCATACATCCA 58.947 33.333 0.00 0.00 0.00 3.41
3105 3469 9.071276 CCTATTTTTAGTTCTGCATACATCCAT 57.929 33.333 0.00 0.00 0.00 3.41
3108 3472 9.807649 ATTTTTAGTTCTGCATACATCCATTTC 57.192 29.630 0.00 0.00 0.00 2.17
3109 3473 8.579850 TTTTAGTTCTGCATACATCCATTTCT 57.420 30.769 0.00 0.00 0.00 2.52
3110 3474 9.679661 TTTTAGTTCTGCATACATCCATTTCTA 57.320 29.630 0.00 0.00 0.00 2.10
3111 3475 9.851686 TTTAGTTCTGCATACATCCATTTCTAT 57.148 29.630 0.00 0.00 0.00 1.98
3112 3476 7.976135 AGTTCTGCATACATCCATTTCTATC 57.024 36.000 0.00 0.00 0.00 2.08
3113 3477 6.939163 AGTTCTGCATACATCCATTTCTATCC 59.061 38.462 0.00 0.00 0.00 2.59
3114 3478 6.438186 TCTGCATACATCCATTTCTATCCA 57.562 37.500 0.00 0.00 0.00 3.41
3115 3479 7.024345 TCTGCATACATCCATTTCTATCCAT 57.976 36.000 0.00 0.00 0.00 3.41
3116 3480 7.464273 TCTGCATACATCCATTTCTATCCATT 58.536 34.615 0.00 0.00 0.00 3.16
3117 3481 7.946219 TCTGCATACATCCATTTCTATCCATTT 59.054 33.333 0.00 0.00 0.00 2.32
3118 3482 8.481492 TGCATACATCCATTTCTATCCATTTT 57.519 30.769 0.00 0.00 0.00 1.82
3119 3483 8.926374 TGCATACATCCATTTCTATCCATTTTT 58.074 29.630 0.00 0.00 0.00 1.94
3120 3484 9.199982 GCATACATCCATTTCTATCCATTTTTG 57.800 33.333 0.00 0.00 0.00 2.44
3123 3487 8.365060 ACATCCATTTCTATCCATTTTTGTGA 57.635 30.769 0.00 0.00 0.00 3.58
3124 3488 8.253113 ACATCCATTTCTATCCATTTTTGTGAC 58.747 33.333 0.00 0.00 0.00 3.67
3125 3489 7.773489 TCCATTTCTATCCATTTTTGTGACA 57.227 32.000 0.00 0.00 0.00 3.58
3126 3490 8.187913 TCCATTTCTATCCATTTTTGTGACAA 57.812 30.769 0.00 0.00 0.00 3.18
3127 3491 8.646004 TCCATTTCTATCCATTTTTGTGACAAA 58.354 29.630 6.66 6.66 0.00 2.83
3128 3492 8.928733 CCATTTCTATCCATTTTTGTGACAAAG 58.071 33.333 10.91 0.00 0.00 2.77
3129 3493 9.480053 CATTTCTATCCATTTTTGTGACAAAGT 57.520 29.630 10.91 1.80 0.00 2.66
3136 3500 8.430801 TCCATTTTTGTGACAAAGTAATTTGG 57.569 30.769 18.88 9.16 36.30 3.28
3137 3501 7.497249 TCCATTTTTGTGACAAAGTAATTTGGG 59.503 33.333 18.88 7.24 36.30 4.12
3138 3502 7.497249 CCATTTTTGTGACAAAGTAATTTGGGA 59.503 33.333 18.88 3.05 36.30 4.37
3139 3503 9.054922 CATTTTTGTGACAAAGTAATTTGGGAT 57.945 29.630 18.88 0.00 36.30 3.85
3140 3504 8.430801 TTTTTGTGACAAAGTAATTTGGGATG 57.569 30.769 18.88 0.00 36.30 3.51
3141 3505 5.720371 TGTGACAAAGTAATTTGGGATGG 57.280 39.130 18.88 0.00 36.30 3.51
3142 3506 5.389520 TGTGACAAAGTAATTTGGGATGGA 58.610 37.500 18.88 0.00 36.30 3.41
3143 3507 5.476599 TGTGACAAAGTAATTTGGGATGGAG 59.523 40.000 18.88 0.00 36.30 3.86
3144 3508 5.016173 TGACAAAGTAATTTGGGATGGAGG 58.984 41.667 18.88 0.00 36.30 4.30
3145 3509 4.352893 ACAAAGTAATTTGGGATGGAGGG 58.647 43.478 18.88 0.00 36.30 4.30
3155 3519 4.228237 TGGGATGGAGGGAGTACATTAT 57.772 45.455 0.00 0.00 0.00 1.28
3170 3534 7.119846 GGAGTACATTATTATTCACCTGCCATC 59.880 40.741 0.00 0.00 0.00 3.51
3175 3539 2.336945 TATTCACCTGCCATCTGCTG 57.663 50.000 0.00 0.00 42.00 4.41
3208 3572 8.656806 CCTGTCTAACCAATATAATGGGAGTAA 58.343 37.037 11.57 1.62 45.18 2.24
3231 3595 2.620251 TTGAGTTGTCTGGTGGTCTG 57.380 50.000 0.00 0.00 0.00 3.51
3253 3630 6.318900 TCTGATCTTCACTAAGCATTCGACTA 59.681 38.462 0.00 0.00 32.36 2.59
3254 3631 7.013750 TCTGATCTTCACTAAGCATTCGACTAT 59.986 37.037 0.00 0.00 32.36 2.12
3255 3632 8.166422 TGATCTTCACTAAGCATTCGACTATA 57.834 34.615 0.00 0.00 32.36 1.31
3256 3633 8.293157 TGATCTTCACTAAGCATTCGACTATAG 58.707 37.037 0.00 0.00 32.36 1.31
3257 3634 6.971602 TCTTCACTAAGCATTCGACTATAGG 58.028 40.000 4.43 0.00 32.36 2.57
3258 3635 5.122512 TCACTAAGCATTCGACTATAGGC 57.877 43.478 4.43 0.00 0.00 3.93
3259 3636 4.583073 TCACTAAGCATTCGACTATAGGCA 59.417 41.667 6.37 0.00 0.00 4.75
3260 3637 5.243954 TCACTAAGCATTCGACTATAGGCAT 59.756 40.000 6.37 0.00 0.00 4.40
3261 3638 5.347093 CACTAAGCATTCGACTATAGGCATG 59.653 44.000 6.37 3.98 0.00 4.06
3262 3639 2.693069 AGCATTCGACTATAGGCATGC 58.307 47.619 18.83 18.83 37.82 4.06
3263 3640 2.037641 AGCATTCGACTATAGGCATGCA 59.962 45.455 25.10 0.00 39.62 3.96
3264 3641 2.158449 GCATTCGACTATAGGCATGCAC 59.842 50.000 20.69 9.10 37.54 4.57
3265 3642 3.657634 CATTCGACTATAGGCATGCACT 58.342 45.455 21.36 16.19 0.00 4.40
3290 3667 1.202177 GCTGTAATGCATTGTCACCGG 60.202 52.381 22.27 0.00 0.00 5.28
3291 3668 0.808125 TGTAATGCATTGTCACCGGC 59.192 50.000 22.27 2.88 0.00 6.13
3316 3696 8.601476 GCTTACAGCATACTTCGTACTTTAATT 58.399 33.333 0.00 0.00 41.89 1.40
3317 3697 9.901724 CTTACAGCATACTTCGTACTTTAATTG 57.098 33.333 0.00 0.00 0.00 2.32
3318 3698 6.772078 ACAGCATACTTCGTACTTTAATTGC 58.228 36.000 0.00 0.00 0.00 3.56
3319 3699 6.594159 ACAGCATACTTCGTACTTTAATTGCT 59.406 34.615 0.00 0.00 37.19 3.91
3320 3700 7.119262 ACAGCATACTTCGTACTTTAATTGCTT 59.881 33.333 4.95 0.00 34.72 3.91
3321 3701 7.636359 CAGCATACTTCGTACTTTAATTGCTTC 59.364 37.037 4.95 0.00 34.72 3.86
3322 3702 7.549488 AGCATACTTCGTACTTTAATTGCTTCT 59.451 33.333 0.00 0.00 33.23 2.85
3323 3703 8.814235 GCATACTTCGTACTTTAATTGCTTCTA 58.186 33.333 0.00 0.00 0.00 2.10
3326 3706 8.026341 ACTTCGTACTTTAATTGCTTCTAACC 57.974 34.615 0.00 0.00 0.00 2.85
3327 3707 7.876582 ACTTCGTACTTTAATTGCTTCTAACCT 59.123 33.333 0.00 0.00 0.00 3.50
3328 3708 8.611654 TTCGTACTTTAATTGCTTCTAACCTT 57.388 30.769 0.00 0.00 0.00 3.50
3329 3709 8.611654 TCGTACTTTAATTGCTTCTAACCTTT 57.388 30.769 0.00 0.00 0.00 3.11
3330 3710 9.059260 TCGTACTTTAATTGCTTCTAACCTTTT 57.941 29.630 0.00 0.00 0.00 2.27
3378 3758 8.899887 AAGATTTTAAAGGGAAGATTGATCCA 57.100 30.769 0.00 0.00 38.80 3.41
3391 3777 9.657419 GGAAGATTGATCCATGTTTTATTGTTT 57.343 29.630 0.00 0.00 36.92 2.83
3477 3864 4.098914 AGAATTACCAGTTTGCAGTGGA 57.901 40.909 16.44 0.00 45.69 4.02
3537 3924 3.502123 TTACAGGCCTGTTACTTTGCT 57.498 42.857 41.69 17.47 41.83 3.91
3559 3946 4.559862 AATCCTTTACCAGTGGAGTCTG 57.440 45.455 18.40 1.12 32.95 3.51
3651 4038 4.261197 CCTCTAAAAGCACTTGTGTTCACC 60.261 45.833 2.61 0.00 0.00 4.02
3684 4071 4.928661 AAATGCACTTGTCGATGTAGTC 57.071 40.909 0.00 0.00 0.00 2.59
3696 4083 3.193479 TCGATGTAGTCAGTGAAGCATGT 59.807 43.478 9.24 0.00 0.00 3.21
3699 4086 5.576774 CGATGTAGTCAGTGAAGCATGTTTA 59.423 40.000 9.24 0.00 0.00 2.01
3714 4101 4.925054 GCATGTTTAGCTTTGCATGAGAAA 59.075 37.500 20.75 0.00 40.61 2.52
3747 4134 4.400251 CACAGCCTAATGATGTCCAACAAT 59.600 41.667 0.00 0.00 0.00 2.71
3783 4170 3.660669 TCTTATTCCCCCAGGTGAAACTT 59.339 43.478 0.00 0.00 36.74 2.66
3803 4191 8.574251 AAACTTGCTATACATTGTGTTCCATA 57.426 30.769 0.00 0.00 0.00 2.74
3835 4224 9.844257 AAAAATGTTTTATCACCAAGGAATTGA 57.156 25.926 0.00 0.00 0.00 2.57
3840 4229 7.341769 TGTTTTATCACCAAGGAATTGATAGGG 59.658 37.037 0.00 0.00 34.51 3.53
3849 4238 7.069344 CCAAGGAATTGATAGGGGTTAATCTT 58.931 38.462 0.00 0.00 0.00 2.40
3891 4280 1.279496 AATCTGGTCACTGGCTGCTA 58.721 50.000 0.00 0.00 0.00 3.49
3913 4302 3.557903 TTCTGCCTGGGAGTGCTGC 62.558 63.158 15.24 0.00 0.00 5.25
3931 4320 3.119990 GCTGCGGCTACTTTGTTTATCAA 60.120 43.478 11.21 0.00 35.22 2.57
4009 7634 3.399330 GTTCTCGTTCCAAGATGGTGAA 58.601 45.455 0.00 0.00 39.03 3.18
4036 7661 2.703007 AGACCTGAAGAAACTCTGCTGT 59.297 45.455 0.00 0.00 0.00 4.40
4050 7675 2.961062 TCTGCTGTGCTATAGCTGATGA 59.039 45.455 24.61 12.44 41.97 2.92
4054 7679 3.860378 GCTGTGCTATAGCTGATGACCTC 60.860 52.174 24.61 5.82 42.66 3.85
4070 7695 0.527817 CCTCGTTACCTAAGCCTGCG 60.528 60.000 0.00 0.00 0.00 5.18
4071 7696 0.527817 CTCGTTACCTAAGCCTGCGG 60.528 60.000 0.00 0.00 0.00 5.69
4090 7715 2.542205 CGGCATATGCAACCATCAACAG 60.542 50.000 28.07 2.08 44.36 3.16
4092 7717 3.119029 GGCATATGCAACCATCAACAGTT 60.119 43.478 28.07 0.00 44.36 3.16
4097 7722 2.495270 TGCAACCATCAACAGTTTGTGT 59.505 40.909 0.00 0.00 43.24 3.72
4254 7879 5.946298 TGATGAATAAAGCTTGCTGTTCTG 58.054 37.500 0.00 0.00 0.00 3.02
4329 7955 7.444183 AGCTACTACATTTGCAGTTTACAGAAA 59.556 33.333 0.00 0.00 0.00 2.52
4357 7983 2.745821 TGCAGCATTTCTGTGAGACATC 59.254 45.455 0.00 0.00 44.66 3.06
4370 7996 6.151144 TCTGTGAGACATCGAATTACTTCAGA 59.849 38.462 0.00 0.00 0.00 3.27
4371 7997 6.687604 TGTGAGACATCGAATTACTTCAGAA 58.312 36.000 0.00 0.00 0.00 3.02
4372 7998 6.586463 TGTGAGACATCGAATTACTTCAGAAC 59.414 38.462 0.00 0.00 0.00 3.01
4373 7999 6.809196 GTGAGACATCGAATTACTTCAGAACT 59.191 38.462 0.00 0.00 0.00 3.01
4374 8000 6.808704 TGAGACATCGAATTACTTCAGAACTG 59.191 38.462 0.00 0.00 0.00 3.16
4415 8041 4.037208 AGCAGATGACTTGGTTTGTTTCAG 59.963 41.667 0.00 0.00 0.00 3.02
4418 8044 4.956075 AGATGACTTGGTTTGTTTCAGGTT 59.044 37.500 0.00 0.00 0.00 3.50
4483 8109 5.652994 TGCAGAAACAGTTTTTACTTGGT 57.347 34.783 0.00 0.00 0.00 3.67
4553 8179 9.620259 AAAGATTGTATGTAGAGAAGGAAATCC 57.380 33.333 0.00 0.00 0.00 3.01
4579 8205 4.875536 TGCAGTTATAAGTTGTGCATCGAT 59.124 37.500 0.00 0.00 39.17 3.59
4581 8207 5.006649 GCAGTTATAAGTTGTGCATCGATGA 59.993 40.000 29.20 11.22 34.18 2.92
4612 8238 5.934625 GGATCTTATTACTCATTGCATCGGT 59.065 40.000 0.00 0.00 0.00 4.69
4622 8248 1.643868 TTGCATCGGTCGCAACATCC 61.644 55.000 2.05 0.00 44.13 3.51
4642 8268 2.640184 CTGAGGCAGCATCAGATTCAA 58.360 47.619 29.38 0.00 45.80 2.69
4648 8274 1.404391 CAGCATCAGATTCAACAGGGC 59.596 52.381 0.00 0.00 0.00 5.19
4714 8344 5.789643 ACAGAAAATTGTGTATGGTTGCT 57.210 34.783 0.00 0.00 32.39 3.91
4763 8393 2.209273 GTTGCAGCCGGTTTTCATTTT 58.791 42.857 1.90 0.00 0.00 1.82
4764 8394 1.863267 TGCAGCCGGTTTTCATTTTG 58.137 45.000 1.90 0.00 0.00 2.44
4785 8415 1.142870 TGGCAGTTTGGACAGTAAGCT 59.857 47.619 0.00 0.00 0.00 3.74
4793 8423 6.146347 CAGTTTGGACAGTAAGCTAGTTTCTC 59.854 42.308 0.00 0.00 0.00 2.87
4801 8431 2.440539 AGCTAGTTTCTCGTGTGTGG 57.559 50.000 0.00 0.00 0.00 4.17
4803 8433 1.872237 GCTAGTTTCTCGTGTGTGGCA 60.872 52.381 0.00 0.00 0.00 4.92
4806 8436 1.014352 GTTTCTCGTGTGTGGCAGTT 58.986 50.000 0.00 0.00 0.00 3.16
4807 8437 1.400494 GTTTCTCGTGTGTGGCAGTTT 59.600 47.619 0.00 0.00 0.00 2.66
4809 8439 1.013596 TCTCGTGTGTGGCAGTTTTG 58.986 50.000 0.00 0.00 0.00 2.44
4810 8440 0.029300 CTCGTGTGTGGCAGTTTTGG 59.971 55.000 0.00 0.00 0.00 3.28
4811 8441 0.393132 TCGTGTGTGGCAGTTTTGGA 60.393 50.000 0.00 0.00 0.00 3.53
4863 8501 4.378253 CCATGGCAGTTTTTAAAAATGCCG 60.378 41.667 38.19 29.71 45.27 5.69
4864 8502 4.060038 TGGCAGTTTTTAAAAATGCCGA 57.940 36.364 38.19 29.34 45.27 5.54
4866 8504 3.185594 GGCAGTTTTTAAAAATGCCGACC 59.814 43.478 34.78 19.09 39.88 4.79
4870 8508 2.011122 TTTAAAAATGCCGACCCCCA 57.989 45.000 0.00 0.00 0.00 4.96
4874 8512 2.075355 AAAATGCCGACCCCCACTGA 62.075 55.000 0.00 0.00 0.00 3.41
4875 8513 2.075355 AAATGCCGACCCCCACTGAA 62.075 55.000 0.00 0.00 0.00 3.02
4877 8515 3.319198 GCCGACCCCCACTGAAGA 61.319 66.667 0.00 0.00 0.00 2.87
4878 8516 2.890766 GCCGACCCCCACTGAAGAA 61.891 63.158 0.00 0.00 0.00 2.52
4879 8517 1.758592 CCGACCCCCACTGAAGAAA 59.241 57.895 0.00 0.00 0.00 2.52
4880 8518 0.605589 CCGACCCCCACTGAAGAAAC 60.606 60.000 0.00 0.00 0.00 2.78
4882 8520 1.878102 CGACCCCCACTGAAGAAACTG 60.878 57.143 0.00 0.00 0.00 3.16
4883 8521 0.178990 ACCCCCACTGAAGAAACTGC 60.179 55.000 0.00 0.00 0.00 4.40
4885 8523 0.178992 CCCCACTGAAGAAACTGCCA 60.179 55.000 0.00 0.00 0.00 4.92
4886 8524 1.242076 CCCACTGAAGAAACTGCCAG 58.758 55.000 0.00 0.00 0.00 4.85
4887 8525 0.595095 CCACTGAAGAAACTGCCAGC 59.405 55.000 0.00 0.00 0.00 4.85
4888 8526 0.595095 CACTGAAGAAACTGCCAGCC 59.405 55.000 0.00 0.00 0.00 4.85
4890 8528 2.192608 CTGAAGAAACTGCCAGCCGC 62.193 60.000 0.00 0.00 38.31 6.53
4891 8529 3.314388 GAAGAAACTGCCAGCCGCG 62.314 63.158 0.00 0.00 42.08 6.46
4907 8545 2.781957 CGCCGTTCGCAATTGCTA 59.218 55.556 26.86 14.86 39.32 3.49
4908 8546 1.351707 CGCCGTTCGCAATTGCTAT 59.648 52.632 26.86 0.00 39.32 2.97
4909 8547 0.654472 CGCCGTTCGCAATTGCTATC 60.654 55.000 26.86 14.73 39.32 2.08
4910 8548 0.317020 GCCGTTCGCAATTGCTATCC 60.317 55.000 26.86 11.61 39.32 2.59
4911 8549 1.299541 CCGTTCGCAATTGCTATCCT 58.700 50.000 26.86 0.00 39.32 3.24
4912 8550 1.003545 CCGTTCGCAATTGCTATCCTG 60.004 52.381 26.86 11.26 39.32 3.86
4913 8551 1.933181 CGTTCGCAATTGCTATCCTGA 59.067 47.619 26.86 13.41 39.32 3.86
4914 8552 2.285834 CGTTCGCAATTGCTATCCTGAC 60.286 50.000 26.86 10.66 39.32 3.51
4915 8553 2.939103 GTTCGCAATTGCTATCCTGACT 59.061 45.455 26.86 0.00 39.32 3.41
4916 8554 4.119862 GTTCGCAATTGCTATCCTGACTA 58.880 43.478 26.86 0.48 39.32 2.59
4917 8555 4.607293 TCGCAATTGCTATCCTGACTAT 57.393 40.909 26.86 0.00 39.32 2.12
4918 8556 4.960938 TCGCAATTGCTATCCTGACTATT 58.039 39.130 26.86 0.00 39.32 1.73
4919 8557 4.751600 TCGCAATTGCTATCCTGACTATTG 59.248 41.667 26.86 7.29 39.32 1.90
4920 8558 4.083643 CGCAATTGCTATCCTGACTATTGG 60.084 45.833 26.86 2.84 39.32 3.16
4921 8559 4.320788 GCAATTGCTATCCTGACTATTGGC 60.321 45.833 23.21 0.00 38.21 4.52
4922 8560 4.989875 ATTGCTATCCTGACTATTGGCT 57.010 40.909 0.00 0.00 0.00 4.75
4923 8561 4.778213 TTGCTATCCTGACTATTGGCTT 57.222 40.909 0.00 0.00 0.00 4.35
4924 8562 4.342862 TGCTATCCTGACTATTGGCTTC 57.657 45.455 0.00 0.00 0.00 3.86
4925 8563 3.071602 TGCTATCCTGACTATTGGCTTCC 59.928 47.826 0.00 0.00 0.00 3.46
4926 8564 3.326297 GCTATCCTGACTATTGGCTTCCT 59.674 47.826 0.00 0.00 0.00 3.36
4927 8565 4.202409 GCTATCCTGACTATTGGCTTCCTT 60.202 45.833 0.00 0.00 0.00 3.36
4928 8566 4.870021 ATCCTGACTATTGGCTTCCTTT 57.130 40.909 0.00 0.00 0.00 3.11
4929 8567 4.222124 TCCTGACTATTGGCTTCCTTTC 57.778 45.455 0.00 0.00 0.00 2.62
4930 8568 3.846588 TCCTGACTATTGGCTTCCTTTCT 59.153 43.478 0.00 0.00 0.00 2.52
4931 8569 4.289672 TCCTGACTATTGGCTTCCTTTCTT 59.710 41.667 0.00 0.00 0.00 2.52
4932 8570 5.012893 CCTGACTATTGGCTTCCTTTCTTT 58.987 41.667 0.00 0.00 0.00 2.52
4933 8571 6.012858 TCCTGACTATTGGCTTCCTTTCTTTA 60.013 38.462 0.00 0.00 0.00 1.85
4934 8572 6.659242 CCTGACTATTGGCTTCCTTTCTTTAA 59.341 38.462 0.00 0.00 0.00 1.52
4935 8573 7.340487 CCTGACTATTGGCTTCCTTTCTTTAAT 59.660 37.037 0.00 0.00 0.00 1.40
4936 8574 8.055279 TGACTATTGGCTTCCTTTCTTTAATG 57.945 34.615 0.00 0.00 0.00 1.90
4937 8575 7.122650 TGACTATTGGCTTCCTTTCTTTAATGG 59.877 37.037 0.00 0.00 0.00 3.16
4938 8576 4.535526 TTGGCTTCCTTTCTTTAATGGC 57.464 40.909 0.00 0.00 31.44 4.40
4939 8577 3.778265 TGGCTTCCTTTCTTTAATGGCT 58.222 40.909 0.00 0.00 31.44 4.75
4940 8578 4.159557 TGGCTTCCTTTCTTTAATGGCTT 58.840 39.130 0.00 0.00 31.44 4.35
4941 8579 4.592778 TGGCTTCCTTTCTTTAATGGCTTT 59.407 37.500 0.00 0.00 31.44 3.51
4942 8580 5.777732 TGGCTTCCTTTCTTTAATGGCTTTA 59.222 36.000 0.00 0.00 31.44 1.85
4958 8596 7.848223 ATGGCTTTATTAAAAGTCCAATTGC 57.152 32.000 13.89 0.00 45.03 3.56
4959 8597 6.763355 TGGCTTTATTAAAAGTCCAATTGCA 58.237 32.000 0.00 0.00 45.03 4.08
4971 8609 4.040706 AGTCCAATTGCATCCAAACACAAT 59.959 37.500 0.00 0.00 34.05 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.695666 CACCCTCTATTCCGTCACAGAT 59.304 50.000 0.00 0.00 0.00 2.90
9 10 2.100197 CACCCTCTATTCCGTCACAGA 58.900 52.381 0.00 0.00 0.00 3.41
10 11 1.137086 CCACCCTCTATTCCGTCACAG 59.863 57.143 0.00 0.00 0.00 3.66
39 40 1.017387 GGCGGAAGAATGCGAGAATT 58.983 50.000 0.00 0.00 43.91 2.17
69 70 4.811557 CAGGACCAATTTCGAGAATCCTAC 59.188 45.833 5.04 0.00 33.29 3.18
71 72 3.264450 ACAGGACCAATTTCGAGAATCCT 59.736 43.478 0.00 0.47 35.45 3.24
74 75 4.651778 TGAACAGGACCAATTTCGAGAAT 58.348 39.130 0.00 0.00 0.00 2.40
87 88 2.397549 GTGCATTTGCTTGAACAGGAC 58.602 47.619 3.94 0.00 42.66 3.85
110 111 3.966543 CACCCACACCCACCCCTC 61.967 72.222 0.00 0.00 0.00 4.30
111 112 4.855230 ACACCCACACCCACCCCT 62.855 66.667 0.00 0.00 0.00 4.79
112 113 4.596585 CACACCCACACCCACCCC 62.597 72.222 0.00 0.00 0.00 4.95
113 114 4.596585 CCACACCCACACCCACCC 62.597 72.222 0.00 0.00 0.00 4.61
114 115 4.596585 CCCACACCCACACCCACC 62.597 72.222 0.00 0.00 0.00 4.61
115 116 4.596585 CCCCACACCCACACCCAC 62.597 72.222 0.00 0.00 0.00 4.61
135 136 5.121768 AGGCGTACACAAGATAAATGAACAC 59.878 40.000 0.00 0.00 0.00 3.32
141 142 5.221461 CCCTAGAGGCGTACACAAGATAAAT 60.221 44.000 0.00 0.00 0.00 1.40
144 145 3.220110 CCCTAGAGGCGTACACAAGATA 58.780 50.000 0.00 0.00 0.00 1.98
146 386 1.272313 ACCCTAGAGGCGTACACAAGA 60.272 52.381 0.00 0.00 40.58 3.02
147 387 1.135083 CACCCTAGAGGCGTACACAAG 60.135 57.143 0.00 0.00 40.58 3.16
149 389 0.251474 ACACCCTAGAGGCGTACACA 60.251 55.000 0.00 0.00 40.58 3.72
150 390 0.172803 CACACCCTAGAGGCGTACAC 59.827 60.000 0.00 0.00 40.58 2.90
151 391 0.968901 CCACACCCTAGAGGCGTACA 60.969 60.000 0.00 0.00 40.58 2.90
152 392 0.682209 TCCACACCCTAGAGGCGTAC 60.682 60.000 0.00 0.00 40.58 3.67
154 394 1.682684 CTCCACACCCTAGAGGCGT 60.683 63.158 0.00 0.00 40.58 5.68
155 395 3.082579 GCTCCACACCCTAGAGGCG 62.083 68.421 0.00 0.00 40.58 5.52
156 396 1.553690 TTGCTCCACACCCTAGAGGC 61.554 60.000 0.00 0.00 40.58 4.70
157 397 1.139853 GATTGCTCCACACCCTAGAGG 59.860 57.143 0.00 0.00 43.78 3.69
158 398 2.114616 AGATTGCTCCACACCCTAGAG 58.885 52.381 0.00 0.00 0.00 2.43
159 399 1.833630 CAGATTGCTCCACACCCTAGA 59.166 52.381 0.00 0.00 0.00 2.43
160 400 1.134280 CCAGATTGCTCCACACCCTAG 60.134 57.143 0.00 0.00 0.00 3.02
161 401 0.911769 CCAGATTGCTCCACACCCTA 59.088 55.000 0.00 0.00 0.00 3.53
162 402 1.136329 ACCAGATTGCTCCACACCCT 61.136 55.000 0.00 0.00 0.00 4.34
163 403 0.618458 TACCAGATTGCTCCACACCC 59.382 55.000 0.00 0.00 0.00 4.61
164 404 1.279271 AGTACCAGATTGCTCCACACC 59.721 52.381 0.00 0.00 0.00 4.16
180 420 5.246145 ACCTAGAAACTGCGTCATAGTAC 57.754 43.478 0.00 0.00 0.00 2.73
181 421 6.825213 TCTTACCTAGAAACTGCGTCATAGTA 59.175 38.462 0.00 0.00 0.00 1.82
182 422 5.651139 TCTTACCTAGAAACTGCGTCATAGT 59.349 40.000 0.00 0.00 0.00 2.12
189 429 5.174035 CGAATCATCTTACCTAGAAACTGCG 59.826 44.000 0.00 0.00 36.22 5.18
203 443 4.137543 GGGCCTTCAATACGAATCATCTT 58.862 43.478 0.84 0.00 31.69 2.40
214 454 4.148838 CAAATAATCGGGGGCCTTCAATA 58.851 43.478 0.84 0.00 0.00 1.90
215 455 2.965147 CAAATAATCGGGGGCCTTCAAT 59.035 45.455 0.84 0.00 0.00 2.57
254 495 2.108514 CGGCGGCATGACATTCAGT 61.109 57.895 10.53 0.00 0.00 3.41
270 513 6.093082 ACGAAAACATCCTAATTTCCTAACGG 59.907 38.462 0.00 0.00 31.03 4.44
275 518 5.336451 GCCAACGAAAACATCCTAATTTCCT 60.336 40.000 0.00 0.00 31.03 3.36
301 544 1.202651 CCCGTGTCCCCATATCTTCAC 60.203 57.143 0.00 0.00 0.00 3.18
302 545 1.128200 CCCGTGTCCCCATATCTTCA 58.872 55.000 0.00 0.00 0.00 3.02
303 546 0.250338 GCCCGTGTCCCCATATCTTC 60.250 60.000 0.00 0.00 0.00 2.87
304 547 1.837090 GCCCGTGTCCCCATATCTT 59.163 57.895 0.00 0.00 0.00 2.40
305 548 2.507854 CGCCCGTGTCCCCATATCT 61.508 63.158 0.00 0.00 0.00 1.98
306 549 2.030562 CGCCCGTGTCCCCATATC 59.969 66.667 0.00 0.00 0.00 1.63
307 550 3.556306 CCGCCCGTGTCCCCATAT 61.556 66.667 0.00 0.00 0.00 1.78
349 598 7.138692 AGACAATGCATTTCTTCTCAAGTAC 57.861 36.000 9.83 0.00 0.00 2.73
365 614 1.399791 GGTGAGCAAGCTAGACAATGC 59.600 52.381 0.00 0.00 39.06 3.56
414 663 7.968405 GGAGTAATATTCAATCAAACACCACAC 59.032 37.037 0.00 0.00 0.00 3.82
504 756 2.548057 TGAATCAGTTGACGCTCAAACC 59.452 45.455 2.65 0.00 38.22 3.27
513 765 2.611518 CTCCGTCCTGAATCAGTTGAC 58.388 52.381 9.63 9.19 0.00 3.18
520 772 1.550976 ACACTTCCTCCGTCCTGAATC 59.449 52.381 0.00 0.00 0.00 2.52
539 791 2.919229 GCAAGCATTCATACAAGCACAC 59.081 45.455 0.00 0.00 0.00 3.82
571 823 6.665992 AACCCAGGTCCTAAAAAGAAAATC 57.334 37.500 0.00 0.00 0.00 2.17
578 830 5.391577 AACAGTAACCCAGGTCCTAAAAA 57.608 39.130 0.00 0.00 0.00 1.94
604 856 0.035317 TGAGCAAAGTGTCAGCCGAT 59.965 50.000 0.00 0.00 0.00 4.18
620 872 3.340928 TGCAGGACAATCTGAACATGAG 58.659 45.455 0.00 0.00 36.93 2.90
675 927 1.686587 GCTCTTCTTCTAGGAGCTCCC 59.313 57.143 29.54 11.59 46.04 4.30
769 1021 2.914695 TAGTGTAACACGGGTTGCTT 57.085 45.000 19.53 10.29 41.43 3.91
772 1024 3.744426 CCTTCTTAGTGTAACACGGGTTG 59.256 47.826 14.74 0.00 41.43 3.77
787 1039 4.263331 GGACACATTGTCTTCCCCTTCTTA 60.263 45.833 6.29 0.00 46.19 2.10
796 1048 2.350522 AGCGATGGACACATTGTCTTC 58.649 47.619 6.29 3.74 46.19 2.87
800 1052 1.812571 GGAAAGCGATGGACACATTGT 59.187 47.619 0.00 0.00 40.10 2.71
925 1177 2.072298 GCCTACTTCAGACTTGTGCAG 58.928 52.381 0.00 0.00 0.00 4.41
926 1178 1.270839 GGCCTACTTCAGACTTGTGCA 60.271 52.381 0.00 0.00 0.00 4.57
927 1179 1.002544 AGGCCTACTTCAGACTTGTGC 59.997 52.381 1.29 0.00 0.00 4.57
933 1185 3.611766 TGCTAAAGGCCTACTTCAGAC 57.388 47.619 5.16 0.00 38.85 3.51
985 1237 7.499232 GGCTGACACCATACTTACAATTCTTAT 59.501 37.037 0.00 0.00 0.00 1.73
991 1243 4.261801 GTGGCTGACACCATACTTACAAT 58.738 43.478 1.02 0.00 44.49 2.71
1008 1260 2.568623 CACCTTCTAGTTTGGTGGCT 57.431 50.000 17.52 0.00 45.29 4.75
1078 1330 7.474190 ACATTTGGAAGTTCAAAGCATTTTTG 58.526 30.769 5.01 0.00 39.59 2.44
1083 1335 6.114767 ACAAACATTTGGAAGTTCAAAGCAT 58.885 32.000 5.01 0.00 42.34 3.79
1146 1400 7.178983 ACAGGCCAAAGAAGAAATTCATGATTA 59.821 33.333 5.01 0.00 0.00 1.75
1147 1401 6.013984 ACAGGCCAAAGAAGAAATTCATGATT 60.014 34.615 5.01 0.00 0.00 2.57
1166 1420 5.163550 GGACAATTATGGTTTTAGACAGGCC 60.164 44.000 0.00 0.00 0.00 5.19
1180 1434 7.041780 GCCAGAACAGTGTATAGGACAATTATG 60.042 40.741 10.91 0.00 40.66 1.90
1181 1435 6.992715 GCCAGAACAGTGTATAGGACAATTAT 59.007 38.462 10.91 0.00 40.66 1.28
1192 1446 2.949177 TTGGTGCCAGAACAGTGTAT 57.051 45.000 0.00 0.00 0.00 2.29
1216 1470 6.706716 GGTGCCAGAAAATAGTAGAGGATAAC 59.293 42.308 0.00 0.00 0.00 1.89
1217 1471 6.385759 TGGTGCCAGAAAATAGTAGAGGATAA 59.614 38.462 0.00 0.00 0.00 1.75
1218 1472 5.903010 TGGTGCCAGAAAATAGTAGAGGATA 59.097 40.000 0.00 0.00 0.00 2.59
1219 1473 4.721776 TGGTGCCAGAAAATAGTAGAGGAT 59.278 41.667 0.00 0.00 0.00 3.24
1221 1475 4.487714 TGGTGCCAGAAAATAGTAGAGG 57.512 45.455 0.00 0.00 0.00 3.69
1222 1476 6.817765 TTTTGGTGCCAGAAAATAGTAGAG 57.182 37.500 0.00 0.00 0.00 2.43
1224 1478 6.744112 TGTTTTTGGTGCCAGAAAATAGTAG 58.256 36.000 8.25 0.00 32.98 2.57
1268 1555 8.863872 AGCAAAAGGATAAGTTTACATACACT 57.136 30.769 0.00 0.00 0.00 3.55
1287 1574 5.936956 AGTTCAAATGTGTGGAAAAGCAAAA 59.063 32.000 0.00 0.00 0.00 2.44
1292 1579 6.204359 CAGAGAGTTCAAATGTGTGGAAAAG 58.796 40.000 0.00 0.00 0.00 2.27
1394 1734 9.442047 CTTGCCTAAAATTATCTAGGGATACTG 57.558 37.037 9.21 0.00 35.77 2.74
1415 1755 3.570125 AGGAAACTAAGAAAGTGCTTGCC 59.430 43.478 0.00 0.00 40.61 4.52
1416 1756 4.837896 AGGAAACTAAGAAAGTGCTTGC 57.162 40.909 0.00 0.00 40.61 4.01
1431 1771 5.301045 ACAGCTAGGTTTGGTAAAAGGAAAC 59.699 40.000 0.00 0.00 0.00 2.78
1432 1772 5.300792 CACAGCTAGGTTTGGTAAAAGGAAA 59.699 40.000 0.00 0.00 0.00 3.13
1433 1773 4.825085 CACAGCTAGGTTTGGTAAAAGGAA 59.175 41.667 0.00 0.00 0.00 3.36
1434 1774 4.141344 ACACAGCTAGGTTTGGTAAAAGGA 60.141 41.667 12.40 0.00 0.00 3.36
1435 1775 4.142038 ACACAGCTAGGTTTGGTAAAAGG 58.858 43.478 12.40 0.00 0.00 3.11
1436 1776 5.995897 AGTACACAGCTAGGTTTGGTAAAAG 59.004 40.000 12.40 0.00 0.00 2.27
1437 1777 5.932455 AGTACACAGCTAGGTTTGGTAAAA 58.068 37.500 12.40 0.00 0.00 1.52
1459 1799 7.595604 TGTTATTTTAAAGGGTTAAAGGCGAG 58.404 34.615 0.00 0.00 39.69 5.03
1462 1802 7.117236 GTGCTGTTATTTTAAAGGGTTAAAGGC 59.883 37.037 0.00 0.00 39.69 4.35
1542 1885 9.817809 GTAAAGATGTATCTTCACACCTGAATA 57.182 33.333 7.52 0.00 45.83 1.75
1543 1886 7.770897 GGTAAAGATGTATCTTCACACCTGAAT 59.229 37.037 17.28 1.87 45.83 2.57
1577 1920 3.835378 TCGTGTTCACGCTGTTCTATA 57.165 42.857 18.63 0.00 0.00 1.31
1595 1938 1.986698 CAAAGCTTTTGAGGGCATCG 58.013 50.000 9.53 0.00 0.00 3.84
1626 1969 1.620822 AGTAAACTTGGGCTGCCTTG 58.379 50.000 19.68 11.17 0.00 3.61
1653 1996 8.669243 GGTAATACAAACCTGAGAAAGAATGAG 58.331 37.037 0.00 0.00 33.97 2.90
1737 2080 5.393678 GCAAAGTTCTCCCACTGTTACAAAA 60.394 40.000 0.00 0.00 0.00 2.44
1762 2105 1.941403 ATCCCATGTGGCCCTTCTGG 61.941 60.000 0.00 1.61 37.09 3.86
1774 2117 5.766670 ACAAGCAGTAACATCATATCCCATG 59.233 40.000 0.00 0.00 0.00 3.66
1775 2118 5.766670 CACAAGCAGTAACATCATATCCCAT 59.233 40.000 0.00 0.00 0.00 4.00
1793 2136 3.565902 AGAAGCACCTTAAGTTCACAAGC 59.434 43.478 0.97 0.00 0.00 4.01
1798 2141 4.134563 GTCCAAGAAGCACCTTAAGTTCA 58.865 43.478 0.97 0.00 0.00 3.18
1825 2168 1.215423 CACAAGAATTAGGGGAGGGGG 59.785 57.143 0.00 0.00 0.00 5.40
1826 2169 1.923148 ACACAAGAATTAGGGGAGGGG 59.077 52.381 0.00 0.00 0.00 4.79
1827 2170 2.420129 CGACACAAGAATTAGGGGAGGG 60.420 54.545 0.00 0.00 0.00 4.30
1828 2171 2.236395 ACGACACAAGAATTAGGGGAGG 59.764 50.000 0.00 0.00 0.00 4.30
1829 2172 3.611766 ACGACACAAGAATTAGGGGAG 57.388 47.619 0.00 0.00 0.00 4.30
1830 2173 4.346730 TCTACGACACAAGAATTAGGGGA 58.653 43.478 0.00 0.00 0.00 4.81
1854 2197 8.442384 CACAAGCAAACATTTGAAGTTACTTTT 58.558 29.630 8.54 0.00 40.55 2.27
1883 2226 2.319136 TTGGGTATCGGAATCCAACG 57.681 50.000 0.00 0.00 34.71 4.10
1893 2236 6.526674 GCTTTGTGTTTTTAGATTGGGTATCG 59.473 38.462 0.00 0.00 38.36 2.92
1903 2254 5.827797 ACATCTCTGGCTTTGTGTTTTTAGA 59.172 36.000 0.00 0.00 0.00 2.10
1962 2314 1.077169 GTGGAAACTGGGGAAGGGAAT 59.923 52.381 0.00 0.00 0.00 3.01
2004 2356 7.068226 GGTGTTGCAGGAATATTTGGTATTAGT 59.932 37.037 0.00 0.00 33.16 2.24
2031 2383 5.634896 CAGAATGTGAACAGTTTGATAGGC 58.365 41.667 0.00 0.00 29.08 3.93
2053 2405 1.301716 GAGGGAAGCAACAGTCGCA 60.302 57.895 0.00 0.00 0.00 5.10
2054 2406 0.674895 ATGAGGGAAGCAACAGTCGC 60.675 55.000 0.00 0.00 0.00 5.19
2055 2407 1.813513 AATGAGGGAAGCAACAGTCG 58.186 50.000 0.00 0.00 0.00 4.18
2056 2408 4.207891 TCTAATGAGGGAAGCAACAGTC 57.792 45.455 0.00 0.00 0.00 3.51
2066 2426 4.678256 AGTCAGTCTGTTCTAATGAGGGA 58.322 43.478 0.00 0.00 0.00 4.20
2075 2435 2.703007 AGCAGGAAAGTCAGTCTGTTCT 59.297 45.455 0.00 0.00 0.00 3.01
2082 2442 0.036022 GGCAGAGCAGGAAAGTCAGT 59.964 55.000 0.00 0.00 0.00 3.41
2086 2446 1.542492 CATTGGCAGAGCAGGAAAGT 58.458 50.000 0.00 0.00 0.00 2.66
2179 2539 9.627123 CCACTAGTATTTATCAAATCTTTCCCA 57.373 33.333 0.00 0.00 32.38 4.37
2206 2566 6.291377 ACATGTGGATAACTATAAGTGGCAG 58.709 40.000 0.00 0.00 0.00 4.85
2248 2608 3.356529 AACTTCTGCCACCTAAGATGG 57.643 47.619 0.00 0.00 40.50 3.51
2276 2636 6.685828 CACATCTAGAATCGCAACATTTCTTG 59.314 38.462 0.00 0.00 32.28 3.02
2284 2644 4.566759 TGCTTACACATCTAGAATCGCAAC 59.433 41.667 0.00 0.00 0.00 4.17
2298 2658 2.425312 CTGTTGGTTGGTTGCTTACACA 59.575 45.455 0.00 0.00 0.00 3.72
2325 2685 1.621317 TCAACGGTATGTCTGGCAGAA 59.379 47.619 20.62 10.19 0.00 3.02
2426 2790 9.838339 TGTACAACCATTCAAAACCAATTATTT 57.162 25.926 0.00 0.00 0.00 1.40
2505 2869 4.524328 GTCATGTTTCTTGAGGGGAAATGT 59.476 41.667 0.00 0.00 35.55 2.71
2511 2875 3.490348 ACTTGTCATGTTTCTTGAGGGG 58.510 45.455 0.00 0.00 0.00 4.79
2523 2887 0.734889 GGATGGCCGAACTTGTCATG 59.265 55.000 0.00 0.00 0.00 3.07
2546 2910 3.056393 CAGAATTTGGCTTCAAGCATCCA 60.056 43.478 12.53 0.00 44.75 3.41
2572 2936 7.039784 TGCACAAAAGTAATTCCTCATAGCTTT 60.040 33.333 0.00 0.00 0.00 3.51
2579 2943 5.221402 TGCAATGCACAAAAGTAATTCCTCA 60.221 36.000 2.72 0.00 31.71 3.86
2600 2964 4.081420 GGTTCAGTATCTTCTCCTTCTGCA 60.081 45.833 0.00 0.00 0.00 4.41
2613 2977 3.259902 GAACAACCTCCGGTTCAGTATC 58.740 50.000 0.00 0.00 43.05 2.24
2617 2981 2.928416 GGAACAACCTCCGGTTCAG 58.072 57.895 0.00 0.00 43.05 3.02
2639 3003 2.604139 CCATTGTTTGGGGGTGTAGTT 58.396 47.619 0.00 0.00 42.33 2.24
2660 3024 2.009774 ACATTCGCAATCAGCAGTACC 58.990 47.619 0.00 0.00 46.13 3.34
2690 3054 1.063942 GGAGGGGTTAGGGGTCATTTG 60.064 57.143 0.00 0.00 0.00 2.32
2691 3055 1.305886 GGAGGGGTTAGGGGTCATTT 58.694 55.000 0.00 0.00 0.00 2.32
2692 3056 0.626574 GGGAGGGGTTAGGGGTCATT 60.627 60.000 0.00 0.00 0.00 2.57
2693 3057 1.005690 GGGAGGGGTTAGGGGTCAT 59.994 63.158 0.00 0.00 0.00 3.06
2694 3058 2.457794 GGGAGGGGTTAGGGGTCA 59.542 66.667 0.00 0.00 0.00 4.02
2695 3059 2.367920 GGGGAGGGGTTAGGGGTC 60.368 72.222 0.00 0.00 0.00 4.46
2843 3207 7.554118 CCAAAAGGAAGATAGCTGATTAGTTGA 59.446 37.037 0.00 0.00 0.00 3.18
2921 3285 1.995376 AAGAAAACCCGGAATGCTGT 58.005 45.000 0.73 0.00 0.00 4.40
2926 3290 4.160252 CCATCATCAAAGAAAACCCGGAAT 59.840 41.667 0.73 0.00 0.00 3.01
2992 3356 9.204570 TCAAAACATTAAGCACTAGAACTAGAC 57.795 33.333 14.64 7.07 36.97 2.59
3030 3394 1.880941 ATTCAGGACAGGGGGAGTAC 58.119 55.000 0.00 0.00 0.00 2.73
3031 3395 2.661176 AATTCAGGACAGGGGGAGTA 57.339 50.000 0.00 0.00 0.00 2.59
3032 3396 2.197465 GTAATTCAGGACAGGGGGAGT 58.803 52.381 0.00 0.00 0.00 3.85
3033 3397 2.482494 AGTAATTCAGGACAGGGGGAG 58.518 52.381 0.00 0.00 0.00 4.30
3034 3398 2.576191 CAAGTAATTCAGGACAGGGGGA 59.424 50.000 0.00 0.00 0.00 4.81
3035 3399 2.308866 ACAAGTAATTCAGGACAGGGGG 59.691 50.000 0.00 0.00 0.00 5.40
3036 3400 3.610911 GACAAGTAATTCAGGACAGGGG 58.389 50.000 0.00 0.00 0.00 4.79
3037 3401 3.262420 CGACAAGTAATTCAGGACAGGG 58.738 50.000 0.00 0.00 0.00 4.45
3038 3402 3.926616 ACGACAAGTAATTCAGGACAGG 58.073 45.455 0.00 0.00 0.00 4.00
3039 3403 8.697846 TTTATACGACAAGTAATTCAGGACAG 57.302 34.615 0.00 0.00 39.04 3.51
3040 3404 9.093970 CATTTATACGACAAGTAATTCAGGACA 57.906 33.333 0.00 0.00 39.04 4.02
3041 3405 9.309516 TCATTTATACGACAAGTAATTCAGGAC 57.690 33.333 0.00 0.00 39.04 3.85
3042 3406 9.878667 TTCATTTATACGACAAGTAATTCAGGA 57.121 29.630 0.00 0.00 39.04 3.86
3051 3415 9.181805 CTCGATACATTCATTTATACGACAAGT 57.818 33.333 0.00 0.00 0.00 3.16
3052 3416 9.394477 TCTCGATACATTCATTTATACGACAAG 57.606 33.333 0.00 0.00 0.00 3.16
3053 3417 9.177304 GTCTCGATACATTCATTTATACGACAA 57.823 33.333 0.00 0.00 0.00 3.18
3054 3418 7.806487 GGTCTCGATACATTCATTTATACGACA 59.194 37.037 3.17 0.00 0.00 4.35
3055 3419 8.021973 AGGTCTCGATACATTCATTTATACGAC 58.978 37.037 3.17 0.00 0.00 4.34
3056 3420 8.107399 AGGTCTCGATACATTCATTTATACGA 57.893 34.615 3.17 0.00 0.00 3.43
3068 3432 9.751542 CAGAACTAAAAATAGGTCTCGATACAT 57.248 33.333 3.17 0.00 41.87 2.29
3069 3433 7.705325 GCAGAACTAAAAATAGGTCTCGATACA 59.295 37.037 3.17 0.00 41.87 2.29
3070 3434 7.705325 TGCAGAACTAAAAATAGGTCTCGATAC 59.295 37.037 0.51 0.00 41.87 2.24
3071 3435 7.778083 TGCAGAACTAAAAATAGGTCTCGATA 58.222 34.615 0.51 0.00 41.87 2.92
3072 3436 6.640518 TGCAGAACTAAAAATAGGTCTCGAT 58.359 36.000 0.51 0.00 41.87 3.59
3073 3437 6.032956 TGCAGAACTAAAAATAGGTCTCGA 57.967 37.500 0.51 0.00 41.87 4.04
3074 3438 6.910536 ATGCAGAACTAAAAATAGGTCTCG 57.089 37.500 0.51 0.00 41.87 4.04
3075 3439 8.718102 TGTATGCAGAACTAAAAATAGGTCTC 57.282 34.615 0.51 0.00 41.87 3.36
3076 3440 9.331282 GATGTATGCAGAACTAAAAATAGGTCT 57.669 33.333 0.00 0.00 44.42 3.85
3077 3441 8.560374 GGATGTATGCAGAACTAAAAATAGGTC 58.440 37.037 0.00 0.00 34.08 3.85
3078 3442 8.052748 TGGATGTATGCAGAACTAAAAATAGGT 58.947 33.333 0.00 0.00 0.00 3.08
3079 3443 8.450578 TGGATGTATGCAGAACTAAAAATAGG 57.549 34.615 0.00 0.00 0.00 2.57
3082 3446 9.807649 GAAATGGATGTATGCAGAACTAAAAAT 57.192 29.630 0.00 0.00 0.00 1.82
3083 3447 9.023962 AGAAATGGATGTATGCAGAACTAAAAA 57.976 29.630 0.00 0.00 0.00 1.94
3084 3448 8.579850 AGAAATGGATGTATGCAGAACTAAAA 57.420 30.769 0.00 0.00 0.00 1.52
3085 3449 9.851686 ATAGAAATGGATGTATGCAGAACTAAA 57.148 29.630 0.00 0.00 0.00 1.85
3086 3450 9.494271 GATAGAAATGGATGTATGCAGAACTAA 57.506 33.333 0.00 0.00 0.00 2.24
3087 3451 8.097038 GGATAGAAATGGATGTATGCAGAACTA 58.903 37.037 0.00 0.00 0.00 2.24
3088 3452 6.939163 GGATAGAAATGGATGTATGCAGAACT 59.061 38.462 0.00 0.00 0.00 3.01
3089 3453 6.712095 TGGATAGAAATGGATGTATGCAGAAC 59.288 38.462 0.00 0.00 0.00 3.01
3090 3454 6.840527 TGGATAGAAATGGATGTATGCAGAA 58.159 36.000 0.00 0.00 0.00 3.02
3091 3455 6.438186 TGGATAGAAATGGATGTATGCAGA 57.562 37.500 0.00 0.00 0.00 4.26
3092 3456 7.698506 AATGGATAGAAATGGATGTATGCAG 57.301 36.000 0.00 0.00 28.34 4.41
3093 3457 8.481492 AAAATGGATAGAAATGGATGTATGCA 57.519 30.769 0.00 0.00 0.00 3.96
3094 3458 9.199982 CAAAAATGGATAGAAATGGATGTATGC 57.800 33.333 0.00 0.00 0.00 3.14
3097 3461 9.473007 TCACAAAAATGGATAGAAATGGATGTA 57.527 29.630 0.00 0.00 0.00 2.29
3098 3462 8.253113 GTCACAAAAATGGATAGAAATGGATGT 58.747 33.333 0.00 0.00 0.00 3.06
3099 3463 8.252417 TGTCACAAAAATGGATAGAAATGGATG 58.748 33.333 0.00 0.00 0.00 3.51
3100 3464 8.365060 TGTCACAAAAATGGATAGAAATGGAT 57.635 30.769 0.00 0.00 0.00 3.41
3101 3465 7.773489 TGTCACAAAAATGGATAGAAATGGA 57.227 32.000 0.00 0.00 0.00 3.41
3102 3466 8.830201 TTTGTCACAAAAATGGATAGAAATGG 57.170 30.769 0.00 0.00 0.00 3.16
3103 3467 9.480053 ACTTTGTCACAAAAATGGATAGAAATG 57.520 29.630 4.13 0.00 0.00 2.32
3110 3474 9.054922 CCAAATTACTTTGTCACAAAAATGGAT 57.945 29.630 4.13 0.00 40.15 3.41
3111 3475 7.497249 CCCAAATTACTTTGTCACAAAAATGGA 59.503 33.333 4.13 0.00 40.15 3.41
3112 3476 7.497249 TCCCAAATTACTTTGTCACAAAAATGG 59.503 33.333 4.13 6.56 40.15 3.16
3113 3477 8.430801 TCCCAAATTACTTTGTCACAAAAATG 57.569 30.769 4.13 0.00 40.15 2.32
3114 3478 9.054922 CATCCCAAATTACTTTGTCACAAAAAT 57.945 29.630 4.13 0.00 40.15 1.82
3115 3479 7.497249 CCATCCCAAATTACTTTGTCACAAAAA 59.503 33.333 4.13 0.00 40.15 1.94
3116 3480 6.989169 CCATCCCAAATTACTTTGTCACAAAA 59.011 34.615 4.13 0.00 40.15 2.44
3117 3481 6.325028 TCCATCCCAAATTACTTTGTCACAAA 59.675 34.615 2.24 2.24 40.15 2.83
3118 3482 5.835819 TCCATCCCAAATTACTTTGTCACAA 59.164 36.000 5.01 0.00 40.15 3.33
3119 3483 5.389520 TCCATCCCAAATTACTTTGTCACA 58.610 37.500 5.01 0.00 40.15 3.58
3120 3484 5.105756 CCTCCATCCCAAATTACTTTGTCAC 60.106 44.000 5.01 0.00 40.15 3.67
3121 3485 5.016173 CCTCCATCCCAAATTACTTTGTCA 58.984 41.667 5.01 0.00 40.15 3.58
3122 3486 4.402474 CCCTCCATCCCAAATTACTTTGTC 59.598 45.833 5.01 0.00 40.15 3.18
3123 3487 4.045334 TCCCTCCATCCCAAATTACTTTGT 59.955 41.667 5.01 0.00 40.15 2.83
3124 3488 4.609301 TCCCTCCATCCCAAATTACTTTG 58.391 43.478 0.00 0.00 41.22 2.77
3125 3489 4.294970 ACTCCCTCCATCCCAAATTACTTT 59.705 41.667 0.00 0.00 0.00 2.66
3126 3490 3.858638 ACTCCCTCCATCCCAAATTACTT 59.141 43.478 0.00 0.00 0.00 2.24
3127 3491 3.474920 ACTCCCTCCATCCCAAATTACT 58.525 45.455 0.00 0.00 0.00 2.24
3128 3492 3.953542 ACTCCCTCCATCCCAAATTAC 57.046 47.619 0.00 0.00 0.00 1.89
3129 3493 4.376223 TGTACTCCCTCCATCCCAAATTA 58.624 43.478 0.00 0.00 0.00 1.40
3130 3494 3.197983 TGTACTCCCTCCATCCCAAATT 58.802 45.455 0.00 0.00 0.00 1.82
3131 3495 2.858644 TGTACTCCCTCCATCCCAAAT 58.141 47.619 0.00 0.00 0.00 2.32
3132 3496 2.352561 TGTACTCCCTCCATCCCAAA 57.647 50.000 0.00 0.00 0.00 3.28
3133 3497 2.587060 ATGTACTCCCTCCATCCCAA 57.413 50.000 0.00 0.00 0.00 4.12
3134 3498 2.587060 AATGTACTCCCTCCATCCCA 57.413 50.000 0.00 0.00 0.00 4.37
3135 3499 6.893020 ATAATAATGTACTCCCTCCATCCC 57.107 41.667 0.00 0.00 0.00 3.85
3136 3500 7.824779 GTGAATAATAATGTACTCCCTCCATCC 59.175 40.741 0.00 0.00 0.00 3.51
3137 3501 7.824779 GGTGAATAATAATGTACTCCCTCCATC 59.175 40.741 0.00 0.00 0.00 3.51
3138 3502 7.517604 AGGTGAATAATAATGTACTCCCTCCAT 59.482 37.037 0.00 0.00 0.00 3.41
3139 3503 6.849697 AGGTGAATAATAATGTACTCCCTCCA 59.150 38.462 0.00 0.00 0.00 3.86
3140 3504 7.162082 CAGGTGAATAATAATGTACTCCCTCC 58.838 42.308 0.00 0.00 0.00 4.30
3141 3505 6.651225 GCAGGTGAATAATAATGTACTCCCTC 59.349 42.308 0.00 0.00 0.00 4.30
3142 3506 6.465894 GGCAGGTGAATAATAATGTACTCCCT 60.466 42.308 0.00 0.00 0.00 4.20
3143 3507 5.705905 GGCAGGTGAATAATAATGTACTCCC 59.294 44.000 0.00 0.00 0.00 4.30
3144 3508 6.296026 TGGCAGGTGAATAATAATGTACTCC 58.704 40.000 0.00 0.00 0.00 3.85
3145 3509 7.880195 AGATGGCAGGTGAATAATAATGTACTC 59.120 37.037 0.00 0.00 0.00 2.59
3170 3534 3.367498 GGTTAGACAGGTCTGTACAGCAG 60.367 52.174 18.45 9.62 45.05 4.24
3175 3539 9.477484 CATTATATTGGTTAGACAGGTCTGTAC 57.523 37.037 12.07 9.44 45.05 2.90
3190 3554 9.745018 CTCAATGATTACTCCCATTATATTGGT 57.255 33.333 11.73 0.00 34.77 3.67
3208 3572 3.328931 AGACCACCAGACAACTCAATGAT 59.671 43.478 0.00 0.00 0.00 2.45
3214 3578 2.564947 AGATCAGACCACCAGACAACTC 59.435 50.000 0.00 0.00 0.00 3.01
3231 3595 7.753132 CCTATAGTCGAATGCTTAGTGAAGATC 59.247 40.741 0.00 0.00 34.25 2.75
3317 3697 9.731819 GGCATATTAAAGTAAAAGGTTAGAAGC 57.268 33.333 0.00 0.00 0.00 3.86
3324 3704 9.420118 TCATCATGGCATATTAAAGTAAAAGGT 57.580 29.630 0.00 0.00 0.00 3.50
3325 3705 9.903682 CTCATCATGGCATATTAAAGTAAAAGG 57.096 33.333 0.00 0.00 0.00 3.11
3339 3719 8.636213 CCTTTAAAATCTTACTCATCATGGCAT 58.364 33.333 0.00 0.00 0.00 4.40
3477 3864 5.104193 ACACCATGAGATTCTCCTTAAGCAT 60.104 40.000 11.12 0.00 0.00 3.79
3537 3924 4.081087 GCAGACTCCACTGGTAAAGGATTA 60.081 45.833 0.00 0.00 38.22 1.75
3559 3946 5.756195 TCATATAATGCAACAGTTGAGGC 57.244 39.130 17.99 2.13 0.00 4.70
3651 4038 3.581024 AGTGCATTTACATTGGTGCTG 57.419 42.857 0.00 0.00 38.37 4.41
3696 4083 8.359642 ACAGTATTTTTCTCATGCAAAGCTAAA 58.640 29.630 0.00 0.00 0.00 1.85
3699 4086 6.154445 CACAGTATTTTTCTCATGCAAAGCT 58.846 36.000 0.00 0.00 0.00 3.74
3714 4101 4.588899 TCATTAGGCTGTGCACAGTATTT 58.411 39.130 39.30 26.28 45.45 1.40
3747 4134 5.046663 GGGGAATAAGAAAACATTTCTGCCA 60.047 40.000 6.14 0.00 0.00 4.92
3825 4214 8.416329 CAAAGATTAACCCCTATCAATTCCTTG 58.584 37.037 0.00 0.00 0.00 3.61
3835 4224 6.557568 TCAAACACCAAAGATTAACCCCTAT 58.442 36.000 0.00 0.00 0.00 2.57
3840 4229 9.203421 CCTAAAATCAAACACCAAAGATTAACC 57.797 33.333 0.00 0.00 31.01 2.85
3849 4238 9.103861 GATTTTTCACCTAAAATCAAACACCAA 57.896 29.630 13.89 0.00 46.44 3.67
3891 4280 0.034670 GCACTCCCAGGCAGAAAGAT 60.035 55.000 0.00 0.00 0.00 2.40
3913 4302 6.210078 TTTGGTTTGATAAACAAAGTAGCCG 58.790 36.000 6.74 0.00 43.97 5.52
3931 4320 4.736464 GCTCGGTCAAAATCAACTTTGGTT 60.736 41.667 0.00 0.00 37.00 3.67
3946 4335 1.587043 CGGTCTCAGAAGCTCGGTCA 61.587 60.000 0.00 0.00 0.00 4.02
4009 7634 5.240403 GCAGAGTTTCTTCAGGTCTTCAAAT 59.760 40.000 0.00 0.00 0.00 2.32
4036 7661 2.587522 ACGAGGTCATCAGCTATAGCA 58.412 47.619 26.07 7.38 45.16 3.49
4050 7675 0.535797 GCAGGCTTAGGTAACGAGGT 59.464 55.000 0.00 0.00 46.39 3.85
4054 7679 4.104143 CCGCAGGCTTAGGTAACG 57.896 61.111 0.00 0.00 46.14 3.18
4070 7695 2.428171 ACTGTTGATGGTTGCATATGCC 59.572 45.455 24.54 10.19 41.18 4.40
4071 7696 3.788333 ACTGTTGATGGTTGCATATGC 57.212 42.857 21.09 21.09 42.50 3.14
4073 7698 5.010922 ACACAAACTGTTGATGGTTGCATAT 59.989 36.000 0.00 0.00 38.20 1.78
4081 7706 2.095768 CCGCTACACAAACTGTTGATGG 60.096 50.000 0.00 0.00 38.20 3.51
4090 7715 5.291293 ACATAATGAACCGCTACACAAAC 57.709 39.130 0.00 0.00 0.00 2.93
4092 7717 7.436430 TTTTACATAATGAACCGCTACACAA 57.564 32.000 0.00 0.00 0.00 3.33
4097 7722 6.261381 GGGTGATTTTACATAATGAACCGCTA 59.739 38.462 0.00 0.00 0.00 4.26
4165 7790 0.956410 CGCCAAACACGGGGAATGTA 60.956 55.000 0.00 0.00 41.43 2.29
4166 7791 2.265182 CGCCAAACACGGGGAATGT 61.265 57.895 0.00 0.00 41.43 2.71
4254 7879 7.751348 GCAATATTCAGAGATTGATTCATGAGC 59.249 37.037 10.10 0.00 36.76 4.26
4357 7983 7.408132 TTCAGTTCAGTTCTGAAGTAATTCG 57.592 36.000 18.56 9.34 43.88 3.34
4370 7996 6.109359 GCTATATCACAGGTTCAGTTCAGTT 58.891 40.000 0.00 0.00 0.00 3.16
4371 7997 5.187772 TGCTATATCACAGGTTCAGTTCAGT 59.812 40.000 0.00 0.00 0.00 3.41
4372 7998 5.664457 TGCTATATCACAGGTTCAGTTCAG 58.336 41.667 0.00 0.00 0.00 3.02
4373 7999 5.422012 TCTGCTATATCACAGGTTCAGTTCA 59.578 40.000 5.36 0.00 34.57 3.18
4374 8000 5.907207 TCTGCTATATCACAGGTTCAGTTC 58.093 41.667 5.36 0.00 34.57 3.01
4415 8041 1.408702 TGCCTTCTGAAGCAAACAACC 59.591 47.619 11.93 0.00 35.69 3.77
4418 8044 1.761449 TGTGCCTTCTGAAGCAAACA 58.239 45.000 11.93 11.71 41.48 2.83
4515 8141 5.707298 ACATACAATCTTTGAACTCCCAGTG 59.293 40.000 0.00 0.00 0.00 3.66
4553 8179 4.140518 TGCACAACTTATAACTGCAACG 57.859 40.909 0.00 0.00 34.97 4.10
4612 8238 1.078918 CTGCCTCAGGATGTTGCGA 60.079 57.895 0.00 0.00 36.70 5.10
4622 8248 2.327200 TGAATCTGATGCTGCCTCAG 57.673 50.000 23.65 23.65 41.23 3.35
4642 8268 1.228367 CCTCTGCAACAAGCCCTGT 60.228 57.895 0.00 0.00 44.83 4.00
4648 8274 0.321919 TGCCTAGCCTCTGCAACAAG 60.322 55.000 0.00 0.00 41.13 3.16
4714 8344 1.651987 GATCGAGATGAAAACCGGCA 58.348 50.000 0.00 0.00 0.00 5.69
4763 8393 2.571212 CTTACTGTCCAAACTGCCACA 58.429 47.619 0.00 0.00 0.00 4.17
4764 8394 1.266989 GCTTACTGTCCAAACTGCCAC 59.733 52.381 0.00 0.00 0.00 5.01
4785 8415 1.411246 ACTGCCACACACGAGAAACTA 59.589 47.619 0.00 0.00 0.00 2.24
4793 8423 0.248458 GTCCAAAACTGCCACACACG 60.248 55.000 0.00 0.00 0.00 4.49
4863 8501 1.897560 CAGTTTCTTCAGTGGGGGTC 58.102 55.000 0.00 0.00 0.00 4.46
4864 8502 0.178990 GCAGTTTCTTCAGTGGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
4866 8504 0.178992 TGGCAGTTTCTTCAGTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
4870 8508 0.886490 CGGCTGGCAGTTTCTTCAGT 60.886 55.000 17.16 0.00 0.00 3.41
4874 8512 3.357079 CGCGGCTGGCAGTTTCTT 61.357 61.111 17.16 0.00 43.84 2.52
4898 8536 4.320788 GCCAATAGTCAGGATAGCAATTGC 60.321 45.833 23.05 23.05 42.49 3.56
4899 8537 5.068636 AGCCAATAGTCAGGATAGCAATTG 58.931 41.667 0.00 0.00 0.00 2.32
4900 8538 5.316158 AGCCAATAGTCAGGATAGCAATT 57.684 39.130 0.00 0.00 0.00 2.32
4901 8539 4.989875 AGCCAATAGTCAGGATAGCAAT 57.010 40.909 0.00 0.00 0.00 3.56
4902 8540 4.444876 GGAAGCCAATAGTCAGGATAGCAA 60.445 45.833 0.00 0.00 0.00 3.91
4903 8541 3.071602 GGAAGCCAATAGTCAGGATAGCA 59.928 47.826 0.00 0.00 0.00 3.49
4904 8542 3.326297 AGGAAGCCAATAGTCAGGATAGC 59.674 47.826 0.00 0.00 0.00 2.97
4905 8543 5.559148 AAGGAAGCCAATAGTCAGGATAG 57.441 43.478 0.00 0.00 0.00 2.08
4906 8544 5.667626 AGAAAGGAAGCCAATAGTCAGGATA 59.332 40.000 0.00 0.00 0.00 2.59
4907 8545 4.476479 AGAAAGGAAGCCAATAGTCAGGAT 59.524 41.667 0.00 0.00 0.00 3.24
4908 8546 3.846588 AGAAAGGAAGCCAATAGTCAGGA 59.153 43.478 0.00 0.00 0.00 3.86
4909 8547 4.227864 AGAAAGGAAGCCAATAGTCAGG 57.772 45.455 0.00 0.00 0.00 3.86
4910 8548 7.687941 TTAAAGAAAGGAAGCCAATAGTCAG 57.312 36.000 0.00 0.00 0.00 3.51
4911 8549 7.122650 CCATTAAAGAAAGGAAGCCAATAGTCA 59.877 37.037 0.00 0.00 0.00 3.41
4912 8550 7.484140 CCATTAAAGAAAGGAAGCCAATAGTC 58.516 38.462 0.00 0.00 0.00 2.59
4913 8551 6.127338 GCCATTAAAGAAAGGAAGCCAATAGT 60.127 38.462 0.00 0.00 0.00 2.12
4914 8552 6.097412 AGCCATTAAAGAAAGGAAGCCAATAG 59.903 38.462 0.00 0.00 0.00 1.73
4915 8553 5.957774 AGCCATTAAAGAAAGGAAGCCAATA 59.042 36.000 0.00 0.00 0.00 1.90
4916 8554 4.779489 AGCCATTAAAGAAAGGAAGCCAAT 59.221 37.500 0.00 0.00 0.00 3.16
4917 8555 4.159557 AGCCATTAAAGAAAGGAAGCCAA 58.840 39.130 0.00 0.00 0.00 4.52
4918 8556 3.778265 AGCCATTAAAGAAAGGAAGCCA 58.222 40.909 0.00 0.00 0.00 4.75
4919 8557 4.808414 AAGCCATTAAAGAAAGGAAGCC 57.192 40.909 0.00 0.00 0.00 4.35
4920 8558 9.869757 TTAATAAAGCCATTAAAGAAAGGAAGC 57.130 29.630 0.00 0.00 29.54 3.86
4932 8570 9.377312 GCAATTGGACTTTTAATAAAGCCATTA 57.623 29.630 7.72 3.22 43.72 1.90
4933 8571 7.882271 TGCAATTGGACTTTTAATAAAGCCATT 59.118 29.630 7.72 7.84 43.72 3.16
4934 8572 7.393216 TGCAATTGGACTTTTAATAAAGCCAT 58.607 30.769 7.72 1.02 43.72 4.40
4935 8573 6.763355 TGCAATTGGACTTTTAATAAAGCCA 58.237 32.000 7.72 0.00 43.72 4.75
4936 8574 7.011389 GGATGCAATTGGACTTTTAATAAAGCC 59.989 37.037 7.72 0.00 43.72 4.35
4937 8575 7.548780 TGGATGCAATTGGACTTTTAATAAAGC 59.451 33.333 7.72 0.00 43.72 3.51
4938 8576 9.434420 TTGGATGCAATTGGACTTTTAATAAAG 57.566 29.630 7.72 0.00 45.08 1.85
4939 8577 9.784531 TTTGGATGCAATTGGACTTTTAATAAA 57.215 25.926 7.72 0.00 0.00 1.40
4940 8578 9.213799 GTTTGGATGCAATTGGACTTTTAATAA 57.786 29.630 7.72 0.00 0.00 1.40
4941 8579 8.370940 TGTTTGGATGCAATTGGACTTTTAATA 58.629 29.630 7.72 0.00 0.00 0.98
4942 8580 7.173047 GTGTTTGGATGCAATTGGACTTTTAAT 59.827 33.333 7.72 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.