Multiple sequence alignment - TraesCS5A01G044400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G044400 chr5A 100.000 2817 0 0 1 2817 40812223 40815039 0.000000e+00 5203.0
1 TraesCS5A01G044400 chr5A 87.518 705 40 17 724 1386 40628624 40629322 0.000000e+00 771.0
2 TraesCS5A01G044400 chr5A 84.986 726 61 31 703 1386 40684314 40685033 0.000000e+00 693.0
3 TraesCS5A01G044400 chr5A 82.781 755 72 41 782 1515 40925116 40925833 3.080000e-174 621.0
4 TraesCS5A01G044400 chr5A 87.432 183 21 2 1765 1945 40687325 40687507 2.840000e-50 209.0
5 TraesCS5A01G044400 chr5A 93.043 115 8 0 2702 2816 638637101 638636987 4.830000e-38 169.0
6 TraesCS5A01G044400 chr5A 90.984 122 11 0 2695 2816 693552282 693552403 6.240000e-37 165.0
7 TraesCS5A01G044400 chr5A 90.517 116 11 0 2701 2816 359043188 359043303 1.350000e-33 154.0
8 TraesCS5A01G044400 chr5B 92.941 1615 83 12 3 1594 54709209 54710815 0.000000e+00 2322.0
9 TraesCS5A01G044400 chr5B 85.463 853 69 34 703 1509 54549101 54549944 0.000000e+00 837.0
10 TraesCS5A01G044400 chr5B 86.351 718 37 23 724 1386 54508304 54509015 0.000000e+00 726.0
11 TraesCS5A01G044400 chr5B 86.306 555 39 17 890 1410 55028303 55028854 1.130000e-158 569.0
12 TraesCS5A01G044400 chr5B 96.087 230 8 1 1786 2014 54710828 54711057 9.530000e-100 374.0
13 TraesCS5A01G044400 chr5B 84.926 272 34 4 1759 2027 54550075 54550342 4.630000e-68 268.0
14 TraesCS5A01G044400 chr5B 80.426 235 28 12 783 1004 54845260 54845489 2.250000e-36 163.0
15 TraesCS5A01G044400 chr5B 81.395 129 11 9 592 710 54507043 54507168 2.990000e-15 93.5
16 TraesCS5A01G044400 chr5D 92.611 1624 82 14 3 1594 51697244 51698861 0.000000e+00 2300.0
17 TraesCS5A01G044400 chr5D 91.429 910 65 5 1799 2705 565811963 565812862 0.000000e+00 1236.0
18 TraesCS5A01G044400 chr5D 92.636 679 28 6 724 1386 51637162 51637834 0.000000e+00 957.0
19 TraesCS5A01G044400 chr5D 86.401 853 61 32 703 1508 51674898 51675742 0.000000e+00 881.0
20 TraesCS5A01G044400 chr5D 86.685 736 59 20 703 1409 51860633 51861358 0.000000e+00 780.0
21 TraesCS5A01G044400 chr5D 83.622 867 72 47 703 1515 51851906 51852756 0.000000e+00 750.0
22 TraesCS5A01G044400 chr5D 82.105 760 70 31 703 1410 51892600 51893345 8.690000e-165 590.0
23 TraesCS5A01G044400 chr5D 89.474 456 38 4 1759 2212 51698860 51699307 4.070000e-158 568.0
24 TraesCS5A01G044400 chr5D 93.436 259 12 1 2210 2468 51699389 51699642 2.050000e-101 379.0
25 TraesCS5A01G044400 chr5D 91.983 237 14 3 2470 2703 51745012 51745246 7.520000e-86 327.0
26 TraesCS5A01G044400 chr5D 90.830 229 20 1 1765 1992 51676261 51676489 3.530000e-79 305.0
27 TraesCS5A01G044400 chr5D 80.579 242 27 8 796 1022 51846925 51847161 4.830000e-38 169.0
28 TraesCS5A01G044400 chr5D 97.849 93 2 0 1502 1594 565811846 565811938 8.080000e-36 161.0
29 TraesCS5A01G044400 chr3D 91.716 169 14 0 1595 1763 140762446 140762278 4.690000e-58 235.0
30 TraesCS5A01G044400 chr3D 91.304 115 10 0 2702 2816 54777176 54777062 1.040000e-34 158.0
31 TraesCS5A01G044400 chrUn 90.964 166 15 0 1595 1760 272972167 272972332 1.020000e-54 224.0
32 TraesCS5A01G044400 chrUn 90.964 166 15 0 1595 1760 347397387 347397222 1.020000e-54 224.0
33 TraesCS5A01G044400 chr4D 89.714 175 18 0 1590 1764 327965891 327965717 1.020000e-54 224.0
34 TraesCS5A01G044400 chr4D 90.909 165 15 0 1596 1760 245284592 245284756 3.650000e-54 222.0
35 TraesCS5A01G044400 chr4D 90.000 170 17 0 1592 1761 23005398 23005229 1.310000e-53 220.0
36 TraesCS5A01G044400 chr7B 90.058 171 16 1 1596 1766 375188786 375188617 1.310000e-53 220.0
37 TraesCS5A01G044400 chr2A 90.419 167 16 0 1596 1762 764932321 764932155 1.310000e-53 220.0
38 TraesCS5A01G044400 chr2B 89.595 173 16 2 1589 1760 185023100 185022929 4.720000e-53 219.0
39 TraesCS5A01G044400 chr7A 93.103 116 8 0 2701 2816 27400526 27400411 1.340000e-38 171.0
40 TraesCS5A01G044400 chr7A 90.517 116 11 0 2701 2816 717839774 717839889 1.350000e-33 154.0
41 TraesCS5A01G044400 chr1B 92.174 115 9 0 2701 2815 632028904 632029018 2.250000e-36 163.0
42 TraesCS5A01G044400 chr1A 91.453 117 8 2 2701 2816 559887292 559887177 2.900000e-35 159.0
43 TraesCS5A01G044400 chr1A 90.517 116 11 0 2701 2816 418038147 418038032 1.350000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G044400 chr5A 40812223 40815039 2816 False 5203.000000 5203 100.000000 1 2817 1 chr5A.!!$F2 2816
1 TraesCS5A01G044400 chr5A 40628624 40629322 698 False 771.000000 771 87.518000 724 1386 1 chr5A.!!$F1 662
2 TraesCS5A01G044400 chr5A 40925116 40925833 717 False 621.000000 621 82.781000 782 1515 1 chr5A.!!$F3 733
3 TraesCS5A01G044400 chr5A 40684314 40687507 3193 False 451.000000 693 86.209000 703 1945 2 chr5A.!!$F6 1242
4 TraesCS5A01G044400 chr5B 54709209 54711057 1848 False 1348.000000 2322 94.514000 3 2014 2 chr5B.!!$F5 2011
5 TraesCS5A01G044400 chr5B 55028303 55028854 551 False 569.000000 569 86.306000 890 1410 1 chr5B.!!$F2 520
6 TraesCS5A01G044400 chr5B 54549101 54550342 1241 False 552.500000 837 85.194500 703 2027 2 chr5B.!!$F4 1324
7 TraesCS5A01G044400 chr5B 54507043 54509015 1972 False 409.750000 726 83.873000 592 1386 2 chr5B.!!$F3 794
8 TraesCS5A01G044400 chr5D 51697244 51699642 2398 False 1082.333333 2300 91.840333 3 2468 3 chr5D.!!$F8 2465
9 TraesCS5A01G044400 chr5D 51637162 51637834 672 False 957.000000 957 92.636000 724 1386 1 chr5D.!!$F1 662
10 TraesCS5A01G044400 chr5D 51860633 51861358 725 False 780.000000 780 86.685000 703 1409 1 chr5D.!!$F5 706
11 TraesCS5A01G044400 chr5D 51851906 51852756 850 False 750.000000 750 83.622000 703 1515 1 chr5D.!!$F4 812
12 TraesCS5A01G044400 chr5D 565811846 565812862 1016 False 698.500000 1236 94.639000 1502 2705 2 chr5D.!!$F9 1203
13 TraesCS5A01G044400 chr5D 51674898 51676489 1591 False 593.000000 881 88.615500 703 1992 2 chr5D.!!$F7 1289
14 TraesCS5A01G044400 chr5D 51892600 51893345 745 False 590.000000 590 82.105000 703 1410 1 chr5D.!!$F6 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.518636 CGAAATGTCTGTGGTGCCAG 59.481 55.0 0.00 0.0 0.00 4.85 F
1014 2180 0.255318 AGCTCTAAGCAAGCCAGCAT 59.745 50.0 1.29 0.0 45.56 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 2417 0.537828 CCCTAGGGTCCTCGTCTAGC 60.538 65.0 20.88 0.0 31.66 3.42 R
2584 6452 0.539986 TCCCATGACGCCTTCCTAAC 59.460 55.0 0.00 0.0 0.00 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.755650 GTGTCTCGAAATGTCTGTGGT 58.244 47.619 0.00 0.00 0.00 4.16
21 22 2.476619 GTGTCTCGAAATGTCTGTGGTG 59.523 50.000 0.00 0.00 0.00 4.17
25 26 0.518636 CGAAATGTCTGTGGTGCCAG 59.481 55.000 0.00 0.00 0.00 4.85
108 111 1.413118 TGGCGATCAAGAGCAGGATA 58.587 50.000 0.00 0.00 34.54 2.59
111 114 1.695813 CGATCAAGAGCAGGATAGCG 58.304 55.000 0.00 0.00 40.15 4.26
117 120 1.317613 AGAGCAGGATAGCGACTCTG 58.682 55.000 0.00 0.00 36.39 3.35
143 147 3.565307 AGTGGTCTTCAGCCAAAATCAA 58.435 40.909 0.00 0.00 37.81 2.57
151 155 7.702348 GGTCTTCAGCCAAAATCAATATAACAC 59.298 37.037 0.00 0.00 0.00 3.32
154 158 7.099266 TCAGCCAAAATCAATATAACACCAG 57.901 36.000 0.00 0.00 0.00 4.00
157 161 7.489113 CAGCCAAAATCAATATAACACCAGTTC 59.511 37.037 0.00 0.00 39.15 3.01
168 172 4.762289 AACACCAGTTCCTATGGAGATC 57.238 45.455 0.00 0.00 40.51 2.75
173 177 3.312890 CAGTTCCTATGGAGATCAGGGT 58.687 50.000 0.00 0.00 31.21 4.34
190 194 1.269831 GGGTGATATGACGAGTCTGCC 60.270 57.143 4.78 0.00 0.00 4.85
191 195 1.600663 GGTGATATGACGAGTCTGCCG 60.601 57.143 4.78 0.00 0.00 5.69
232 236 1.142262 ACTTTCTAAACCGGGTGCAGT 59.858 47.619 6.32 0.00 0.00 4.40
237 241 2.104451 TCTAAACCGGGTGCAGTTACAA 59.896 45.455 6.32 0.00 0.00 2.41
309 313 7.827236 AGATCTACGCTAGCTTACTATTCTCAT 59.173 37.037 13.93 0.00 0.00 2.90
502 506 4.260375 GCTGTGCCAAACTATATCACTTCG 60.260 45.833 0.00 0.00 0.00 3.79
638 643 2.314246 TGTGCACAAAATGGATGGACA 58.686 42.857 19.28 0.00 41.64 4.02
722 745 4.737352 GCATCTCTCTCATCTGACTTGTCC 60.737 50.000 0.00 0.00 0.00 4.02
757 1892 6.610741 AGAGAACTTACAAAAAGTCAGCTG 57.389 37.500 7.63 7.63 0.00 4.24
1014 2180 0.255318 AGCTCTAAGCAAGCCAGCAT 59.745 50.000 1.29 0.00 45.56 3.79
1416 2701 0.608130 TAGATATTCGGCCGCATGCT 59.392 50.000 23.51 18.93 40.92 3.79
1431 2716 1.830587 ATGCTGCTGACACGGGAGAA 61.831 55.000 0.00 0.00 29.37 2.87
1432 2717 1.078848 GCTGCTGACACGGGAGAAT 60.079 57.895 0.00 0.00 29.37 2.40
1433 2718 0.175760 GCTGCTGACACGGGAGAATA 59.824 55.000 0.00 0.00 29.37 1.75
1434 2719 1.202580 GCTGCTGACACGGGAGAATAT 60.203 52.381 0.00 0.00 29.37 1.28
1567 4518 7.548075 CACAATGTAATAACTAGTTTCCGGTCT 59.452 37.037 14.49 1.36 0.00 3.85
1580 4531 0.307760 CCGGTCTTGCAGACAACAAC 59.692 55.000 15.22 1.11 46.79 3.32
1594 4545 6.519761 GCAGACAACAACGACATGTAAAATAG 59.480 38.462 0.00 0.00 32.02 1.73
1595 4546 7.572759 CAGACAACAACGACATGTAAAATAGT 58.427 34.615 0.00 0.00 32.02 2.12
1596 4547 8.705134 CAGACAACAACGACATGTAAAATAGTA 58.295 33.333 0.00 0.00 32.02 1.82
1597 4548 8.706035 AGACAACAACGACATGTAAAATAGTAC 58.294 33.333 0.00 0.00 32.02 2.73
1598 4549 8.597662 ACAACAACGACATGTAAAATAGTACT 57.402 30.769 0.00 0.00 32.02 2.73
1599 4550 8.706035 ACAACAACGACATGTAAAATAGTACTC 58.294 33.333 0.00 0.00 32.02 2.59
1600 4551 8.922676 CAACAACGACATGTAAAATAGTACTCT 58.077 33.333 0.00 0.00 32.02 3.24
1601 4552 8.684973 ACAACGACATGTAAAATAGTACTCTC 57.315 34.615 0.00 0.00 0.00 3.20
1602 4553 8.521176 ACAACGACATGTAAAATAGTACTCTCT 58.479 33.333 0.00 0.00 0.00 3.10
1603 4554 9.355215 CAACGACATGTAAAATAGTACTCTCTT 57.645 33.333 0.00 0.00 0.00 2.85
1604 4555 9.924650 AACGACATGTAAAATAGTACTCTCTTT 57.075 29.630 0.00 0.30 0.00 2.52
1605 4556 9.355215 ACGACATGTAAAATAGTACTCTCTTTG 57.645 33.333 0.00 0.00 0.00 2.77
1606 4557 9.355215 CGACATGTAAAATAGTACTCTCTTTGT 57.645 33.333 0.00 0.00 0.00 2.83
1644 4595 9.832445 AGTCTTTTTAGACATTCTAACAAGTGA 57.168 29.630 16.12 2.62 42.73 3.41
1645 4596 9.865484 GTCTTTTTAGACATTCTAACAAGTGAC 57.135 33.333 16.12 8.79 42.73 3.67
1646 4597 9.832445 TCTTTTTAGACATTCTAACAAGTGACT 57.168 29.630 16.12 0.00 42.73 3.41
1653 4604 7.968956 AGACATTCTAACAAGTGACTACATACG 59.031 37.037 0.00 0.00 0.00 3.06
1654 4605 7.823665 ACATTCTAACAAGTGACTACATACGA 58.176 34.615 0.00 0.00 0.00 3.43
1655 4606 8.301720 ACATTCTAACAAGTGACTACATACGAA 58.698 33.333 0.00 0.00 0.00 3.85
1656 4607 8.799091 CATTCTAACAAGTGACTACATACGAAG 58.201 37.037 0.00 0.00 0.00 3.79
1657 4608 6.320171 TCTAACAAGTGACTACATACGAAGC 58.680 40.000 0.00 0.00 0.00 3.86
1658 4609 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
1659 4610 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
1660 4611 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
1661 4612 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
1662 4613 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
1663 4614 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
1664 4615 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
1665 4616 6.649141 AGTGACTACATACGAAGCAAAATGAA 59.351 34.615 0.00 0.00 0.00 2.57
1666 4617 7.334421 AGTGACTACATACGAAGCAAAATGAAT 59.666 33.333 0.00 0.00 0.00 2.57
1667 4618 7.426456 GTGACTACATACGAAGCAAAATGAATG 59.574 37.037 0.00 0.00 0.00 2.67
1668 4619 7.333174 TGACTACATACGAAGCAAAATGAATGA 59.667 33.333 0.00 0.00 0.00 2.57
1669 4620 8.039603 ACTACATACGAAGCAAAATGAATGAA 57.960 30.769 0.00 0.00 0.00 2.57
1670 4621 8.677300 ACTACATACGAAGCAAAATGAATGAAT 58.323 29.630 0.00 0.00 0.00 2.57
1671 4622 7.975866 ACATACGAAGCAAAATGAATGAATC 57.024 32.000 0.00 0.00 0.00 2.52
1672 4623 7.765307 ACATACGAAGCAAAATGAATGAATCT 58.235 30.769 0.00 0.00 0.00 2.40
1673 4624 8.892723 ACATACGAAGCAAAATGAATGAATCTA 58.107 29.630 0.00 0.00 0.00 1.98
1674 4625 9.888878 CATACGAAGCAAAATGAATGAATCTAT 57.111 29.630 0.00 0.00 0.00 1.98
1677 4628 9.113838 ACGAAGCAAAATGAATGAATCTATACT 57.886 29.630 0.00 0.00 0.00 2.12
1678 4629 9.378597 CGAAGCAAAATGAATGAATCTATACTG 57.621 33.333 0.00 0.00 0.00 2.74
1773 5129 5.352569 CGGAGAGAGTATCATGCAAAGTTTT 59.647 40.000 0.00 0.00 37.82 2.43
1800 5574 7.284489 TGAAATAGTAAGGGCGCAAGAATAATT 59.716 33.333 10.83 0.00 43.02 1.40
1896 5674 6.829229 ACAAAAGCATCATTGATCTCTTGA 57.171 33.333 14.02 0.00 0.00 3.02
1941 5719 6.252281 TGTAGCTTGTTGTACAAAAAGTTCG 58.748 36.000 30.28 13.66 37.69 3.95
1952 5730 6.858993 TGTACAAAAAGTTCGTTGGCATATTC 59.141 34.615 0.00 0.00 0.00 1.75
2033 5811 7.987750 AAATAGACGCTATCTCTCTATCACA 57.012 36.000 0.80 0.00 39.04 3.58
2034 5812 7.987750 AATAGACGCTATCTCTCTATCACAA 57.012 36.000 0.80 0.00 39.04 3.33
2035 5813 7.987750 ATAGACGCTATCTCTCTATCACAAA 57.012 36.000 0.00 0.00 39.04 2.83
2036 5814 6.892658 AGACGCTATCTCTCTATCACAAAT 57.107 37.500 0.00 0.00 28.16 2.32
2037 5815 7.283625 AGACGCTATCTCTCTATCACAAATT 57.716 36.000 0.00 0.00 28.16 1.82
2038 5816 7.367285 AGACGCTATCTCTCTATCACAAATTC 58.633 38.462 0.00 0.00 28.16 2.17
2095 5873 4.080356 TGCTTGGCACTATGAGAAGGTAAT 60.080 41.667 0.00 0.00 31.71 1.89
2098 5876 5.957771 TGGCACTATGAGAAGGTAATCTT 57.042 39.130 0.00 0.00 38.65 2.40
2100 5878 6.349300 TGGCACTATGAGAAGGTAATCTTTC 58.651 40.000 0.00 0.00 35.50 2.62
2120 5898 1.202154 CGGTAAGGAGTGCGTACAGAG 60.202 57.143 6.38 0.00 0.00 3.35
2127 5905 2.478200 GGAGTGCGTACAGAGTAGCTTC 60.478 54.545 6.38 0.00 0.00 3.86
2135 5913 5.753744 CGTACAGAGTAGCTTCTAATGAGG 58.246 45.833 10.77 0.00 0.00 3.86
2158 5936 1.745232 AGATAATTCGTTGCGCCCAA 58.255 45.000 4.18 0.00 0.00 4.12
2394 6257 3.182173 CGTGTTGTTGCTTTGGCTATTTG 59.818 43.478 0.00 0.00 39.59 2.32
2395 6258 4.119136 GTGTTGTTGCTTTGGCTATTTGT 58.881 39.130 0.00 0.00 39.59 2.83
2396 6259 4.025813 GTGTTGTTGCTTTGGCTATTTGTG 60.026 41.667 0.00 0.00 39.59 3.33
2397 6260 3.383620 TGTTGCTTTGGCTATTTGTGG 57.616 42.857 0.00 0.00 39.59 4.17
2398 6261 2.068519 GTTGCTTTGGCTATTTGTGGC 58.931 47.619 0.00 0.00 39.59 5.01
2427 6295 1.829456 CATGGACCCGGCTATGTCA 59.171 57.895 10.24 0.00 33.09 3.58
2468 6336 4.563184 AGAGTAACGATGTCGCTTTGATTC 59.437 41.667 1.77 0.00 44.43 2.52
2471 6339 1.394917 ACGATGTCGCTTTGATTCTGC 59.605 47.619 1.77 0.00 44.43 4.26
2477 6345 6.183360 CGATGTCGCTTTGATTCTGCATATAT 60.183 38.462 0.00 0.00 0.00 0.86
2481 6349 7.118245 TGTCGCTTTGATTCTGCATATATTAGG 59.882 37.037 0.00 0.00 0.00 2.69
2584 6452 6.817140 GTGAGAGTTGTTTAATAGGTGGGTAG 59.183 42.308 0.00 0.00 0.00 3.18
2594 6462 1.581223 AGGTGGGTAGTTAGGAAGGC 58.419 55.000 0.00 0.00 0.00 4.35
2626 6494 5.749462 AGGAACCATCACAAAGAGATAAGG 58.251 41.667 0.00 0.00 0.00 2.69
2627 6495 4.884164 GGAACCATCACAAAGAGATAAGGG 59.116 45.833 0.00 0.00 0.00 3.95
2628 6496 5.501156 GAACCATCACAAAGAGATAAGGGT 58.499 41.667 0.00 0.00 0.00 4.34
2630 6498 5.990668 ACCATCACAAAGAGATAAGGGTAC 58.009 41.667 0.00 0.00 0.00 3.34
2645 6514 2.084681 GTACACGACTTCCCGCACG 61.085 63.158 0.00 0.00 0.00 5.34
2705 6574 4.681074 AAAGCTGGCTAGGAAGATACTC 57.319 45.455 0.00 0.00 0.00 2.59
2706 6575 2.604139 AGCTGGCTAGGAAGATACTCC 58.396 52.381 0.00 0.00 35.51 3.85
2707 6576 1.621317 GCTGGCTAGGAAGATACTCCC 59.379 57.143 0.00 0.00 35.95 4.30
2708 6577 2.758295 GCTGGCTAGGAAGATACTCCCT 60.758 54.545 0.00 0.00 35.95 4.20
2709 6578 3.582164 CTGGCTAGGAAGATACTCCCTT 58.418 50.000 0.00 0.00 35.95 3.95
2710 6579 3.970640 CTGGCTAGGAAGATACTCCCTTT 59.029 47.826 0.00 0.00 35.95 3.11
2711 6580 3.711704 TGGCTAGGAAGATACTCCCTTTG 59.288 47.826 0.00 0.00 35.95 2.77
2712 6581 3.712218 GGCTAGGAAGATACTCCCTTTGT 59.288 47.826 0.00 0.00 35.95 2.83
2713 6582 4.164413 GGCTAGGAAGATACTCCCTTTGTT 59.836 45.833 0.00 0.00 35.95 2.83
2714 6583 5.361427 GCTAGGAAGATACTCCCTTTGTTC 58.639 45.833 0.00 0.00 35.95 3.18
2715 6584 4.473477 AGGAAGATACTCCCTTTGTTCG 57.527 45.455 0.00 0.00 35.95 3.95
2716 6585 3.838903 AGGAAGATACTCCCTTTGTTCGT 59.161 43.478 0.00 0.00 35.95 3.85
2717 6586 3.933332 GGAAGATACTCCCTTTGTTCGTG 59.067 47.826 0.00 0.00 0.00 4.35
2718 6587 4.322499 GGAAGATACTCCCTTTGTTCGTGA 60.322 45.833 0.00 0.00 0.00 4.35
2719 6588 4.884668 AGATACTCCCTTTGTTCGTGAA 57.115 40.909 0.00 0.00 0.00 3.18
2720 6589 5.422214 AGATACTCCCTTTGTTCGTGAAT 57.578 39.130 0.00 0.00 0.00 2.57
2721 6590 6.540438 AGATACTCCCTTTGTTCGTGAATA 57.460 37.500 0.00 0.00 0.00 1.75
2722 6591 6.942976 AGATACTCCCTTTGTTCGTGAATAA 58.057 36.000 0.00 0.00 0.00 1.40
2723 6592 6.817140 AGATACTCCCTTTGTTCGTGAATAAC 59.183 38.462 0.00 0.00 0.00 1.89
2724 6593 4.969484 ACTCCCTTTGTTCGTGAATAACT 58.031 39.130 0.00 0.00 0.00 2.24
2725 6594 4.755123 ACTCCCTTTGTTCGTGAATAACTG 59.245 41.667 0.00 0.00 0.00 3.16
2726 6595 4.710324 TCCCTTTGTTCGTGAATAACTGT 58.290 39.130 0.00 0.00 0.00 3.55
2727 6596 5.856156 TCCCTTTGTTCGTGAATAACTGTA 58.144 37.500 0.00 0.00 0.00 2.74
2728 6597 5.697633 TCCCTTTGTTCGTGAATAACTGTAC 59.302 40.000 0.00 0.00 0.00 2.90
2729 6598 5.467399 CCCTTTGTTCGTGAATAACTGTACA 59.533 40.000 0.00 0.00 0.00 2.90
2730 6599 6.148811 CCCTTTGTTCGTGAATAACTGTACAT 59.851 38.462 0.00 0.00 0.00 2.29
2731 6600 7.234384 CCTTTGTTCGTGAATAACTGTACATC 58.766 38.462 0.00 0.00 0.00 3.06
2732 6601 7.117812 CCTTTGTTCGTGAATAACTGTACATCT 59.882 37.037 0.00 0.00 0.00 2.90
2733 6602 9.135843 CTTTGTTCGTGAATAACTGTACATCTA 57.864 33.333 0.00 0.00 0.00 1.98
2734 6603 8.683550 TTGTTCGTGAATAACTGTACATCTAG 57.316 34.615 0.00 0.00 0.00 2.43
2735 6604 6.750501 TGTTCGTGAATAACTGTACATCTAGC 59.249 38.462 0.00 0.00 0.00 3.42
2736 6605 6.694877 TCGTGAATAACTGTACATCTAGCT 57.305 37.500 0.00 0.00 0.00 3.32
2737 6606 7.096884 TCGTGAATAACTGTACATCTAGCTT 57.903 36.000 0.00 0.00 0.00 3.74
2738 6607 7.544622 TCGTGAATAACTGTACATCTAGCTTT 58.455 34.615 0.00 0.00 0.00 3.51
2739 6608 8.033038 TCGTGAATAACTGTACATCTAGCTTTT 58.967 33.333 0.00 0.00 0.00 2.27
2740 6609 8.110612 CGTGAATAACTGTACATCTAGCTTTTG 58.889 37.037 0.00 0.00 0.00 2.44
2741 6610 8.936864 GTGAATAACTGTACATCTAGCTTTTGT 58.063 33.333 0.00 0.00 0.00 2.83
2742 6611 9.151471 TGAATAACTGTACATCTAGCTTTTGTC 57.849 33.333 0.00 0.00 0.00 3.18
2743 6612 9.372369 GAATAACTGTACATCTAGCTTTTGTCT 57.628 33.333 0.00 0.00 0.00 3.41
2744 6613 9.726438 AATAACTGTACATCTAGCTTTTGTCTT 57.274 29.630 0.00 0.00 0.00 3.01
2747 6616 8.764524 ACTGTACATCTAGCTTTTGTCTTAAG 57.235 34.615 0.00 0.00 0.00 1.85
2748 6617 8.368668 ACTGTACATCTAGCTTTTGTCTTAAGT 58.631 33.333 1.63 0.00 0.00 2.24
2749 6618 9.209175 CTGTACATCTAGCTTTTGTCTTAAGTT 57.791 33.333 1.63 0.00 0.00 2.66
2803 6672 8.305046 AGGAATAAGTAAAAGCATTTATGGCA 57.695 30.769 0.00 0.00 37.28 4.92
2804 6673 8.197439 AGGAATAAGTAAAAGCATTTATGGCAC 58.803 33.333 0.00 0.00 37.28 5.01
2805 6674 7.438160 GGAATAAGTAAAAGCATTTATGGCACC 59.562 37.037 0.00 0.00 37.28 5.01
2806 6675 5.736951 AAGTAAAAGCATTTATGGCACCA 57.263 34.783 0.00 0.00 37.28 4.17
2807 6676 5.736951 AGTAAAAGCATTTATGGCACCAA 57.263 34.783 0.00 0.00 37.28 3.67
2808 6677 6.107901 AGTAAAAGCATTTATGGCACCAAA 57.892 33.333 0.00 0.00 37.28 3.28
2809 6678 6.710278 AGTAAAAGCATTTATGGCACCAAAT 58.290 32.000 0.00 0.00 37.28 2.32
2810 6679 7.167535 AGTAAAAGCATTTATGGCACCAAATT 58.832 30.769 6.24 0.00 37.28 1.82
2811 6680 8.317679 AGTAAAAGCATTTATGGCACCAAATTA 58.682 29.630 6.24 0.00 37.28 1.40
2812 6681 7.614124 AAAAGCATTTATGGCACCAAATTAG 57.386 32.000 6.24 0.00 37.28 1.73
2813 6682 5.937975 AGCATTTATGGCACCAAATTAGT 57.062 34.783 6.24 0.00 0.00 2.24
2814 6683 7.416964 AAGCATTTATGGCACCAAATTAGTA 57.583 32.000 6.24 0.00 0.00 1.82
2815 6684 7.601705 AGCATTTATGGCACCAAATTAGTAT 57.398 32.000 6.24 0.00 0.00 2.12
2816 6685 8.021898 AGCATTTATGGCACCAAATTAGTATT 57.978 30.769 6.24 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.518636 CTGGCACCACAGACATTTCG 59.481 55.000 0.00 0.00 40.97 3.46
7 8 1.609208 ACTGGCACCACAGACATTTC 58.391 50.000 0.00 0.00 40.97 2.17
15 16 0.480690 ACCCAAATACTGGCACCACA 59.519 50.000 0.00 0.00 44.90 4.17
20 21 1.959508 GCATCCACCCAAATACTGGCA 60.960 52.381 0.00 0.00 44.90 4.92
21 22 0.746659 GCATCCACCCAAATACTGGC 59.253 55.000 0.00 0.00 44.90 4.85
25 26 1.134946 GCACTGCATCCACCCAAATAC 59.865 52.381 0.00 0.00 0.00 1.89
60 63 4.526970 GAGCCTTCATATTTGAGGTTGGA 58.473 43.478 0.00 0.00 32.27 3.53
117 120 0.898320 TGGCTGAAGACCACTCTAGC 59.102 55.000 0.00 0.00 35.62 3.42
125 128 7.702348 GTGTTATATTGATTTTGGCTGAAGACC 59.298 37.037 0.00 0.00 0.00 3.85
143 147 7.734865 TGATCTCCATAGGAACTGGTGTTATAT 59.265 37.037 0.00 0.00 41.52 0.86
151 155 2.636893 CCCTGATCTCCATAGGAACTGG 59.363 54.545 0.00 0.00 41.52 4.00
154 158 3.309296 TCACCCTGATCTCCATAGGAAC 58.691 50.000 0.00 0.00 33.33 3.62
157 161 5.128499 GTCATATCACCCTGATCTCCATAGG 59.872 48.000 0.00 0.00 38.26 2.57
168 172 2.544694 GCAGACTCGTCATATCACCCTG 60.545 54.545 0.00 0.00 0.00 4.45
173 177 0.668535 CCGGCAGACTCGTCATATCA 59.331 55.000 0.00 0.00 0.00 2.15
190 194 1.134965 CACCCTCTTAGAGCAACTCCG 60.135 57.143 3.26 0.00 0.00 4.63
191 195 1.208293 CCACCCTCTTAGAGCAACTCC 59.792 57.143 3.26 0.00 0.00 3.85
232 236 5.506730 TCACACATAATGGAGGGTTGTAA 57.493 39.130 0.00 0.00 0.00 2.41
237 241 3.976654 AGCTATCACACATAATGGAGGGT 59.023 43.478 0.00 0.00 0.00 4.34
638 643 2.119495 CTAACCAGGGTGGAGCTACAT 58.881 52.381 0.00 0.00 40.96 2.29
757 1892 2.575532 TGTATTGCTGATAAGGCCTGC 58.424 47.619 5.69 5.31 0.00 4.85
1014 2180 3.464907 AGTAGTACGATCGCTTGAGCTA 58.535 45.455 16.60 5.98 39.32 3.32
1199 2417 0.537828 CCCTAGGGTCCTCGTCTAGC 60.538 65.000 20.88 0.00 31.66 3.42
1276 2494 4.321966 TGCCGCCGATGAACACCA 62.322 61.111 0.00 0.00 0.00 4.17
1416 2701 6.605471 ATTATATATTCTCCCGTGTCAGCA 57.395 37.500 0.00 0.00 0.00 4.41
1460 4356 6.307077 CGTGATACAAGATAACAGAAACACGA 59.693 38.462 0.00 0.00 45.29 4.35
1567 4518 2.013400 ACATGTCGTTGTTGTCTGCAA 58.987 42.857 0.00 0.00 0.00 4.08
1580 4531 9.355215 ACAAAGAGAGTACTATTTTACATGTCG 57.645 33.333 0.00 0.00 35.72 4.35
1627 4578 7.968956 CGTATGTAGTCACTTGTTAGAATGTCT 59.031 37.037 0.00 0.00 0.00 3.41
1628 4579 7.966753 TCGTATGTAGTCACTTGTTAGAATGTC 59.033 37.037 0.00 0.00 0.00 3.06
1629 4580 7.823665 TCGTATGTAGTCACTTGTTAGAATGT 58.176 34.615 0.00 0.00 0.00 2.71
1630 4581 8.683550 TTCGTATGTAGTCACTTGTTAGAATG 57.316 34.615 0.00 0.00 0.00 2.67
1631 4582 7.488471 GCTTCGTATGTAGTCACTTGTTAGAAT 59.512 37.037 0.00 0.00 0.00 2.40
1632 4583 6.805271 GCTTCGTATGTAGTCACTTGTTAGAA 59.195 38.462 0.00 0.00 0.00 2.10
1633 4584 6.072342 TGCTTCGTATGTAGTCACTTGTTAGA 60.072 38.462 0.00 0.00 0.00 2.10
1634 4585 6.090783 TGCTTCGTATGTAGTCACTTGTTAG 58.909 40.000 0.00 0.00 0.00 2.34
1635 4586 6.016213 TGCTTCGTATGTAGTCACTTGTTA 57.984 37.500 0.00 0.00 0.00 2.41
1636 4587 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
1637 4588 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
1638 4589 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
1639 4590 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
1640 4591 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
1641 4592 6.403333 TCATTTTGCTTCGTATGTAGTCAC 57.597 37.500 0.00 0.00 0.00 3.67
1642 4593 7.333174 TCATTCATTTTGCTTCGTATGTAGTCA 59.667 33.333 0.00 0.00 0.00 3.41
1643 4594 7.684670 TCATTCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
1644 4595 7.609760 TCATTCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
1645 4596 9.162793 GATTCATTCATTTTGCTTCGTATGTAG 57.837 33.333 0.00 0.00 0.00 2.74
1646 4597 8.892723 AGATTCATTCATTTTGCTTCGTATGTA 58.107 29.630 0.00 0.00 0.00 2.29
1647 4598 7.765307 AGATTCATTCATTTTGCTTCGTATGT 58.235 30.769 0.00 0.00 0.00 2.29
1648 4599 9.888878 ATAGATTCATTCATTTTGCTTCGTATG 57.111 29.630 0.00 0.00 0.00 2.39
1651 4602 9.113838 AGTATAGATTCATTCATTTTGCTTCGT 57.886 29.630 0.00 0.00 0.00 3.85
1652 4603 9.378597 CAGTATAGATTCATTCATTTTGCTTCG 57.621 33.333 0.00 0.00 0.00 3.79
1739 4690 8.082852 GCATGATACTCTCTCCGTTTCTAAATA 58.917 37.037 0.00 0.00 0.00 1.40
1740 4691 6.926272 GCATGATACTCTCTCCGTTTCTAAAT 59.074 38.462 0.00 0.00 0.00 1.40
1741 4692 6.127451 TGCATGATACTCTCTCCGTTTCTAAA 60.127 38.462 0.00 0.00 0.00 1.85
1742 4693 5.359860 TGCATGATACTCTCTCCGTTTCTAA 59.640 40.000 0.00 0.00 0.00 2.10
1743 4694 4.887655 TGCATGATACTCTCTCCGTTTCTA 59.112 41.667 0.00 0.00 0.00 2.10
1744 4695 3.701542 TGCATGATACTCTCTCCGTTTCT 59.298 43.478 0.00 0.00 0.00 2.52
1745 4696 4.046938 TGCATGATACTCTCTCCGTTTC 57.953 45.455 0.00 0.00 0.00 2.78
1746 4697 4.471904 TTGCATGATACTCTCTCCGTTT 57.528 40.909 0.00 0.00 0.00 3.60
1747 4698 4.081420 ACTTTGCATGATACTCTCTCCGTT 60.081 41.667 0.00 0.00 0.00 4.44
1748 4699 3.449018 ACTTTGCATGATACTCTCTCCGT 59.551 43.478 0.00 0.00 0.00 4.69
1749 4700 4.052159 ACTTTGCATGATACTCTCTCCG 57.948 45.455 0.00 0.00 0.00 4.63
1750 4701 6.749923 AAAACTTTGCATGATACTCTCTCC 57.250 37.500 0.00 0.00 0.00 3.71
1751 4702 7.810658 TCAAAAACTTTGCATGATACTCTCTC 58.189 34.615 0.00 0.00 0.00 3.20
1752 4703 7.750229 TCAAAAACTTTGCATGATACTCTCT 57.250 32.000 0.00 0.00 0.00 3.10
1753 4704 8.801715 TTTCAAAAACTTTGCATGATACTCTC 57.198 30.769 0.00 0.00 0.00 3.20
1773 5129 3.945346 TCTTGCGCCCTTACTATTTCAA 58.055 40.909 4.18 0.00 0.00 2.69
1800 5574 4.666512 AGGTACGACAGGACCTAAGTTTA 58.333 43.478 0.00 0.00 44.51 2.01
2028 5806 7.669722 AGTTGGTACCTATTGTGAATTTGTGAT 59.330 33.333 14.36 0.00 0.00 3.06
2030 5808 7.214467 AGTTGGTACCTATTGTGAATTTGTG 57.786 36.000 14.36 0.00 0.00 3.33
2031 5809 7.255801 CCAAGTTGGTACCTATTGTGAATTTGT 60.256 37.037 14.21 0.00 31.35 2.83
2032 5810 7.090173 CCAAGTTGGTACCTATTGTGAATTTG 58.910 38.462 14.21 9.77 31.35 2.32
2033 5811 7.227049 CCAAGTTGGTACCTATTGTGAATTT 57.773 36.000 14.21 0.00 31.35 1.82
2034 5812 6.834168 CCAAGTTGGTACCTATTGTGAATT 57.166 37.500 14.21 0.00 31.35 2.17
2067 5845 4.486125 TCTCATAGTGCCAAGCAATACA 57.514 40.909 0.00 0.00 41.73 2.29
2068 5846 4.274459 CCTTCTCATAGTGCCAAGCAATAC 59.726 45.833 0.00 0.00 41.73 1.89
2095 5873 0.963962 ACGCACTCCTTACCGAAAGA 59.036 50.000 0.00 0.00 37.38 2.52
2098 5876 1.200716 CTGTACGCACTCCTTACCGAA 59.799 52.381 0.00 0.00 0.00 4.30
2100 5878 0.806868 TCTGTACGCACTCCTTACCG 59.193 55.000 0.00 0.00 0.00 4.02
2127 5905 7.061210 CGCAACGAATTATCTAGTCCTCATTAG 59.939 40.741 0.00 0.00 0.00 1.73
2135 5913 2.475487 GGGCGCAACGAATTATCTAGTC 59.525 50.000 10.83 0.00 0.00 2.59
2146 5924 2.970324 GTGTCTTGGGCGCAACGA 60.970 61.111 12.81 11.23 0.00 3.85
2158 5936 2.415893 GCCGCATTTGCTTATTGTGTCT 60.416 45.455 0.51 0.00 39.32 3.41
2237 6100 2.947127 AGAATCCCAGCCAGATTAGC 57.053 50.000 0.00 0.00 34.12 3.09
2376 6239 3.726607 CCACAAATAGCCAAAGCAACAA 58.273 40.909 0.00 0.00 43.56 2.83
2427 6295 4.134563 ACTCTGGACAACGCTTTACAAAT 58.865 39.130 0.00 0.00 0.00 2.32
2566 6434 7.811482 TCCTAACTACCCACCTATTAAACAA 57.189 36.000 0.00 0.00 0.00 2.83
2584 6452 0.539986 TCCCATGACGCCTTCCTAAC 59.460 55.000 0.00 0.00 0.00 2.34
2594 6462 0.541392 TGATGGTTCCTCCCATGACG 59.459 55.000 0.00 0.00 45.31 4.35
2616 6484 4.401837 GGAAGTCGTGTACCCTTATCTCTT 59.598 45.833 0.00 0.00 0.00 2.85
2626 6494 1.735559 GTGCGGGAAGTCGTGTACC 60.736 63.158 0.00 0.00 0.00 3.34
2627 6495 2.084681 CGTGCGGGAAGTCGTGTAC 61.085 63.158 0.00 0.00 0.00 2.90
2628 6496 2.256158 CGTGCGGGAAGTCGTGTA 59.744 61.111 0.00 0.00 0.00 2.90
2653 6522 2.291365 TCGGTTGTAGTATGCTCGCTA 58.709 47.619 0.00 0.00 0.00 4.26
2705 6574 5.467399 TGTACAGTTATTCACGAACAAAGGG 59.533 40.000 0.00 0.00 0.00 3.95
2706 6575 6.533819 TGTACAGTTATTCACGAACAAAGG 57.466 37.500 0.00 0.00 0.00 3.11
2707 6576 8.018677 AGATGTACAGTTATTCACGAACAAAG 57.981 34.615 0.33 0.00 0.00 2.77
2708 6577 7.956420 AGATGTACAGTTATTCACGAACAAA 57.044 32.000 0.33 0.00 0.00 2.83
2709 6578 7.274904 GCTAGATGTACAGTTATTCACGAACAA 59.725 37.037 0.33 0.00 0.00 2.83
2710 6579 6.750501 GCTAGATGTACAGTTATTCACGAACA 59.249 38.462 0.33 0.00 0.00 3.18
2711 6580 6.973474 AGCTAGATGTACAGTTATTCACGAAC 59.027 38.462 0.33 0.00 0.00 3.95
2712 6581 7.096884 AGCTAGATGTACAGTTATTCACGAA 57.903 36.000 0.33 0.00 0.00 3.85
2713 6582 6.694877 AGCTAGATGTACAGTTATTCACGA 57.305 37.500 0.33 0.00 0.00 4.35
2714 6583 7.757097 AAAGCTAGATGTACAGTTATTCACG 57.243 36.000 0.33 0.00 0.00 4.35
2715 6584 8.936864 ACAAAAGCTAGATGTACAGTTATTCAC 58.063 33.333 0.33 0.00 0.00 3.18
2716 6585 9.151471 GACAAAAGCTAGATGTACAGTTATTCA 57.849 33.333 0.33 0.00 0.00 2.57
2717 6586 9.372369 AGACAAAAGCTAGATGTACAGTTATTC 57.628 33.333 0.33 0.00 0.00 1.75
2718 6587 9.726438 AAGACAAAAGCTAGATGTACAGTTATT 57.274 29.630 0.33 0.00 0.00 1.40
2721 6590 9.209175 CTTAAGACAAAAGCTAGATGTACAGTT 57.791 33.333 0.33 0.00 0.00 3.16
2722 6591 8.368668 ACTTAAGACAAAAGCTAGATGTACAGT 58.631 33.333 10.09 0.00 0.00 3.55
2723 6592 8.764524 ACTTAAGACAAAAGCTAGATGTACAG 57.235 34.615 10.09 0.00 0.00 2.74
2777 6646 9.415008 TGCCATAAATGCTTTTACTTATTCCTA 57.585 29.630 6.92 0.00 30.33 2.94
2778 6647 8.197439 GTGCCATAAATGCTTTTACTTATTCCT 58.803 33.333 6.92 0.00 30.33 3.36
2779 6648 7.438160 GGTGCCATAAATGCTTTTACTTATTCC 59.562 37.037 6.92 3.64 30.33 3.01
2780 6649 7.978975 TGGTGCCATAAATGCTTTTACTTATTC 59.021 33.333 6.92 0.00 30.33 1.75
2781 6650 7.846066 TGGTGCCATAAATGCTTTTACTTATT 58.154 30.769 6.92 0.00 30.33 1.40
2782 6651 7.416964 TGGTGCCATAAATGCTTTTACTTAT 57.583 32.000 6.92 0.00 30.33 1.73
2783 6652 6.842437 TGGTGCCATAAATGCTTTTACTTA 57.158 33.333 6.92 0.00 30.33 2.24
2784 6653 5.736951 TGGTGCCATAAATGCTTTTACTT 57.263 34.783 6.92 0.00 30.33 2.24
2785 6654 5.736951 TTGGTGCCATAAATGCTTTTACT 57.263 34.783 6.92 0.00 30.33 2.24
2786 6655 6.983474 ATTTGGTGCCATAAATGCTTTTAC 57.017 33.333 6.92 0.00 30.33 2.01
2787 6656 8.317679 ACTAATTTGGTGCCATAAATGCTTTTA 58.682 29.630 7.20 7.20 0.00 1.52
2788 6657 7.167535 ACTAATTTGGTGCCATAAATGCTTTT 58.832 30.769 2.86 2.86 0.00 2.27
2789 6658 6.710278 ACTAATTTGGTGCCATAAATGCTTT 58.290 32.000 0.00 0.00 0.00 3.51
2790 6659 6.298441 ACTAATTTGGTGCCATAAATGCTT 57.702 33.333 0.00 0.00 0.00 3.91
2791 6660 5.937975 ACTAATTTGGTGCCATAAATGCT 57.062 34.783 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.