Multiple sequence alignment - TraesCS5A01G043800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G043800 chr5A 100.000 6182 0 0 1 6182 40168630 40162449 0.000000e+00 11417.0
1 TraesCS5A01G043800 chr5B 89.845 2068 145 29 1 2036 53792035 53794069 0.000000e+00 2595.0
2 TraesCS5A01G043800 chr5B 93.923 724 44 0 4479 5202 53797050 53797773 0.000000e+00 1094.0
3 TraesCS5A01G043800 chr5B 89.720 856 62 13 4479 5325 54156859 54157697 0.000000e+00 1070.0
4 TraesCS5A01G043800 chr5B 86.246 618 36 24 3530 4131 53795870 53796454 5.260000e-175 625.0
5 TraesCS5A01G043800 chr5B 85.904 603 48 19 3549 4134 54155710 54156292 5.300000e-170 608.0
6 TraesCS5A01G043800 chr5B 78.125 832 77 50 2589 3374 53794746 53795518 1.230000e-116 431.0
7 TraesCS5A01G043800 chr5B 92.623 244 14 3 1795 2036 54117272 54117513 1.280000e-91 348.0
8 TraesCS5A01G043800 chr5B 92.083 240 11 6 5241 5478 53797781 53798014 1.280000e-86 331.0
9 TraesCS5A01G043800 chr5B 96.479 142 4 1 5318 5459 54157877 54158017 3.730000e-57 233.0
10 TraesCS5A01G043800 chr5B 82.564 195 12 8 2218 2391 53794316 53794509 1.070000e-32 152.0
11 TraesCS5A01G043800 chr5B 89.474 114 7 2 2613 2725 54120395 54120504 8.360000e-29 139.0
12 TraesCS5A01G043800 chr5B 83.453 139 9 10 2451 2587 54120198 54120324 3.920000e-22 117.0
13 TraesCS5A01G043800 chr5B 89.286 84 7 2 2286 2369 54118219 54118300 3.050000e-18 104.0
14 TraesCS5A01G043800 chr5B 98.077 52 1 0 2218 2269 54117668 54117719 2.370000e-14 91.6
15 TraesCS5A01G043800 chr5B 98.000 50 1 0 2523 2572 53794657 53794706 3.070000e-13 87.9
16 TraesCS5A01G043800 chr5B 100.000 29 0 0 2261 2289 54118174 54118202 3.000000e-03 54.7
17 TraesCS5A01G043800 chr5D 89.174 2106 90 58 3530 5549 50922659 50924712 0.000000e+00 2499.0
18 TraesCS5A01G043800 chr5D 93.061 1542 71 17 560 2089 50919620 50921137 0.000000e+00 2222.0
19 TraesCS5A01G043800 chr5D 88.870 575 60 3 1 572 50878094 50878667 0.000000e+00 704.0
20 TraesCS5A01G043800 chr5D 81.543 661 60 24 5555 6182 50925631 50926262 7.200000e-134 488.0
21 TraesCS5A01G043800 chr5D 92.386 197 1 1 2526 2708 50921636 50921832 1.020000e-67 268.0
22 TraesCS5A01G043800 chr5D 79.151 259 5 17 2977 3235 50922067 50922276 3.890000e-27 134.0
23 TraesCS5A01G043800 chr5D 91.892 74 3 1 2210 2283 50921232 50921302 3.940000e-17 100.0
24 TraesCS5A01G043800 chr5D 79.464 112 14 8 2801 2907 50921870 50921977 3.090000e-08 71.3
25 TraesCS5A01G043800 chr4D 82.804 378 55 6 1238 1613 55367398 55367767 4.620000e-86 329.0
26 TraesCS5A01G043800 chr3A 100.000 31 0 0 587 617 644917908 644917878 2.410000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G043800 chr5A 40162449 40168630 6181 True 11417.000000 11417 100.000000 1 6182 1 chr5A.!!$R1 6181
1 TraesCS5A01G043800 chr5B 53792035 53798014 5979 False 759.414286 2595 88.683714 1 5478 7 chr5B.!!$F1 5477
2 TraesCS5A01G043800 chr5B 54155710 54158017 2307 False 637.000000 1070 90.701000 3549 5459 3 chr5B.!!$F3 1910
3 TraesCS5A01G043800 chr5D 50919620 50926262 6642 False 826.042857 2499 86.667286 560 6182 7 chr5D.!!$F2 5622
4 TraesCS5A01G043800 chr5D 50878094 50878667 573 False 704.000000 704 88.870000 1 572 1 chr5D.!!$F1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1027 0.108585 TCACACTCTTTGGCAGTCCC 59.891 55.0 0.00 0.00 0.00 4.46 F
1042 1095 0.034960 GAAACCAAGGCCTCTCCTCC 60.035 60.0 5.23 0.00 46.94 4.30 F
2124 2216 0.036388 TCATGGCAAACTCCTCCGTC 60.036 55.0 0.00 0.00 0.00 4.79 F
2742 3056 0.106619 ACTAGCTACTCCGGTCCTGG 60.107 60.0 0.00 0.00 0.00 4.45 F
2781 3095 0.110295 CACATCCCACAGACCCACAA 59.890 55.0 0.00 0.00 0.00 3.33 F
3472 3911 0.179225 CCAAACGCGTCAAGAATCGG 60.179 55.0 14.44 0.21 0.00 4.18 F
3547 4186 0.325860 TAGCACCCTGGTAACCGGAT 60.326 55.0 9.46 0.00 29.82 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2861 3192 0.035317 TCCATTTGCTCTGCTCGTGT 59.965 50.000 0.00 0.0 0.00 4.49 R
2925 3268 0.459899 CCGCTCATGTACAGCCACTA 59.540 55.000 0.33 0.0 32.83 2.74 R
3248 3642 0.105760 ATTGGTTGGAGGTGGTTGCA 60.106 50.000 0.00 0.0 0.00 4.08 R
4066 4740 0.603439 GTGTTTTTGGGCCAGCCATG 60.603 55.000 6.23 0.0 37.98 3.66 R
4477 5432 1.068333 CACCACAGCTGCAACATTACC 60.068 52.381 15.27 0.0 0.00 2.85 R
4923 5898 0.248825 CGAGCTCCGACTGGATGAAG 60.249 60.000 8.47 0.0 45.33 3.02 R
5253 6238 1.078143 AAGAATCAGGCAGGCGTCC 60.078 57.895 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.869767 CACAACGAGCAGCTTCTTCTT 59.130 47.619 0.00 0.00 0.00 2.52
23 24 2.096516 CACAACGAGCAGCTTCTTCTTC 60.097 50.000 0.00 0.00 0.00 2.87
29 30 0.926846 GCAGCTTCTTCTTCGGATCG 59.073 55.000 0.00 0.00 0.00 3.69
83 84 2.073252 TCCTATGACATCTCCGCAGT 57.927 50.000 0.00 0.00 0.00 4.40
85 86 1.683385 CCTATGACATCTCCGCAGTCA 59.317 52.381 0.00 0.00 45.26 3.41
147 148 5.647589 CAACCTTACAGAGTTGTAGCGATA 58.352 41.667 0.00 0.00 40.68 2.92
190 191 2.278857 CGATTCTGACGGCCTCGG 60.279 66.667 0.00 2.73 41.39 4.63
205 206 0.467384 CTCGGCTCCATGGAATCTGT 59.533 55.000 17.00 0.00 0.00 3.41
239 240 1.971167 GACTGCGGGTTGGCATTGA 60.971 57.895 0.00 0.00 42.99 2.57
258 259 2.746277 GGTTGATTCCGCCAGCGT 60.746 61.111 11.55 0.00 37.81 5.07
273 274 2.944429 CGTGGAGTCGACGACACT 59.056 61.111 29.50 10.14 39.21 3.55
278 279 1.270465 TGGAGTCGACGACACTGACTA 60.270 52.381 28.31 10.11 42.71 2.59
289 290 2.148768 ACACTGACTATGACGACGACA 58.851 47.619 0.00 0.88 0.00 4.35
291 292 2.159824 CACTGACTATGACGACGACAGT 59.840 50.000 0.00 0.00 37.56 3.55
298 299 1.105167 TGACGACGACAGTGAGGGTT 61.105 55.000 0.00 0.00 0.00 4.11
303 304 1.068741 GACGACAGTGAGGGTTGAGTT 59.931 52.381 0.00 0.00 0.00 3.01
345 346 2.688507 CGGCCGAGCAAATATACTCAT 58.311 47.619 24.07 0.00 32.98 2.90
347 348 3.615110 CGGCCGAGCAAATATACTCATCT 60.615 47.826 24.07 0.00 32.98 2.90
355 356 1.644509 ATATACTCATCTGCCCCGCA 58.355 50.000 0.00 0.00 36.92 5.69
359 360 3.839353 CTCATCTGCCCCGCATCCC 62.839 68.421 0.00 0.00 38.13 3.85
372 373 2.097466 CCGCATCCCGATTATATTTGGC 59.903 50.000 0.00 0.00 40.02 4.52
378 379 3.392947 TCCCGATTATATTTGGCTGGTGA 59.607 43.478 0.00 0.00 0.00 4.02
396 397 1.098869 GAGGCTGCTTTTTAGGGAGC 58.901 55.000 0.00 0.00 45.25 4.70
402 403 3.552068 GCTGCTTTTTAGGGAGCGAAAAA 60.552 43.478 0.00 0.00 41.75 1.94
561 565 9.921637 CATCTACTCCCTCTATCAAAATCTAAC 57.078 37.037 0.00 0.00 0.00 2.34
569 573 7.182761 CCTCTATCAAAATCTAACACGCTTTG 58.817 38.462 0.00 0.00 0.00 2.77
570 574 7.064609 CCTCTATCAAAATCTAACACGCTTTGA 59.935 37.037 0.00 0.00 39.56 2.69
571 575 8.492673 TCTATCAAAATCTAACACGCTTTGAT 57.507 30.769 11.71 11.71 44.63 2.57
572 576 9.594478 TCTATCAAAATCTAACACGCTTTGATA 57.406 29.630 12.49 12.49 42.18 2.15
578 615 8.673626 AAATCTAACACGCTTTGATACAAATG 57.326 30.769 0.00 0.00 0.00 2.32
695 732 6.027749 GCATGCATACAGTAAGTTTGGTAAC 58.972 40.000 14.21 0.00 30.85 2.50
696 733 6.128007 GCATGCATACAGTAAGTTTGGTAACT 60.128 38.462 14.21 0.00 46.44 2.24
698 735 7.894376 TGCATACAGTAAGTTTGGTAACTAC 57.106 36.000 0.00 0.00 43.74 2.73
699 736 7.673180 TGCATACAGTAAGTTTGGTAACTACT 58.327 34.615 0.00 0.00 43.74 2.57
700 737 7.816031 TGCATACAGTAAGTTTGGTAACTACTC 59.184 37.037 0.00 0.00 43.74 2.59
757 794 5.423704 AATCAATCAATGGCCAACAATGA 57.576 34.783 10.96 12.95 42.80 2.57
889 929 1.305623 CAGCCAGCTCCCTCCAAAT 59.694 57.895 0.00 0.00 0.00 2.32
892 935 0.255890 GCCAGCTCCCTCCAAATACA 59.744 55.000 0.00 0.00 0.00 2.29
947 993 3.495670 CTAGCCATACTAGCGTCCATC 57.504 52.381 0.00 0.00 41.99 3.51
964 1017 2.830923 CCATCCTCAGTCTCACACTCTT 59.169 50.000 0.00 0.00 30.26 2.85
969 1022 1.762370 TCAGTCTCACACTCTTTGGCA 59.238 47.619 0.00 0.00 30.26 4.92
971 1024 1.765314 AGTCTCACACTCTTTGGCAGT 59.235 47.619 0.00 0.00 0.00 4.40
973 1026 1.070758 TCTCACACTCTTTGGCAGTCC 59.929 52.381 0.00 0.00 0.00 3.85
974 1027 0.108585 TCACACTCTTTGGCAGTCCC 59.891 55.000 0.00 0.00 0.00 4.46
1042 1095 0.034960 GAAACCAAGGCCTCTCCTCC 60.035 60.000 5.23 0.00 46.94 4.30
1043 1096 0.476611 AAACCAAGGCCTCTCCTCCT 60.477 55.000 5.23 0.00 46.94 3.69
1044 1097 0.912006 AACCAAGGCCTCTCCTCCTC 60.912 60.000 5.23 0.00 46.94 3.71
1045 1098 2.069430 CCAAGGCCTCTCCTCCTCC 61.069 68.421 5.23 0.00 46.94 4.30
1046 1099 1.002792 CAAGGCCTCTCCTCCTCCT 59.997 63.158 5.23 0.00 46.94 3.69
1047 1100 1.048160 CAAGGCCTCTCCTCCTCCTC 61.048 65.000 5.23 0.00 46.94 3.71
1048 1101 2.123033 GGCCTCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
1194 1247 4.767255 CCGGAGCTGTGCCTGTCC 62.767 72.222 0.00 0.00 0.00 4.02
1311 1364 1.296715 CAACTGCTCCGCCTACCTT 59.703 57.895 0.00 0.00 0.00 3.50
1315 1368 1.888436 CTGCTCCGCCTACCTTCACA 61.888 60.000 0.00 0.00 0.00 3.58
1329 1382 1.185618 TTCACAGGAGGTCCCTCACG 61.186 60.000 15.01 7.54 45.60 4.35
1662 1715 1.286880 GTCGACGGAGGAAACGGAA 59.713 57.895 0.00 0.00 35.23 4.30
1670 1723 2.172659 GGAAACGGAAAGCGTCGC 59.827 61.111 9.80 9.80 0.00 5.19
1671 1724 2.202008 GAAACGGAAAGCGTCGCG 60.202 61.111 12.30 0.00 0.00 5.87
1672 1725 3.624831 GAAACGGAAAGCGTCGCGG 62.625 63.158 12.30 2.82 0.00 6.46
1716 1769 4.722700 CAGGTGGTGAAGGGCGGG 62.723 72.222 0.00 0.00 0.00 6.13
2041 2094 3.967886 ACAGTCGGTGAGTGAAGTG 57.032 52.632 8.54 0.00 36.58 3.16
2056 2110 2.749076 TGAAGTGATACTGCATTGCACC 59.251 45.455 7.38 0.00 33.79 5.01
2118 2210 1.816074 TACCGTTCATGGCAAACTCC 58.184 50.000 0.00 0.00 0.00 3.85
2124 2216 0.036388 TCATGGCAAACTCCTCCGTC 60.036 55.000 0.00 0.00 0.00 4.79
2125 2217 1.026718 CATGGCAAACTCCTCCGTCC 61.027 60.000 0.00 0.00 0.00 4.79
2133 2225 2.034532 TCCTCCGTCCGTGCACTA 59.965 61.111 16.19 0.00 0.00 2.74
2140 2232 1.810532 GTCCGTGCACTAGCTAGCT 59.189 57.895 23.12 23.12 42.74 3.32
2141 2233 1.022735 GTCCGTGCACTAGCTAGCTA 58.977 55.000 22.85 22.85 42.74 3.32
2155 2247 3.059634 CTAGCTAGCAGAGACGTTGTC 57.940 52.381 18.83 0.00 0.00 3.18
2156 2248 1.248486 AGCTAGCAGAGACGTTGTCA 58.752 50.000 18.83 0.00 34.60 3.58
2159 2251 2.857618 CTAGCAGAGACGTTGTCAGTC 58.142 52.381 0.00 0.00 38.81 3.51
2174 2269 5.188327 TGTCAGTCTGATCGATCCATTAC 57.812 43.478 22.31 14.03 0.00 1.89
2178 2273 5.772169 TCAGTCTGATCGATCCATTACTCAT 59.228 40.000 22.31 0.00 0.00 2.90
2179 2274 6.942576 TCAGTCTGATCGATCCATTACTCATA 59.057 38.462 22.31 0.00 0.00 2.15
2186 2281 1.724545 TCCATTACTCATACCCGGGG 58.275 55.000 27.92 12.73 0.00 5.73
2206 2308 1.154599 GCGTGTCAAGTCATGCGTG 60.155 57.895 0.00 0.00 39.87 5.34
2294 2470 3.233507 GGTCCGGTCCTGTATAATGGTA 58.766 50.000 10.82 0.00 0.00 3.25
2321 2497 1.980844 CGAACGCATACACTGTTACGT 59.019 47.619 0.00 0.00 34.85 3.57
2324 2549 2.746269 ACGCATACACTGTTACGTGTT 58.254 42.857 15.30 4.69 45.27 3.32
2329 2554 4.210537 GCATACACTGTTACGTGTTTGTCT 59.789 41.667 20.68 3.64 45.27 3.41
2345 2570 4.330944 TTGTCTATAATGGCGTTCCGAT 57.669 40.909 0.00 0.00 34.14 4.18
2369 2598 4.380023 CGATCGAATGGGTTGGCTTTTAAA 60.380 41.667 10.26 0.00 0.00 1.52
2391 2624 2.813754 CTGAGATCCGGTGAGAGAGATC 59.186 54.545 0.00 0.00 36.25 2.75
2392 2625 2.441375 TGAGATCCGGTGAGAGAGATCT 59.559 50.000 0.00 0.00 46.22 2.75
2393 2626 2.813754 GAGATCCGGTGAGAGAGATCTG 59.186 54.545 0.00 0.00 44.18 2.90
2394 2627 1.269448 GATCCGGTGAGAGAGATCTGC 59.731 57.143 0.00 0.00 33.79 4.26
2395 2628 0.753479 TCCGGTGAGAGAGATCTGCC 60.753 60.000 0.00 0.00 0.00 4.85
2396 2629 0.754957 CCGGTGAGAGAGATCTGCCT 60.755 60.000 0.00 0.00 0.00 4.75
2397 2630 1.110442 CGGTGAGAGAGATCTGCCTT 58.890 55.000 0.00 0.00 0.00 4.35
2398 2631 1.066908 CGGTGAGAGAGATCTGCCTTC 59.933 57.143 0.00 0.00 0.00 3.46
2399 2632 2.106566 GGTGAGAGAGATCTGCCTTCA 58.893 52.381 0.00 0.00 0.00 3.02
2400 2633 2.159114 GGTGAGAGAGATCTGCCTTCAC 60.159 54.545 0.00 8.64 0.00 3.18
2401 2634 2.106566 TGAGAGAGATCTGCCTTCACC 58.893 52.381 0.00 0.00 0.00 4.02
2402 2635 1.066908 GAGAGAGATCTGCCTTCACCG 59.933 57.143 0.00 0.00 0.00 4.94
2403 2636 0.820871 GAGAGATCTGCCTTCACCGT 59.179 55.000 0.00 0.00 0.00 4.83
2404 2637 1.205893 GAGAGATCTGCCTTCACCGTT 59.794 52.381 0.00 0.00 0.00 4.44
2405 2638 1.625818 AGAGATCTGCCTTCACCGTTT 59.374 47.619 0.00 0.00 0.00 3.60
2406 2639 2.039084 AGAGATCTGCCTTCACCGTTTT 59.961 45.455 0.00 0.00 0.00 2.43
2407 2640 2.814336 GAGATCTGCCTTCACCGTTTTT 59.186 45.455 0.00 0.00 0.00 1.94
2439 2672 3.797039 TGAGAATAATCTGCCTTCACCG 58.203 45.455 0.00 0.00 35.54 4.94
2441 2674 3.798202 AGAATAATCTGCCTTCACCGTC 58.202 45.455 0.00 0.00 33.59 4.79
2451 2684 4.961511 TCACCGTCGGCAGTGCAC 62.962 66.667 18.61 9.40 33.90 4.57
2452 2685 4.969196 CACCGTCGGCAGTGCACT 62.969 66.667 15.25 15.25 0.00 4.40
2453 2686 4.664677 ACCGTCGGCAGTGCACTC 62.665 66.667 18.64 11.89 0.00 3.51
2454 2687 4.363990 CCGTCGGCAGTGCACTCT 62.364 66.667 18.64 0.00 0.00 3.24
2455 2688 2.807045 CGTCGGCAGTGCACTCTC 60.807 66.667 18.64 11.76 0.00 3.20
2456 2689 2.653702 GTCGGCAGTGCACTCTCT 59.346 61.111 18.64 0.00 0.00 3.10
2457 2690 1.005630 GTCGGCAGTGCACTCTCTT 60.006 57.895 18.64 0.00 0.00 2.85
2458 2691 1.005748 TCGGCAGTGCACTCTCTTG 60.006 57.895 18.64 7.61 0.00 3.02
2459 2692 1.301244 CGGCAGTGCACTCTCTTGT 60.301 57.895 18.64 0.00 0.00 3.16
2460 2693 1.563435 CGGCAGTGCACTCTCTTGTG 61.563 60.000 18.64 5.96 40.62 3.33
2502 2735 4.493618 TCTTCCTATAGCTAGTGGCCAAT 58.506 43.478 11.94 11.94 43.05 3.16
2503 2736 4.284490 TCTTCCTATAGCTAGTGGCCAATG 59.716 45.833 17.71 7.12 43.05 2.82
2734 3048 1.682323 GGGCACACTACTAGCTACTCC 59.318 57.143 0.00 0.00 0.00 3.85
2735 3049 1.334243 GGCACACTACTAGCTACTCCG 59.666 57.143 0.00 0.00 0.00 4.63
2736 3050 1.334243 GCACACTACTAGCTACTCCGG 59.666 57.143 0.00 0.00 0.00 5.14
2737 3051 2.641305 CACACTACTAGCTACTCCGGT 58.359 52.381 0.00 0.00 0.00 5.28
2738 3052 2.613133 CACACTACTAGCTACTCCGGTC 59.387 54.545 0.00 0.00 0.00 4.79
2739 3053 2.220313 CACTACTAGCTACTCCGGTCC 58.780 57.143 0.00 0.00 0.00 4.46
2740 3054 2.126057 ACTACTAGCTACTCCGGTCCT 58.874 52.381 0.00 0.00 0.00 3.85
2741 3055 2.158784 ACTACTAGCTACTCCGGTCCTG 60.159 54.545 0.00 0.00 0.00 3.86
2742 3056 0.106619 ACTAGCTACTCCGGTCCTGG 60.107 60.000 0.00 0.00 0.00 4.45
2743 3057 0.183014 CTAGCTACTCCGGTCCTGGA 59.817 60.000 0.00 0.00 36.37 3.86
2774 3088 3.245229 ACAATTAAGCCACATCCCACAGA 60.245 43.478 0.00 0.00 0.00 3.41
2780 3094 1.760527 CACATCCCACAGACCCACA 59.239 57.895 0.00 0.00 0.00 4.17
2781 3095 0.110295 CACATCCCACAGACCCACAA 59.890 55.000 0.00 0.00 0.00 3.33
2782 3096 1.075601 ACATCCCACAGACCCACAAT 58.924 50.000 0.00 0.00 0.00 2.71
2783 3097 1.428912 ACATCCCACAGACCCACAATT 59.571 47.619 0.00 0.00 0.00 2.32
2784 3098 2.647299 ACATCCCACAGACCCACAATTA 59.353 45.455 0.00 0.00 0.00 1.40
2785 3099 3.075283 ACATCCCACAGACCCACAATTAA 59.925 43.478 0.00 0.00 0.00 1.40
2786 3100 3.433306 TCCCACAGACCCACAATTAAG 57.567 47.619 0.00 0.00 0.00 1.85
2787 3101 1.818674 CCCACAGACCCACAATTAAGC 59.181 52.381 0.00 0.00 0.00 3.09
2788 3102 1.468520 CCACAGACCCACAATTAAGCG 59.531 52.381 0.00 0.00 0.00 4.68
2806 3120 3.558411 GGTAGCTTCTGCGCGCAG 61.558 66.667 46.54 46.54 45.42 5.18
2821 3135 4.704833 CAGTGGCCGGTGGTCAGG 62.705 72.222 1.90 0.00 38.31 3.86
2829 3150 2.352805 GGTGGTCAGGGCCAAGAG 59.647 66.667 6.18 0.00 40.68 2.85
2854 3183 4.400567 ACCAATACACGAGTAGAGTTACCC 59.599 45.833 0.00 0.00 32.86 3.69
2857 3188 1.093159 CACGAGTAGAGTTACCCGCT 58.907 55.000 0.00 0.00 34.75 5.52
2858 3189 1.093159 ACGAGTAGAGTTACCCGCTG 58.907 55.000 0.00 0.00 34.75 5.18
2859 3190 0.381089 CGAGTAGAGTTACCCGCTGG 59.619 60.000 0.00 0.00 37.80 4.85
2861 3192 2.648059 GAGTAGAGTTACCCGCTGGTA 58.352 52.381 2.41 2.41 45.45 3.25
2862 3193 2.357323 GAGTAGAGTTACCCGCTGGTAC 59.643 54.545 6.51 3.05 46.89 3.34
2864 3195 0.893447 AGAGTTACCCGCTGGTACAC 59.107 55.000 6.51 8.62 46.89 2.90
2866 3197 0.895100 AGTTACCCGCTGGTACACGA 60.895 55.000 6.51 0.00 46.89 4.35
2869 3200 4.063967 CCCGCTGGTACACGAGCA 62.064 66.667 15.30 0.00 46.19 4.26
2922 3265 2.159531 CGTCTCATTTCGGTGGTACGTA 60.160 50.000 0.00 0.00 34.94 3.57
2924 3267 2.159531 TCTCATTTCGGTGGTACGTACG 60.160 50.000 18.98 15.01 34.94 3.67
2925 3268 1.539388 TCATTTCGGTGGTACGTACGT 59.461 47.619 25.98 25.98 34.94 3.57
2926 3269 2.744741 TCATTTCGGTGGTACGTACGTA 59.255 45.455 23.60 23.60 34.94 3.57
2939 3282 2.159476 ACGTACGTAGTGGCTGTACATG 60.159 50.000 21.41 0.00 45.73 3.21
3010 3390 1.444553 GGAGGAACGAGTCGTGCAG 60.445 63.158 24.73 0.00 39.99 4.41
3014 3394 0.596600 GGAACGAGTCGTGCAGAACA 60.597 55.000 24.73 0.00 39.99 3.18
3017 3397 1.661509 CGAGTCGTGCAGAACAGCA 60.662 57.895 3.82 0.00 43.35 4.41
3031 3411 1.153647 CAGCAAGCCCACATGCATG 60.154 57.895 25.09 25.09 42.93 4.06
3033 3413 2.974717 CAAGCCCACATGCATGCA 59.025 55.556 26.53 25.04 0.00 3.96
3035 3415 1.608336 AAGCCCACATGCATGCACT 60.608 52.632 25.37 11.75 0.00 4.40
3036 3416 1.601419 AAGCCCACATGCATGCACTC 61.601 55.000 25.37 13.20 0.00 3.51
3038 3418 2.420568 CCCACATGCATGCACTCCC 61.421 63.158 25.37 0.00 0.00 4.30
3040 3420 2.438975 ACATGCATGCACTCCCCG 60.439 61.111 25.37 9.82 0.00 5.73
3041 3421 3.896133 CATGCATGCACTCCCCGC 61.896 66.667 25.37 0.00 0.00 6.13
3042 3422 4.119363 ATGCATGCACTCCCCGCT 62.119 61.111 25.37 0.38 0.00 5.52
3043 3423 2.745308 ATGCATGCACTCCCCGCTA 61.745 57.895 25.37 0.00 0.00 4.26
3044 3424 2.590007 GCATGCACTCCCCGCTAG 60.590 66.667 14.21 0.00 0.00 3.42
3046 3426 3.083349 ATGCACTCCCCGCTAGCA 61.083 61.111 16.45 0.00 39.79 3.49
3047 3427 2.669133 ATGCACTCCCCGCTAGCAA 61.669 57.895 16.45 0.00 38.85 3.91
3048 3428 2.512515 GCACTCCCCGCTAGCAAG 60.513 66.667 16.45 8.55 0.00 4.01
3049 3429 2.512515 CACTCCCCGCTAGCAAGC 60.513 66.667 16.45 0.00 45.86 4.01
3059 3439 3.538614 TAGCAAGCTCCGCTAGGG 58.461 61.111 12.53 0.00 38.25 3.53
3097 3491 9.079833 CACAAATTCAGGAATTCAATCATGTAC 57.920 33.333 7.93 0.00 39.88 2.90
3098 3492 9.028284 ACAAATTCAGGAATTCAATCATGTACT 57.972 29.630 7.93 0.00 39.88 2.73
3099 3493 9.297586 CAAATTCAGGAATTCAATCATGTACTG 57.702 33.333 7.93 2.29 39.88 2.74
3100 3494 8.585471 AATTCAGGAATTCAATCATGTACTGT 57.415 30.769 7.93 0.00 36.34 3.55
3101 3495 6.990341 TCAGGAATTCAATCATGTACTGTG 57.010 37.500 7.93 0.00 33.10 3.66
3103 3497 6.595326 TCAGGAATTCAATCATGTACTGTGAC 59.405 38.462 7.93 0.00 33.10 3.67
3104 3498 5.582269 AGGAATTCAATCATGTACTGTGACG 59.418 40.000 7.93 0.00 0.00 4.35
3105 3499 5.220662 GGAATTCAATCATGTACTGTGACGG 60.221 44.000 7.93 0.00 0.00 4.79
3106 3500 4.529109 TTCAATCATGTACTGTGACGGA 57.471 40.909 0.00 3.12 0.00 4.69
3107 3501 4.110036 TCAATCATGTACTGTGACGGAG 57.890 45.455 0.00 0.00 0.00 4.63
3108 3502 3.761752 TCAATCATGTACTGTGACGGAGA 59.238 43.478 0.00 0.00 0.00 3.71
3109 3503 4.402474 TCAATCATGTACTGTGACGGAGAT 59.598 41.667 0.00 0.00 0.00 2.75
3110 3504 4.576216 ATCATGTACTGTGACGGAGATC 57.424 45.455 0.00 0.00 0.00 2.75
3111 3505 3.621558 TCATGTACTGTGACGGAGATCT 58.378 45.455 0.00 0.00 0.00 2.75
3112 3506 4.777463 TCATGTACTGTGACGGAGATCTA 58.223 43.478 0.00 0.00 0.00 1.98
3113 3507 5.377478 TCATGTACTGTGACGGAGATCTAT 58.623 41.667 0.00 0.00 0.00 1.98
3114 3508 5.470437 TCATGTACTGTGACGGAGATCTATC 59.530 44.000 0.00 0.00 0.00 2.08
3115 3509 4.135306 TGTACTGTGACGGAGATCTATCC 58.865 47.826 0.00 0.00 35.88 2.59
3116 3510 3.298686 ACTGTGACGGAGATCTATCCA 57.701 47.619 0.00 0.00 39.53 3.41
3117 3511 3.838565 ACTGTGACGGAGATCTATCCAT 58.161 45.455 0.00 0.00 39.53 3.41
3134 3528 4.831674 TCCATACCATCCATGCATCTAG 57.168 45.455 0.00 0.00 0.00 2.43
3139 3533 1.073444 CCATCCATGCATCTAGCCAGT 59.927 52.381 0.00 0.00 44.83 4.00
3140 3534 2.303890 CCATCCATGCATCTAGCCAGTA 59.696 50.000 0.00 0.00 44.83 2.74
3141 3535 3.597255 CATCCATGCATCTAGCCAGTAG 58.403 50.000 0.00 0.00 44.83 2.57
3142 3536 1.345741 TCCATGCATCTAGCCAGTAGC 59.654 52.381 0.00 0.00 44.83 3.58
3174 3568 6.527423 AGTAGTACTATCTCACTAGCTGTCC 58.473 44.000 5.75 0.00 0.00 4.02
3188 3582 1.303561 TGTCCGGCCAGTACGTACT 60.304 57.895 22.45 22.45 36.90 2.73
3235 3629 2.293122 TGCTTGTACAAATGGACTGCAC 59.707 45.455 10.03 0.00 0.00 4.57
3236 3630 2.293122 GCTTGTACAAATGGACTGCACA 59.707 45.455 10.03 0.00 0.00 4.57
3237 3631 3.057315 GCTTGTACAAATGGACTGCACAT 60.057 43.478 10.03 0.00 0.00 3.21
3238 3632 4.155826 GCTTGTACAAATGGACTGCACATA 59.844 41.667 10.03 0.00 0.00 2.29
3239 3633 5.674569 GCTTGTACAAATGGACTGCACATAG 60.675 44.000 10.03 0.00 0.00 2.23
3240 3634 3.689161 TGTACAAATGGACTGCACATAGC 59.311 43.478 0.00 0.00 45.96 2.97
3241 3635 2.094675 ACAAATGGACTGCACATAGCC 58.905 47.619 0.00 0.00 44.83 3.93
3242 3636 2.093890 CAAATGGACTGCACATAGCCA 58.906 47.619 0.00 0.00 44.83 4.75
3243 3637 2.048444 AATGGACTGCACATAGCCAG 57.952 50.000 0.00 0.00 44.83 4.85
3244 3638 0.914644 ATGGACTGCACATAGCCAGT 59.085 50.000 0.00 0.00 44.83 4.00
3245 3639 1.567357 TGGACTGCACATAGCCAGTA 58.433 50.000 0.00 0.00 44.83 2.74
3279 3673 0.388391 CAACCAATCAACCGCGCATT 60.388 50.000 8.75 0.00 0.00 3.56
3285 3679 3.743911 CCAATCAACCGCGCATTATAGTA 59.256 43.478 8.75 0.00 0.00 1.82
3290 3684 2.607187 ACCGCGCATTATAGTAGCATC 58.393 47.619 8.75 0.00 0.00 3.91
3291 3685 2.029380 ACCGCGCATTATAGTAGCATCA 60.029 45.455 8.75 0.00 0.00 3.07
3292 3686 3.190079 CCGCGCATTATAGTAGCATCAT 58.810 45.455 8.75 0.00 0.00 2.45
3293 3687 3.618594 CCGCGCATTATAGTAGCATCATT 59.381 43.478 8.75 0.00 0.00 2.57
3294 3688 4.093408 CCGCGCATTATAGTAGCATCATTT 59.907 41.667 8.75 0.00 0.00 2.32
3295 3689 5.290885 CCGCGCATTATAGTAGCATCATTTA 59.709 40.000 8.75 0.00 0.00 1.40
3297 3691 7.401860 CGCGCATTATAGTAGCATCATTTAAT 58.598 34.615 8.75 0.00 0.00 1.40
3298 3692 7.904977 CGCGCATTATAGTAGCATCATTTAATT 59.095 33.333 8.75 0.00 0.00 1.40
3352 3781 6.039382 AGCTATTTTCCTTTTGAAGTCGTGTT 59.961 34.615 0.00 0.00 33.63 3.32
3356 3785 3.202906 TCCTTTTGAAGTCGTGTTCCTG 58.797 45.455 0.00 0.00 0.00 3.86
3367 3796 1.813862 CGTGTTCCTGAGGGCTTTGAA 60.814 52.381 0.00 0.00 0.00 2.69
3368 3797 1.609072 GTGTTCCTGAGGGCTTTGAAC 59.391 52.381 0.00 0.00 36.67 3.18
3383 3817 6.052360 GGCTTTGAACCATTAAAAAGGTCAA 58.948 36.000 0.52 0.52 37.07 3.18
3391 3825 9.764363 GAACCATTAAAAAGGTCAAAAGAGAAT 57.236 29.630 0.00 0.00 37.07 2.40
3393 3827 7.657354 ACCATTAAAAAGGTCAAAAGAGAATGC 59.343 33.333 0.00 0.00 30.79 3.56
3398 3832 2.039084 AGGTCAAAAGAGAATGCTCGGT 59.961 45.455 0.00 0.00 45.98 4.69
3405 3839 7.061094 GTCAAAAGAGAATGCTCGGTTAATTTG 59.939 37.037 0.00 2.72 45.98 2.32
3407 3841 5.551760 AGAGAATGCTCGGTTAATTTGTG 57.448 39.130 0.00 0.00 45.98 3.33
3415 3854 4.794169 CTCGGTTAATTTGTGAAACCCAG 58.206 43.478 2.22 0.00 39.63 4.45
3418 3857 3.070302 GGTTAATTTGTGAAACCCAGGCA 59.930 43.478 0.00 0.00 37.31 4.75
3430 3869 5.836358 TGAAACCCAGGCAAAAATAGTTACT 59.164 36.000 0.00 0.00 0.00 2.24
3434 3873 4.887655 CCCAGGCAAAAATAGTTACTAGGG 59.112 45.833 0.00 0.00 0.00 3.53
3435 3874 5.339695 CCCAGGCAAAAATAGTTACTAGGGA 60.340 44.000 0.00 0.00 31.77 4.20
3437 3876 6.415573 CAGGCAAAAATAGTTACTAGGGAGT 58.584 40.000 0.00 0.00 39.92 3.85
3438 3877 7.365295 CCAGGCAAAAATAGTTACTAGGGAGTA 60.365 40.741 0.00 0.00 37.10 2.59
3440 3879 7.402361 AGGCAAAAATAGTTACTAGGGAGTAGT 59.598 37.037 0.00 0.00 44.69 2.73
3442 3881 9.526713 GCAAAAATAGTTACTAGGGAGTAGTAC 57.473 37.037 0.00 0.00 42.85 2.73
3451 3890 9.571816 GTTACTAGGGAGTAGTACAATACATCT 57.428 37.037 2.52 0.00 42.85 2.90
3452 3891 9.570468 TTACTAGGGAGTAGTACAATACATCTG 57.430 37.037 2.52 0.00 42.85 2.90
3453 3892 5.793030 AGGGAGTAGTACAATACATCTGC 57.207 43.478 2.52 0.00 0.00 4.26
3454 3893 4.589374 AGGGAGTAGTACAATACATCTGCC 59.411 45.833 2.52 10.58 39.94 4.85
3455 3894 4.344102 GGGAGTAGTACAATACATCTGCCA 59.656 45.833 2.52 0.00 39.68 4.92
3457 3896 6.346096 GGAGTAGTACAATACATCTGCCAAA 58.654 40.000 2.52 0.00 0.00 3.28
3459 3898 5.810587 AGTAGTACAATACATCTGCCAAACG 59.189 40.000 2.52 0.00 0.00 3.60
3462 3901 1.130373 CAATACATCTGCCAAACGCGT 59.870 47.619 5.58 5.58 42.08 6.01
3464 3903 0.319986 TACATCTGCCAAACGCGTCA 60.320 50.000 14.44 4.97 42.08 4.35
3466 3905 0.453282 CATCTGCCAAACGCGTCAAG 60.453 55.000 14.44 4.92 42.08 3.02
3467 3906 0.602638 ATCTGCCAAACGCGTCAAGA 60.603 50.000 14.44 11.78 42.08 3.02
3468 3907 0.812014 TCTGCCAAACGCGTCAAGAA 60.812 50.000 14.44 0.00 42.08 2.52
3470 3909 0.237235 TGCCAAACGCGTCAAGAATC 59.763 50.000 14.44 0.00 42.08 2.52
3472 3911 0.179225 CCAAACGCGTCAAGAATCGG 60.179 55.000 14.44 0.21 0.00 4.18
3473 3912 0.179225 CAAACGCGTCAAGAATCGGG 60.179 55.000 14.44 0.00 43.61 5.14
3477 3916 1.353103 GCGTCAAGAATCGGGCATG 59.647 57.895 0.00 0.00 0.00 4.06
3478 3917 1.353103 CGTCAAGAATCGGGCATGC 59.647 57.895 9.90 9.90 0.00 4.06
3479 3918 1.368345 CGTCAAGAATCGGGCATGCA 61.368 55.000 21.36 0.00 0.00 3.96
3480 3919 1.027357 GTCAAGAATCGGGCATGCAT 58.973 50.000 21.36 0.85 0.00 3.96
3485 4089 2.708051 AGAATCGGGCATGCATCTATG 58.292 47.619 21.36 1.89 0.00 2.23
3490 4094 0.870393 GGGCATGCATCTATGTCGTG 59.130 55.000 21.36 0.00 33.53 4.35
3491 4095 0.870393 GGCATGCATCTATGTCGTGG 59.130 55.000 21.36 0.00 0.00 4.94
3512 4116 0.600255 AACAAGAAGGGAGTGACGCG 60.600 55.000 3.53 3.53 36.53 6.01
3515 4119 2.473664 AAGAAGGGAGTGACGCGTCG 62.474 60.000 31.88 0.00 42.50 5.12
3522 4126 2.355481 GTGACGCGTCGGAAACCT 60.355 61.111 31.88 0.00 0.00 3.50
3527 4131 1.735198 CGCGTCGGAAACCTAGCAA 60.735 57.895 0.00 0.00 0.00 3.91
3528 4132 1.082117 CGCGTCGGAAACCTAGCAAT 61.082 55.000 0.00 0.00 0.00 3.56
3533 4172 2.608090 GTCGGAAACCTAGCAATAGCAC 59.392 50.000 0.00 0.00 45.49 4.40
3538 4177 0.839946 ACCTAGCAATAGCACCCTGG 59.160 55.000 0.00 0.00 45.49 4.45
3547 4186 0.325860 TAGCACCCTGGTAACCGGAT 60.326 55.000 9.46 0.00 29.82 4.18
3560 4199 3.940640 CGGATGCGCCCGTGATTG 61.941 66.667 15.87 0.00 44.23 2.67
3561 4200 4.256090 GGATGCGCCCGTGATTGC 62.256 66.667 4.18 0.00 0.00 3.56
3630 4278 5.121105 CCAAGATCACAAGAGCATGTCATA 58.879 41.667 0.00 0.00 30.99 2.15
3634 4282 7.059202 AGATCACAAGAGCATGTCATATGTA 57.941 36.000 1.90 0.00 30.99 2.29
3656 4304 3.616935 TCGAATCCGACTAACAGCG 57.383 52.632 0.00 0.00 40.30 5.18
3722 4370 1.004745 CCCGCCAAGCCAAGGATATAT 59.995 52.381 0.00 0.00 0.00 0.86
3723 4371 2.555227 CCCGCCAAGCCAAGGATATATT 60.555 50.000 0.00 0.00 0.00 1.28
3727 4375 5.066505 CCGCCAAGCCAAGGATATATTTATC 59.933 44.000 0.00 0.00 34.59 1.75
3764 4420 0.740868 TTTCCGATCAGCGCCAAGAG 60.741 55.000 2.29 0.00 39.11 2.85
3765 4421 3.267860 CCGATCAGCGCCAAGAGC 61.268 66.667 2.29 1.39 39.11 4.09
4035 4709 1.887707 GCGTCGGTTCATCCATCCC 60.888 63.158 0.00 0.00 35.57 3.85
4087 4770 1.069596 GGCTGGCCCAAAAACACAG 59.930 57.895 0.00 0.00 0.00 3.66
4134 4817 2.455032 TCATTCGTTGTGGTTTTTGCG 58.545 42.857 0.00 0.00 0.00 4.85
4156 4839 4.320690 CGTGTGAAAAATCTAAATGCACCG 59.679 41.667 0.00 0.00 0.00 4.94
4158 4841 4.520874 TGTGAAAAATCTAAATGCACCGGA 59.479 37.500 9.46 0.00 0.00 5.14
4242 4953 4.756135 AGCATTGCCACTTAAAAATTGGTG 59.244 37.500 4.70 0.00 33.99 4.17
4243 4954 4.514816 GCATTGCCACTTAAAAATTGGTGT 59.485 37.500 0.00 0.00 33.99 4.16
4244 4955 5.698545 GCATTGCCACTTAAAAATTGGTGTA 59.301 36.000 0.00 0.00 33.99 2.90
4406 5361 1.281867 TGGTTGCATCTTGAGGTAGGG 59.718 52.381 0.00 0.00 0.00 3.53
4440 5395 4.201822 GCATATGTTGGAGTCGACCTTTTC 60.202 45.833 13.01 2.64 0.00 2.29
4442 5397 2.557317 TGTTGGAGTCGACCTTTTCAC 58.443 47.619 13.01 2.69 0.00 3.18
4443 5398 1.525619 GTTGGAGTCGACCTTTTCACG 59.474 52.381 13.01 0.00 0.00 4.35
4445 5400 1.289800 GGAGTCGACCTTTTCACGGC 61.290 60.000 13.01 0.00 0.00 5.68
4446 5401 0.599204 GAGTCGACCTTTTCACGGCA 60.599 55.000 13.01 0.00 34.03 5.69
4448 5403 1.274167 AGTCGACCTTTTCACGGCATA 59.726 47.619 13.01 0.00 34.03 3.14
4449 5404 1.659098 GTCGACCTTTTCACGGCATAG 59.341 52.381 3.51 0.00 0.00 2.23
4450 5405 1.006832 CGACCTTTTCACGGCATAGG 58.993 55.000 0.00 0.00 0.00 2.57
4468 5423 7.064609 CGGCATAGGTAATAACTAATGTCCATG 59.935 40.741 0.00 0.00 0.00 3.66
4469 5424 7.883311 GGCATAGGTAATAACTAATGTCCATGT 59.117 37.037 0.00 0.00 0.00 3.21
4470 5425 9.284968 GCATAGGTAATAACTAATGTCCATGTT 57.715 33.333 0.00 0.00 0.00 2.71
4472 5427 7.568199 AGGTAATAACTAATGTCCATGTTGC 57.432 36.000 0.00 0.00 0.00 4.17
4473 5428 7.116075 AGGTAATAACTAATGTCCATGTTGCA 58.884 34.615 0.00 0.00 0.00 4.08
4474 5429 7.779798 AGGTAATAACTAATGTCCATGTTGCAT 59.220 33.333 0.00 0.00 0.00 3.96
4475 5430 8.413229 GGTAATAACTAATGTCCATGTTGCATT 58.587 33.333 10.18 10.18 36.83 3.56
4477 5432 4.621068 ACTAATGTCCATGTTGCATTCG 57.379 40.909 9.06 6.88 34.97 3.34
4831 5806 2.202866 GGCATCTCCGTCCAGAAGA 58.797 57.895 0.00 0.00 0.00 2.87
4923 5898 2.874780 CAGTACTCGCGCACCGTC 60.875 66.667 8.75 0.00 38.35 4.79
4929 5904 2.506217 TCGCGCACCGTCTTCATC 60.506 61.111 8.75 0.00 38.35 2.92
5215 6200 1.064758 TCACAAAGCACCCAGTCTTGT 60.065 47.619 0.00 0.00 0.00 3.16
5216 6201 2.171659 TCACAAAGCACCCAGTCTTGTA 59.828 45.455 0.00 0.00 0.00 2.41
5217 6202 2.290641 CACAAAGCACCCAGTCTTGTAC 59.709 50.000 0.00 0.00 0.00 2.90
5218 6203 1.531149 CAAAGCACCCAGTCTTGTACG 59.469 52.381 0.00 0.00 0.00 3.67
5219 6204 0.756903 AAGCACCCAGTCTTGTACGT 59.243 50.000 0.00 0.00 0.00 3.57
5253 6238 3.389983 TCGAATTATTACCCCAGTGGAGG 59.610 47.826 11.95 12.91 38.00 4.30
5359 6534 3.899726 TGTGGTTTGGTTAACTAGCCAA 58.100 40.909 15.34 5.31 43.47 4.52
5392 6567 1.175983 TTGTGCGGGAAATGTCACCC 61.176 55.000 0.00 0.00 42.43 4.61
5494 6671 5.151297 ACTGGGGCTTCACAATATTTTTG 57.849 39.130 0.00 0.00 0.00 2.44
5527 6705 4.582240 GGGCTCAGCTTAAGCAGATATTTT 59.418 41.667 28.39 2.88 45.16 1.82
5530 6708 5.067023 GCTCAGCTTAAGCAGATATTTTGGT 59.933 40.000 28.39 0.79 45.16 3.67
5534 6712 7.280876 TCAGCTTAAGCAGATATTTTGGTACAG 59.719 37.037 28.39 0.00 45.16 2.74
5540 6718 5.819901 AGCAGATATTTTGGTACAGCTCTTC 59.180 40.000 0.00 0.00 42.39 2.87
5543 6721 6.259608 CAGATATTTTGGTACAGCTCTTCCAG 59.740 42.308 0.00 0.00 42.39 3.86
5549 6727 4.093743 TGGTACAGCTCTTCCAGTATCAA 58.906 43.478 0.00 0.00 0.00 2.57
5550 6728 4.530553 TGGTACAGCTCTTCCAGTATCAAA 59.469 41.667 0.00 0.00 0.00 2.69
5551 6729 5.189736 TGGTACAGCTCTTCCAGTATCAAAT 59.810 40.000 0.00 0.00 0.00 2.32
5554 6732 7.121315 GGTACAGCTCTTCCAGTATCAAATTTT 59.879 37.037 0.00 0.00 0.00 1.82
5557 6735 9.247861 ACAGCTCTTCCAGTATCAAATTTTTAT 57.752 29.630 0.00 0.00 0.00 1.40
5558 6736 9.727627 CAGCTCTTCCAGTATCAAATTTTTATC 57.272 33.333 0.00 0.00 0.00 1.75
5588 7679 2.237392 GGGCTTGTGTTGGAGATACTCT 59.763 50.000 0.00 0.00 0.00 3.24
5628 7719 0.655733 ACTAGCACAACACAACGCAC 59.344 50.000 0.00 0.00 0.00 5.34
5646 7742 3.863424 CGCACCTTTAACGACACATATCT 59.137 43.478 0.00 0.00 0.00 1.98
5649 7745 5.581085 GCACCTTTAACGACACATATCTCTT 59.419 40.000 0.00 0.00 0.00 2.85
5671 7767 3.129813 TGTGGTTCTGGCTGTACTATACG 59.870 47.826 0.00 0.00 0.00 3.06
5676 7772 3.777478 TCTGGCTGTACTATACGTTTGC 58.223 45.455 0.00 0.00 0.00 3.68
5677 7773 2.864343 CTGGCTGTACTATACGTTTGCC 59.136 50.000 0.00 0.00 39.53 4.52
5690 7786 0.804989 GTTTGCCCGAATCAGGACAG 59.195 55.000 0.00 0.00 0.00 3.51
5702 7798 0.105593 CAGGACAGCATCACGGCTAT 59.894 55.000 0.00 0.00 43.68 2.97
5703 7799 1.341209 CAGGACAGCATCACGGCTATA 59.659 52.381 0.00 0.00 43.68 1.31
5707 7803 3.187227 GGACAGCATCACGGCTATATTTG 59.813 47.826 0.00 0.00 43.68 2.32
5741 7837 6.974932 GTGATAGAACACATCACTGACAAT 57.025 37.500 7.95 0.00 45.75 2.71
5743 7839 7.810658 GTGATAGAACACATCACTGACAATTT 58.189 34.615 7.95 0.00 45.75 1.82
5766 7862 6.822667 TTTTTGACATCACAGACATGCTAT 57.177 33.333 0.00 0.00 0.00 2.97
5767 7863 5.806366 TTTGACATCACAGACATGCTATG 57.194 39.130 0.00 0.00 0.00 2.23
5783 7879 4.189539 TGGTTCACCACAATGCCC 57.810 55.556 0.00 0.00 42.01 5.36
5784 7880 1.900981 TGGTTCACCACAATGCCCG 60.901 57.895 0.00 0.00 42.01 6.13
5785 7881 1.602323 GGTTCACCACAATGCCCGA 60.602 57.895 0.00 0.00 35.64 5.14
5786 7882 1.175983 GGTTCACCACAATGCCCGAA 61.176 55.000 0.00 0.00 35.64 4.30
5787 7883 0.039527 GTTCACCACAATGCCCGAAC 60.040 55.000 0.00 0.00 0.00 3.95
5788 7884 0.179004 TTCACCACAATGCCCGAACT 60.179 50.000 0.00 0.00 0.00 3.01
5789 7885 0.179004 TCACCACAATGCCCGAACTT 60.179 50.000 0.00 0.00 0.00 2.66
5790 7886 1.072489 TCACCACAATGCCCGAACTTA 59.928 47.619 0.00 0.00 0.00 2.24
5791 7887 2.091541 CACCACAATGCCCGAACTTAT 58.908 47.619 0.00 0.00 0.00 1.73
5792 7888 2.491693 CACCACAATGCCCGAACTTATT 59.508 45.455 0.00 0.00 0.00 1.40
5793 7889 2.491693 ACCACAATGCCCGAACTTATTG 59.508 45.455 0.00 0.00 36.77 1.90
5794 7890 2.752354 CCACAATGCCCGAACTTATTGA 59.248 45.455 0.00 0.00 35.21 2.57
5795 7891 3.192422 CCACAATGCCCGAACTTATTGAA 59.808 43.478 0.00 0.00 35.21 2.69
5824 7920 3.435327 TGCATGTTGTTAGAATCACGTCC 59.565 43.478 0.00 0.00 0.00 4.79
5831 7927 3.114065 GTTAGAATCACGTCCATCCGTC 58.886 50.000 0.00 0.00 39.45 4.79
5837 7933 0.523546 CACGTCCATCCGTCGAAGAG 60.524 60.000 0.00 0.00 39.45 2.85
5852 7948 4.859798 GTCGAAGAGGAGTAATCACACAAG 59.140 45.833 0.00 0.00 36.95 3.16
5853 7949 3.614616 CGAAGAGGAGTAATCACACAAGC 59.385 47.826 0.00 0.00 0.00 4.01
5865 7961 4.717233 TCACACAAGCACAAGAAACAAT 57.283 36.364 0.00 0.00 0.00 2.71
5869 7965 4.202111 ACACAAGCACAAGAAACAATACCC 60.202 41.667 0.00 0.00 0.00 3.69
5871 7967 4.037923 ACAAGCACAAGAAACAATACCCAG 59.962 41.667 0.00 0.00 0.00 4.45
5876 7972 6.041979 AGCACAAGAAACAATACCCAGATTTT 59.958 34.615 0.00 0.00 0.00 1.82
5895 8004 2.607631 TTTAACGAGGCTTATCCCCG 57.392 50.000 0.00 0.00 34.51 5.73
5904 8013 2.078452 CTTATCCCCGGGGCATGAT 58.922 57.895 36.68 24.98 34.68 2.45
5905 8014 0.405585 CTTATCCCCGGGGCATGATT 59.594 55.000 36.68 16.41 34.68 2.57
5909 8018 1.528309 CCCCGGGGCATGATTACAC 60.528 63.158 31.01 0.00 0.00 2.90
5910 8019 1.891919 CCCGGGGCATGATTACACG 60.892 63.158 14.71 0.00 0.00 4.49
5911 8020 1.153249 CCGGGGCATGATTACACGT 60.153 57.895 0.00 0.00 0.00 4.49
5912 8021 0.746563 CCGGGGCATGATTACACGTT 60.747 55.000 0.00 0.00 0.00 3.99
5913 8022 1.091537 CGGGGCATGATTACACGTTT 58.908 50.000 0.00 0.00 0.00 3.60
5914 8023 1.063469 CGGGGCATGATTACACGTTTC 59.937 52.381 0.00 0.00 0.00 2.78
5920 8029 3.932710 GCATGATTACACGTTTCTCTCCA 59.067 43.478 0.00 0.00 0.00 3.86
5921 8030 4.572389 GCATGATTACACGTTTCTCTCCAT 59.428 41.667 0.00 0.00 0.00 3.41
5922 8031 5.503031 GCATGATTACACGTTTCTCTCCATG 60.503 44.000 0.00 0.00 0.00 3.66
5925 8034 6.097356 TGATTACACGTTTCTCTCCATGTAC 58.903 40.000 0.00 0.00 0.00 2.90
5931 8053 4.463186 ACGTTTCTCTCCATGTACTAAGCT 59.537 41.667 0.00 0.00 0.00 3.74
5933 8055 5.393135 CGTTTCTCTCCATGTACTAAGCTCA 60.393 44.000 0.00 0.00 0.00 4.26
5934 8056 5.843673 TTCTCTCCATGTACTAAGCTCAG 57.156 43.478 0.00 0.00 0.00 3.35
5959 8081 2.359900 GCCATCAGACAGGTTTTCGAT 58.640 47.619 0.00 0.00 0.00 3.59
5961 8083 2.604914 CCATCAGACAGGTTTTCGATCG 59.395 50.000 9.36 9.36 0.00 3.69
5963 8085 1.272490 TCAGACAGGTTTTCGATCGCT 59.728 47.619 11.09 0.00 0.00 4.93
5964 8086 1.391485 CAGACAGGTTTTCGATCGCTG 59.609 52.381 11.09 13.73 0.00 5.18
5966 8088 1.298859 ACAGGTTTTCGATCGCTGCC 61.299 55.000 11.09 9.74 0.00 4.85
5968 8090 2.761195 GGTTTTCGATCGCTGCCCC 61.761 63.158 11.09 2.59 0.00 5.80
5969 8091 2.817834 TTTTCGATCGCTGCCCCG 60.818 61.111 11.09 0.00 0.00 5.73
6005 8127 3.379445 CTGCCACGAGTACCCGGT 61.379 66.667 0.75 0.00 0.00 5.28
6010 8132 2.282462 ACGAGTACCCGGTCCGTT 60.282 61.111 11.06 0.00 0.00 4.44
6012 8134 2.888111 GAGTACCCGGTCCGTTCC 59.112 66.667 11.06 0.00 0.00 3.62
6033 8155 3.871594 CCTCTCGTGATATTTGTCCAACC 59.128 47.826 0.00 0.00 0.00 3.77
6088 8210 8.440771 ACCTATGATGCCCTTATATAATAAGCC 58.559 37.037 0.00 0.00 0.00 4.35
6101 8224 1.675552 ATAAGCCCGGTTACACATGC 58.324 50.000 0.00 0.00 0.00 4.06
6107 8230 1.206132 CCCGGTTACACATGCTCTACA 59.794 52.381 0.00 0.00 0.00 2.74
6126 8249 3.396560 ACACTAACAGTTAACCCTTCGC 58.603 45.455 0.88 0.00 0.00 4.70
6139 8262 3.870274 ACCCTTCGCTTATTACAAGTCC 58.130 45.455 0.00 0.00 0.00 3.85
6143 8266 4.935808 CCTTCGCTTATTACAAGTCCAACT 59.064 41.667 0.00 0.00 0.00 3.16
6145 8268 4.890088 TCGCTTATTACAAGTCCAACTGT 58.110 39.130 0.00 0.00 0.00 3.55
6148 8271 5.220416 CGCTTATTACAAGTCCAACTGTAGC 60.220 44.000 0.00 0.00 0.00 3.58
6150 8273 6.402226 GCTTATTACAAGTCCAACTGTAGCAC 60.402 42.308 0.00 0.00 0.00 4.40
6156 8279 2.434336 AGTCCAACTGTAGCACAACTCA 59.566 45.455 0.00 0.00 0.00 3.41
6158 8281 3.187227 GTCCAACTGTAGCACAACTCATG 59.813 47.826 0.00 0.00 0.00 3.07
6170 8293 7.104043 AGCACAACTCATGCACATAATATTT 57.896 32.000 0.00 0.00 45.92 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.139118 GAAGAAGAAGCTGCTCGTTGT 58.861 47.619 1.00 0.00 0.00 3.32
10 11 0.926846 CGATCCGAAGAAGAAGCTGC 59.073 55.000 0.00 0.00 0.00 5.25
12 13 1.202200 CGTCGATCCGAAGAAGAAGCT 60.202 52.381 0.00 0.00 37.53 3.74
23 24 4.609247 GAGGACGCCGTCGATCCG 62.609 72.222 11.60 0.00 39.32 4.18
39 40 0.679640 CAACCCAAGCTAATGCCGGA 60.680 55.000 5.05 0.00 40.80 5.14
48 49 0.853530 AGGAAGGTTCAACCCAAGCT 59.146 50.000 1.75 0.00 39.75 3.74
83 84 0.811219 CATGAATCGAAGCGCCCTGA 60.811 55.000 2.29 0.00 0.00 3.86
85 86 0.107703 TTCATGAATCGAAGCGCCCT 60.108 50.000 2.29 0.00 0.00 5.19
123 124 2.412089 CGCTACAACTCTGTAAGGTTGC 59.588 50.000 5.85 0.00 44.00 4.17
131 132 1.065701 CCGCTATCGCTACAACTCTGT 59.934 52.381 0.00 0.00 39.75 3.41
133 134 0.669077 CCCGCTATCGCTACAACTCT 59.331 55.000 0.00 0.00 0.00 3.24
137 138 1.362717 GAGCCCGCTATCGCTACAA 59.637 57.895 0.00 0.00 34.84 2.41
164 165 1.067846 CCGTCAGAATCGTCAGTTCCA 60.068 52.381 0.00 0.00 0.00 3.53
190 191 0.257039 ACCCACAGATTCCATGGAGC 59.743 55.000 15.53 11.38 35.33 4.70
222 223 2.115052 TCAATGCCAACCCGCAGT 59.885 55.556 0.00 0.00 43.26 4.40
230 231 1.543802 GGAATCAACCGTCAATGCCAA 59.456 47.619 0.00 0.00 0.00 4.52
258 259 0.534427 AGTCAGTGTCGTCGACTCCA 60.534 55.000 24.75 6.96 35.02 3.86
273 274 2.415512 CTCACTGTCGTCGTCATAGTCA 59.584 50.000 0.00 0.00 0.00 3.41
278 279 0.894184 ACCCTCACTGTCGTCGTCAT 60.894 55.000 0.00 0.00 0.00 3.06
289 290 0.249911 GCGTCAACTCAACCCTCACT 60.250 55.000 0.00 0.00 0.00 3.41
291 292 0.179234 TTGCGTCAACTCAACCCTCA 59.821 50.000 0.00 0.00 0.00 3.86
298 299 0.874175 CACCTCGTTGCGTCAACTCA 60.874 55.000 16.76 6.26 41.62 3.41
303 304 2.201708 TACCCACCTCGTTGCGTCA 61.202 57.895 0.00 0.00 0.00 4.35
347 348 1.195442 TATAATCGGGATGCGGGGCA 61.195 55.000 0.00 0.00 44.86 5.36
355 356 4.042809 TCACCAGCCAAATATAATCGGGAT 59.957 41.667 0.00 0.00 0.00 3.85
359 360 3.189287 GCCTCACCAGCCAAATATAATCG 59.811 47.826 0.00 0.00 0.00 3.34
362 363 3.554934 CAGCCTCACCAGCCAAATATAA 58.445 45.455 0.00 0.00 0.00 0.98
372 373 1.815003 CCTAAAAAGCAGCCTCACCAG 59.185 52.381 0.00 0.00 0.00 4.00
378 379 0.678048 CGCTCCCTAAAAAGCAGCCT 60.678 55.000 0.00 0.00 38.45 4.58
415 417 6.725364 CACATCCCCTAAAGCATATAATCCT 58.275 40.000 0.00 0.00 0.00 3.24
490 492 7.340487 AGGGCATCTTTAACAAATCCTCTAAAG 59.660 37.037 0.00 0.00 34.21 1.85
496 498 6.494059 ACTAAGGGCATCTTTAACAAATCCT 58.506 36.000 0.00 0.00 36.93 3.24
561 565 4.685169 ACTCCATTTGTATCAAAGCGTG 57.315 40.909 1.67 0.00 0.00 5.34
650 687 8.517878 GCATGCCTTTGATGTTATATTATGAGT 58.482 33.333 6.36 0.00 0.00 3.41
669 706 3.696051 CCAAACTTACTGTATGCATGCCT 59.304 43.478 16.68 8.18 0.00 4.75
696 733 7.859540 ACACTGACATTCTACTAGTAGGAGTA 58.140 38.462 26.06 12.13 34.06 2.59
698 735 6.824196 TGACACTGACATTCTACTAGTAGGAG 59.176 42.308 26.06 18.55 34.06 3.69
699 736 6.718294 TGACACTGACATTCTACTAGTAGGA 58.282 40.000 26.06 20.38 34.06 2.94
700 737 7.500892 AGATGACACTGACATTCTACTAGTAGG 59.499 40.741 26.06 14.72 34.06 3.18
757 794 9.823098 CGCTAGTAGTAGTATCGATAATTGTTT 57.177 33.333 11.05 0.00 0.00 2.83
792 832 2.154198 TCGCACAGTTGACGAATTAACG 59.846 45.455 0.00 0.00 39.31 3.18
889 929 4.380843 TGGAAGGCCAGAATCTTTTGTA 57.619 40.909 5.01 0.00 39.92 2.41
892 935 3.575687 CTTGTGGAAGGCCAGAATCTTTT 59.424 43.478 5.01 0.00 45.32 2.27
935 981 1.064314 AGACTGAGGATGGACGCTAGT 60.064 52.381 0.00 0.00 0.00 2.57
936 982 1.606668 GAGACTGAGGATGGACGCTAG 59.393 57.143 0.00 0.00 0.00 3.42
937 983 1.064685 TGAGACTGAGGATGGACGCTA 60.065 52.381 0.00 0.00 0.00 4.26
938 984 0.323816 TGAGACTGAGGATGGACGCT 60.324 55.000 0.00 0.00 0.00 5.07
940 986 1.135257 GTGTGAGACTGAGGATGGACG 60.135 57.143 0.00 0.00 0.00 4.79
941 987 2.165437 GAGTGTGAGACTGAGGATGGAC 59.835 54.545 0.00 0.00 33.83 4.02
942 988 2.042297 AGAGTGTGAGACTGAGGATGGA 59.958 50.000 0.00 0.00 33.83 3.41
943 989 2.455557 AGAGTGTGAGACTGAGGATGG 58.544 52.381 0.00 0.00 33.83 3.51
944 990 4.244066 CAAAGAGTGTGAGACTGAGGATG 58.756 47.826 0.00 0.00 33.83 3.51
945 991 3.260380 CCAAAGAGTGTGAGACTGAGGAT 59.740 47.826 0.00 0.00 33.83 3.24
946 992 2.630098 CCAAAGAGTGTGAGACTGAGGA 59.370 50.000 0.00 0.00 33.83 3.71
947 993 2.869636 GCCAAAGAGTGTGAGACTGAGG 60.870 54.545 0.00 0.00 33.83 3.86
964 1017 2.915659 ACTCGACGGGACTGCCAA 60.916 61.111 0.00 0.00 35.15 4.52
969 1022 2.281345 ACACGACTCGACGGGACT 60.281 61.111 0.00 0.00 39.16 3.85
971 1024 3.417224 CGACACGACTCGACGGGA 61.417 66.667 0.00 0.00 39.16 5.14
973 1026 2.202146 GACGACACGACTCGACGG 60.202 66.667 5.20 0.00 37.11 4.79
974 1027 2.202146 GGACGACACGACTCGACG 60.202 66.667 5.20 10.06 37.11 5.12
1042 1095 2.904866 CGCGAGGAGGAGGAGGAG 60.905 72.222 0.00 0.00 0.00 3.69
1560 1613 1.026182 TGACCATCTTGGCGATGTGC 61.026 55.000 0.00 0.00 46.56 4.57
1570 1623 2.846371 GCGAGTTGCTGACCATCTT 58.154 52.632 0.00 0.00 41.73 2.40
1571 1624 4.606071 GCGAGTTGCTGACCATCT 57.394 55.556 0.00 0.00 41.73 2.90
1629 1682 0.809385 TCGACGGTGAAGGCTTAGAG 59.191 55.000 0.00 0.00 0.00 2.43
1632 1685 1.210931 CGTCGACGGTGAAGGCTTA 59.789 57.895 29.70 0.00 35.37 3.09
1852 1905 0.246635 TACCTGCTCTTCGAGTTGGC 59.753 55.000 0.00 0.00 31.33 4.52
2032 2085 3.686241 TGCAATGCAGTATCACTTCACTC 59.314 43.478 2.72 0.00 33.32 3.51
2038 2091 1.066215 TCGGTGCAATGCAGTATCACT 60.066 47.619 8.73 0.00 40.08 3.41
2041 2094 2.613595 TCATTCGGTGCAATGCAGTATC 59.386 45.455 8.73 0.00 40.08 2.24
2086 2140 8.640651 TGCCATGAACGGTAATAGTAATAGTAA 58.359 33.333 0.00 0.00 0.00 2.24
2088 2142 7.058023 TGCCATGAACGGTAATAGTAATAGT 57.942 36.000 0.00 0.00 0.00 2.12
2089 2143 7.956420 TTGCCATGAACGGTAATAGTAATAG 57.044 36.000 0.00 0.00 0.00 1.73
2091 2145 6.826741 AGTTTGCCATGAACGGTAATAGTAAT 59.173 34.615 0.00 0.00 30.17 1.89
2093 2147 5.736813 AGTTTGCCATGAACGGTAATAGTA 58.263 37.500 0.00 0.00 30.17 1.82
2094 2148 4.585879 AGTTTGCCATGAACGGTAATAGT 58.414 39.130 0.00 0.00 30.17 2.12
2095 2149 4.035208 GGAGTTTGCCATGAACGGTAATAG 59.965 45.833 0.00 0.00 30.17 1.73
2097 2151 2.752903 GGAGTTTGCCATGAACGGTAAT 59.247 45.455 0.00 0.00 30.17 1.89
2101 2155 0.804989 GAGGAGTTTGCCATGAACGG 59.195 55.000 0.00 0.00 32.38 4.44
2105 2197 0.036388 GACGGAGGAGTTTGCCATGA 60.036 55.000 0.00 0.00 0.00 3.07
2106 2198 1.026718 GGACGGAGGAGTTTGCCATG 61.027 60.000 0.00 0.00 0.00 3.66
2108 2200 2.747686 GGACGGAGGAGTTTGCCA 59.252 61.111 0.00 0.00 0.00 4.92
2110 2202 2.027625 CACGGACGGAGGAGTTTGC 61.028 63.158 0.00 0.00 0.00 3.68
2118 2210 1.374343 TAGCTAGTGCACGGACGGAG 61.374 60.000 12.01 4.55 42.74 4.63
2124 2216 0.318275 GCTAGCTAGCTAGTGCACGG 60.318 60.000 39.05 22.05 45.67 4.94
2125 2217 3.171705 GCTAGCTAGCTAGTGCACG 57.828 57.895 39.05 22.66 45.67 5.34
2140 2232 2.226674 CAGACTGACAACGTCTCTGCTA 59.773 50.000 0.00 0.00 39.59 3.49
2141 2233 1.000827 CAGACTGACAACGTCTCTGCT 60.001 52.381 0.00 0.00 39.59 4.24
2142 2234 1.001268 TCAGACTGACAACGTCTCTGC 60.001 52.381 0.00 0.00 39.59 4.26
2143 2235 3.497118 GATCAGACTGACAACGTCTCTG 58.503 50.000 7.47 6.93 39.59 3.35
2149 2241 2.159379 TGGATCGATCAGACTGACAACG 60.159 50.000 25.93 13.62 0.00 4.10
2151 2243 4.743057 AATGGATCGATCAGACTGACAA 57.257 40.909 25.93 0.00 0.00 3.18
2152 2244 4.889995 AGTAATGGATCGATCAGACTGACA 59.110 41.667 25.93 13.34 0.00 3.58
2153 2245 5.009110 TGAGTAATGGATCGATCAGACTGAC 59.991 44.000 25.93 14.90 0.00 3.51
2154 2246 5.133221 TGAGTAATGGATCGATCAGACTGA 58.867 41.667 25.93 7.80 0.00 3.41
2155 2247 5.444663 TGAGTAATGGATCGATCAGACTG 57.555 43.478 25.93 0.00 0.00 3.51
2156 2248 6.151985 GGTATGAGTAATGGATCGATCAGACT 59.848 42.308 25.93 20.31 31.44 3.24
2159 2251 5.655488 GGGTATGAGTAATGGATCGATCAG 58.345 45.833 25.93 0.00 0.00 2.90
2186 2281 2.870372 GCATGACTTGACACGCCC 59.130 61.111 0.00 0.00 0.00 6.13
2190 2292 1.502231 AGACACGCATGACTTGACAC 58.498 50.000 0.00 0.00 0.00 3.67
2204 2306 5.665381 GCATTTAGCTCTTGGATAGACAC 57.335 43.478 0.00 0.00 41.15 3.67
2241 2361 2.552315 CAGTTGGTGTGCGTAAATTCCT 59.448 45.455 0.00 0.00 0.00 3.36
2345 2570 0.251916 AAGCCAACCCATTCGATCGA 59.748 50.000 15.15 15.15 0.00 3.59
2356 2581 4.379499 CGGATCTCAGTTTAAAAGCCAACC 60.379 45.833 0.00 0.00 0.00 3.77
2358 2583 3.756434 CCGGATCTCAGTTTAAAAGCCAA 59.244 43.478 0.00 0.00 0.00 4.52
2360 2589 3.127030 CACCGGATCTCAGTTTAAAAGCC 59.873 47.826 9.46 0.00 0.00 4.35
2369 2598 1.562008 TCTCTCTCACCGGATCTCAGT 59.438 52.381 9.46 0.00 0.00 3.41
2414 2647 6.349280 CGGTGAAGGCAGATTATTCTCAAAAA 60.349 38.462 0.00 0.00 0.00 1.94
2415 2648 5.123820 CGGTGAAGGCAGATTATTCTCAAAA 59.876 40.000 0.00 0.00 0.00 2.44
2416 2649 4.635765 CGGTGAAGGCAGATTATTCTCAAA 59.364 41.667 0.00 0.00 0.00 2.69
2417 2650 4.191544 CGGTGAAGGCAGATTATTCTCAA 58.808 43.478 0.00 0.00 0.00 3.02
2418 2651 3.197766 ACGGTGAAGGCAGATTATTCTCA 59.802 43.478 0.00 0.00 0.00 3.27
2419 2652 3.798202 ACGGTGAAGGCAGATTATTCTC 58.202 45.455 0.00 0.00 0.00 2.87
2420 2653 3.738281 CGACGGTGAAGGCAGATTATTCT 60.738 47.826 0.00 0.00 0.00 2.40
2421 2654 2.540101 CGACGGTGAAGGCAGATTATTC 59.460 50.000 0.00 0.00 0.00 1.75
2422 2655 2.550978 CGACGGTGAAGGCAGATTATT 58.449 47.619 0.00 0.00 0.00 1.40
2423 2656 1.202533 CCGACGGTGAAGGCAGATTAT 60.203 52.381 5.48 0.00 0.00 1.28
2424 2657 0.174845 CCGACGGTGAAGGCAGATTA 59.825 55.000 5.48 0.00 0.00 1.75
2425 2658 1.079127 CCGACGGTGAAGGCAGATT 60.079 57.895 5.48 0.00 0.00 2.40
2426 2659 2.579201 CCGACGGTGAAGGCAGAT 59.421 61.111 5.48 0.00 0.00 2.90
2439 2672 1.005630 AAGAGAGTGCACTGCCGAC 60.006 57.895 27.27 9.48 0.00 4.79
2441 2674 1.301244 ACAAGAGAGTGCACTGCCG 60.301 57.895 27.27 12.18 0.00 5.69
2478 2711 2.232696 GGCCACTAGCTATAGGAAGAGC 59.767 54.545 14.09 3.71 43.05 4.09
2503 2736 4.980805 TCTGCAACGCACGGGTCC 62.981 66.667 0.00 0.00 33.79 4.46
2736 3050 0.963962 TTGTGGTCGTACTCCAGGAC 59.036 55.000 6.86 0.00 40.59 3.85
2737 3051 1.933021 ATTGTGGTCGTACTCCAGGA 58.067 50.000 6.86 0.00 35.49 3.86
2738 3052 2.762535 AATTGTGGTCGTACTCCAGG 57.237 50.000 6.86 0.00 35.49 4.45
2739 3053 3.617263 GCTTAATTGTGGTCGTACTCCAG 59.383 47.826 6.86 0.00 35.49 3.86
2740 3054 3.592059 GCTTAATTGTGGTCGTACTCCA 58.408 45.455 3.09 3.09 0.00 3.86
2741 3055 2.934553 GGCTTAATTGTGGTCGTACTCC 59.065 50.000 0.00 0.00 0.00 3.85
2742 3056 3.370061 GTGGCTTAATTGTGGTCGTACTC 59.630 47.826 0.00 0.00 0.00 2.59
2743 3057 3.244284 TGTGGCTTAATTGTGGTCGTACT 60.244 43.478 0.00 0.00 0.00 2.73
2744 3058 3.068560 TGTGGCTTAATTGTGGTCGTAC 58.931 45.455 0.00 0.00 0.00 3.67
2810 3124 4.722700 CTTGGCCCTGACCACCGG 62.723 72.222 0.00 0.00 40.19 5.28
2812 3126 2.352805 CTCTTGGCCCTGACCACC 59.647 66.667 0.00 0.00 40.19 4.61
2817 3131 1.792757 ATTGGTGCTCTTGGCCCTGA 61.793 55.000 0.00 0.00 40.92 3.86
2821 3135 0.811281 GTGTATTGGTGCTCTTGGCC 59.189 55.000 0.00 0.00 40.92 5.36
2829 3150 3.505464 ACTCTACTCGTGTATTGGTGC 57.495 47.619 0.00 0.00 0.00 5.01
2854 3183 1.515088 CTCTGCTCGTGTACCAGCG 60.515 63.158 4.61 0.78 38.59 5.18
2857 3188 0.391228 TTTGCTCTGCTCGTGTACCA 59.609 50.000 0.00 0.00 0.00 3.25
2858 3189 1.394917 CATTTGCTCTGCTCGTGTACC 59.605 52.381 0.00 0.00 0.00 3.34
2859 3190 1.394917 CCATTTGCTCTGCTCGTGTAC 59.605 52.381 0.00 0.00 0.00 2.90
2860 3191 1.275010 TCCATTTGCTCTGCTCGTGTA 59.725 47.619 0.00 0.00 0.00 2.90
2861 3192 0.035317 TCCATTTGCTCTGCTCGTGT 59.965 50.000 0.00 0.00 0.00 4.49
2862 3193 0.725686 CTCCATTTGCTCTGCTCGTG 59.274 55.000 0.00 0.00 0.00 4.35
2864 3195 1.022982 TGCTCCATTTGCTCTGCTCG 61.023 55.000 0.00 0.00 0.00 5.03
2866 3197 1.103803 CATGCTCCATTTGCTCTGCT 58.896 50.000 0.00 0.00 0.00 4.24
2869 3200 2.001361 GCGCATGCTCCATTTGCTCT 62.001 55.000 17.13 0.00 38.39 4.09
2872 3203 2.672908 ATCGCGCATGCTCCATTTGC 62.673 55.000 17.13 8.76 39.65 3.68
2922 3265 1.135083 GCTCATGTACAGCCACTACGT 60.135 52.381 0.33 0.00 0.00 3.57
2924 3267 1.560923 CGCTCATGTACAGCCACTAC 58.439 55.000 0.33 0.00 32.83 2.73
2925 3268 0.459899 CCGCTCATGTACAGCCACTA 59.540 55.000 0.33 0.00 32.83 2.74
2926 3269 1.219124 CCGCTCATGTACAGCCACT 59.781 57.895 0.33 0.00 32.83 4.00
2959 3302 1.271102 TGCACGTTTTAATTCCAGCCC 59.729 47.619 0.00 0.00 0.00 5.19
3010 3390 1.080298 GCATGTGGGCTTGCTGTTC 60.080 57.895 0.00 0.00 41.05 3.18
3014 3394 3.294750 CATGCATGTGGGCTTGCT 58.705 55.556 18.91 0.00 43.58 3.91
3017 3397 1.601419 GAGTGCATGCATGTGGGCTT 61.601 55.000 25.64 8.06 34.04 4.35
3031 3411 2.512515 CTTGCTAGCGGGGAGTGC 60.513 66.667 10.77 0.00 0.00 4.40
3050 3430 2.043248 GTGTCCCTCCCTAGCGGA 60.043 66.667 0.71 0.71 38.83 5.54
3051 3431 3.155167 GGTGTCCCTCCCTAGCGG 61.155 72.222 0.00 0.00 0.00 5.52
3052 3432 2.363795 TGGTGTCCCTCCCTAGCG 60.364 66.667 0.00 0.00 0.00 4.26
3053 3433 2.368011 GGTGGTGTCCCTCCCTAGC 61.368 68.421 0.00 0.00 38.28 3.42
3054 3434 1.080354 TGGTGGTGTCCCTCCCTAG 59.920 63.158 0.00 0.00 42.72 3.02
3055 3435 1.229400 GTGGTGGTGTCCCTCCCTA 60.229 63.158 0.00 0.00 42.72 3.53
3056 3436 2.529389 GTGGTGGTGTCCCTCCCT 60.529 66.667 0.00 0.00 42.72 4.20
3057 3437 2.002018 TTTGTGGTGGTGTCCCTCCC 62.002 60.000 0.00 0.00 42.72 4.30
3058 3438 0.112412 ATTTGTGGTGGTGTCCCTCC 59.888 55.000 0.00 0.00 43.51 4.30
3059 3439 1.886542 GAATTTGTGGTGGTGTCCCTC 59.113 52.381 0.00 0.00 0.00 4.30
3097 3491 4.156922 GGTATGGATAGATCTCCGTCACAG 59.843 50.000 0.00 0.00 38.21 3.66
3098 3492 4.079970 GGTATGGATAGATCTCCGTCACA 58.920 47.826 0.00 0.00 38.21 3.58
3099 3493 4.079970 TGGTATGGATAGATCTCCGTCAC 58.920 47.826 0.00 0.00 38.21 3.67
3100 3494 4.382386 TGGTATGGATAGATCTCCGTCA 57.618 45.455 0.00 0.00 38.21 4.35
3101 3495 4.339814 GGATGGTATGGATAGATCTCCGTC 59.660 50.000 0.00 3.19 38.21 4.79
3103 3497 4.281657 TGGATGGTATGGATAGATCTCCG 58.718 47.826 0.00 0.00 38.21 4.63
3104 3498 5.454471 GCATGGATGGTATGGATAGATCTCC 60.454 48.000 0.00 0.00 35.74 3.71
3105 3499 5.129980 TGCATGGATGGTATGGATAGATCTC 59.870 44.000 0.00 0.00 0.00 2.75
3106 3500 5.034878 TGCATGGATGGTATGGATAGATCT 58.965 41.667 0.00 0.00 0.00 2.75
3107 3501 5.363562 TGCATGGATGGTATGGATAGATC 57.636 43.478 0.00 0.00 0.00 2.75
3108 3502 5.670818 AGATGCATGGATGGTATGGATAGAT 59.329 40.000 2.46 0.00 36.83 1.98
3109 3503 5.034878 AGATGCATGGATGGTATGGATAGA 58.965 41.667 2.46 0.00 36.83 1.98
3110 3504 5.369409 AGATGCATGGATGGTATGGATAG 57.631 43.478 2.46 0.00 36.83 2.08
3111 3505 5.163269 GCTAGATGCATGGATGGTATGGATA 60.163 44.000 2.46 0.00 36.83 2.59
3112 3506 4.384978 GCTAGATGCATGGATGGTATGGAT 60.385 45.833 2.46 0.00 38.97 3.41
3113 3507 3.054875 GCTAGATGCATGGATGGTATGGA 60.055 47.826 2.46 0.00 42.31 3.41
3114 3508 3.276857 GCTAGATGCATGGATGGTATGG 58.723 50.000 2.46 0.00 42.31 2.74
3115 3509 3.276857 GGCTAGATGCATGGATGGTATG 58.723 50.000 2.46 0.00 45.15 2.39
3116 3510 2.914941 TGGCTAGATGCATGGATGGTAT 59.085 45.455 2.46 0.00 45.15 2.73
3117 3511 2.303890 CTGGCTAGATGCATGGATGGTA 59.696 50.000 2.46 0.00 45.15 3.25
3146 3540 9.365906 ACAGCTAGTGAGATAGTACTACTAGTA 57.634 37.037 22.19 1.89 41.62 1.82
3147 3541 8.253867 ACAGCTAGTGAGATAGTACTACTAGT 57.746 38.462 22.19 0.00 41.62 2.57
3148 3542 7.816031 GGACAGCTAGTGAGATAGTACTACTAG 59.184 44.444 19.18 19.18 42.18 2.57
3188 3582 5.694458 CCATGTGCTAGCAATTATACGTACA 59.306 40.000 21.29 9.42 0.00 2.90
3189 3583 5.389516 GCCATGTGCTAGCAATTATACGTAC 60.390 44.000 21.29 3.15 36.87 3.67
3190 3584 4.688879 GCCATGTGCTAGCAATTATACGTA 59.311 41.667 21.29 0.00 36.87 3.57
3191 3585 3.498397 GCCATGTGCTAGCAATTATACGT 59.502 43.478 21.29 4.16 36.87 3.57
3192 3586 4.070581 GCCATGTGCTAGCAATTATACG 57.929 45.455 21.29 8.87 36.87 3.06
3239 3633 2.335712 GGTGGTTGCAGCTACTGGC 61.336 63.158 16.18 0.00 42.19 4.85
3240 3634 0.674895 GAGGTGGTTGCAGCTACTGG 60.675 60.000 16.18 0.00 32.51 4.00
3241 3635 0.674895 GGAGGTGGTTGCAGCTACTG 60.675 60.000 16.18 0.00 32.51 2.74
3242 3636 1.127567 TGGAGGTGGTTGCAGCTACT 61.128 55.000 16.18 4.64 34.76 2.57
3243 3637 0.250727 TTGGAGGTGGTTGCAGCTAC 60.251 55.000 8.59 8.59 34.29 3.58
3244 3638 0.250727 GTTGGAGGTGGTTGCAGCTA 60.251 55.000 0.00 0.00 32.51 3.32
3245 3639 1.529244 GTTGGAGGTGGTTGCAGCT 60.529 57.895 0.00 0.00 35.39 4.24
3248 3642 0.105760 ATTGGTTGGAGGTGGTTGCA 60.106 50.000 0.00 0.00 0.00 4.08
3254 3648 0.881118 CGGTTGATTGGTTGGAGGTG 59.119 55.000 0.00 0.00 0.00 4.00
3285 3679 7.151976 GCCGGGTTAATTAATTAAATGATGCT 58.848 34.615 19.67 0.00 34.36 3.79
3290 3684 5.543714 GGGGCCGGGTTAATTAATTAAATG 58.456 41.667 19.67 12.91 34.36 2.32
3291 3685 4.281435 CGGGGCCGGGTTAATTAATTAAAT 59.719 41.667 19.67 0.00 33.61 1.40
3292 3686 3.635836 CGGGGCCGGGTTAATTAATTAAA 59.364 43.478 19.67 4.58 33.61 1.52
3293 3687 3.220940 CGGGGCCGGGTTAATTAATTAA 58.779 45.455 15.19 15.19 35.56 1.40
3294 3688 2.174424 ACGGGGCCGGGTTAATTAATTA 59.826 45.455 16.11 3.71 44.69 1.40
3295 3689 1.063792 ACGGGGCCGGGTTAATTAATT 60.064 47.619 16.11 5.89 44.69 1.40
3297 3691 1.207791 TACGGGGCCGGGTTAATTAA 58.792 50.000 16.11 0.00 44.69 1.40
3298 3692 1.433121 ATACGGGGCCGGGTTAATTA 58.567 50.000 16.11 0.00 44.69 1.40
3305 3729 2.345991 CACATATACGGGGCCGGG 59.654 66.667 16.11 3.70 44.69 5.73
3352 3781 1.075601 ATGGTTCAAAGCCCTCAGGA 58.924 50.000 0.00 0.00 33.47 3.86
3356 3785 5.221641 ACCTTTTTAATGGTTCAAAGCCCTC 60.222 40.000 0.00 0.00 33.06 4.30
3367 3796 7.657354 GCATTCTCTTTTGACCTTTTTAATGGT 59.343 33.333 0.10 0.10 38.96 3.55
3368 3797 7.874528 AGCATTCTCTTTTGACCTTTTTAATGG 59.125 33.333 0.00 0.00 0.00 3.16
3383 3817 6.206634 TCACAAATTAACCGAGCATTCTCTTT 59.793 34.615 0.00 0.00 37.19 2.52
3391 3825 3.004944 GGGTTTCACAAATTAACCGAGCA 59.995 43.478 0.00 0.00 41.75 4.26
3393 3827 4.320935 CCTGGGTTTCACAAATTAACCGAG 60.321 45.833 10.55 10.55 43.35 4.63
3398 3832 5.359194 TTTGCCTGGGTTTCACAAATTAA 57.641 34.783 0.00 0.00 0.00 1.40
3405 3839 4.600692 ACTATTTTTGCCTGGGTTTCAC 57.399 40.909 0.00 0.00 0.00 3.18
3407 3841 6.340962 AGTAACTATTTTTGCCTGGGTTTC 57.659 37.500 0.00 0.00 0.00 2.78
3415 3854 7.563020 ACTACTCCCTAGTAACTATTTTTGCC 58.437 38.462 0.00 0.00 37.75 4.52
3430 3869 5.773680 GGCAGATGTATTGTACTACTCCCTA 59.226 44.000 0.00 0.00 0.00 3.53
3434 3873 6.019801 CGTTTGGCAGATGTATTGTACTACTC 60.020 42.308 0.00 0.00 0.00 2.59
3435 3874 5.810587 CGTTTGGCAGATGTATTGTACTACT 59.189 40.000 0.00 0.00 0.00 2.57
3437 3876 4.569162 GCGTTTGGCAGATGTATTGTACTA 59.431 41.667 0.00 0.00 42.87 1.82
3438 3877 3.374058 GCGTTTGGCAGATGTATTGTACT 59.626 43.478 0.00 0.00 42.87 2.73
3440 3879 2.350192 CGCGTTTGGCAGATGTATTGTA 59.650 45.455 0.00 0.00 43.84 2.41
3442 3881 1.130373 ACGCGTTTGGCAGATGTATTG 59.870 47.619 5.58 0.00 43.84 1.90
3443 3882 1.396996 GACGCGTTTGGCAGATGTATT 59.603 47.619 15.53 0.00 43.84 1.89
3447 3886 0.453282 CTTGACGCGTTTGGCAGATG 60.453 55.000 15.53 0.00 43.84 2.90
3448 3887 0.602638 TCTTGACGCGTTTGGCAGAT 60.603 50.000 15.53 0.00 43.84 2.90
3449 3888 0.812014 TTCTTGACGCGTTTGGCAGA 60.812 50.000 15.53 7.93 43.84 4.26
3451 3890 0.237235 GATTCTTGACGCGTTTGGCA 59.763 50.000 15.53 3.08 43.84 4.92
3452 3891 0.789383 CGATTCTTGACGCGTTTGGC 60.789 55.000 15.53 0.00 38.69 4.52
3453 3892 0.179225 CCGATTCTTGACGCGTTTGG 60.179 55.000 15.53 5.61 0.00 3.28
3454 3893 0.179225 CCCGATTCTTGACGCGTTTG 60.179 55.000 15.53 6.99 0.00 2.93
3455 3894 1.908066 GCCCGATTCTTGACGCGTTT 61.908 55.000 15.53 0.00 0.00 3.60
3457 3896 2.813908 GCCCGATTCTTGACGCGT 60.814 61.111 13.85 13.85 0.00 6.01
3459 3898 1.353103 CATGCCCGATTCTTGACGC 59.647 57.895 0.00 0.00 0.00 5.19
3462 3901 1.134007 AGATGCATGCCCGATTCTTGA 60.134 47.619 16.68 0.00 0.00 3.02
3464 3903 2.936919 TAGATGCATGCCCGATTCTT 57.063 45.000 16.68 0.00 0.00 2.52
3466 3905 2.417933 GACATAGATGCATGCCCGATTC 59.582 50.000 16.68 4.50 0.00 2.52
3467 3906 2.430465 GACATAGATGCATGCCCGATT 58.570 47.619 16.68 0.00 0.00 3.34
3468 3907 1.673923 CGACATAGATGCATGCCCGAT 60.674 52.381 16.68 1.15 31.16 4.18
3470 3909 0.601046 ACGACATAGATGCATGCCCG 60.601 55.000 16.68 8.05 33.91 6.13
3472 3911 0.870393 CCACGACATAGATGCATGCC 59.130 55.000 16.68 0.00 0.00 4.40
3473 3912 1.586422 ACCACGACATAGATGCATGC 58.414 50.000 11.82 11.82 0.00 4.06
3477 3916 4.430007 TCTTGTTACCACGACATAGATGC 58.570 43.478 0.00 0.00 0.00 3.91
3478 3917 5.520288 CCTTCTTGTTACCACGACATAGATG 59.480 44.000 0.00 0.00 0.00 2.90
3479 3918 5.395324 CCCTTCTTGTTACCACGACATAGAT 60.395 44.000 0.00 0.00 0.00 1.98
3480 3919 4.081862 CCCTTCTTGTTACCACGACATAGA 60.082 45.833 0.00 0.00 0.00 1.98
3485 4089 2.036862 ACTCCCTTCTTGTTACCACGAC 59.963 50.000 0.00 0.00 0.00 4.34
3490 4094 2.685100 CGTCACTCCCTTCTTGTTACC 58.315 52.381 0.00 0.00 0.00 2.85
3491 4095 2.067013 GCGTCACTCCCTTCTTGTTAC 58.933 52.381 0.00 0.00 0.00 2.50
3502 4106 2.049802 TTTCCGACGCGTCACTCC 60.050 61.111 35.71 12.43 0.00 3.85
3503 4107 2.370393 GGTTTCCGACGCGTCACTC 61.370 63.158 35.71 20.50 0.00 3.51
3512 4116 2.608090 GTGCTATTGCTAGGTTTCCGAC 59.392 50.000 0.00 0.00 40.48 4.79
3515 4119 2.092375 AGGGTGCTATTGCTAGGTTTCC 60.092 50.000 0.00 0.00 40.48 3.13
3522 4126 2.171870 GGTTACCAGGGTGCTATTGCTA 59.828 50.000 0.06 0.00 40.48 3.49
3527 4131 0.325860 TCCGGTTACCAGGGTGCTAT 60.326 55.000 0.00 0.00 0.00 2.97
3528 4132 0.325860 ATCCGGTTACCAGGGTGCTA 60.326 55.000 0.00 0.00 0.00 3.49
3533 4172 2.203015 CGCATCCGGTTACCAGGG 60.203 66.667 0.00 0.00 0.00 4.45
3646 4294 3.188786 CTGCCGCCGCTGTTAGTC 61.189 66.667 0.00 0.00 35.36 2.59
3746 4394 1.153568 CTCTTGGCGCTGATCGGAA 60.154 57.895 7.64 0.00 38.94 4.30
3837 4493 6.254804 CGACAAATTGACACCGACTTCATATA 59.745 38.462 0.00 0.00 0.00 0.86
3838 4494 5.063438 CGACAAATTGACACCGACTTCATAT 59.937 40.000 0.00 0.00 0.00 1.78
3839 4495 4.387559 CGACAAATTGACACCGACTTCATA 59.612 41.667 0.00 0.00 0.00 2.15
3841 4497 2.542178 CGACAAATTGACACCGACTTCA 59.458 45.455 0.00 0.00 0.00 3.02
3962 4632 1.753078 ATGCCATGCAGCCTGTGAG 60.753 57.895 0.00 0.00 43.65 3.51
4066 4740 0.603439 GTGTTTTTGGGCCAGCCATG 60.603 55.000 6.23 0.00 37.98 3.66
4071 4745 3.716601 CTTAACTGTGTTTTTGGGCCAG 58.283 45.455 6.23 0.00 0.00 4.85
4087 4770 3.682377 GCTGTCTCTTTCCTCAGCTTAAC 59.318 47.826 8.46 0.00 46.35 2.01
4107 4790 1.238439 CCACAACGAATGAACAGGCT 58.762 50.000 0.00 0.00 0.00 4.58
4134 4817 4.621034 CCGGTGCATTTAGATTTTTCACAC 59.379 41.667 0.00 0.00 0.00 3.82
4156 4839 5.357257 TCATATACGCAACCTTCTTCTTCC 58.643 41.667 0.00 0.00 0.00 3.46
4158 4841 7.727181 AGTATCATATACGCAACCTTCTTCTT 58.273 34.615 0.00 0.00 0.00 2.52
4196 4879 3.786553 AGTGTACCATCTTGACTGGGTA 58.213 45.455 0.00 0.00 38.14 3.69
4198 4881 4.759782 CTTAGTGTACCATCTTGACTGGG 58.240 47.826 0.00 0.00 38.14 4.45
4386 5341 1.281867 CCCTACCTCAAGATGCAACCA 59.718 52.381 0.00 0.00 0.00 3.67
4406 5361 5.070770 TCCAACATATGCATGTGGAAAAC 57.929 39.130 24.94 0.00 44.83 2.43
4440 5395 6.367969 GGACATTAGTTATTACCTATGCCGTG 59.632 42.308 0.00 0.00 0.00 4.94
4442 5397 6.460781 TGGACATTAGTTATTACCTATGCCG 58.539 40.000 0.00 0.00 0.00 5.69
4443 5398 7.883311 ACATGGACATTAGTTATTACCTATGCC 59.117 37.037 0.00 0.00 0.00 4.40
4446 5401 9.284968 GCAACATGGACATTAGTTATTACCTAT 57.715 33.333 0.00 0.00 0.00 2.57
4448 5403 7.116075 TGCAACATGGACATTAGTTATTACCT 58.884 34.615 0.00 0.00 0.00 3.08
4449 5404 7.328277 TGCAACATGGACATTAGTTATTACC 57.672 36.000 0.00 0.00 0.00 2.85
4450 5405 9.450807 GAATGCAACATGGACATTAGTTATTAC 57.549 33.333 9.30 0.00 34.28 1.89
4468 5423 2.916716 CTGCAACATTACCGAATGCAAC 59.083 45.455 0.00 0.00 45.52 4.17
4469 5424 2.670789 GCTGCAACATTACCGAATGCAA 60.671 45.455 0.00 0.00 45.52 4.08
4470 5425 1.135431 GCTGCAACATTACCGAATGCA 60.135 47.619 0.00 0.00 45.52 3.96
4471 5426 1.133025 AGCTGCAACATTACCGAATGC 59.867 47.619 1.02 0.00 45.52 3.56
4472 5427 2.162208 ACAGCTGCAACATTACCGAATG 59.838 45.455 15.27 0.00 46.77 2.67
4473 5428 2.162208 CACAGCTGCAACATTACCGAAT 59.838 45.455 15.27 0.00 0.00 3.34
4474 5429 1.535028 CACAGCTGCAACATTACCGAA 59.465 47.619 15.27 0.00 0.00 4.30
4475 5430 1.155889 CACAGCTGCAACATTACCGA 58.844 50.000 15.27 0.00 0.00 4.69
4477 5432 1.068333 CACCACAGCTGCAACATTACC 60.068 52.381 15.27 0.00 0.00 2.85
4524 5499 3.554692 GCCGCGTTCTCGATGGTG 61.555 66.667 4.92 0.00 39.71 4.17
4605 5580 2.103042 GTAGCCCACGAAGCTGCAG 61.103 63.158 10.11 10.11 41.93 4.41
4758 5733 3.368013 CCGTGTAGATGTTGCTCTGGTTA 60.368 47.826 0.00 0.00 0.00 2.85
4794 5769 1.228459 GGTGTTCTGGTTGGGGTCC 60.228 63.158 0.00 0.00 0.00 4.46
4923 5898 0.248825 CGAGCTCCGACTGGATGAAG 60.249 60.000 8.47 0.00 45.33 3.02
5004 5979 2.615912 GTTCTGGTACTCGGCGTAGTAT 59.384 50.000 17.64 0.79 34.59 2.12
5076 6051 1.143838 AGACGCGCTAATGATGCCA 59.856 52.632 5.73 0.00 0.00 4.92
5163 6138 2.046314 CACAACCCGCCGGAGAAT 60.046 61.111 5.05 0.00 0.00 2.40
5253 6238 1.078143 AAGAATCAGGCAGGCGTCC 60.078 57.895 0.00 0.00 0.00 4.79
5257 6242 4.967036 ACTAATAGAAGAATCAGGCAGGC 58.033 43.478 0.00 0.00 0.00 4.85
5306 6292 4.438148 ACCAAACACATAAGCCACAAAAC 58.562 39.130 0.00 0.00 0.00 2.43
5392 6567 9.498307 ACGTGTCAAAACTAAAATAAACAGAAG 57.502 29.630 0.00 0.00 0.00 2.85
5494 6671 4.883354 CTGAGCCCCAATCCGCCC 62.883 72.222 0.00 0.00 0.00 6.13
5527 6705 3.708451 TGATACTGGAAGAGCTGTACCA 58.292 45.455 0.00 0.00 37.43 3.25
5530 6708 8.635765 AAAAATTTGATACTGGAAGAGCTGTA 57.364 30.769 0.00 0.00 37.43 2.74
5534 6712 7.857885 CCGATAAAAATTTGATACTGGAAGAGC 59.142 37.037 0.00 0.00 37.43 4.09
5543 6721 9.093970 CCCCTTTTTCCGATAAAAATTTGATAC 57.906 33.333 8.27 0.00 0.00 2.24
5549 6727 5.755409 AGCCCCTTTTTCCGATAAAAATT 57.245 34.783 8.27 0.00 0.00 1.82
5550 6728 5.012664 ACAAGCCCCTTTTTCCGATAAAAAT 59.987 36.000 8.27 0.00 0.00 1.82
5551 6729 4.345547 ACAAGCCCCTTTTTCCGATAAAAA 59.654 37.500 7.75 7.75 0.00 1.94
5554 6732 2.823154 CACAAGCCCCTTTTTCCGATAA 59.177 45.455 0.00 0.00 0.00 1.75
5557 6735 0.106419 ACACAAGCCCCTTTTTCCGA 60.106 50.000 0.00 0.00 0.00 4.55
5558 6736 0.750249 AACACAAGCCCCTTTTTCCG 59.250 50.000 0.00 0.00 0.00 4.30
5567 7658 2.633488 GAGTATCTCCAACACAAGCCC 58.367 52.381 0.00 0.00 0.00 5.19
5628 7719 6.036083 CCACAAGAGATATGTGTCGTTAAAGG 59.964 42.308 5.99 0.00 45.23 3.11
5646 7742 2.047061 AGTACAGCCAGAACCACAAGA 58.953 47.619 0.00 0.00 0.00 3.02
5649 7745 3.129813 CGTATAGTACAGCCAGAACCACA 59.870 47.826 0.00 0.00 0.00 4.17
5671 7767 0.804989 CTGTCCTGATTCGGGCAAAC 59.195 55.000 6.66 1.01 38.39 2.93
5676 7772 0.178767 TGATGCTGTCCTGATTCGGG 59.821 55.000 5.04 5.04 0.00 5.14
5677 7773 1.293924 GTGATGCTGTCCTGATTCGG 58.706 55.000 0.00 0.00 0.00 4.30
5690 7786 3.403038 AGGTCAAATATAGCCGTGATGC 58.597 45.455 0.00 0.00 0.00 3.91
5702 7798 3.627395 ATCACAAGCGGAGGTCAAATA 57.373 42.857 0.00 0.00 37.06 1.40
5703 7799 2.496899 ATCACAAGCGGAGGTCAAAT 57.503 45.000 0.00 0.00 37.06 2.32
5707 7803 2.094182 TGTTCTATCACAAGCGGAGGTC 60.094 50.000 0.00 0.00 37.06 3.85
5743 7839 6.349528 CCATAGCATGTCTGTGATGTCAAAAA 60.350 38.462 12.94 0.00 36.15 1.94
5755 7851 2.989909 TGGTGAACCATAGCATGTCTG 58.010 47.619 0.00 0.00 42.01 3.51
5766 7862 1.900981 CGGGCATTGTGGTGAACCA 60.901 57.895 0.00 0.00 45.30 3.67
5767 7863 1.175983 TTCGGGCATTGTGGTGAACC 61.176 55.000 0.00 0.00 0.00 3.62
5781 7877 7.433708 TGCATATATGTTCAATAAGTTCGGG 57.566 36.000 14.14 0.00 0.00 5.14
5782 7878 8.506437 ACATGCATATATGTTCAATAAGTTCGG 58.494 33.333 14.14 0.00 38.05 4.30
5783 7879 9.882996 AACATGCATATATGTTCAATAAGTTCG 57.117 29.630 14.14 0.00 45.49 3.95
5795 7891 8.498358 CGTGATTCTAACAACATGCATATATGT 58.502 33.333 14.14 1.85 42.82 2.29
5824 7920 3.315470 TGATTACTCCTCTTCGACGGATG 59.685 47.826 0.00 0.00 0.00 3.51
5831 7927 3.614616 GCTTGTGTGATTACTCCTCTTCG 59.385 47.826 0.00 0.00 0.00 3.79
5837 7933 4.065088 TCTTGTGCTTGTGTGATTACTCC 58.935 43.478 0.00 0.00 0.00 3.85
5852 7948 5.391312 AATCTGGGTATTGTTTCTTGTGC 57.609 39.130 0.00 0.00 0.00 4.57
5895 8004 2.354821 GAGAAACGTGTAATCATGCCCC 59.645 50.000 0.00 0.00 34.22 5.80
5904 8013 5.717078 AGTACATGGAGAGAAACGTGTAA 57.283 39.130 0.00 0.00 39.85 2.41
5905 8014 6.624423 GCTTAGTACATGGAGAGAAACGTGTA 60.624 42.308 0.00 0.00 37.88 2.90
5909 8018 5.000012 AGCTTAGTACATGGAGAGAAACG 58.000 43.478 0.00 0.00 0.00 3.60
5910 8019 5.967088 TGAGCTTAGTACATGGAGAGAAAC 58.033 41.667 0.00 0.00 0.00 2.78
5911 8020 5.717178 ACTGAGCTTAGTACATGGAGAGAAA 59.283 40.000 9.81 0.00 0.00 2.52
5912 8021 5.126222 CACTGAGCTTAGTACATGGAGAGAA 59.874 44.000 11.29 0.00 0.00 2.87
5913 8022 4.642437 CACTGAGCTTAGTACATGGAGAGA 59.358 45.833 11.29 0.00 0.00 3.10
5914 8023 4.642437 TCACTGAGCTTAGTACATGGAGAG 59.358 45.833 11.29 0.00 0.00 3.20
5920 8029 2.432510 GGCCTCACTGAGCTTAGTACAT 59.567 50.000 11.29 0.00 0.00 2.29
5921 8030 1.825474 GGCCTCACTGAGCTTAGTACA 59.175 52.381 11.29 0.15 0.00 2.90
5922 8031 1.825474 TGGCCTCACTGAGCTTAGTAC 59.175 52.381 11.29 1.60 0.00 2.73
5925 8034 1.483827 TGATGGCCTCACTGAGCTTAG 59.516 52.381 3.32 3.53 0.00 2.18
5931 8053 0.900421 CTGTCTGATGGCCTCACTGA 59.100 55.000 3.32 2.15 0.00 3.41
5933 8055 0.546267 ACCTGTCTGATGGCCTCACT 60.546 55.000 3.32 0.00 0.00 3.41
5934 8056 0.326264 AACCTGTCTGATGGCCTCAC 59.674 55.000 3.32 0.00 0.00 3.51
5981 8103 2.280552 TACTCGTGGCAGGGGTGAC 61.281 63.158 22.19 0.00 0.00 3.67
5982 8104 2.118732 TACTCGTGGCAGGGGTGA 59.881 61.111 22.19 4.34 0.00 4.02
5983 8105 2.264794 GTACTCGTGGCAGGGGTG 59.735 66.667 22.19 8.32 0.00 4.61
6005 8127 3.446161 ACAAATATCACGAGAGGAACGGA 59.554 43.478 0.00 0.00 34.93 4.69
6010 8132 4.382685 GGTTGGACAAATATCACGAGAGGA 60.383 45.833 0.00 0.00 0.00 3.71
6012 8134 4.759782 AGGTTGGACAAATATCACGAGAG 58.240 43.478 0.00 0.00 0.00 3.20
6057 8179 9.729550 ATTATATAAGGGCATCATAGGTAGTCA 57.270 33.333 1.02 0.00 0.00 3.41
6062 8184 8.440771 GGCTTATTATATAAGGGCATCATAGGT 58.559 37.037 14.60 0.00 0.00 3.08
6063 8185 7.885399 GGGCTTATTATATAAGGGCATCATAGG 59.115 40.741 15.73 0.23 0.00 2.57
6064 8186 7.604164 CGGGCTTATTATATAAGGGCATCATAG 59.396 40.741 15.73 0.00 0.00 2.23
6065 8187 7.450074 CGGGCTTATTATATAAGGGCATCATA 58.550 38.462 15.73 0.00 0.00 2.15
6066 8188 6.299141 CGGGCTTATTATATAAGGGCATCAT 58.701 40.000 15.73 0.00 0.00 2.45
6067 8189 5.397447 CCGGGCTTATTATATAAGGGCATCA 60.397 44.000 15.73 0.00 0.00 3.07
6068 8190 5.063880 CCGGGCTTATTATATAAGGGCATC 58.936 45.833 15.73 8.98 0.00 3.91
6069 8191 4.477213 ACCGGGCTTATTATATAAGGGCAT 59.523 41.667 6.32 0.00 0.00 4.40
6088 8210 2.094182 AGTGTAGAGCATGTGTAACCGG 60.094 50.000 0.00 0.00 34.36 5.28
6101 8224 6.091437 CGAAGGGTTAACTGTTAGTGTAGAG 58.909 44.000 5.42 0.00 0.00 2.43
6107 8230 4.347360 AAGCGAAGGGTTAACTGTTAGT 57.653 40.909 5.42 0.00 30.73 2.24
6126 8249 6.649141 TGTGCTACAGTTGGACTTGTAATAAG 59.351 38.462 8.04 0.00 0.00 1.73
6139 8262 2.549329 TGCATGAGTTGTGCTACAGTTG 59.451 45.455 0.00 0.00 42.92 3.16
6143 8266 2.252976 TGTGCATGAGTTGTGCTACA 57.747 45.000 0.00 0.60 42.92 2.74
6145 8268 7.806409 AATATTATGTGCATGAGTTGTGCTA 57.194 32.000 0.00 0.00 42.92 3.49
6148 8271 9.786105 TGTAAAATATTATGTGCATGAGTTGTG 57.214 29.630 0.00 0.00 0.00 3.33
6150 8273 9.786105 TGTGTAAAATATTATGTGCATGAGTTG 57.214 29.630 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.