Multiple sequence alignment - TraesCS5A01G043700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G043700 chr5A 100.000 6535 0 0 431 6965 40097219 40103753 0.000000e+00 12068.0
1 TraesCS5A01G043700 chr5A 100.000 193 0 0 1 193 40096789 40096981 2.390000e-94 357.0
2 TraesCS5A01G043700 chr5A 88.770 187 20 1 6778 6964 633148710 633148525 1.950000e-55 228.0
3 TraesCS5A01G043700 chr5A 88.235 85 10 0 3482 3566 401747906 401747990 1.240000e-17 102.0
4 TraesCS5A01G043700 chr5A 95.238 63 3 0 1 63 474540475 474540537 4.450000e-17 100.0
5 TraesCS5A01G043700 chr5D 97.703 5138 92 14 431 5549 50777385 50782515 0.000000e+00 8811.0
6 TraesCS5A01G043700 chr5D 92.607 514 27 8 5790 6293 50782514 50783026 0.000000e+00 728.0
7 TraesCS5A01G043700 chr5D 97.973 148 3 0 5639 5786 421386205 421386352 2.490000e-64 257.0
8 TraesCS5A01G043700 chr5D 90.000 160 15 1 6800 6959 443659223 443659065 9.160000e-49 206.0
9 TraesCS5A01G043700 chr5D 96.629 89 3 0 60 148 50776937 50777025 1.570000e-31 148.0
10 TraesCS5A01G043700 chr5D 89.412 85 9 0 3482 3566 297499910 297499826 2.660000e-19 108.0
11 TraesCS5A01G043700 chr5D 92.754 69 5 0 1 69 249066190 249066122 4.450000e-17 100.0
12 TraesCS5A01G043700 chr5B 97.871 4086 77 8 874 4954 53657172 53661252 0.000000e+00 7055.0
13 TraesCS5A01G043700 chr5B 91.424 583 22 7 4971 5549 53661941 53662499 0.000000e+00 774.0
14 TraesCS5A01G043700 chr5B 95.928 442 16 2 432 873 53656590 53657029 0.000000e+00 715.0
15 TraesCS5A01G043700 chr5B 93.913 460 23 4 5790 6246 53662498 53662955 0.000000e+00 689.0
16 TraesCS5A01G043700 chr5B 94.664 431 21 2 6293 6723 53667212 53667640 0.000000e+00 667.0
17 TraesCS5A01G043700 chr5B 97.403 154 3 1 5640 5792 610350114 610350267 1.930000e-65 261.0
18 TraesCS5A01G043700 chr5B 98.039 102 2 0 60 161 53656090 53656191 2.000000e-40 178.0
19 TraesCS5A01G043700 chr5B 78.279 244 51 2 6437 6679 227499762 227499520 9.350000e-34 156.0
20 TraesCS5A01G043700 chr5B 88.172 93 9 2 3475 3566 565770472 565770563 7.390000e-20 110.0
21 TraesCS5A01G043700 chr5B 88.235 85 9 1 3482 3566 337831161 337831078 4.450000e-17 100.0
22 TraesCS5A01G043700 chr5B 93.846 65 4 0 1 65 287752599 287752663 1.600000e-16 99.0
23 TraesCS5A01G043700 chr5B 97.917 48 1 0 6246 6293 53667087 53667134 4.480000e-12 84.2
24 TraesCS5A01G043700 chr6B 85.781 429 54 5 6293 6719 163798982 163799405 1.380000e-121 448.0
25 TraesCS5A01G043700 chr6B 89.524 105 10 1 6811 6915 704458221 704458118 1.580000e-26 132.0
26 TraesCS5A01G043700 chr4A 95.142 247 12 0 6719 6965 643422900 643423146 2.360000e-104 390.0
27 TraesCS5A01G043700 chr7B 99.315 146 1 0 5640 5785 129963678 129963823 1.490000e-66 265.0
28 TraesCS5A01G043700 chr7D 99.310 145 1 0 5640 5784 433896421 433896565 5.360000e-66 263.0
29 TraesCS5A01G043700 chr7D 98.387 62 1 0 1 62 467922570 467922509 7.390000e-20 110.0
30 TraesCS5A01G043700 chr6D 91.710 193 10 2 6779 6965 70916 71108 5.360000e-66 263.0
31 TraesCS5A01G043700 chr6D 87.500 72 9 0 5213 5284 26243079 26243008 4.480000e-12 84.2
32 TraesCS5A01G043700 chrUn 99.306 144 1 0 5639 5782 175473844 175473987 1.930000e-65 261.0
33 TraesCS5A01G043700 chrUn 87.634 186 22 1 6778 6963 323278840 323279024 1.520000e-51 215.0
34 TraesCS5A01G043700 chrUn 92.683 41 3 0 5244 5284 299117512 299117552 7.540000e-05 60.2
35 TraesCS5A01G043700 chr2D 98.649 148 1 1 5640 5787 16014910 16014764 1.930000e-65 261.0
36 TraesCS5A01G043700 chr2D 96.774 62 2 0 1 62 641069863 641069924 3.440000e-18 104.0
37 TraesCS5A01G043700 chr2D 95.161 62 3 0 1 62 528438307 528438246 1.600000e-16 99.0
38 TraesCS5A01G043700 chr2D 91.379 58 4 1 6228 6284 434676982 434676925 2.080000e-10 78.7
39 TraesCS5A01G043700 chr3D 97.987 149 3 0 5640 5788 3542028 3541880 6.930000e-65 259.0
40 TraesCS5A01G043700 chr1B 98.639 147 1 1 5639 5784 109870854 109871000 6.930000e-65 259.0
41 TraesCS5A01G043700 chr1B 91.617 167 12 2 6799 6965 483376566 483376402 5.430000e-56 230.0
42 TraesCS5A01G043700 chr1B 88.462 78 7 1 5215 5292 446029276 446029201 7.440000e-15 93.5
43 TraesCS5A01G043700 chr3B 95.455 154 7 0 5640 5793 778300804 778300957 5.400000e-61 246.0
44 TraesCS5A01G043700 chr3B 88.764 89 10 0 3478 3566 113517569 113517657 7.390000e-20 110.0
45 TraesCS5A01G043700 chr3B 84.536 97 15 0 3473 3569 126580158 126580062 5.750000e-16 97.1
46 TraesCS5A01G043700 chr6A 86.559 186 21 3 6778 6963 432534761 432534942 1.180000e-47 202.0
47 TraesCS5A01G043700 chr6A 98.413 63 1 0 3 65 475259508 475259446 2.050000e-20 111.0
48 TraesCS5A01G043700 chr6A 96.825 63 2 0 1 63 103761923 103761985 9.550000e-19 106.0
49 TraesCS5A01G043700 chr6A 92.683 41 3 0 5244 5284 307965649 307965689 7.540000e-05 60.2
50 TraesCS5A01G043700 chr6A 92.683 41 3 0 5244 5284 307970660 307970700 7.540000e-05 60.2
51 TraesCS5A01G043700 chr4B 75.668 374 76 13 6293 6661 402962294 402962657 9.290000e-39 172.0
52 TraesCS5A01G043700 chr2B 94.444 90 4 1 6870 6959 532469911 532469999 3.390000e-28 137.0
53 TraesCS5A01G043700 chr2B 91.667 60 2 3 6228 6284 513289396 513289337 5.790000e-11 80.5
54 TraesCS5A01G043700 chr2A 89.655 87 9 0 3483 3569 102688124 102688038 2.050000e-20 111.0
55 TraesCS5A01G043700 chr2A 91.379 58 4 1 6228 6284 552486359 552486416 2.080000e-10 78.7
56 TraesCS5A01G043700 chr7A 98.333 60 1 0 3 62 628670475 628670534 9.550000e-19 106.0
57 TraesCS5A01G043700 chr3A 86.154 65 6 2 5231 5294 117319712 117319650 4.510000e-07 67.6
58 TraesCS5A01G043700 chr4D 89.796 49 5 0 5236 5284 75264128 75264080 5.830000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G043700 chr5A 40096789 40103753 6964 False 6212.5 12068 100.000000 1 6965 2 chr5A.!!$F3 6964
1 TraesCS5A01G043700 chr5D 50776937 50783026 6089 False 3229.0 8811 95.646333 60 6293 3 chr5D.!!$F2 6233
2 TraesCS5A01G043700 chr5B 53656090 53662955 6865 False 1882.2 7055 95.435000 60 6246 5 chr5B.!!$F4 6186
3 TraesCS5A01G043700 chr5B 53667087 53667640 553 False 375.6 667 96.290500 6246 6723 2 chr5B.!!$F5 477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.043334 AGTAGATGAGGGCCAGTGGT 59.957 55.000 11.74 0.0 0.00 4.16 F
172 173 0.179000 GTAGATGAGGGCCAGTGGTG 59.821 60.000 11.74 0.0 0.00 4.17 F
543 672 0.466543 TCCCGTCCATCCGGTTAATG 59.533 55.000 0.00 0.0 46.66 1.90 F
553 682 0.530288 CCGGTTAATGGTGCCTTTGG 59.470 55.000 0.00 0.0 0.00 3.28 F
1305 1576 2.202566 GCGTATAGTGAGGAACAAGCC 58.797 52.381 0.00 0.0 0.00 4.35 F
2669 2940 3.119316 ACAGAGTTTCTAGACGGATGCAG 60.119 47.826 0.00 0.0 0.00 4.41 F
3036 3307 2.161211 GCTGATGAAGAGCAAAGGTCAC 59.839 50.000 0.00 0.0 36.40 3.67 F
4235 4508 0.514255 CAGCAACACACCAGACATCG 59.486 55.000 0.00 0.0 0.00 3.84 F
4923 5199 1.541310 CCTAGGGAACACAGCCGTGA 61.541 60.000 7.16 0.0 46.80 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1834 0.250295 CTTCAGGCGGAACCAACTCA 60.250 55.000 0.00 0.0 43.14 3.41 R
2155 2426 1.955778 CCACTGACAAAGACAATGGCA 59.044 47.619 0.00 0.0 33.92 4.92 R
2275 2546 3.490348 CCCATGTTTCCTCAAACTCTGT 58.510 45.455 0.00 0.0 42.29 3.41 R
2669 2940 4.142381 GCATTTCCTGGTATGAAGTTCCAC 60.142 45.833 13.26 0.0 0.00 4.02 R
2752 3023 5.221581 TGGTAGAGGTGTCAAGGAAAACTAC 60.222 44.000 0.00 0.0 0.00 2.73 R
4235 4508 0.253044 TGAGCAGCCTACATTGTCCC 59.747 55.000 0.00 0.0 0.00 4.46 R
4914 5190 0.391661 CCTTGTATGCTCACGGCTGT 60.392 55.000 0.00 0.0 42.39 4.40 R
5591 6557 0.107017 CCCATGGCACTTGAGTAGGG 60.107 60.000 6.09 0.0 0.00 3.53 R
6522 7575 0.035152 ATTCGCCAGAAGCATCACCA 60.035 50.000 0.00 0.0 44.04 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
24 25 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
25 26 7.483307 AGAACGTTTTTGACACTACACTAGTA 58.517 34.615 0.46 0.00 37.23 1.82
26 27 8.139989 AGAACGTTTTTGACACTACACTAGTAT 58.860 33.333 0.46 0.00 37.23 2.12
27 28 9.398170 GAACGTTTTTGACACTACACTAGTATA 57.602 33.333 0.46 0.00 37.23 1.47
28 29 8.733857 ACGTTTTTGACACTACACTAGTATAC 57.266 34.615 0.00 0.00 37.23 1.47
29 30 8.352201 ACGTTTTTGACACTACACTAGTATACA 58.648 33.333 5.50 0.00 37.23 2.29
30 31 9.184062 CGTTTTTGACACTACACTAGTATACAA 57.816 33.333 5.50 0.00 37.23 2.41
34 35 8.732413 TTGACACTACACTAGTATACAAAACG 57.268 34.615 5.50 0.00 37.23 3.60
35 36 6.803320 TGACACTACACTAGTATACAAAACGC 59.197 38.462 5.50 0.00 37.23 4.84
36 37 6.917533 ACACTACACTAGTATACAAAACGCT 58.082 36.000 5.50 0.00 37.23 5.07
37 38 7.025963 ACACTACACTAGTATACAAAACGCTC 58.974 38.462 5.50 0.00 37.23 5.03
38 39 7.094463 ACACTACACTAGTATACAAAACGCTCT 60.094 37.037 5.50 0.00 37.23 4.09
39 40 7.754027 CACTACACTAGTATACAAAACGCTCTT 59.246 37.037 5.50 0.00 37.23 2.85
40 41 8.950210 ACTACACTAGTATACAAAACGCTCTTA 58.050 33.333 5.50 0.00 37.23 2.10
41 42 9.947669 CTACACTAGTATACAAAACGCTCTTAT 57.052 33.333 5.50 0.00 0.00 1.73
49 50 9.659830 GTATACAAAACGCTCTTATATTTTGGG 57.340 33.333 11.67 0.00 43.26 4.12
50 51 6.827586 ACAAAACGCTCTTATATTTTGGGA 57.172 33.333 11.67 0.00 43.26 4.37
51 52 6.617879 ACAAAACGCTCTTATATTTTGGGAC 58.382 36.000 11.67 0.00 43.26 4.46
52 53 5.479716 AAACGCTCTTATATTTTGGGACG 57.520 39.130 0.00 0.00 0.00 4.79
53 54 3.463944 ACGCTCTTATATTTTGGGACGG 58.536 45.455 0.00 0.00 0.00 4.79
54 55 3.133362 ACGCTCTTATATTTTGGGACGGA 59.867 43.478 0.00 0.00 0.00 4.69
55 56 3.741344 CGCTCTTATATTTTGGGACGGAG 59.259 47.826 0.00 0.00 0.00 4.63
56 57 4.065789 GCTCTTATATTTTGGGACGGAGG 58.934 47.826 0.00 0.00 0.00 4.30
57 58 4.642429 CTCTTATATTTTGGGACGGAGGG 58.358 47.826 0.00 0.00 0.00 4.30
58 59 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
71 72 2.635915 ACGGAGGGAGTATGTCACAAAA 59.364 45.455 0.00 0.00 0.00 2.44
140 141 3.772025 ACCACTGGAGGAGATTCTACTTG 59.228 47.826 0.71 0.00 0.00 3.16
161 162 1.858091 ATTTGCGCGGAGTAGATGAG 58.142 50.000 8.83 0.00 0.00 2.90
162 163 0.179111 TTTGCGCGGAGTAGATGAGG 60.179 55.000 8.83 0.00 0.00 3.86
163 164 2.016393 TTGCGCGGAGTAGATGAGGG 62.016 60.000 8.83 0.00 0.00 4.30
164 165 2.336809 CGCGGAGTAGATGAGGGC 59.663 66.667 0.00 0.00 0.00 5.19
165 166 2.737830 GCGGAGTAGATGAGGGCC 59.262 66.667 0.00 0.00 0.00 5.80
166 167 2.134287 GCGGAGTAGATGAGGGCCA 61.134 63.158 6.18 0.00 0.00 5.36
167 168 2.045280 CGGAGTAGATGAGGGCCAG 58.955 63.158 6.18 0.00 0.00 4.85
168 169 0.757188 CGGAGTAGATGAGGGCCAGT 60.757 60.000 6.18 0.00 0.00 4.00
169 170 0.755686 GGAGTAGATGAGGGCCAGTG 59.244 60.000 6.18 0.00 0.00 3.66
170 171 0.755686 GAGTAGATGAGGGCCAGTGG 59.244 60.000 6.18 4.20 0.00 4.00
171 172 0.043334 AGTAGATGAGGGCCAGTGGT 59.957 55.000 11.74 0.00 0.00 4.16
172 173 0.179000 GTAGATGAGGGCCAGTGGTG 59.821 60.000 11.74 0.00 0.00 4.17
173 174 1.626356 TAGATGAGGGCCAGTGGTGC 61.626 60.000 11.74 0.00 0.00 5.01
174 175 3.259314 ATGAGGGCCAGTGGTGCA 61.259 61.111 11.74 4.52 0.00 4.57
175 176 3.278072 ATGAGGGCCAGTGGTGCAG 62.278 63.158 11.74 0.00 0.00 4.41
178 179 4.033776 GGGCCAGTGGTGCAGCTA 62.034 66.667 18.08 0.37 0.00 3.32
179 180 2.437359 GGCCAGTGGTGCAGCTAG 60.437 66.667 18.08 6.64 0.00 3.42
180 181 2.665000 GCCAGTGGTGCAGCTAGA 59.335 61.111 18.08 0.00 0.00 2.43
181 182 1.222936 GCCAGTGGTGCAGCTAGAT 59.777 57.895 18.08 0.00 0.00 1.98
182 183 0.813210 GCCAGTGGTGCAGCTAGATC 60.813 60.000 18.08 2.88 0.00 2.75
183 184 0.538584 CCAGTGGTGCAGCTAGATCA 59.461 55.000 18.08 0.00 0.00 2.92
184 185 1.472904 CCAGTGGTGCAGCTAGATCAG 60.473 57.143 18.08 0.27 0.00 2.90
185 186 0.829333 AGTGGTGCAGCTAGATCAGG 59.171 55.000 18.08 0.00 0.00 3.86
186 187 0.539051 GTGGTGCAGCTAGATCAGGT 59.461 55.000 18.08 0.00 34.51 4.00
187 188 1.065854 GTGGTGCAGCTAGATCAGGTT 60.066 52.381 18.08 0.00 30.72 3.50
188 189 1.630369 TGGTGCAGCTAGATCAGGTTT 59.370 47.619 18.08 0.00 30.72 3.27
189 190 2.012673 GGTGCAGCTAGATCAGGTTTG 58.987 52.381 9.07 0.00 30.72 2.93
190 191 2.012673 GTGCAGCTAGATCAGGTTTGG 58.987 52.381 0.00 0.00 30.72 3.28
191 192 1.630369 TGCAGCTAGATCAGGTTTGGT 59.370 47.619 0.00 0.00 30.72 3.67
192 193 2.012673 GCAGCTAGATCAGGTTTGGTG 58.987 52.381 0.00 0.00 30.72 4.17
510 639 3.372440 ACAGATCAATCCAGTTTCCCC 57.628 47.619 0.00 0.00 0.00 4.81
543 672 0.466543 TCCCGTCCATCCGGTTAATG 59.533 55.000 0.00 0.00 46.66 1.90
547 676 1.021968 GTCCATCCGGTTAATGGTGC 58.978 55.000 17.71 10.11 43.52 5.01
553 682 0.530288 CCGGTTAATGGTGCCTTTGG 59.470 55.000 0.00 0.00 0.00 3.28
617 746 3.616956 TGCACTGGAGAACCTCAATAG 57.383 47.619 0.00 0.00 37.04 1.73
631 760 4.965532 ACCTCAATAGAGTGGTTCTATGCT 59.034 41.667 0.00 0.00 46.19 3.79
798 927 6.602009 GCTTGGATAACTGTAGGTAATGGTTT 59.398 38.462 0.00 0.00 0.00 3.27
818 947 5.220662 GGTTTACTCGCACGACTGTATAGTA 60.221 44.000 0.00 0.00 37.25 1.82
1221 1492 6.586344 ACATTCTGTGAGAAGTGAAGAAGAA 58.414 36.000 0.00 0.00 37.69 2.52
1305 1576 2.202566 GCGTATAGTGAGGAACAAGCC 58.797 52.381 0.00 0.00 0.00 4.35
1563 1834 9.976776 ATTCAGATAATTCCTGAGCATAATCAT 57.023 29.630 9.51 0.00 41.16 2.45
1629 1900 4.017126 GGATCCTTTCGATTCCAAAACCT 58.983 43.478 3.84 0.00 0.00 3.50
1641 1912 4.447138 TCCAAAACCTGGTACACTGAAT 57.553 40.909 0.00 0.00 46.51 2.57
2155 2426 4.099633 TGAAGTCATTCTCCCAGAGACAT 58.900 43.478 0.00 0.00 38.51 3.06
2275 2546 4.378770 GCATGAAAGATTGCGAGTCAGAAA 60.379 41.667 0.00 0.00 0.00 2.52
2437 2708 8.970859 ATCACTGGATAGGAATTTTAGTTCAG 57.029 34.615 0.00 0.00 30.03 3.02
2669 2940 3.119316 ACAGAGTTTCTAGACGGATGCAG 60.119 47.826 0.00 0.00 0.00 4.41
3036 3307 2.161211 GCTGATGAAGAGCAAAGGTCAC 59.839 50.000 0.00 0.00 36.40 3.67
3265 3536 8.534954 TTAGTCCTTAGTAGCATGTGTCTAAT 57.465 34.615 0.00 0.00 0.00 1.73
3269 3540 9.765795 GTCCTTAGTAGCATGTGTCTAATAAAT 57.234 33.333 0.00 0.00 29.73 1.40
3358 3630 6.409704 TGTTGACCAACCAAATCAAAATCAA 58.590 32.000 10.04 0.00 40.46 2.57
3873 4145 4.532834 AGTTCAGGCAAAGTCCTAAAACA 58.467 39.130 0.00 0.00 35.32 2.83
3937 4210 6.653526 TGTTCAATCATGTCCAAAATCAGT 57.346 33.333 0.00 0.00 0.00 3.41
3992 4265 2.355010 AATGCTGCCTTGGTATCTCC 57.645 50.000 0.00 0.00 0.00 3.71
4208 4481 4.256920 GTCTGTAGGATTGAAGTGCATGT 58.743 43.478 0.00 0.00 0.00 3.21
4229 4502 3.297620 GGGGCAGCAACACACCAG 61.298 66.667 0.00 0.00 0.00 4.00
4235 4508 0.514255 CAGCAACACACCAGACATCG 59.486 55.000 0.00 0.00 0.00 3.84
4260 4533 3.276857 CAATGTAGGCTGCTCATTGTCT 58.723 45.455 23.22 7.30 41.63 3.41
4283 4556 2.493675 TCTGGAAATCTCACTCAGTCCG 59.506 50.000 0.00 0.00 0.00 4.79
4286 4559 3.254892 GGAAATCTCACTCAGTCCGTTC 58.745 50.000 0.00 0.00 0.00 3.95
4322 4595 2.863137 CTGATGCTCGTTTCTAGGCTTC 59.137 50.000 0.00 0.00 0.00 3.86
4324 4597 2.831685 TGCTCGTTTCTAGGCTTCAA 57.168 45.000 0.00 0.00 0.00 2.69
4341 4614 4.938226 GCTTCAATAGGTCAAGTAAGCAGT 59.062 41.667 0.00 0.00 38.15 4.40
4407 4683 2.828520 GCTAGATAGCTGGTAGATGCCA 59.171 50.000 4.58 0.00 45.62 4.92
4675 4951 5.806818 TGTCAAAATATCGGAACAAGGGTA 58.193 37.500 0.00 0.00 0.00 3.69
4923 5199 1.541310 CCTAGGGAACACAGCCGTGA 61.541 60.000 7.16 0.00 46.80 4.35
4939 5215 2.205074 CGTGAGCATACAAGGGTCATC 58.795 52.381 0.00 0.00 43.70 2.92
4948 5224 5.661458 CATACAAGGGTCATCGGGATATAC 58.339 45.833 0.00 0.00 0.00 1.47
4955 5248 6.689561 AGGGTCATCGGGATATACCATTATA 58.310 40.000 4.43 0.00 41.20 0.98
5028 5977 1.897802 AGATCCTTGCCTTTGCCAAAG 59.102 47.619 10.28 10.28 38.24 2.77
5068 6019 3.582647 TCACAGCTAATTGGAGGACTGAA 59.417 43.478 0.00 0.00 0.00 3.02
5116 6068 8.046708 TGTAGCTTGTCCTAACAATAACATCAT 58.953 33.333 0.00 0.00 44.18 2.45
5240 6192 8.310122 ACCACCTCCGTAACTAAATATAAGAA 57.690 34.615 0.00 0.00 0.00 2.52
5241 6193 8.419442 ACCACCTCCGTAACTAAATATAAGAAG 58.581 37.037 0.00 0.00 0.00 2.85
5389 6354 3.533606 ATCACACGGATGAAGAGAAGG 57.466 47.619 0.00 0.00 34.06 3.46
5398 6363 4.512484 GGATGAAGAGAAGGAAGTTGGAG 58.488 47.826 0.00 0.00 0.00 3.86
5442 6407 7.039270 GGAGACACACAAAAGTAAAATTTGGT 58.961 34.615 0.00 0.00 41.08 3.67
5539 6505 5.898174 TCTTTCTAATGCCATGCTGAATTG 58.102 37.500 0.00 0.00 0.00 2.32
5542 6508 5.001237 TCTAATGCCATGCTGAATTGTTG 57.999 39.130 0.00 0.00 0.00 3.33
5549 6515 4.619863 GCCATGCTGAATTGTTGAAGTCAT 60.620 41.667 0.00 0.00 35.71 3.06
5550 6516 5.100259 CCATGCTGAATTGTTGAAGTCATC 58.900 41.667 0.00 0.00 35.71 2.92
5552 6518 5.366829 TGCTGAATTGTTGAAGTCATCTG 57.633 39.130 0.00 0.00 35.71 2.90
5554 6520 5.997129 TGCTGAATTGTTGAAGTCATCTGTA 59.003 36.000 0.00 0.00 35.71 2.74
5555 6521 6.148315 TGCTGAATTGTTGAAGTCATCTGTAG 59.852 38.462 0.00 0.00 35.71 2.74
5556 6522 6.486253 TGAATTGTTGAAGTCATCTGTAGC 57.514 37.500 0.00 0.00 31.36 3.58
5557 6523 6.233434 TGAATTGTTGAAGTCATCTGTAGCT 58.767 36.000 0.00 0.00 31.36 3.32
5558 6524 7.386059 TGAATTGTTGAAGTCATCTGTAGCTA 58.614 34.615 0.00 0.00 31.36 3.32
5559 6525 8.043113 TGAATTGTTGAAGTCATCTGTAGCTAT 58.957 33.333 0.00 0.00 31.36 2.97
5560 6526 8.798859 AATTGTTGAAGTCATCTGTAGCTATT 57.201 30.769 0.00 0.00 0.00 1.73
5561 6527 7.601073 TTGTTGAAGTCATCTGTAGCTATTG 57.399 36.000 0.00 0.00 0.00 1.90
5562 6528 6.701340 TGTTGAAGTCATCTGTAGCTATTGT 58.299 36.000 0.00 0.00 0.00 2.71
5563 6529 7.836842 TGTTGAAGTCATCTGTAGCTATTGTA 58.163 34.615 0.00 0.00 0.00 2.41
5564 6530 8.478066 TGTTGAAGTCATCTGTAGCTATTGTAT 58.522 33.333 0.00 0.00 0.00 2.29
5565 6531 9.319143 GTTGAAGTCATCTGTAGCTATTGTATT 57.681 33.333 0.00 0.00 0.00 1.89
5566 6532 9.890629 TTGAAGTCATCTGTAGCTATTGTATTT 57.109 29.630 0.00 0.00 0.00 1.40
5567 6533 9.534565 TGAAGTCATCTGTAGCTATTGTATTTC 57.465 33.333 0.00 0.00 0.00 2.17
5568 6534 9.757227 GAAGTCATCTGTAGCTATTGTATTTCT 57.243 33.333 0.00 0.00 0.00 2.52
5591 6557 9.677567 TTCTTATGTTGTTAGCAATTTCTTGTC 57.322 29.630 0.00 0.00 36.92 3.18
5592 6558 8.296713 TCTTATGTTGTTAGCAATTTCTTGTCC 58.703 33.333 0.00 0.00 36.92 4.02
5593 6559 5.195001 TGTTGTTAGCAATTTCTTGTCCC 57.805 39.130 0.00 0.00 36.92 4.46
5594 6560 4.892934 TGTTGTTAGCAATTTCTTGTCCCT 59.107 37.500 0.00 0.00 36.92 4.20
5595 6561 6.065374 TGTTGTTAGCAATTTCTTGTCCCTA 58.935 36.000 0.00 0.00 36.92 3.53
5596 6562 6.016610 TGTTGTTAGCAATTTCTTGTCCCTAC 60.017 38.462 0.00 0.00 36.92 3.18
5597 6563 5.876357 TGTTAGCAATTTCTTGTCCCTACT 58.124 37.500 0.00 0.00 34.69 2.57
5598 6564 5.938125 TGTTAGCAATTTCTTGTCCCTACTC 59.062 40.000 0.00 0.00 34.69 2.59
5599 6565 4.640771 AGCAATTTCTTGTCCCTACTCA 57.359 40.909 0.00 0.00 34.69 3.41
5600 6566 4.985538 AGCAATTTCTTGTCCCTACTCAA 58.014 39.130 0.00 0.00 34.69 3.02
5601 6567 5.006386 AGCAATTTCTTGTCCCTACTCAAG 58.994 41.667 0.00 0.00 41.36 3.02
5602 6568 4.762251 GCAATTTCTTGTCCCTACTCAAGT 59.238 41.667 0.00 0.00 40.97 3.16
5603 6569 5.335191 GCAATTTCTTGTCCCTACTCAAGTG 60.335 44.000 0.00 0.00 40.97 3.16
5604 6570 3.402628 TTCTTGTCCCTACTCAAGTGC 57.597 47.619 0.00 0.00 40.97 4.40
5605 6571 1.623811 TCTTGTCCCTACTCAAGTGCC 59.376 52.381 0.00 0.00 40.97 5.01
5606 6572 1.347707 CTTGTCCCTACTCAAGTGCCA 59.652 52.381 0.00 0.00 37.04 4.92
5607 6573 1.656587 TGTCCCTACTCAAGTGCCAT 58.343 50.000 0.00 0.00 0.00 4.40
5608 6574 1.278985 TGTCCCTACTCAAGTGCCATG 59.721 52.381 0.00 0.00 0.00 3.66
5609 6575 0.911769 TCCCTACTCAAGTGCCATGG 59.088 55.000 7.63 7.63 0.00 3.66
5610 6576 0.107017 CCCTACTCAAGTGCCATGGG 60.107 60.000 15.13 0.00 0.00 4.00
5611 6577 0.620556 CCTACTCAAGTGCCATGGGT 59.379 55.000 15.13 3.17 35.24 4.51
5612 6578 1.837439 CCTACTCAAGTGCCATGGGTA 59.163 52.381 15.13 4.27 32.65 3.69
5613 6579 2.439507 CCTACTCAAGTGCCATGGGTAT 59.560 50.000 15.13 0.00 33.48 2.73
5614 6580 3.117888 CCTACTCAAGTGCCATGGGTATT 60.118 47.826 15.13 0.00 33.48 1.89
5615 6581 4.102524 CCTACTCAAGTGCCATGGGTATTA 59.897 45.833 15.13 0.00 33.48 0.98
5616 6582 4.584638 ACTCAAGTGCCATGGGTATTAA 57.415 40.909 15.13 0.00 27.17 1.40
5617 6583 4.526970 ACTCAAGTGCCATGGGTATTAAG 58.473 43.478 15.13 0.00 27.17 1.85
5618 6584 3.885297 CTCAAGTGCCATGGGTATTAAGG 59.115 47.826 15.13 0.00 0.00 2.69
5619 6585 2.958355 CAAGTGCCATGGGTATTAAGGG 59.042 50.000 15.13 0.00 0.00 3.95
5620 6586 1.499007 AGTGCCATGGGTATTAAGGGG 59.501 52.381 15.13 0.00 0.00 4.79
5621 6587 0.856982 TGCCATGGGTATTAAGGGGG 59.143 55.000 15.13 0.00 0.00 5.40
5622 6588 0.857675 GCCATGGGTATTAAGGGGGT 59.142 55.000 15.13 0.00 0.00 4.95
5623 6589 1.480498 GCCATGGGTATTAAGGGGGTG 60.480 57.143 15.13 0.00 0.00 4.61
5624 6590 1.856920 CCATGGGTATTAAGGGGGTGT 59.143 52.381 2.85 0.00 0.00 4.16
5625 6591 2.246327 CCATGGGTATTAAGGGGGTGTT 59.754 50.000 2.85 0.00 0.00 3.32
5626 6592 3.310288 CCATGGGTATTAAGGGGGTGTTT 60.310 47.826 2.85 0.00 0.00 2.83
5627 6593 3.459710 TGGGTATTAAGGGGGTGTTTG 57.540 47.619 0.00 0.00 0.00 2.93
5628 6594 2.043252 TGGGTATTAAGGGGGTGTTTGG 59.957 50.000 0.00 0.00 0.00 3.28
5629 6595 2.043389 GGGTATTAAGGGGGTGTTTGGT 59.957 50.000 0.00 0.00 0.00 3.67
5630 6596 3.502672 GGGTATTAAGGGGGTGTTTGGTT 60.503 47.826 0.00 0.00 0.00 3.67
5631 6597 3.765511 GGTATTAAGGGGGTGTTTGGTTC 59.234 47.826 0.00 0.00 0.00 3.62
5632 6598 2.385135 TTAAGGGGGTGTTTGGTTCC 57.615 50.000 0.00 0.00 0.00 3.62
5633 6599 1.232909 TAAGGGGGTGTTTGGTTCCA 58.767 50.000 0.00 0.00 0.00 3.53
5634 6600 0.340208 AAGGGGGTGTTTGGTTCCAA 59.660 50.000 0.00 0.00 0.00 3.53
5635 6601 0.397957 AGGGGGTGTTTGGTTCCAAC 60.398 55.000 3.56 1.35 0.00 3.77
5636 6602 0.688087 GGGGGTGTTTGGTTCCAACA 60.688 55.000 3.56 3.76 0.00 3.33
5637 6603 0.462375 GGGGTGTTTGGTTCCAACAC 59.538 55.000 19.15 19.15 32.58 3.32
5638 6604 1.187087 GGGTGTTTGGTTCCAACACA 58.813 50.000 23.94 18.52 33.73 3.72
5639 6605 1.550976 GGGTGTTTGGTTCCAACACAA 59.449 47.619 23.94 7.00 33.73 3.33
5640 6606 2.028020 GGGTGTTTGGTTCCAACACAAA 60.028 45.455 23.94 11.11 33.73 2.83
5641 6607 3.557264 GGGTGTTTGGTTCCAACACAAAA 60.557 43.478 23.94 4.36 33.82 2.44
5642 6608 4.065789 GGTGTTTGGTTCCAACACAAAAA 58.934 39.130 23.94 7.94 33.82 1.94
5661 6627 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
5662 6628 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
5663 6629 2.863809 AGTCCCTAGCAAACCAAACAG 58.136 47.619 0.00 0.00 0.00 3.16
5664 6630 1.886542 GTCCCTAGCAAACCAAACAGG 59.113 52.381 0.00 0.00 45.67 4.00
5665 6631 1.203001 TCCCTAGCAAACCAAACAGGG 60.203 52.381 0.00 0.00 43.52 4.45
5666 6632 1.480498 CCCTAGCAAACCAAACAGGGT 60.480 52.381 0.00 0.00 45.04 4.34
5667 6633 1.613437 CCTAGCAAACCAAACAGGGTG 59.387 52.381 0.00 0.00 41.32 4.61
5668 6634 1.613437 CTAGCAAACCAAACAGGGTGG 59.387 52.381 0.00 0.00 41.32 4.61
5669 6635 1.048160 AGCAAACCAAACAGGGTGGG 61.048 55.000 0.00 0.00 41.32 4.61
5670 6636 1.045911 GCAAACCAAACAGGGTGGGA 61.046 55.000 0.00 0.00 41.32 4.37
5671 6637 0.750249 CAAACCAAACAGGGTGGGAC 59.250 55.000 0.00 0.00 41.32 4.46
5672 6638 0.634465 AAACCAAACAGGGTGGGACT 59.366 50.000 0.00 0.00 41.32 3.85
5673 6639 0.634465 AACCAAACAGGGTGGGACTT 59.366 50.000 0.00 0.00 41.32 3.01
5674 6640 0.634465 ACCAAACAGGGTGGGACTTT 59.366 50.000 0.00 0.00 43.89 2.66
5675 6641 1.007842 ACCAAACAGGGTGGGACTTTT 59.992 47.619 0.00 0.00 43.89 2.27
5676 6642 2.115427 CCAAACAGGGTGGGACTTTTT 58.885 47.619 0.00 0.00 32.03 1.94
5706 6672 7.859613 CTTTTTGCTAAAAGTCCTTAGAAGC 57.140 36.000 20.79 0.00 43.34 3.86
5707 6673 6.952773 TTTTGCTAAAAGTCCTTAGAAGCA 57.047 33.333 6.73 6.73 31.59 3.91
5708 6674 5.941948 TTGCTAAAAGTCCTTAGAAGCAC 57.058 39.130 9.21 0.00 31.59 4.40
5709 6675 4.324267 TGCTAAAAGTCCTTAGAAGCACC 58.676 43.478 6.73 0.00 31.59 5.01
5710 6676 4.041691 TGCTAAAAGTCCTTAGAAGCACCT 59.958 41.667 6.73 0.00 31.59 4.00
5711 6677 4.632251 GCTAAAAGTCCTTAGAAGCACCTC 59.368 45.833 0.00 0.00 31.59 3.85
5712 6678 3.704800 AAAGTCCTTAGAAGCACCTCC 57.295 47.619 0.00 0.00 0.00 4.30
5713 6679 2.632763 AGTCCTTAGAAGCACCTCCT 57.367 50.000 0.00 0.00 0.00 3.69
5714 6680 2.909217 AGTCCTTAGAAGCACCTCCTT 58.091 47.619 0.00 0.00 0.00 3.36
5715 6681 2.569404 AGTCCTTAGAAGCACCTCCTTG 59.431 50.000 0.00 0.00 0.00 3.61
5716 6682 2.567615 GTCCTTAGAAGCACCTCCTTGA 59.432 50.000 0.00 0.00 0.00 3.02
5717 6683 2.834549 TCCTTAGAAGCACCTCCTTGAG 59.165 50.000 0.00 0.00 0.00 3.02
5718 6684 2.834549 CCTTAGAAGCACCTCCTTGAGA 59.165 50.000 0.00 0.00 0.00 3.27
5719 6685 3.118811 CCTTAGAAGCACCTCCTTGAGAG 60.119 52.174 0.00 0.00 42.83 3.20
5720 6686 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
5721 6687 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
5722 6688 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
5723 6689 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
5724 6690 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
5725 6691 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
5726 6692 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
5727 6693 3.500299 GCACCTCCTTGAGAGTCTTTTTC 59.500 47.826 0.00 0.00 41.47 2.29
5728 6694 4.708177 CACCTCCTTGAGAGTCTTTTTCA 58.292 43.478 0.00 0.00 41.47 2.69
5729 6695 5.126067 CACCTCCTTGAGAGTCTTTTTCAA 58.874 41.667 0.00 0.00 41.47 2.69
5730 6696 5.590259 CACCTCCTTGAGAGTCTTTTTCAAA 59.410 40.000 0.00 0.00 41.47 2.69
5731 6697 6.095440 CACCTCCTTGAGAGTCTTTTTCAAAA 59.905 38.462 0.00 0.00 41.47 2.44
5732 6698 6.663523 ACCTCCTTGAGAGTCTTTTTCAAAAA 59.336 34.615 0.00 0.00 41.47 1.94
5733 6699 7.148000 ACCTCCTTGAGAGTCTTTTTCAAAAAG 60.148 37.037 15.46 15.46 41.47 2.27
5734 6700 7.148000 CCTCCTTGAGAGTCTTTTTCAAAAAGT 60.148 37.037 19.82 4.20 41.47 2.66
5735 6701 7.762382 TCCTTGAGAGTCTTTTTCAAAAAGTC 58.238 34.615 19.82 15.25 31.11 3.01
5736 6702 6.975197 CCTTGAGAGTCTTTTTCAAAAAGTCC 59.025 38.462 19.82 12.77 31.11 3.85
5737 6703 6.451064 TGAGAGTCTTTTTCAAAAAGTCCC 57.549 37.500 19.82 7.71 0.00 4.46
5738 6704 5.949354 TGAGAGTCTTTTTCAAAAAGTCCCA 59.051 36.000 19.82 7.68 0.00 4.37
5739 6705 6.095440 TGAGAGTCTTTTTCAAAAAGTCCCAG 59.905 38.462 19.82 0.00 0.00 4.45
5740 6706 5.360999 AGAGTCTTTTTCAAAAAGTCCCAGG 59.639 40.000 19.82 0.00 0.00 4.45
5741 6707 4.405680 AGTCTTTTTCAAAAAGTCCCAGGG 59.594 41.667 19.82 0.00 0.00 4.45
5742 6708 4.404394 GTCTTTTTCAAAAAGTCCCAGGGA 59.596 41.667 19.82 3.01 0.00 4.20
5774 6740 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
5775 6741 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
5776 6742 4.771054 TCCTAGGACTAGAGAACCAAACAC 59.229 45.833 7.62 0.00 35.21 3.32
5777 6743 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
5778 6744 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
5779 6745 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
5780 6746 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
5781 6747 3.046374 ACTAGAGAACCAAACACCACCT 58.954 45.455 0.00 0.00 0.00 4.00
5782 6748 4.228824 ACTAGAGAACCAAACACCACCTA 58.771 43.478 0.00 0.00 0.00 3.08
5783 6749 4.657039 ACTAGAGAACCAAACACCACCTAA 59.343 41.667 0.00 0.00 0.00 2.69
5784 6750 4.513406 AGAGAACCAAACACCACCTAAA 57.487 40.909 0.00 0.00 0.00 1.85
5785 6751 5.061721 AGAGAACCAAACACCACCTAAAT 57.938 39.130 0.00 0.00 0.00 1.40
5786 6752 5.070685 AGAGAACCAAACACCACCTAAATC 58.929 41.667 0.00 0.00 0.00 2.17
5787 6753 5.061721 AGAACCAAACACCACCTAAATCT 57.938 39.130 0.00 0.00 0.00 2.40
5788 6754 5.070685 AGAACCAAACACCACCTAAATCTC 58.929 41.667 0.00 0.00 0.00 2.75
5789 6755 3.763057 ACCAAACACCACCTAAATCTCC 58.237 45.455 0.00 0.00 0.00 3.71
5790 6756 3.139397 ACCAAACACCACCTAAATCTCCA 59.861 43.478 0.00 0.00 0.00 3.86
5791 6757 3.758554 CCAAACACCACCTAAATCTCCAG 59.241 47.826 0.00 0.00 0.00 3.86
5792 6758 4.506625 CCAAACACCACCTAAATCTCCAGA 60.507 45.833 0.00 0.00 0.00 3.86
5793 6759 5.256474 CAAACACCACCTAAATCTCCAGAT 58.744 41.667 0.00 0.00 36.07 2.90
5794 6760 6.414732 CAAACACCACCTAAATCTCCAGATA 58.585 40.000 0.00 0.00 33.73 1.98
5795 6761 5.878406 ACACCACCTAAATCTCCAGATAG 57.122 43.478 0.00 0.00 33.73 2.08
5848 6814 9.528018 CCATGTTTTCTTTGTATGTTGTTAAGT 57.472 29.630 0.00 0.00 0.00 2.24
5882 6848 2.445145 TGAACCCTGACAGGAATTTCCA 59.555 45.455 23.77 8.95 39.61 3.53
5971 6943 9.494271 GTAGTACCATTGATGTGTGAATATCAT 57.506 33.333 0.00 0.00 33.68 2.45
5976 6948 9.412460 ACCATTGATGTGTGAATATCATAAGTT 57.588 29.630 0.00 0.00 33.68 2.66
6006 6978 8.415950 TTTCATTAACTGATTGTTGTATGGGT 57.584 30.769 0.00 0.00 39.55 4.51
6007 6979 8.415950 TTCATTAACTGATTGTTGTATGGGTT 57.584 30.769 0.00 0.00 39.55 4.11
6008 6980 9.521841 TTCATTAACTGATTGTTGTATGGGTTA 57.478 29.630 0.00 0.00 39.55 2.85
6009 6981 8.952278 TCATTAACTGATTGTTGTATGGGTTAC 58.048 33.333 0.00 0.00 39.55 2.50
6011 6983 4.258543 ACTGATTGTTGTATGGGTTACGG 58.741 43.478 0.00 0.00 33.15 4.02
6012 6984 4.258543 CTGATTGTTGTATGGGTTACGGT 58.741 43.478 0.00 0.00 33.15 4.83
6013 6985 4.004314 TGATTGTTGTATGGGTTACGGTG 58.996 43.478 0.00 0.00 33.15 4.94
6014 6986 3.488778 TTGTTGTATGGGTTACGGTGT 57.511 42.857 0.00 0.00 33.15 4.16
6015 6987 2.768698 TGTTGTATGGGTTACGGTGTG 58.231 47.619 0.00 0.00 33.15 3.82
6017 6989 3.140623 GTTGTATGGGTTACGGTGTGTT 58.859 45.455 0.00 0.00 33.15 3.32
6022 6996 3.766068 TGGGTTACGGTGTGTTGAATA 57.234 42.857 0.00 0.00 0.00 1.75
6052 7026 6.049955 TGTATGTAGGTCTCCTTTCTTTGG 57.950 41.667 0.00 0.00 34.61 3.28
6056 7030 3.602205 AGGTCTCCTTTCTTTGGCTTT 57.398 42.857 0.00 0.00 0.00 3.51
6100 7074 9.840427 ATGTAATTTGTTTACTCAACTGTATGC 57.160 29.630 0.00 0.00 40.77 3.14
6120 7094 3.244387 TGCAGTGGAAGTATTGTGCAGTA 60.244 43.478 0.00 0.00 36.05 2.74
6249 7224 2.909504 TGGGCAGCCCTAAAATACAA 57.090 45.000 31.51 4.42 45.70 2.41
6330 7383 6.003326 TGGTGTTCATTTCATTAGCAGAGAA 58.997 36.000 0.00 0.00 0.00 2.87
6335 7388 7.663081 TGTTCATTTCATTAGCAGAGAAAGAGT 59.337 33.333 0.00 0.00 35.05 3.24
6359 7412 5.417266 TGGAAAACAAGTGTTGATCAAGTGA 59.583 36.000 8.80 0.00 38.44 3.41
6369 7422 1.009829 GATCAAGTGATCGGTGGTGC 58.990 55.000 5.57 0.00 41.15 5.01
6370 7423 0.740868 ATCAAGTGATCGGTGGTGCG 60.741 55.000 0.00 0.00 0.00 5.34
6444 7497 3.725010 GCAAAACGGCAAGAGATTACTCG 60.725 47.826 0.00 0.00 46.64 4.18
6451 7504 1.207089 CAAGAGATTACTCGGGGCACA 59.793 52.381 0.00 0.00 46.64 4.57
6508 7561 0.252421 TCCTCCACTGCTCCATGTCT 60.252 55.000 0.00 0.00 0.00 3.41
6510 7563 0.900421 CTCCACTGCTCCATGTCTCA 59.100 55.000 0.00 0.00 0.00 3.27
6512 7565 0.612229 CCACTGCTCCATGTCTCAGT 59.388 55.000 5.48 5.48 40.08 3.41
6554 7607 0.248621 GGCGAATGGCAATTTCCTCG 60.249 55.000 0.00 2.14 46.16 4.63
6626 7679 1.744114 GCTTCGATCTGGTTCCCTTCC 60.744 57.143 0.00 0.00 0.00 3.46
6635 7688 0.895559 GGTTCCCTTCCTGGTGCTTG 60.896 60.000 0.00 0.00 0.00 4.01
6661 7714 0.234106 CCGCGTTGATGATCATCTGC 59.766 55.000 30.65 27.61 38.60 4.26
6665 7718 2.195922 CGTTGATGATCATCTGCGTGA 58.804 47.619 30.65 11.46 38.60 4.35
6700 7753 3.215568 CCTGTGCACCAAACCGCA 61.216 61.111 15.69 0.00 35.30 5.69
6735 7788 4.803426 GCCGCACCGTCTCTGGAG 62.803 72.222 0.00 0.00 0.00 3.86
6736 7789 4.135153 CCGCACCGTCTCTGGAGG 62.135 72.222 0.00 0.00 0.00 4.30
6737 7790 3.062466 CGCACCGTCTCTGGAGGA 61.062 66.667 0.00 0.00 0.00 3.71
6738 7791 2.888863 GCACCGTCTCTGGAGGAG 59.111 66.667 0.00 0.00 43.12 3.69
6745 7798 2.837291 CTCTGGAGGAGAGGCGGG 60.837 72.222 0.00 0.00 44.25 6.13
6746 7799 4.465446 TCTGGAGGAGAGGCGGGG 62.465 72.222 0.00 0.00 0.00 5.73
6774 7827 2.197324 CGGAGGAGAGGAGGAGGG 59.803 72.222 0.00 0.00 0.00 4.30
6775 7828 2.695970 CGGAGGAGAGGAGGAGGGT 61.696 68.421 0.00 0.00 0.00 4.34
6776 7829 1.231928 GGAGGAGAGGAGGAGGGTC 59.768 68.421 0.00 0.00 0.00 4.46
6777 7830 1.585651 GGAGGAGAGGAGGAGGGTCA 61.586 65.000 0.00 0.00 0.00 4.02
6778 7831 0.106217 GAGGAGAGGAGGAGGGTCAG 60.106 65.000 0.00 0.00 0.00 3.51
6779 7832 1.075600 GGAGAGGAGGAGGGTCAGG 60.076 68.421 0.00 0.00 0.00 3.86
6780 7833 1.700985 GAGAGGAGGAGGGTCAGGT 59.299 63.158 0.00 0.00 0.00 4.00
6781 7834 0.396556 GAGAGGAGGAGGGTCAGGTC 60.397 65.000 0.00 0.00 0.00 3.85
6782 7835 1.755008 GAGGAGGAGGGTCAGGTCG 60.755 68.421 0.00 0.00 0.00 4.79
6783 7836 3.462678 GGAGGAGGGTCAGGTCGC 61.463 72.222 0.00 0.00 0.00 5.19
6784 7837 3.827898 GAGGAGGGTCAGGTCGCG 61.828 72.222 0.00 0.00 0.00 5.87
6804 7857 3.151022 GTCGCTGGAGGGGAGGAG 61.151 72.222 0.00 0.00 37.57 3.69
6805 7858 4.465446 TCGCTGGAGGGGAGGAGG 62.465 72.222 0.00 0.00 32.93 4.30
6835 7888 2.197324 CGGAGGAGAGGAGGAGGG 59.803 72.222 0.00 0.00 0.00 4.30
6836 7889 2.387772 CGGAGGAGAGGAGGAGGGA 61.388 68.421 0.00 0.00 0.00 4.20
6837 7890 1.231928 GGAGGAGAGGAGGAGGGAC 59.768 68.421 0.00 0.00 0.00 4.46
6838 7891 1.585651 GGAGGAGAGGAGGAGGGACA 61.586 65.000 0.00 0.00 0.00 4.02
6839 7892 0.396556 GAGGAGAGGAGGAGGGACAC 60.397 65.000 0.00 0.00 0.00 3.67
6840 7893 1.149782 AGGAGAGGAGGAGGGACACA 61.150 60.000 0.00 0.00 0.00 3.72
6841 7894 0.973496 GGAGAGGAGGAGGGACACAC 60.973 65.000 0.00 0.00 0.00 3.82
6842 7895 0.973496 GAGAGGAGGAGGGACACACC 60.973 65.000 0.00 0.00 38.08 4.16
6843 7896 2.283966 AGGAGGAGGGACACACCG 60.284 66.667 0.00 0.00 40.11 4.94
6844 7897 4.083862 GGAGGAGGGACACACCGC 62.084 72.222 0.00 0.00 40.11 5.68
6848 7901 3.626924 GAGGGACACACCGCCACT 61.627 66.667 0.00 0.00 40.11 4.00
6849 7902 3.883744 GAGGGACACACCGCCACTG 62.884 68.421 0.00 0.00 40.11 3.66
6860 7913 3.482783 GCCACTGCGAGCTCGTTC 61.483 66.667 34.46 20.79 42.22 3.95
6861 7914 2.811317 CCACTGCGAGCTCGTTCC 60.811 66.667 34.46 20.08 42.22 3.62
6862 7915 3.175240 CACTGCGAGCTCGTTCCG 61.175 66.667 34.46 22.11 42.22 4.30
6876 7929 2.754658 TCCGCCGAGGAGAAGTCC 60.755 66.667 0.00 0.00 45.98 3.85
6877 7930 3.068691 CCGCCGAGGAGAAGTCCA 61.069 66.667 0.00 0.00 46.80 4.02
6878 7931 2.427245 CCGCCGAGGAGAAGTCCAT 61.427 63.158 0.00 0.00 46.80 3.41
6879 7932 1.066587 CGCCGAGGAGAAGTCCATC 59.933 63.158 0.00 0.00 46.80 3.51
6880 7933 1.066587 GCCGAGGAGAAGTCCATCG 59.933 63.158 0.00 0.00 46.80 3.84
6881 7934 1.668101 GCCGAGGAGAAGTCCATCGT 61.668 60.000 0.00 0.00 46.80 3.73
6882 7935 0.818296 CCGAGGAGAAGTCCATCGTT 59.182 55.000 0.00 0.00 46.80 3.85
6883 7936 1.469940 CCGAGGAGAAGTCCATCGTTG 60.470 57.143 0.00 0.00 46.80 4.10
6884 7937 1.646189 GAGGAGAAGTCCATCGTTGC 58.354 55.000 0.00 0.00 46.80 4.17
6885 7938 0.250513 AGGAGAAGTCCATCGTTGCC 59.749 55.000 0.00 0.00 46.80 4.52
6886 7939 1.084370 GGAGAAGTCCATCGTTGCCG 61.084 60.000 0.00 0.00 43.31 5.69
6887 7940 1.696832 GAGAAGTCCATCGTTGCCGC 61.697 60.000 0.00 0.00 0.00 6.53
6888 7941 2.746277 AAGTCCATCGTTGCCGCC 60.746 61.111 0.00 0.00 0.00 6.13
6889 7942 3.545124 AAGTCCATCGTTGCCGCCA 62.545 57.895 0.00 0.00 0.00 5.69
6890 7943 2.819984 AAGTCCATCGTTGCCGCCAT 62.820 55.000 0.00 0.00 0.00 4.40
6891 7944 2.045438 TCCATCGTTGCCGCCATT 60.045 55.556 0.00 0.00 0.00 3.16
6892 7945 2.102749 CCATCGTTGCCGCCATTG 59.897 61.111 0.00 0.00 0.00 2.82
6893 7946 2.405805 CCATCGTTGCCGCCATTGA 61.406 57.895 0.00 0.00 0.00 2.57
6894 7947 1.505807 CATCGTTGCCGCCATTGAA 59.494 52.632 0.00 0.00 0.00 2.69
6895 7948 0.523968 CATCGTTGCCGCCATTGAAG 60.524 55.000 0.00 0.00 0.00 3.02
6896 7949 1.656818 ATCGTTGCCGCCATTGAAGG 61.657 55.000 0.00 0.00 0.00 3.46
6897 7950 2.331893 CGTTGCCGCCATTGAAGGA 61.332 57.895 2.21 0.00 0.00 3.36
6898 7951 1.508088 GTTGCCGCCATTGAAGGAG 59.492 57.895 2.21 0.00 0.00 3.69
6899 7952 0.960364 GTTGCCGCCATTGAAGGAGA 60.960 55.000 2.21 0.00 0.00 3.71
6900 7953 0.677731 TTGCCGCCATTGAAGGAGAG 60.678 55.000 2.21 0.00 0.00 3.20
6901 7954 1.221840 GCCGCCATTGAAGGAGAGA 59.778 57.895 2.21 0.00 0.00 3.10
6902 7955 0.392998 GCCGCCATTGAAGGAGAGAA 60.393 55.000 2.21 0.00 0.00 2.87
6903 7956 1.950484 GCCGCCATTGAAGGAGAGAAA 60.950 52.381 2.21 0.00 0.00 2.52
6904 7957 2.648059 CCGCCATTGAAGGAGAGAAAT 58.352 47.619 0.00 0.00 0.00 2.17
6905 7958 2.615912 CCGCCATTGAAGGAGAGAAATC 59.384 50.000 0.00 0.00 0.00 2.17
6906 7959 2.286294 CGCCATTGAAGGAGAGAAATCG 59.714 50.000 0.00 0.00 0.00 3.34
6907 7960 2.032675 GCCATTGAAGGAGAGAAATCGC 59.967 50.000 0.00 0.00 0.00 4.58
6908 7961 2.615912 CCATTGAAGGAGAGAAATCGCC 59.384 50.000 0.00 0.00 0.00 5.54
6909 7962 3.539604 CATTGAAGGAGAGAAATCGCCT 58.460 45.455 0.00 0.00 41.72 5.52
6910 7963 2.969628 TGAAGGAGAGAAATCGCCTC 57.030 50.000 0.85 0.00 39.00 4.70
6911 7964 2.179427 TGAAGGAGAGAAATCGCCTCA 58.821 47.619 0.85 0.00 39.00 3.86
6912 7965 2.167281 TGAAGGAGAGAAATCGCCTCAG 59.833 50.000 0.85 0.00 39.00 3.35
6913 7966 0.463620 AGGAGAGAAATCGCCTCAGC 59.536 55.000 0.00 0.00 34.84 4.26
6930 7983 4.457496 CGTCATGCCCGCAGAGGT 62.457 66.667 0.00 0.00 38.74 3.85
6931 7984 2.900273 GTCATGCCCGCAGAGGTA 59.100 61.111 0.00 0.00 38.74 3.08
6932 7985 1.220749 GTCATGCCCGCAGAGGTAA 59.779 57.895 0.00 0.00 38.74 2.85
6933 7986 0.179045 GTCATGCCCGCAGAGGTAAT 60.179 55.000 0.00 0.00 38.74 1.89
6934 7987 0.546122 TCATGCCCGCAGAGGTAATT 59.454 50.000 0.00 0.00 38.74 1.40
6935 7988 1.064758 TCATGCCCGCAGAGGTAATTT 60.065 47.619 0.00 0.00 38.74 1.82
6936 7989 1.750778 CATGCCCGCAGAGGTAATTTT 59.249 47.619 0.00 0.00 38.74 1.82
6937 7990 2.791347 TGCCCGCAGAGGTAATTTTA 57.209 45.000 0.00 0.00 38.74 1.52
6938 7991 2.361789 TGCCCGCAGAGGTAATTTTAC 58.638 47.619 0.00 0.00 38.74 2.01
6939 7992 2.290387 TGCCCGCAGAGGTAATTTTACA 60.290 45.455 3.12 0.00 38.74 2.41
6940 7993 2.949644 GCCCGCAGAGGTAATTTTACAT 59.050 45.455 3.12 0.00 38.74 2.29
6941 7994 3.243068 GCCCGCAGAGGTAATTTTACATG 60.243 47.826 3.12 0.00 38.74 3.21
6942 7995 3.945285 CCCGCAGAGGTAATTTTACATGT 59.055 43.478 2.69 2.69 38.74 3.21
6943 7996 4.035208 CCCGCAGAGGTAATTTTACATGTC 59.965 45.833 0.00 0.00 38.74 3.06
6944 7997 4.035208 CCGCAGAGGTAATTTTACATGTCC 59.965 45.833 0.00 0.00 35.37 4.02
6945 7998 4.035208 CGCAGAGGTAATTTTACATGTCCC 59.965 45.833 0.00 0.00 35.37 4.46
6946 7999 5.193679 GCAGAGGTAATTTTACATGTCCCT 58.806 41.667 0.00 0.00 35.37 4.20
6947 8000 5.066505 GCAGAGGTAATTTTACATGTCCCTG 59.933 44.000 0.00 6.62 35.37 4.45
6948 8001 5.066505 CAGAGGTAATTTTACATGTCCCTGC 59.933 44.000 0.00 0.00 35.37 4.85
6949 8002 5.044846 AGAGGTAATTTTACATGTCCCTGCT 60.045 40.000 0.00 0.00 35.37 4.24
6950 8003 4.949856 AGGTAATTTTACATGTCCCTGCTG 59.050 41.667 0.00 0.00 35.37 4.41
6951 8004 4.097892 GGTAATTTTACATGTCCCTGCTGG 59.902 45.833 0.00 1.89 35.37 4.85
6952 8005 1.544724 TTTTACATGTCCCTGCTGGC 58.455 50.000 0.00 0.00 0.00 4.85
6953 8006 0.323360 TTTACATGTCCCTGCTGGCC 60.323 55.000 0.00 0.00 0.00 5.36
6954 8007 2.535485 TTACATGTCCCTGCTGGCCG 62.535 60.000 0.00 0.00 0.00 6.13
6961 8014 4.335647 CCTGCTGGCCGGTTCTGT 62.336 66.667 14.55 0.00 0.00 3.41
6962 8015 2.662596 CTGCTGGCCGGTTCTGTA 59.337 61.111 14.55 0.00 0.00 2.74
6963 8016 1.221840 CTGCTGGCCGGTTCTGTAT 59.778 57.895 14.55 0.00 0.00 2.29
6964 8017 0.811616 CTGCTGGCCGGTTCTGTATC 60.812 60.000 14.55 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
1 2 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
2 3 9.185192 GTATACTAGTGTAGTGTCAAAAACGTT 57.815 33.333 5.39 0.00 39.81 3.99
4 5 8.732413 TGTATACTAGTGTAGTGTCAAAAACG 57.268 34.615 5.39 0.00 39.81 3.60
8 9 9.184062 CGTTTTGTATACTAGTGTAGTGTCAAA 57.816 33.333 5.39 7.26 39.81 2.69
9 10 7.326789 GCGTTTTGTATACTAGTGTAGTGTCAA 59.673 37.037 5.39 1.21 39.81 3.18
10 11 6.803320 GCGTTTTGTATACTAGTGTAGTGTCA 59.197 38.462 5.39 0.00 39.81 3.58
11 12 7.025963 AGCGTTTTGTATACTAGTGTAGTGTC 58.974 38.462 5.39 0.00 39.81 3.67
12 13 6.917533 AGCGTTTTGTATACTAGTGTAGTGT 58.082 36.000 5.39 0.00 39.81 3.55
13 14 7.249147 AGAGCGTTTTGTATACTAGTGTAGTG 58.751 38.462 5.39 0.00 39.81 2.74
14 15 7.388460 AGAGCGTTTTGTATACTAGTGTAGT 57.612 36.000 5.39 0.00 42.68 2.73
15 16 9.947669 ATAAGAGCGTTTTGTATACTAGTGTAG 57.052 33.333 5.39 0.00 31.51 2.74
23 24 9.659830 CCCAAAATATAAGAGCGTTTTGTATAC 57.340 33.333 0.00 0.00 38.97 1.47
24 25 9.616156 TCCCAAAATATAAGAGCGTTTTGTATA 57.384 29.630 8.15 0.00 38.97 1.47
25 26 8.403236 GTCCCAAAATATAAGAGCGTTTTGTAT 58.597 33.333 8.15 0.00 38.97 2.29
26 27 7.413219 CGTCCCAAAATATAAGAGCGTTTTGTA 60.413 37.037 8.15 0.00 38.97 2.41
27 28 6.617879 GTCCCAAAATATAAGAGCGTTTTGT 58.382 36.000 8.15 0.00 38.97 2.83
28 29 5.737290 CGTCCCAAAATATAAGAGCGTTTTG 59.263 40.000 0.00 0.00 39.82 2.44
29 30 5.163693 CCGTCCCAAAATATAAGAGCGTTTT 60.164 40.000 0.00 0.00 0.00 2.43
30 31 4.334481 CCGTCCCAAAATATAAGAGCGTTT 59.666 41.667 0.00 0.00 0.00 3.60
31 32 3.875134 CCGTCCCAAAATATAAGAGCGTT 59.125 43.478 0.00 0.00 0.00 4.84
32 33 3.133362 TCCGTCCCAAAATATAAGAGCGT 59.867 43.478 0.00 0.00 0.00 5.07
33 34 3.724374 TCCGTCCCAAAATATAAGAGCG 58.276 45.455 0.00 0.00 0.00 5.03
34 35 4.065789 CCTCCGTCCCAAAATATAAGAGC 58.934 47.826 0.00 0.00 0.00 4.09
35 36 4.347000 TCCCTCCGTCCCAAAATATAAGAG 59.653 45.833 0.00 0.00 0.00 2.85
36 37 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
37 38 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
38 39 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
39 40 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
40 41 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
41 42 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
42 43 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
43 44 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
44 45 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
45 46 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
46 47 0.396695 GACATACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
47 48 0.396695 TGACATACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
48 49 0.745468 GTGACATACTCCCTCCGTCC 59.255 60.000 0.00 0.00 0.00 4.79
49 50 1.471119 TGTGACATACTCCCTCCGTC 58.529 55.000 0.00 0.00 0.00 4.79
50 51 1.933021 TTGTGACATACTCCCTCCGT 58.067 50.000 0.00 0.00 0.00 4.69
51 52 3.328382 TTTTGTGACATACTCCCTCCG 57.672 47.619 0.00 0.00 0.00 4.63
52 53 7.696992 TTTTATTTTGTGACATACTCCCTCC 57.303 36.000 0.00 0.00 0.00 4.30
71 72 7.168469 GGCACGCGGAATTACAATTTATTTTAT 59.832 33.333 12.47 0.00 0.00 1.40
140 141 2.726760 CTCATCTACTCCGCGCAAATAC 59.273 50.000 8.75 0.00 0.00 1.89
161 162 3.984193 CTAGCTGCACCACTGGCCC 62.984 68.421 0.00 0.00 0.00 5.80
162 163 2.262774 ATCTAGCTGCACCACTGGCC 62.263 60.000 1.02 0.00 0.00 5.36
163 164 0.813210 GATCTAGCTGCACCACTGGC 60.813 60.000 1.02 0.00 0.00 4.85
164 165 0.538584 TGATCTAGCTGCACCACTGG 59.461 55.000 1.02 0.00 0.00 4.00
165 166 1.472904 CCTGATCTAGCTGCACCACTG 60.473 57.143 1.02 0.00 0.00 3.66
166 167 0.829333 CCTGATCTAGCTGCACCACT 59.171 55.000 1.02 0.00 0.00 4.00
167 168 0.539051 ACCTGATCTAGCTGCACCAC 59.461 55.000 1.02 0.00 0.00 4.16
168 169 1.279496 AACCTGATCTAGCTGCACCA 58.721 50.000 1.02 0.00 0.00 4.17
169 170 2.012673 CAAACCTGATCTAGCTGCACC 58.987 52.381 1.02 0.00 0.00 5.01
170 171 2.012673 CCAAACCTGATCTAGCTGCAC 58.987 52.381 1.02 0.00 0.00 4.57
171 172 1.630369 ACCAAACCTGATCTAGCTGCA 59.370 47.619 1.02 0.00 0.00 4.41
172 173 2.012673 CACCAAACCTGATCTAGCTGC 58.987 52.381 0.00 0.00 0.00 5.25
454 583 5.488262 AACAGCCTGGAATAAAATTTGCT 57.512 34.783 0.00 0.00 0.00 3.91
455 584 6.427853 AGAAAACAGCCTGGAATAAAATTTGC 59.572 34.615 0.00 0.00 0.00 3.68
543 672 5.277828 CGCTATAAGAATAACCAAAGGCACC 60.278 44.000 0.00 0.00 0.00 5.01
547 676 6.937436 AACCGCTATAAGAATAACCAAAGG 57.063 37.500 0.00 0.00 0.00 3.11
553 682 7.218204 CAGCAAACAAACCGCTATAAGAATAAC 59.782 37.037 0.00 0.00 33.82 1.89
631 760 6.101150 ACAGCATATTCCATTCTACCAGGTTA 59.899 38.462 0.00 0.00 0.00 2.85
679 808 5.279384 ACGCATACAGGTAGACTATTTTCG 58.721 41.667 0.00 0.00 0.00 3.46
726 855 6.126361 ACAATCCTTAAGCCCTAGAACATCAT 60.126 38.462 0.00 0.00 0.00 2.45
798 927 4.268644 GTGTACTATACAGTCGTGCGAGTA 59.731 45.833 1.37 0.00 39.77 2.59
818 947 1.152963 AACGCAAGAGCCCAAGTGT 60.153 52.632 0.00 0.00 43.62 3.55
1121 1392 4.275810 AGCATAGATGATTTGCACCTGTT 58.724 39.130 0.00 0.00 38.84 3.16
1305 1576 4.202060 CCATACTCACAGTACAGCCTGTAG 60.202 50.000 4.44 0.00 43.70 2.74
1563 1834 0.250295 CTTCAGGCGGAACCAACTCA 60.250 55.000 0.00 0.00 43.14 3.41
1629 1900 2.819019 CACCATTGCATTCAGTGTACCA 59.181 45.455 0.00 0.00 0.00 3.25
1641 1912 3.368635 GGATTTCAGCATTCACCATTGCA 60.369 43.478 0.00 0.00 41.35 4.08
2155 2426 1.955778 CCACTGACAAAGACAATGGCA 59.044 47.619 0.00 0.00 33.92 4.92
2275 2546 3.490348 CCCATGTTTCCTCAAACTCTGT 58.510 45.455 0.00 0.00 42.29 3.41
2669 2940 4.142381 GCATTTCCTGGTATGAAGTTCCAC 60.142 45.833 13.26 0.00 0.00 4.02
2752 3023 5.221581 TGGTAGAGGTGTCAAGGAAAACTAC 60.222 44.000 0.00 0.00 0.00 2.73
3285 3557 7.492994 GCAAAACCACTTGTTTAACATTTCCTA 59.507 33.333 0.00 0.00 46.39 2.94
3429 3701 3.996150 AAAGCACAAGACTCAATGGTG 57.004 42.857 0.00 0.00 0.00 4.17
3553 3825 8.651589 TCATATACCTAAATACTCCCTCTGTG 57.348 38.462 0.00 0.00 0.00 3.66
3992 4265 1.075600 GAGGGGGAGAGACTGGGAG 60.076 68.421 0.00 0.00 0.00 4.30
4208 4481 1.902918 GTGTGTTGCTGCCCCATGA 60.903 57.895 0.00 0.00 0.00 3.07
4229 4502 1.139058 AGCCTACATTGTCCCGATGTC 59.861 52.381 0.45 0.00 39.06 3.06
4235 4508 0.253044 TGAGCAGCCTACATTGTCCC 59.747 55.000 0.00 0.00 0.00 4.46
4260 4533 4.339530 CGGACTGAGTGAGATTTCCAGATA 59.660 45.833 0.00 0.00 0.00 1.98
4283 4556 2.927477 TCAGGCGACATGTTTATCGAAC 59.073 45.455 8.68 1.30 40.86 3.95
4286 4559 2.348872 GCATCAGGCGACATGTTTATCG 60.349 50.000 0.00 0.00 41.32 2.92
4322 4595 6.801539 TCAAACTGCTTACTTGACCTATTG 57.198 37.500 0.00 0.00 0.00 1.90
4324 4597 7.224297 TCTTTCAAACTGCTTACTTGACCTAT 58.776 34.615 0.00 0.00 0.00 2.57
4341 4614 7.995289 TGCTTCATCAACTACTTTCTTTCAAA 58.005 30.769 0.00 0.00 0.00 2.69
4407 4683 7.039574 TGTCAGATCACATTGAAACCAATTGAT 60.040 33.333 7.12 0.00 36.14 2.57
4424 4700 0.462581 GCAAGCCCGATGTCAGATCA 60.463 55.000 0.00 0.00 0.00 2.92
4675 4951 2.637872 TGACATTTCTTTCCCGTCTCCT 59.362 45.455 0.00 0.00 0.00 3.69
4807 5083 8.830201 TTTGTATTGAGTAAAATTGCAGCATT 57.170 26.923 0.00 0.00 0.00 3.56
4914 5190 0.391661 CCTTGTATGCTCACGGCTGT 60.392 55.000 0.00 0.00 42.39 4.40
4923 5199 0.469917 CCCGATGACCCTTGTATGCT 59.530 55.000 0.00 0.00 0.00 3.79
4955 5248 7.941238 AGCAACATCAACAATAGGCTAATAGAT 59.059 33.333 0.00 0.00 0.00 1.98
5028 5977 5.007528 GCTGTGAGGAAAGAATAAGATGCTC 59.992 44.000 0.00 0.00 0.00 4.26
5068 6019 1.952367 GCCTACAGCCTGCTTTCACAT 60.952 52.381 0.00 0.00 34.35 3.21
5217 6169 9.813446 AACTTCTTATATTTAGTTACGGAGGTG 57.187 33.333 0.00 0.00 0.00 4.00
5299 6264 6.131961 AGCTAGCCATCAGAAATACCAAAAT 58.868 36.000 12.13 0.00 0.00 1.82
5373 6338 3.601443 ACTTCCTTCTCTTCATCCGTG 57.399 47.619 0.00 0.00 0.00 4.94
5374 6339 3.307059 CCAACTTCCTTCTCTTCATCCGT 60.307 47.826 0.00 0.00 0.00 4.69
5389 6354 5.118990 TCGATTTCATCCATCTCCAACTTC 58.881 41.667 0.00 0.00 0.00 3.01
5398 6363 5.923684 GTCTCCTACTTCGATTTCATCCATC 59.076 44.000 0.00 0.00 0.00 3.51
5460 6425 9.710979 CTTCGTTTTTATGTTCTTCTACAAACA 57.289 29.630 0.00 0.00 39.52 2.83
5461 6426 9.166126 CCTTCGTTTTTATGTTCTTCTACAAAC 57.834 33.333 0.00 0.00 0.00 2.93
5477 6442 6.062095 TCCTTGATTTCTCTCCTTCGTTTTT 58.938 36.000 0.00 0.00 0.00 1.94
5539 6505 8.879342 ATACAATAGCTACAGATGACTTCAAC 57.121 34.615 0.00 0.00 0.00 3.18
5542 6508 9.757227 AGAAATACAATAGCTACAGATGACTTC 57.243 33.333 0.00 0.00 0.00 3.01
5565 6531 9.677567 GACAAGAAATTGCTAACAACATAAGAA 57.322 29.630 0.00 0.00 38.99 2.52
5566 6532 8.296713 GGACAAGAAATTGCTAACAACATAAGA 58.703 33.333 0.00 0.00 38.99 2.10
5567 6533 7.542130 GGGACAAGAAATTGCTAACAACATAAG 59.458 37.037 0.00 0.00 38.99 1.73
5568 6534 7.232534 AGGGACAAGAAATTGCTAACAACATAA 59.767 33.333 0.00 0.00 38.99 1.90
5569 6535 6.719370 AGGGACAAGAAATTGCTAACAACATA 59.281 34.615 0.00 0.00 38.99 2.29
5570 6536 5.539955 AGGGACAAGAAATTGCTAACAACAT 59.460 36.000 0.00 0.00 38.99 2.71
5571 6537 4.892934 AGGGACAAGAAATTGCTAACAACA 59.107 37.500 0.00 0.00 38.99 3.33
5572 6538 5.453567 AGGGACAAGAAATTGCTAACAAC 57.546 39.130 0.00 0.00 38.99 3.32
5573 6539 6.303839 AGTAGGGACAAGAAATTGCTAACAA 58.696 36.000 0.00 0.00 40.87 2.83
5574 6540 5.876357 AGTAGGGACAAGAAATTGCTAACA 58.124 37.500 0.00 0.00 0.00 2.41
5575 6541 5.938125 TGAGTAGGGACAAGAAATTGCTAAC 59.062 40.000 0.00 0.00 0.00 2.34
5576 6542 6.121776 TGAGTAGGGACAAGAAATTGCTAA 57.878 37.500 0.00 0.00 0.00 3.09
5577 6543 5.755409 TGAGTAGGGACAAGAAATTGCTA 57.245 39.130 0.00 0.00 0.00 3.49
5578 6544 4.640771 TGAGTAGGGACAAGAAATTGCT 57.359 40.909 0.00 0.00 0.00 3.91
5579 6545 4.762251 ACTTGAGTAGGGACAAGAAATTGC 59.238 41.667 12.69 0.00 43.98 3.56
5580 6546 5.335191 GCACTTGAGTAGGGACAAGAAATTG 60.335 44.000 12.69 3.34 43.98 2.32
5581 6547 4.762251 GCACTTGAGTAGGGACAAGAAATT 59.238 41.667 12.69 0.00 43.98 1.82
5582 6548 4.327680 GCACTTGAGTAGGGACAAGAAAT 58.672 43.478 12.69 0.00 43.98 2.17
5583 6549 3.496160 GGCACTTGAGTAGGGACAAGAAA 60.496 47.826 12.69 0.00 43.98 2.52
5584 6550 2.038557 GGCACTTGAGTAGGGACAAGAA 59.961 50.000 12.69 0.00 43.98 2.52
5585 6551 1.623811 GGCACTTGAGTAGGGACAAGA 59.376 52.381 12.69 0.00 43.98 3.02
5586 6552 1.347707 TGGCACTTGAGTAGGGACAAG 59.652 52.381 0.00 0.00 44.38 3.16
5587 6553 1.429930 TGGCACTTGAGTAGGGACAA 58.570 50.000 0.00 0.00 44.38 3.18
5588 6554 3.157518 TGGCACTTGAGTAGGGACA 57.842 52.632 0.00 0.00 45.48 4.02
5589 6555 1.407437 CCATGGCACTTGAGTAGGGAC 60.407 57.143 0.00 0.00 35.00 4.46
5590 6556 0.911769 CCATGGCACTTGAGTAGGGA 59.088 55.000 0.00 0.00 0.00 4.20
5591 6557 0.107017 CCCATGGCACTTGAGTAGGG 60.107 60.000 6.09 0.00 0.00 3.53
5592 6558 0.620556 ACCCATGGCACTTGAGTAGG 59.379 55.000 6.09 0.00 0.00 3.18
5593 6559 3.845781 ATACCCATGGCACTTGAGTAG 57.154 47.619 6.09 0.00 0.00 2.57
5594 6560 5.397447 CCTTAATACCCATGGCACTTGAGTA 60.397 44.000 6.09 1.41 0.00 2.59
5595 6561 4.526970 CTTAATACCCATGGCACTTGAGT 58.473 43.478 6.09 0.00 0.00 3.41
5596 6562 3.885297 CCTTAATACCCATGGCACTTGAG 59.115 47.826 6.09 4.89 0.00 3.02
5597 6563 3.372566 CCCTTAATACCCATGGCACTTGA 60.373 47.826 6.09 0.00 0.00 3.02
5598 6564 2.958355 CCCTTAATACCCATGGCACTTG 59.042 50.000 6.09 0.00 0.00 3.16
5599 6565 2.091333 CCCCTTAATACCCATGGCACTT 60.091 50.000 6.09 1.07 0.00 3.16
5600 6566 1.499007 CCCCTTAATACCCATGGCACT 59.501 52.381 6.09 0.00 0.00 4.40
5601 6567 1.480498 CCCCCTTAATACCCATGGCAC 60.480 57.143 6.09 0.00 0.00 5.01
5602 6568 0.856982 CCCCCTTAATACCCATGGCA 59.143 55.000 6.09 0.00 0.00 4.92
5603 6569 0.857675 ACCCCCTTAATACCCATGGC 59.142 55.000 6.09 0.00 0.00 4.40
5604 6570 1.856920 ACACCCCCTTAATACCCATGG 59.143 52.381 4.14 4.14 0.00 3.66
5605 6571 3.680777 AACACCCCCTTAATACCCATG 57.319 47.619 0.00 0.00 0.00 3.66
5606 6572 3.310288 CCAAACACCCCCTTAATACCCAT 60.310 47.826 0.00 0.00 0.00 4.00
5607 6573 2.043252 CCAAACACCCCCTTAATACCCA 59.957 50.000 0.00 0.00 0.00 4.51
5608 6574 2.043389 ACCAAACACCCCCTTAATACCC 59.957 50.000 0.00 0.00 0.00 3.69
5609 6575 3.461378 ACCAAACACCCCCTTAATACC 57.539 47.619 0.00 0.00 0.00 2.73
5610 6576 3.765511 GGAACCAAACACCCCCTTAATAC 59.234 47.826 0.00 0.00 0.00 1.89
5611 6577 3.401683 TGGAACCAAACACCCCCTTAATA 59.598 43.478 0.00 0.00 0.00 0.98
5612 6578 2.180308 TGGAACCAAACACCCCCTTAAT 59.820 45.455 0.00 0.00 0.00 1.40
5613 6579 1.574339 TGGAACCAAACACCCCCTTAA 59.426 47.619 0.00 0.00 0.00 1.85
5614 6580 1.232909 TGGAACCAAACACCCCCTTA 58.767 50.000 0.00 0.00 0.00 2.69
5615 6581 0.340208 TTGGAACCAAACACCCCCTT 59.660 50.000 3.62 0.00 32.44 3.95
5616 6582 0.397957 GTTGGAACCAAACACCCCCT 60.398 55.000 7.89 0.00 37.70 4.79
5617 6583 0.688087 TGTTGGAACCAAACACCCCC 60.688 55.000 7.89 0.00 37.70 5.40
5618 6584 0.462375 GTGTTGGAACCAAACACCCC 59.538 55.000 18.87 5.74 37.70 4.95
5619 6585 1.187087 TGTGTTGGAACCAAACACCC 58.813 50.000 22.83 9.21 37.26 4.61
5620 6586 3.320673 TTTGTGTTGGAACCAAACACC 57.679 42.857 22.83 9.47 37.26 4.16
5639 6605 4.468153 TGTTTGGTTTGCTAGGGACTTTTT 59.532 37.500 0.00 0.00 41.75 1.94
5640 6606 4.027437 TGTTTGGTTTGCTAGGGACTTTT 58.973 39.130 0.00 0.00 41.75 2.27
5641 6607 3.636764 CTGTTTGGTTTGCTAGGGACTTT 59.363 43.478 0.00 0.00 41.75 2.66
5642 6608 3.222603 CTGTTTGGTTTGCTAGGGACTT 58.777 45.455 0.00 0.00 41.75 3.01
5643 6609 2.489073 CCTGTTTGGTTTGCTAGGGACT 60.489 50.000 0.00 0.00 46.37 3.85
5644 6610 1.886542 CCTGTTTGGTTTGCTAGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
5645 6611 1.203001 CCCTGTTTGGTTTGCTAGGGA 60.203 52.381 0.00 0.00 46.19 4.20
5646 6612 1.256812 CCCTGTTTGGTTTGCTAGGG 58.743 55.000 0.00 0.00 38.96 3.53
5647 6613 1.613437 CACCCTGTTTGGTTTGCTAGG 59.387 52.381 0.00 0.00 36.12 3.02
5648 6614 1.613437 CCACCCTGTTTGGTTTGCTAG 59.387 52.381 0.00 0.00 36.12 3.42
5649 6615 1.698506 CCACCCTGTTTGGTTTGCTA 58.301 50.000 0.00 0.00 36.12 3.49
5650 6616 1.048160 CCCACCCTGTTTGGTTTGCT 61.048 55.000 0.00 0.00 36.12 3.91
5651 6617 1.045911 TCCCACCCTGTTTGGTTTGC 61.046 55.000 0.00 0.00 36.12 3.68
5652 6618 0.750249 GTCCCACCCTGTTTGGTTTG 59.250 55.000 0.00 0.00 36.12 2.93
5653 6619 0.634465 AGTCCCACCCTGTTTGGTTT 59.366 50.000 0.00 0.00 36.12 3.27
5654 6620 0.634465 AAGTCCCACCCTGTTTGGTT 59.366 50.000 0.00 0.00 36.12 3.67
5655 6621 0.634465 AAAGTCCCACCCTGTTTGGT 59.366 50.000 0.00 0.00 39.96 3.67
5656 6622 1.788229 AAAAGTCCCACCCTGTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
5683 6649 7.200455 GTGCTTCTAAGGACTTTTAGCAAAAA 58.800 34.615 7.07 0.00 43.15 1.94
5684 6650 6.238925 GGTGCTTCTAAGGACTTTTAGCAAAA 60.239 38.462 13.12 0.00 45.42 2.44
5685 6651 5.240844 GGTGCTTCTAAGGACTTTTAGCAAA 59.759 40.000 13.12 0.00 45.42 3.68
5686 6652 4.760204 GGTGCTTCTAAGGACTTTTAGCAA 59.240 41.667 13.12 1.75 45.42 3.91
5687 6653 4.041691 AGGTGCTTCTAAGGACTTTTAGCA 59.958 41.667 13.12 9.74 45.42 3.49
5688 6654 4.580868 AGGTGCTTCTAAGGACTTTTAGC 58.419 43.478 13.12 0.00 45.42 3.09
5689 6655 5.046231 AGGAGGTGCTTCTAAGGACTTTTAG 60.046 44.000 13.12 0.00 45.42 1.85
5690 6656 4.844655 AGGAGGTGCTTCTAAGGACTTTTA 59.155 41.667 13.12 0.00 45.42 1.52
5691 6657 3.653352 AGGAGGTGCTTCTAAGGACTTTT 59.347 43.478 13.12 1.47 45.42 2.27
5692 6658 3.252351 AGGAGGTGCTTCTAAGGACTTT 58.748 45.455 13.12 3.63 45.42 2.66
5693 6659 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
5694 6660 2.569404 CAAGGAGGTGCTTCTAAGGACT 59.431 50.000 13.12 1.24 45.42 3.85
5695 6661 2.567615 TCAAGGAGGTGCTTCTAAGGAC 59.432 50.000 5.86 5.86 45.39 3.85
5696 6662 2.834549 CTCAAGGAGGTGCTTCTAAGGA 59.165 50.000 0.00 0.00 0.00 3.36
5697 6663 2.834549 TCTCAAGGAGGTGCTTCTAAGG 59.165 50.000 0.00 0.00 0.00 2.69
5698 6664 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
5699 6665 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
5700 6666 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
5701 6667 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
5702 6668 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
5703 6669 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
5704 6670 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
5705 6671 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
5706 6672 4.708177 TGAAAAAGACTCTCAAGGAGGTG 58.292 43.478 0.00 0.00 45.83 4.00
5707 6673 5.373812 TTGAAAAAGACTCTCAAGGAGGT 57.626 39.130 0.00 0.00 45.83 3.85
5708 6674 6.699575 TTTTGAAAAAGACTCTCAAGGAGG 57.300 37.500 0.00 0.00 45.83 4.30
5709 6675 7.766283 ACTTTTTGAAAAAGACTCTCAAGGAG 58.234 34.615 30.55 6.52 46.87 3.69
5710 6676 7.148069 GGACTTTTTGAAAAAGACTCTCAAGGA 60.148 37.037 30.55 0.00 31.11 3.36
5711 6677 6.975197 GGACTTTTTGAAAAAGACTCTCAAGG 59.025 38.462 30.55 7.27 31.11 3.61
5712 6678 6.975197 GGGACTTTTTGAAAAAGACTCTCAAG 59.025 38.462 30.55 7.82 31.11 3.02
5713 6679 6.435904 TGGGACTTTTTGAAAAAGACTCTCAA 59.564 34.615 30.55 11.11 0.00 3.02
5714 6680 5.949354 TGGGACTTTTTGAAAAAGACTCTCA 59.051 36.000 30.55 22.55 0.00 3.27
5715 6681 6.451064 TGGGACTTTTTGAAAAAGACTCTC 57.549 37.500 30.55 20.65 0.00 3.20
5716 6682 5.360999 CCTGGGACTTTTTGAAAAAGACTCT 59.639 40.000 30.55 12.96 0.00 3.24
5717 6683 5.451937 CCCTGGGACTTTTTGAAAAAGACTC 60.452 44.000 30.55 25.34 0.00 3.36
5718 6684 4.405680 CCCTGGGACTTTTTGAAAAAGACT 59.594 41.667 30.55 13.94 0.00 3.24
5719 6685 4.404394 TCCCTGGGACTTTTTGAAAAAGAC 59.596 41.667 30.55 24.86 0.00 3.01
5720 6686 4.615513 TCCCTGGGACTTTTTGAAAAAGA 58.384 39.130 30.55 12.07 0.00 2.52
5752 6718 4.771054 TGTTTGGTTCTCTAGTCCTAGGAC 59.229 45.833 31.29 31.29 44.86 3.85
5753 6719 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
5754 6720 4.081586 GGTGTTTGGTTCTCTAGTCCTAGG 60.082 50.000 0.82 0.82 34.06 3.02
5755 6721 4.527038 TGGTGTTTGGTTCTCTAGTCCTAG 59.473 45.833 0.00 0.00 34.56 3.02
5756 6722 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
5757 6723 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
5758 6724 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
5759 6725 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
5760 6726 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
5761 6727 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
5762 6728 5.633655 TTTAGGTGGTGTTTGGTTCTCTA 57.366 39.130 0.00 0.00 0.00 2.43
5763 6729 4.513406 TTTAGGTGGTGTTTGGTTCTCT 57.487 40.909 0.00 0.00 0.00 3.10
5764 6730 5.070685 AGATTTAGGTGGTGTTTGGTTCTC 58.929 41.667 0.00 0.00 0.00 2.87
5765 6731 5.061721 AGATTTAGGTGGTGTTTGGTTCT 57.938 39.130 0.00 0.00 0.00 3.01
5766 6732 4.217767 GGAGATTTAGGTGGTGTTTGGTTC 59.782 45.833 0.00 0.00 0.00 3.62
5767 6733 4.149598 GGAGATTTAGGTGGTGTTTGGTT 58.850 43.478 0.00 0.00 0.00 3.67
5768 6734 3.139397 TGGAGATTTAGGTGGTGTTTGGT 59.861 43.478 0.00 0.00 0.00 3.67
5769 6735 3.758554 CTGGAGATTTAGGTGGTGTTTGG 59.241 47.826 0.00 0.00 0.00 3.28
5770 6736 4.651778 TCTGGAGATTTAGGTGGTGTTTG 58.348 43.478 0.00 0.00 0.00 2.93
5771 6737 4.993705 TCTGGAGATTTAGGTGGTGTTT 57.006 40.909 0.00 0.00 0.00 2.83
5772 6738 5.131142 CCTATCTGGAGATTTAGGTGGTGTT 59.869 44.000 0.00 0.00 38.35 3.32
5773 6739 4.656112 CCTATCTGGAGATTTAGGTGGTGT 59.344 45.833 0.00 0.00 38.35 4.16
5774 6740 4.040952 CCCTATCTGGAGATTTAGGTGGTG 59.959 50.000 0.00 0.00 38.35 4.17
5775 6741 4.077982 TCCCTATCTGGAGATTTAGGTGGT 60.078 45.833 0.00 0.00 38.35 4.16
5776 6742 4.493618 TCCCTATCTGGAGATTTAGGTGG 58.506 47.826 0.00 0.00 38.35 4.61
5787 6753 2.333069 CATGGCTTCTCCCTATCTGGA 58.667 52.381 0.00 0.00 38.35 3.86
5788 6754 1.271271 GCATGGCTTCTCCCTATCTGG 60.271 57.143 0.00 0.00 0.00 3.86
5789 6755 1.698532 AGCATGGCTTCTCCCTATCTG 59.301 52.381 0.00 0.00 33.89 2.90
5790 6756 1.698532 CAGCATGGCTTCTCCCTATCT 59.301 52.381 0.00 0.00 36.40 1.98
5791 6757 1.881498 GCAGCATGGCTTCTCCCTATC 60.881 57.143 0.00 0.00 36.40 2.08
5792 6758 0.110104 GCAGCATGGCTTCTCCCTAT 59.890 55.000 0.00 0.00 36.40 2.57
5793 6759 0.984961 AGCAGCATGGCTTCTCCCTA 60.985 55.000 0.00 0.00 42.71 3.53
5794 6760 2.274760 GCAGCATGGCTTCTCCCT 59.725 61.111 0.00 0.00 36.40 4.20
5795 6761 2.274760 AGCAGCATGGCTTCTCCC 59.725 61.111 0.00 0.00 42.71 4.30
5834 6800 9.114952 TGAATGTGAGAAACTTAACAACATACA 57.885 29.630 0.00 0.00 0.00 2.29
5848 6814 4.761739 GTCAGGGTTCATGAATGTGAGAAA 59.238 41.667 12.12 0.00 0.00 2.52
5850 6816 3.327464 TGTCAGGGTTCATGAATGTGAGA 59.673 43.478 12.12 10.29 0.00 3.27
5882 6848 1.270518 GGATGGACTGCGTCATATGCT 60.271 52.381 10.14 0.00 33.68 3.79
6006 6978 5.636121 CAGCTTAGTATTCAACACACCGTAA 59.364 40.000 0.00 0.00 0.00 3.18
6007 6979 5.165676 CAGCTTAGTATTCAACACACCGTA 58.834 41.667 0.00 0.00 0.00 4.02
6008 6980 3.994392 CAGCTTAGTATTCAACACACCGT 59.006 43.478 0.00 0.00 0.00 4.83
6009 6981 3.994392 ACAGCTTAGTATTCAACACACCG 59.006 43.478 0.00 0.00 0.00 4.94
6011 6983 7.596749 ACATACAGCTTAGTATTCAACACAC 57.403 36.000 0.00 0.00 32.56 3.82
6012 6984 7.979537 CCTACATACAGCTTAGTATTCAACACA 59.020 37.037 0.00 0.00 32.56 3.72
6013 6985 7.980099 ACCTACATACAGCTTAGTATTCAACAC 59.020 37.037 0.00 0.00 32.56 3.32
6014 6986 8.074613 ACCTACATACAGCTTAGTATTCAACA 57.925 34.615 0.00 0.00 32.56 3.33
6015 6987 8.414778 AGACCTACATACAGCTTAGTATTCAAC 58.585 37.037 0.00 0.00 32.56 3.18
6017 6989 7.230913 GGAGACCTACATACAGCTTAGTATTCA 59.769 40.741 0.00 0.00 32.56 2.57
6022 6996 5.132043 AGGAGACCTACATACAGCTTAGT 57.868 43.478 0.00 0.00 28.47 2.24
6052 7026 5.818136 TCTGGTACATCAATTAGCAAAGC 57.182 39.130 0.00 0.00 38.20 3.51
6056 7030 8.978874 AATTACATCTGGTACATCAATTAGCA 57.021 30.769 0.00 0.00 38.20 3.49
6100 7074 4.820897 TCTACTGCACAATACTTCCACTG 58.179 43.478 0.00 0.00 0.00 3.66
6120 7094 6.077322 AGATGCTCTTAGCTCCTAATTCTCT 58.923 40.000 0.00 0.00 42.97 3.10
6309 7362 7.663081 ACTCTTTCTCTGCTAATGAAATGAACA 59.337 33.333 0.00 0.00 0.00 3.18
6330 7383 5.652014 TGATCAACACTTGTTTTCCACTCTT 59.348 36.000 0.00 0.00 35.83 2.85
6335 7388 5.417266 TCACTTGATCAACACTTGTTTTCCA 59.583 36.000 3.38 0.00 35.83 3.53
6359 7412 2.119484 TTTCTTCCCGCACCACCGAT 62.119 55.000 0.00 0.00 0.00 4.18
6382 7435 8.957466 GGAAATTCTAGGCTAGTTTTGTACATT 58.043 33.333 20.45 5.23 0.00 2.71
6384 7437 7.686434 AGGAAATTCTAGGCTAGTTTTGTACA 58.314 34.615 20.45 0.00 0.00 2.90
6508 7561 1.227527 CACCAACGCCTGTCACTGA 60.228 57.895 0.00 0.00 0.00 3.41
6510 7563 0.603707 CATCACCAACGCCTGTCACT 60.604 55.000 0.00 0.00 0.00 3.41
6512 7565 1.965930 GCATCACCAACGCCTGTCA 60.966 57.895 0.00 0.00 0.00 3.58
6522 7575 0.035152 ATTCGCCAGAAGCATCACCA 60.035 50.000 0.00 0.00 44.04 4.17
6554 7607 0.661187 CACAATGCGTGCACCTTCAC 60.661 55.000 12.15 0.00 39.19 3.18
6579 7632 1.080298 GTTGCTTGGCACATCTGGC 60.080 57.895 0.00 0.00 38.71 4.85
6661 7714 2.613814 CTACGACGGTCGAGCTCACG 62.614 65.000 34.40 16.66 43.74 4.35
6665 7718 1.642952 GGAACTACGACGGTCGAGCT 61.643 60.000 34.40 18.64 43.74 4.09
6677 7730 1.607148 GGTTTGGTGCACAGGAACTAC 59.393 52.381 20.43 6.10 36.02 2.73
6729 7782 4.465446 CCCCGCCTCTCCTCCAGA 62.465 72.222 0.00 0.00 0.00 3.86
6754 7807 4.507916 TCCTCCTCTCCTCCGGCG 62.508 72.222 0.00 0.00 0.00 6.46
6755 7808 2.520741 CTCCTCCTCTCCTCCGGC 60.521 72.222 0.00 0.00 0.00 6.13
6756 7809 2.197324 CCTCCTCCTCTCCTCCGG 59.803 72.222 0.00 0.00 0.00 5.14
6757 7810 2.197324 CCCTCCTCCTCTCCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
6758 7811 1.231928 GACCCTCCTCCTCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
6759 7812 0.106217 CTGACCCTCCTCCTCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
6760 7813 1.589399 CCTGACCCTCCTCCTCTCCT 61.589 65.000 0.00 0.00 0.00 3.69
6761 7814 1.075600 CCTGACCCTCCTCCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
6762 7815 0.396556 GACCTGACCCTCCTCCTCTC 60.397 65.000 0.00 0.00 0.00 3.20
6763 7816 1.700985 GACCTGACCCTCCTCCTCT 59.299 63.158 0.00 0.00 0.00 3.69
6764 7817 1.755008 CGACCTGACCCTCCTCCTC 60.755 68.421 0.00 0.00 0.00 3.71
6765 7818 2.360980 CGACCTGACCCTCCTCCT 59.639 66.667 0.00 0.00 0.00 3.69
6766 7819 3.462678 GCGACCTGACCCTCCTCC 61.463 72.222 0.00 0.00 0.00 4.30
6767 7820 3.827898 CGCGACCTGACCCTCCTC 61.828 72.222 0.00 0.00 0.00 3.71
6787 7840 3.151022 CTCCTCCCCTCCAGCGAC 61.151 72.222 0.00 0.00 0.00 5.19
6788 7841 4.465446 CCTCCTCCCCTCCAGCGA 62.465 72.222 0.00 0.00 0.00 4.93
6815 7868 4.507916 TCCTCCTCTCCTCCGGCG 62.508 72.222 0.00 0.00 0.00 6.46
6816 7869 2.520741 CTCCTCCTCTCCTCCGGC 60.521 72.222 0.00 0.00 0.00 6.13
6817 7870 2.197324 CCTCCTCCTCTCCTCCGG 59.803 72.222 0.00 0.00 0.00 5.14
6818 7871 2.197324 CCCTCCTCCTCTCCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
6819 7872 1.231928 GTCCCTCCTCCTCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
6820 7873 0.396556 GTGTCCCTCCTCCTCTCCTC 60.397 65.000 0.00 0.00 0.00 3.71
6821 7874 1.149782 TGTGTCCCTCCTCCTCTCCT 61.150 60.000 0.00 0.00 0.00 3.69
6822 7875 0.973496 GTGTGTCCCTCCTCCTCTCC 60.973 65.000 0.00 0.00 0.00 3.71
6823 7876 0.973496 GGTGTGTCCCTCCTCCTCTC 60.973 65.000 0.00 0.00 0.00 3.20
6824 7877 1.079438 GGTGTGTCCCTCCTCCTCT 59.921 63.158 0.00 0.00 0.00 3.69
6825 7878 2.352032 CGGTGTGTCCCTCCTCCTC 61.352 68.421 0.00 0.00 0.00 3.71
6826 7879 2.283966 CGGTGTGTCCCTCCTCCT 60.284 66.667 0.00 0.00 0.00 3.69
6827 7880 4.083862 GCGGTGTGTCCCTCCTCC 62.084 72.222 0.00 0.00 0.00 4.30
6828 7881 4.083862 GGCGGTGTGTCCCTCCTC 62.084 72.222 0.00 0.00 0.00 3.71
6829 7882 4.954118 TGGCGGTGTGTCCCTCCT 62.954 66.667 0.00 0.00 0.00 3.69
6830 7883 4.699522 GTGGCGGTGTGTCCCTCC 62.700 72.222 0.00 0.00 0.00 4.30
6831 7884 3.626924 AGTGGCGGTGTGTCCCTC 61.627 66.667 0.00 0.00 0.00 4.30
6832 7885 3.941188 CAGTGGCGGTGTGTCCCT 61.941 66.667 0.00 0.00 0.00 4.20
6843 7896 3.482783 GAACGAGCTCGCAGTGGC 61.483 66.667 34.83 14.35 44.43 5.01
6844 7897 2.811317 GGAACGAGCTCGCAGTGG 60.811 66.667 34.83 9.33 44.43 4.00
6857 7910 1.153804 GACTTCTCCTCGGCGGAAC 60.154 63.158 7.21 0.00 42.53 3.62
6858 7911 2.348888 GGACTTCTCCTCGGCGGAA 61.349 63.158 7.21 1.10 42.53 4.30
6859 7912 2.754658 GGACTTCTCCTCGGCGGA 60.755 66.667 7.21 0.00 40.30 5.54
6860 7913 2.356818 GATGGACTTCTCCTCGGCGG 62.357 65.000 7.21 0.00 37.48 6.13
6861 7914 1.066587 GATGGACTTCTCCTCGGCG 59.933 63.158 0.00 0.00 37.48 6.46
6862 7915 1.066587 CGATGGACTTCTCCTCGGC 59.933 63.158 0.00 0.00 37.48 5.54
6863 7916 0.818296 AACGATGGACTTCTCCTCGG 59.182 55.000 0.00 0.00 39.56 4.63
6864 7917 1.914634 CAACGATGGACTTCTCCTCG 58.085 55.000 0.00 6.91 40.36 4.63
6865 7918 1.646189 GCAACGATGGACTTCTCCTC 58.354 55.000 0.00 0.00 37.48 3.71
6866 7919 0.250513 GGCAACGATGGACTTCTCCT 59.749 55.000 0.00 0.00 37.48 3.69
6867 7920 2.768834 GGCAACGATGGACTTCTCC 58.231 57.895 0.00 0.00 37.04 3.71
6880 7933 0.960364 TCTCCTTCAATGGCGGCAAC 60.960 55.000 18.31 0.00 0.00 4.17
6881 7934 0.677731 CTCTCCTTCAATGGCGGCAA 60.678 55.000 18.31 0.00 0.00 4.52
6882 7935 1.078214 CTCTCCTTCAATGGCGGCA 60.078 57.895 16.34 16.34 0.00 5.69
6883 7936 0.392998 TTCTCTCCTTCAATGGCGGC 60.393 55.000 0.00 0.00 0.00 6.53
6884 7937 2.113860 TTTCTCTCCTTCAATGGCGG 57.886 50.000 0.00 0.00 0.00 6.13
6885 7938 2.286294 CGATTTCTCTCCTTCAATGGCG 59.714 50.000 0.00 0.00 0.00 5.69
6886 7939 2.032675 GCGATTTCTCTCCTTCAATGGC 59.967 50.000 0.00 0.00 0.00 4.40
6887 7940 2.615912 GGCGATTTCTCTCCTTCAATGG 59.384 50.000 0.00 0.00 0.00 3.16
6888 7941 3.539604 AGGCGATTTCTCTCCTTCAATG 58.460 45.455 0.00 0.00 32.50 2.82
6889 7942 3.198635 TGAGGCGATTTCTCTCCTTCAAT 59.801 43.478 0.00 0.00 36.72 2.57
6890 7943 2.567169 TGAGGCGATTTCTCTCCTTCAA 59.433 45.455 0.00 0.00 36.72 2.69
6891 7944 2.167281 CTGAGGCGATTTCTCTCCTTCA 59.833 50.000 0.00 0.00 36.72 3.02
6892 7945 2.820330 CTGAGGCGATTTCTCTCCTTC 58.180 52.381 0.00 0.00 36.72 3.46
6893 7946 1.134551 GCTGAGGCGATTTCTCTCCTT 60.135 52.381 0.00 0.00 36.72 3.36
6894 7947 0.463620 GCTGAGGCGATTTCTCTCCT 59.536 55.000 0.00 0.00 39.36 3.69
6895 7948 2.984871 GCTGAGGCGATTTCTCTCC 58.015 57.895 0.00 0.00 32.78 3.71
6913 7966 2.572095 TTACCTCTGCGGGCATGACG 62.572 60.000 0.00 0.56 36.97 4.35
6914 7967 0.179045 ATTACCTCTGCGGGCATGAC 60.179 55.000 0.00 0.00 36.97 3.06
6915 7968 0.546122 AATTACCTCTGCGGGCATGA 59.454 50.000 0.00 0.00 36.97 3.07
6916 7969 1.392589 AAATTACCTCTGCGGGCATG 58.607 50.000 0.00 0.00 36.97 4.06
6917 7970 2.143876 AAAATTACCTCTGCGGGCAT 57.856 45.000 0.00 0.00 36.97 4.40
6918 7971 2.290387 TGTAAAATTACCTCTGCGGGCA 60.290 45.455 0.00 0.00 36.97 5.36
6919 7972 2.361789 TGTAAAATTACCTCTGCGGGC 58.638 47.619 0.00 0.00 36.97 6.13
6920 7973 3.945285 ACATGTAAAATTACCTCTGCGGG 59.055 43.478 0.00 0.00 36.97 6.13
6921 7974 4.035208 GGACATGTAAAATTACCTCTGCGG 59.965 45.833 0.00 0.00 39.35 5.69
6922 7975 4.035208 GGGACATGTAAAATTACCTCTGCG 59.965 45.833 0.00 0.00 32.72 5.18
6923 7976 5.066505 CAGGGACATGTAAAATTACCTCTGC 59.933 44.000 0.00 0.00 32.72 4.26
6924 7977 5.066505 GCAGGGACATGTAAAATTACCTCTG 59.933 44.000 0.00 0.00 32.72 3.35
6925 7978 5.044846 AGCAGGGACATGTAAAATTACCTCT 60.045 40.000 0.00 0.00 32.72 3.69
6926 7979 5.066505 CAGCAGGGACATGTAAAATTACCTC 59.933 44.000 0.00 0.00 32.72 3.85
6927 7980 4.949856 CAGCAGGGACATGTAAAATTACCT 59.050 41.667 0.00 0.00 32.72 3.08
6928 7981 4.097892 CCAGCAGGGACATGTAAAATTACC 59.902 45.833 0.00 0.00 40.01 2.85
6929 7982 4.440112 GCCAGCAGGGACATGTAAAATTAC 60.440 45.833 0.00 0.00 40.01 1.89
6930 7983 3.699038 GCCAGCAGGGACATGTAAAATTA 59.301 43.478 0.00 0.00 40.01 1.40
6931 7984 2.497273 GCCAGCAGGGACATGTAAAATT 59.503 45.455 0.00 0.00 40.01 1.82
6932 7985 2.102578 GCCAGCAGGGACATGTAAAAT 58.897 47.619 0.00 0.00 40.01 1.82
6933 7986 1.544724 GCCAGCAGGGACATGTAAAA 58.455 50.000 0.00 0.00 40.01 1.52
6934 7987 3.264574 GCCAGCAGGGACATGTAAA 57.735 52.632 0.00 0.00 40.01 2.01
6944 7997 2.257409 ATACAGAACCGGCCAGCAGG 62.257 60.000 0.00 7.31 37.31 4.85
6945 7998 0.811616 GATACAGAACCGGCCAGCAG 60.812 60.000 0.00 0.00 0.00 4.24
6946 7999 1.220749 GATACAGAACCGGCCAGCA 59.779 57.895 0.00 0.00 0.00 4.41
6947 8000 4.126524 GATACAGAACCGGCCAGC 57.873 61.111 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.