Multiple sequence alignment - TraesCS5A01G043500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G043500 chr5A 100.000 4114 0 0 1 4114 39857266 39853153 0.000000e+00 7598.0
1 TraesCS5A01G043500 chr5B 91.364 2119 109 27 712 2785 53257854 53255765 0.000000e+00 2832.0
2 TraesCS5A01G043500 chr5B 90.096 727 40 17 3346 4066 53255190 53254490 0.000000e+00 915.0
3 TraesCS5A01G043500 chr5B 92.259 478 27 8 2870 3338 53255729 53255253 0.000000e+00 669.0
4 TraesCS5A01G043500 chr5B 96.296 54 2 0 4061 4114 53254449 53254396 5.660000e-14 89.8
5 TraesCS5A01G043500 chr5D 88.354 2035 137 36 1341 3336 50503993 50502020 0.000000e+00 2353.0
6 TraesCS5A01G043500 chr5D 96.443 506 11 5 802 1300 50504498 50503993 0.000000e+00 828.0
7 TraesCS5A01G043500 chr5D 91.908 346 16 5 3733 4070 50501651 50501310 1.340000e-129 473.0
8 TraesCS5A01G043500 chr5D 94.966 298 14 1 3346 3642 50501950 50501653 2.240000e-127 466.0
9 TraesCS5A01G043500 chr5D 88.931 262 27 1 1 262 50566133 50565874 5.130000e-84 322.0
10 TraesCS5A01G043500 chr5D 92.568 148 9 2 448 594 50505270 50505124 1.160000e-50 211.0
11 TraesCS5A01G043500 chr5D 97.248 109 2 1 674 782 50505112 50505005 2.530000e-42 183.0
12 TraesCS5A01G043500 chr3D 79.938 1286 132 56 2321 3545 610200376 610201596 0.000000e+00 830.0
13 TraesCS5A01G043500 chr3D 95.556 180 8 0 998 1177 610199707 610199886 5.200000e-74 289.0
14 TraesCS5A01G043500 chr3A 82.661 992 105 34 2352 3302 744379063 744380028 0.000000e+00 817.0
15 TraesCS5A01G043500 chr3A 95.833 168 7 0 998 1165 744377825 744377992 5.240000e-69 272.0
16 TraesCS5A01G043500 chr3A 82.456 114 11 6 3308 3419 744380058 744380164 1.570000e-14 91.6
17 TraesCS5A01G043500 chr3B 80.267 1125 126 48 2352 3419 822104402 822105487 0.000000e+00 760.0
18 TraesCS5A01G043500 chr3B 95.833 168 7 0 998 1165 822103558 822103725 5.240000e-69 272.0
19 TraesCS5A01G043500 chr3B 79.004 281 40 14 3615 3880 805616065 805615789 1.520000e-39 174.0
20 TraesCS5A01G043500 chr3B 89.109 101 8 3 2942 3039 821839490 821839590 5.580000e-24 122.0
21 TraesCS5A01G043500 chr6B 85.185 81 7 3 1273 1348 139344988 139345068 1.230000e-10 78.7
22 TraesCS5A01G043500 chr6B 85.185 81 7 3 1273 1348 245153950 245154030 1.230000e-10 78.7
23 TraesCS5A01G043500 chr4B 85.185 81 7 3 1273 1348 656779799 656779879 1.230000e-10 78.7
24 TraesCS5A01G043500 chr1B 85.185 81 7 3 1273 1348 128087876 128087956 1.230000e-10 78.7
25 TraesCS5A01G043500 chr1B 84.615 78 7 3 1276 1348 71569785 71569708 5.700000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G043500 chr5A 39853153 39857266 4113 True 7598.000000 7598 100.000000 1 4114 1 chr5A.!!$R1 4113
1 TraesCS5A01G043500 chr5B 53254396 53257854 3458 True 1126.450000 2832 92.503750 712 4114 4 chr5B.!!$R1 3402
2 TraesCS5A01G043500 chr5D 50501310 50505270 3960 True 752.333333 2353 93.581167 448 4070 6 chr5D.!!$R2 3622
3 TraesCS5A01G043500 chr3D 610199707 610201596 1889 False 559.500000 830 87.747000 998 3545 2 chr3D.!!$F1 2547
4 TraesCS5A01G043500 chr3A 744377825 744380164 2339 False 393.533333 817 86.983333 998 3419 3 chr3A.!!$F1 2421
5 TraesCS5A01G043500 chr3B 822103558 822105487 1929 False 516.000000 760 88.050000 998 3419 2 chr3B.!!$F2 2421

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 439 0.029834 CAACGGCTAGCCATTCATGC 59.970 55.0 32.47 3.87 35.37 4.06 F
728 730 0.038892 CCGAGTTCTCCGAAAACCGA 60.039 55.0 0.00 0.00 41.76 4.69 F
1421 2692 0.518636 GCAAGCGCTGATTTCAGTCA 59.481 50.0 12.58 0.00 45.45 3.41 F
2116 3409 0.036732 TGGAAGTGGACCACTGATGC 59.963 55.0 27.79 18.16 44.62 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 3254 0.326595 TTATTCAGAACGGCCTGCCA 59.673 50.0 9.17 0.0 34.28 4.92 R
1968 3255 1.680338 ATTATTCAGAACGGCCTGCC 58.320 50.0 0.00 0.0 34.28 4.85 R
2737 4155 0.794473 CCAAACCGCTCGTAAAGTCC 59.206 55.0 0.00 0.0 0.00 3.85 R
3827 5421 1.007336 GTGCCTTAGACCGACGTGTG 61.007 60.0 0.00 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.708403 AGGAGTGATTGCTCAATGACA 57.292 42.857 13.15 0.00 37.38 3.58
21 22 3.341823 AGGAGTGATTGCTCAATGACAC 58.658 45.455 13.15 9.60 37.38 3.67
22 23 2.421424 GGAGTGATTGCTCAATGACACC 59.579 50.000 13.15 12.18 38.10 4.16
23 24 3.341823 GAGTGATTGCTCAATGACACCT 58.658 45.455 13.15 0.00 37.38 4.00
24 25 3.341823 AGTGATTGCTCAATGACACCTC 58.658 45.455 13.15 0.00 37.38 3.85
25 26 2.421424 GTGATTGCTCAATGACACCTCC 59.579 50.000 7.21 0.00 35.45 4.30
26 27 2.306805 TGATTGCTCAATGACACCTCCT 59.693 45.455 0.00 0.00 0.00 3.69
27 28 2.479566 TTGCTCAATGACACCTCCTC 57.520 50.000 0.00 0.00 0.00 3.71
28 29 0.615331 TGCTCAATGACACCTCCTCC 59.385 55.000 0.00 0.00 0.00 4.30
29 30 0.460987 GCTCAATGACACCTCCTCCG 60.461 60.000 0.00 0.00 0.00 4.63
30 31 0.460987 CTCAATGACACCTCCTCCGC 60.461 60.000 0.00 0.00 0.00 5.54
31 32 1.450312 CAATGACACCTCCTCCGCC 60.450 63.158 0.00 0.00 0.00 6.13
32 33 3.019003 AATGACACCTCCTCCGCCG 62.019 63.158 0.00 0.00 0.00 6.46
35 36 4.753662 ACACCTCCTCCGCCGCTA 62.754 66.667 0.00 0.00 0.00 4.26
36 37 3.905678 CACCTCCTCCGCCGCTAG 61.906 72.222 0.00 0.00 0.00 3.42
39 40 3.838271 CTCCTCCGCCGCTAGCAA 61.838 66.667 16.45 0.00 44.04 3.91
40 41 3.781770 CTCCTCCGCCGCTAGCAAG 62.782 68.421 16.45 6.45 44.04 4.01
41 42 4.899239 CCTCCGCCGCTAGCAAGG 62.899 72.222 16.45 14.11 44.04 3.61
42 43 4.899239 CTCCGCCGCTAGCAAGGG 62.899 72.222 16.45 13.18 44.04 3.95
44 45 4.467084 CCGCCGCTAGCAAGGGAA 62.467 66.667 16.45 0.00 44.04 3.97
45 46 2.435938 CGCCGCTAGCAAGGGAAA 60.436 61.111 16.45 0.00 44.04 3.13
46 47 2.464459 CGCCGCTAGCAAGGGAAAG 61.464 63.158 16.45 0.00 44.04 2.62
47 48 2.115291 GCCGCTAGCAAGGGAAAGG 61.115 63.158 16.45 6.09 42.97 3.11
48 49 1.452108 CCGCTAGCAAGGGAAAGGG 60.452 63.158 16.45 0.00 37.88 3.95
49 50 2.115291 CGCTAGCAAGGGAAAGGGC 61.115 63.158 16.45 0.00 37.88 5.19
50 51 1.000896 GCTAGCAAGGGAAAGGGCA 60.001 57.895 10.63 0.00 0.00 5.36
51 52 1.034292 GCTAGCAAGGGAAAGGGCAG 61.034 60.000 10.63 0.00 0.00 4.85
52 53 0.394899 CTAGCAAGGGAAAGGGCAGG 60.395 60.000 0.00 0.00 0.00 4.85
53 54 1.863155 TAGCAAGGGAAAGGGCAGGG 61.863 60.000 0.00 0.00 0.00 4.45
54 55 2.681421 CAAGGGAAAGGGCAGGGC 60.681 66.667 0.00 0.00 0.00 5.19
55 56 2.866015 AAGGGAAAGGGCAGGGCT 60.866 61.111 0.00 0.00 0.00 5.19
56 57 3.229659 AAGGGAAAGGGCAGGGCTG 62.230 63.158 0.00 0.00 0.00 4.85
66 67 2.906458 CAGGGCTGCCTAGTCAGG 59.094 66.667 19.68 0.00 45.77 3.86
67 68 2.366167 AGGGCTGCCTAGTCAGGG 60.366 66.667 19.68 0.00 42.88 4.45
68 69 2.689034 GGGCTGCCTAGTCAGGGT 60.689 66.667 19.68 0.00 42.88 4.34
69 70 2.301738 GGGCTGCCTAGTCAGGGTT 61.302 63.158 19.68 0.00 42.88 4.11
70 71 1.078143 GGCTGCCTAGTCAGGGTTG 60.078 63.158 12.43 0.00 42.88 3.77
71 72 1.553690 GGCTGCCTAGTCAGGGTTGA 61.554 60.000 12.43 0.00 42.88 3.18
78 79 3.340789 GTCAGGGTTGACGTTGGC 58.659 61.111 0.00 0.00 43.84 4.52
79 80 2.280524 TCAGGGTTGACGTTGGCG 60.281 61.111 0.00 0.00 44.93 5.69
80 81 3.353836 CAGGGTTGACGTTGGCGG 61.354 66.667 0.00 0.00 43.45 6.13
81 82 3.552384 AGGGTTGACGTTGGCGGA 61.552 61.111 0.00 0.00 43.45 5.54
82 83 3.047877 GGGTTGACGTTGGCGGAG 61.048 66.667 0.00 0.00 43.45 4.63
83 84 3.047877 GGTTGACGTTGGCGGAGG 61.048 66.667 0.00 0.00 43.45 4.30
84 85 2.280592 GTTGACGTTGGCGGAGGT 60.281 61.111 0.00 0.00 43.45 3.85
85 86 1.005867 GTTGACGTTGGCGGAGGTA 60.006 57.895 0.00 0.00 43.45 3.08
86 87 1.012486 GTTGACGTTGGCGGAGGTAG 61.012 60.000 0.00 0.00 43.45 3.18
87 88 2.508663 GACGTTGGCGGAGGTAGC 60.509 66.667 0.00 0.00 43.45 3.58
94 95 4.203618 GCGGAGGTAGCCTTTCAC 57.796 61.111 0.00 0.00 31.76 3.18
95 96 1.295423 GCGGAGGTAGCCTTTCACA 59.705 57.895 0.00 0.00 31.76 3.58
96 97 1.019805 GCGGAGGTAGCCTTTCACAC 61.020 60.000 0.00 0.00 31.76 3.82
97 98 0.736325 CGGAGGTAGCCTTTCACACG 60.736 60.000 0.00 0.00 31.76 4.49
98 99 0.606604 GGAGGTAGCCTTTCACACGA 59.393 55.000 0.00 0.00 31.76 4.35
99 100 1.207329 GGAGGTAGCCTTTCACACGAT 59.793 52.381 0.00 0.00 31.76 3.73
100 101 2.271800 GAGGTAGCCTTTCACACGATG 58.728 52.381 0.00 0.00 31.76 3.84
101 102 0.727398 GGTAGCCTTTCACACGATGC 59.273 55.000 0.00 0.00 0.00 3.91
102 103 1.438651 GTAGCCTTTCACACGATGCA 58.561 50.000 0.00 0.00 0.00 3.96
103 104 2.009774 GTAGCCTTTCACACGATGCAT 58.990 47.619 0.00 0.00 0.00 3.96
104 105 0.806868 AGCCTTTCACACGATGCATG 59.193 50.000 2.46 0.00 0.00 4.06
105 106 0.804364 GCCTTTCACACGATGCATGA 59.196 50.000 2.46 0.00 0.00 3.07
106 107 1.202110 GCCTTTCACACGATGCATGAG 60.202 52.381 2.46 0.00 0.00 2.90
107 108 1.399440 CCTTTCACACGATGCATGAGG 59.601 52.381 2.46 0.00 0.00 3.86
108 109 2.349590 CTTTCACACGATGCATGAGGA 58.650 47.619 2.46 0.00 0.00 3.71
109 110 2.470983 TTCACACGATGCATGAGGAA 57.529 45.000 2.46 0.00 0.00 3.36
110 111 2.014335 TCACACGATGCATGAGGAAG 57.986 50.000 2.46 0.00 0.00 3.46
111 112 1.276138 TCACACGATGCATGAGGAAGT 59.724 47.619 2.46 0.00 0.00 3.01
112 113 1.395954 CACACGATGCATGAGGAAGTG 59.604 52.381 2.46 7.15 35.23 3.16
113 114 1.276138 ACACGATGCATGAGGAAGTGA 59.724 47.619 2.46 0.00 34.00 3.41
114 115 1.931841 CACGATGCATGAGGAAGTGAG 59.068 52.381 2.46 0.00 32.45 3.51
115 116 1.552337 ACGATGCATGAGGAAGTGAGT 59.448 47.619 2.46 0.00 0.00 3.41
116 117 2.760650 ACGATGCATGAGGAAGTGAGTA 59.239 45.455 2.46 0.00 0.00 2.59
117 118 3.181482 ACGATGCATGAGGAAGTGAGTAG 60.181 47.826 2.46 0.00 0.00 2.57
118 119 2.680312 TGCATGAGGAAGTGAGTAGC 57.320 50.000 0.00 0.00 0.00 3.58
119 120 2.182827 TGCATGAGGAAGTGAGTAGCT 58.817 47.619 0.00 0.00 0.00 3.32
120 121 2.167281 TGCATGAGGAAGTGAGTAGCTC 59.833 50.000 0.00 0.00 0.00 4.09
121 122 2.482839 GCATGAGGAAGTGAGTAGCTCC 60.483 54.545 0.00 0.00 0.00 4.70
122 123 2.909504 TGAGGAAGTGAGTAGCTCCT 57.090 50.000 0.00 0.00 0.00 3.69
123 124 3.176924 TGAGGAAGTGAGTAGCTCCTT 57.823 47.619 0.00 0.00 0.00 3.36
124 125 3.511477 TGAGGAAGTGAGTAGCTCCTTT 58.489 45.455 0.00 0.00 0.00 3.11
125 126 3.259374 TGAGGAAGTGAGTAGCTCCTTTG 59.741 47.826 0.00 0.00 0.00 2.77
126 127 3.243724 AGGAAGTGAGTAGCTCCTTTGT 58.756 45.455 0.00 0.00 0.00 2.83
127 128 3.007398 AGGAAGTGAGTAGCTCCTTTGTG 59.993 47.826 0.00 0.00 0.00 3.33
128 129 3.006967 GGAAGTGAGTAGCTCCTTTGTGA 59.993 47.826 0.00 0.00 0.00 3.58
129 130 3.951775 AGTGAGTAGCTCCTTTGTGAG 57.048 47.619 0.00 0.00 35.40 3.51
130 131 3.235200 AGTGAGTAGCTCCTTTGTGAGT 58.765 45.455 0.00 0.00 34.74 3.41
131 132 3.006323 AGTGAGTAGCTCCTTTGTGAGTG 59.994 47.826 0.00 0.00 34.74 3.51
132 133 2.965831 TGAGTAGCTCCTTTGTGAGTGT 59.034 45.455 0.00 0.00 34.74 3.55
133 134 3.005897 TGAGTAGCTCCTTTGTGAGTGTC 59.994 47.826 0.00 0.00 34.74 3.67
134 135 2.965831 AGTAGCTCCTTTGTGAGTGTCA 59.034 45.455 0.00 0.00 34.74 3.58
135 136 2.540265 AGCTCCTTTGTGAGTGTCAG 57.460 50.000 0.00 0.00 34.74 3.51
136 137 1.071385 AGCTCCTTTGTGAGTGTCAGG 59.929 52.381 0.00 0.00 34.74 3.86
137 138 1.517242 CTCCTTTGTGAGTGTCAGGC 58.483 55.000 0.00 0.00 0.00 4.85
138 139 0.249868 TCCTTTGTGAGTGTCAGGCG 60.250 55.000 0.00 0.00 0.00 5.52
139 140 1.230635 CCTTTGTGAGTGTCAGGCGG 61.231 60.000 0.00 0.00 0.00 6.13
140 141 1.845809 CTTTGTGAGTGTCAGGCGGC 61.846 60.000 0.00 0.00 0.00 6.53
141 142 3.825160 TTGTGAGTGTCAGGCGGCC 62.825 63.158 12.11 12.11 0.00 6.13
200 201 6.150396 CGAAGCTATATATAACTCTGGGGG 57.850 45.833 0.00 0.00 0.00 5.40
201 202 5.657302 CGAAGCTATATATAACTCTGGGGGT 59.343 44.000 0.00 0.00 0.00 4.95
202 203 6.154706 CGAAGCTATATATAACTCTGGGGGTT 59.845 42.308 0.00 0.00 0.00 4.11
203 204 6.875972 AGCTATATATAACTCTGGGGGTTG 57.124 41.667 0.00 0.00 0.00 3.77
204 205 6.331846 AGCTATATATAACTCTGGGGGTTGT 58.668 40.000 0.00 0.00 0.00 3.32
205 206 6.213600 AGCTATATATAACTCTGGGGGTTGTG 59.786 42.308 0.00 0.00 0.00 3.33
206 207 5.843019 ATATATAACTCTGGGGGTTGTGG 57.157 43.478 0.00 0.00 0.00 4.17
207 208 0.331616 ATAACTCTGGGGGTTGTGGC 59.668 55.000 0.00 0.00 0.00 5.01
208 209 1.785353 TAACTCTGGGGGTTGTGGCC 61.785 60.000 0.00 0.00 0.00 5.36
209 210 3.260100 CTCTGGGGGTTGTGGCCT 61.260 66.667 3.32 0.00 0.00 5.19
210 211 3.256960 TCTGGGGGTTGTGGCCTC 61.257 66.667 3.32 0.00 0.00 4.70
214 215 2.600470 GGGGTTGTGGCCTCCAAC 60.600 66.667 22.98 22.98 41.11 3.77
217 218 4.599036 GTTGTGGCCTCCAACCTT 57.401 55.556 21.41 0.00 36.94 3.50
218 219 2.041153 GTTGTGGCCTCCAACCTTG 58.959 57.895 21.41 0.00 36.94 3.61
219 220 0.755327 GTTGTGGCCTCCAACCTTGT 60.755 55.000 21.41 0.00 36.94 3.16
220 221 0.847373 TTGTGGCCTCCAACCTTGTA 59.153 50.000 3.32 0.00 34.18 2.41
221 222 0.109723 TGTGGCCTCCAACCTTGTAC 59.890 55.000 3.32 0.00 34.18 2.90
222 223 0.608308 GTGGCCTCCAACCTTGTACC 60.608 60.000 3.32 0.00 34.18 3.34
223 224 1.063070 TGGCCTCCAACCTTGTACCA 61.063 55.000 3.32 0.00 0.00 3.25
224 225 0.111639 GGCCTCCAACCTTGTACCAA 59.888 55.000 0.00 0.00 0.00 3.67
225 226 1.479757 GGCCTCCAACCTTGTACCAAA 60.480 52.381 0.00 0.00 0.00 3.28
226 227 2.525368 GCCTCCAACCTTGTACCAAAT 58.475 47.619 0.00 0.00 0.00 2.32
227 228 2.897326 GCCTCCAACCTTGTACCAAATT 59.103 45.455 0.00 0.00 0.00 1.82
228 229 3.306019 GCCTCCAACCTTGTACCAAATTG 60.306 47.826 0.00 0.00 0.00 2.32
229 230 3.895041 CCTCCAACCTTGTACCAAATTGT 59.105 43.478 0.00 0.00 0.00 2.71
230 231 4.261994 CCTCCAACCTTGTACCAAATTGTG 60.262 45.833 0.00 0.00 0.00 3.33
231 232 4.537751 TCCAACCTTGTACCAAATTGTGA 58.462 39.130 0.00 0.00 0.00 3.58
232 233 4.956700 TCCAACCTTGTACCAAATTGTGAA 59.043 37.500 0.00 0.00 0.00 3.18
233 234 5.068460 TCCAACCTTGTACCAAATTGTGAAG 59.932 40.000 0.00 0.00 0.00 3.02
234 235 5.068460 CCAACCTTGTACCAAATTGTGAAGA 59.932 40.000 0.00 0.00 0.00 2.87
235 236 6.406400 CCAACCTTGTACCAAATTGTGAAGAA 60.406 38.462 0.00 0.00 0.00 2.52
236 237 6.391227 ACCTTGTACCAAATTGTGAAGAAG 57.609 37.500 0.00 0.00 0.00 2.85
237 238 6.126409 ACCTTGTACCAAATTGTGAAGAAGA 58.874 36.000 0.00 0.00 0.00 2.87
238 239 6.605594 ACCTTGTACCAAATTGTGAAGAAGAA 59.394 34.615 0.00 0.00 0.00 2.52
239 240 7.123547 ACCTTGTACCAAATTGTGAAGAAGAAA 59.876 33.333 0.00 0.00 0.00 2.52
240 241 7.978975 CCTTGTACCAAATTGTGAAGAAGAAAA 59.021 33.333 0.00 0.00 0.00 2.29
241 242 9.364989 CTTGTACCAAATTGTGAAGAAGAAAAA 57.635 29.630 0.00 0.00 0.00 1.94
260 261 5.530176 AAAAATTAGGGGGAGTGCTTAGA 57.470 39.130 0.00 0.00 0.00 2.10
261 262 5.734031 AAAATTAGGGGGAGTGCTTAGAT 57.266 39.130 0.00 0.00 0.00 1.98
262 263 4.984146 AATTAGGGGGAGTGCTTAGATC 57.016 45.455 0.00 0.00 0.00 2.75
263 264 3.414759 TTAGGGGGAGTGCTTAGATCA 57.585 47.619 0.00 0.00 0.00 2.92
264 265 1.799933 AGGGGGAGTGCTTAGATCAG 58.200 55.000 0.00 0.00 0.00 2.90
265 266 1.292242 AGGGGGAGTGCTTAGATCAGA 59.708 52.381 0.00 0.00 0.00 3.27
266 267 2.090267 AGGGGGAGTGCTTAGATCAGAT 60.090 50.000 0.00 0.00 0.00 2.90
267 268 2.038295 GGGGGAGTGCTTAGATCAGATG 59.962 54.545 0.00 0.00 0.00 2.90
268 269 2.968574 GGGGAGTGCTTAGATCAGATGA 59.031 50.000 0.00 0.00 0.00 2.92
269 270 3.006752 GGGGAGTGCTTAGATCAGATGAG 59.993 52.174 0.00 0.00 0.00 2.90
270 271 3.894427 GGGAGTGCTTAGATCAGATGAGA 59.106 47.826 0.00 0.00 0.00 3.27
271 272 4.527816 GGGAGTGCTTAGATCAGATGAGAT 59.472 45.833 0.00 0.00 0.00 2.75
272 273 5.336690 GGGAGTGCTTAGATCAGATGAGATC 60.337 48.000 0.00 0.00 43.73 2.75
284 285 8.470040 GATCAGATGAGATCTTCTTTAGCATC 57.530 38.462 0.00 3.47 40.93 3.91
285 286 6.757237 TCAGATGAGATCTTCTTTAGCATCC 58.243 40.000 12.34 0.02 37.58 3.51
286 287 5.933463 CAGATGAGATCTTCTTTAGCATCCC 59.067 44.000 12.34 0.00 37.58 3.85
287 288 5.605908 AGATGAGATCTTCTTTAGCATCCCA 59.394 40.000 12.34 0.00 35.76 4.37
288 289 5.287674 TGAGATCTTCTTTAGCATCCCAG 57.712 43.478 0.00 0.00 0.00 4.45
289 290 4.102210 TGAGATCTTCTTTAGCATCCCAGG 59.898 45.833 0.00 0.00 0.00 4.45
290 291 2.717639 TCTTCTTTAGCATCCCAGGC 57.282 50.000 0.00 0.00 0.00 4.85
291 292 1.212935 TCTTCTTTAGCATCCCAGGCC 59.787 52.381 0.00 0.00 0.00 5.19
292 293 1.213926 CTTCTTTAGCATCCCAGGCCT 59.786 52.381 0.00 0.00 0.00 5.19
293 294 1.298953 TCTTTAGCATCCCAGGCCTT 58.701 50.000 0.00 0.00 0.00 4.35
294 295 2.487775 TCTTTAGCATCCCAGGCCTTA 58.512 47.619 0.00 0.00 0.00 2.69
295 296 2.439507 TCTTTAGCATCCCAGGCCTTAG 59.560 50.000 0.00 0.00 0.00 2.18
296 297 0.474184 TTAGCATCCCAGGCCTTAGC 59.526 55.000 0.00 2.61 38.76 3.09
334 335 3.946201 CGCCCCCATCCCTAGCAG 61.946 72.222 0.00 0.00 0.00 4.24
335 336 4.277009 GCCCCCATCCCTAGCAGC 62.277 72.222 0.00 0.00 0.00 5.25
336 337 2.773918 CCCCCATCCCTAGCAGCA 60.774 66.667 0.00 0.00 0.00 4.41
337 338 2.827129 CCCCCATCCCTAGCAGCAG 61.827 68.421 0.00 0.00 0.00 4.24
338 339 2.074948 CCCCATCCCTAGCAGCAGT 61.075 63.158 0.00 0.00 0.00 4.40
339 340 1.639635 CCCCATCCCTAGCAGCAGTT 61.640 60.000 0.00 0.00 0.00 3.16
340 341 0.257039 CCCATCCCTAGCAGCAGTTT 59.743 55.000 0.00 0.00 0.00 2.66
341 342 1.673168 CCATCCCTAGCAGCAGTTTC 58.327 55.000 0.00 0.00 0.00 2.78
342 343 1.211457 CCATCCCTAGCAGCAGTTTCT 59.789 52.381 0.00 0.00 0.00 2.52
343 344 2.435805 CCATCCCTAGCAGCAGTTTCTA 59.564 50.000 0.00 0.00 0.00 2.10
344 345 3.462021 CATCCCTAGCAGCAGTTTCTAC 58.538 50.000 0.00 0.00 0.00 2.59
345 346 1.476891 TCCCTAGCAGCAGTTTCTACG 59.523 52.381 0.00 0.00 0.00 3.51
346 347 1.204941 CCCTAGCAGCAGTTTCTACGT 59.795 52.381 0.00 0.00 0.00 3.57
347 348 2.426024 CCCTAGCAGCAGTTTCTACGTA 59.574 50.000 0.00 0.00 0.00 3.57
348 349 3.489398 CCCTAGCAGCAGTTTCTACGTAG 60.489 52.174 16.73 16.73 0.00 3.51
349 350 1.997669 AGCAGCAGTTTCTACGTAGC 58.002 50.000 18.00 5.92 0.00 3.58
350 351 1.546476 AGCAGCAGTTTCTACGTAGCT 59.454 47.619 18.00 8.30 33.93 3.32
351 352 1.921230 GCAGCAGTTTCTACGTAGCTC 59.079 52.381 18.00 9.98 32.23 4.09
352 353 2.416162 GCAGCAGTTTCTACGTAGCTCT 60.416 50.000 18.00 11.94 32.23 4.09
353 354 3.175152 CAGCAGTTTCTACGTAGCTCTG 58.825 50.000 23.78 23.78 32.23 3.35
354 355 2.820787 AGCAGTTTCTACGTAGCTCTGT 59.179 45.455 26.07 17.39 29.86 3.41
355 356 3.119779 AGCAGTTTCTACGTAGCTCTGTC 60.120 47.826 26.07 21.27 29.86 3.51
356 357 3.418094 CAGTTTCTACGTAGCTCTGTCG 58.582 50.000 18.00 0.00 0.00 4.35
357 358 2.159544 AGTTTCTACGTAGCTCTGTCGC 60.160 50.000 18.00 2.41 0.00 5.19
358 359 1.735386 TTCTACGTAGCTCTGTCGCT 58.265 50.000 18.00 0.00 43.83 4.93
359 360 1.007580 TCTACGTAGCTCTGTCGCTG 58.992 55.000 18.00 0.00 41.12 5.18
360 361 0.590230 CTACGTAGCTCTGTCGCTGC 60.590 60.000 10.14 0.00 41.12 5.25
361 362 1.025113 TACGTAGCTCTGTCGCTGCT 61.025 55.000 0.00 0.00 41.12 4.24
362 363 1.585002 CGTAGCTCTGTCGCTGCTC 60.585 63.158 0.00 0.00 41.12 4.26
363 364 1.585002 GTAGCTCTGTCGCTGCTCG 60.585 63.158 0.00 0.00 41.12 5.03
364 365 2.041115 TAGCTCTGTCGCTGCTCGT 61.041 57.895 0.00 0.00 41.12 4.18
365 366 2.258580 TAGCTCTGTCGCTGCTCGTG 62.259 60.000 0.00 0.00 41.12 4.35
366 367 3.177920 CTCTGTCGCTGCTCGTGC 61.178 66.667 1.71 1.71 39.67 5.34
367 368 4.724602 TCTGTCGCTGCTCGTGCC 62.725 66.667 7.05 0.00 39.67 5.01
371 372 4.742201 TCGCTGCTCGTGCCCTTC 62.742 66.667 7.05 0.00 39.67 3.46
374 375 4.379243 CTGCTCGTGCCCTTCCGT 62.379 66.667 7.05 0.00 38.71 4.69
375 376 3.883744 CTGCTCGTGCCCTTCCGTT 62.884 63.158 7.05 0.00 38.71 4.44
376 377 3.423154 GCTCGTGCCCTTCCGTTG 61.423 66.667 0.00 0.00 0.00 4.10
377 378 3.423154 CTCGTGCCCTTCCGTTGC 61.423 66.667 0.00 0.00 0.00 4.17
378 379 3.883744 CTCGTGCCCTTCCGTTGCT 62.884 63.158 0.00 0.00 0.00 3.91
379 380 3.726517 CGTGCCCTTCCGTTGCTG 61.727 66.667 0.00 0.00 0.00 4.41
380 381 3.365265 GTGCCCTTCCGTTGCTGG 61.365 66.667 0.00 0.00 0.00 4.85
381 382 3.565214 TGCCCTTCCGTTGCTGGA 61.565 61.111 0.00 0.00 35.83 3.86
382 383 2.282180 GCCCTTCCGTTGCTGGAA 60.282 61.111 5.69 5.69 45.62 3.53
386 387 4.792087 TTCCGTTGCTGGAAGGAC 57.208 55.556 3.08 0.00 43.01 3.85
387 388 1.072505 TTCCGTTGCTGGAAGGACC 59.927 57.895 3.08 0.00 43.01 4.46
388 389 1.701031 TTCCGTTGCTGGAAGGACCA 61.701 55.000 3.08 0.00 43.01 4.02
389 390 1.966451 CCGTTGCTGGAAGGACCAC 60.966 63.158 3.08 0.00 44.64 4.16
390 391 1.071471 CGTTGCTGGAAGGACCACT 59.929 57.895 0.00 0.00 44.64 4.00
391 392 0.535102 CGTTGCTGGAAGGACCACTT 60.535 55.000 0.00 0.00 44.64 3.16
401 402 3.703001 AAGGACCACTTCAACGATGAT 57.297 42.857 0.00 0.00 32.85 2.45
402 403 2.977914 AGGACCACTTCAACGATGATG 58.022 47.619 6.97 6.97 34.96 3.07
403 404 2.567169 AGGACCACTTCAACGATGATGA 59.433 45.455 14.27 0.00 34.96 2.92
404 405 2.673368 GGACCACTTCAACGATGATGAC 59.327 50.000 14.27 1.70 34.96 3.06
405 406 3.589988 GACCACTTCAACGATGATGACT 58.410 45.455 14.27 0.00 34.96 3.41
406 407 4.381612 GGACCACTTCAACGATGATGACTA 60.382 45.833 14.27 0.00 34.96 2.59
407 408 4.495422 ACCACTTCAACGATGATGACTAC 58.505 43.478 14.27 0.00 34.96 2.73
408 409 4.220821 ACCACTTCAACGATGATGACTACT 59.779 41.667 14.27 0.00 34.96 2.57
409 410 5.417894 ACCACTTCAACGATGATGACTACTA 59.582 40.000 14.27 0.00 34.96 1.82
410 411 5.744345 CCACTTCAACGATGATGACTACTAC 59.256 44.000 14.27 0.00 34.96 2.73
411 412 5.452623 CACTTCAACGATGATGACTACTACG 59.547 44.000 14.27 0.00 34.96 3.51
412 413 5.353400 ACTTCAACGATGATGACTACTACGA 59.647 40.000 14.27 0.00 34.96 3.43
413 414 5.806366 TCAACGATGATGACTACTACGAA 57.194 39.130 0.00 0.00 0.00 3.85
414 415 5.807344 TCAACGATGATGACTACTACGAAG 58.193 41.667 0.00 0.00 0.00 3.79
415 416 4.815040 ACGATGATGACTACTACGAAGG 57.185 45.455 0.00 0.00 0.00 3.46
416 417 4.197750 ACGATGATGACTACTACGAAGGT 58.802 43.478 0.00 0.00 0.00 3.50
417 418 4.035324 ACGATGATGACTACTACGAAGGTG 59.965 45.833 0.00 0.00 0.00 4.00
418 419 3.777465 TGATGACTACTACGAAGGTGC 57.223 47.619 0.00 0.00 0.00 5.01
419 420 2.426024 TGATGACTACTACGAAGGTGCC 59.574 50.000 0.00 0.00 0.00 5.01
420 421 1.913778 TGACTACTACGAAGGTGCCA 58.086 50.000 0.00 0.00 0.00 4.92
421 422 2.241160 TGACTACTACGAAGGTGCCAA 58.759 47.619 0.00 0.00 0.00 4.52
422 423 2.029649 TGACTACTACGAAGGTGCCAAC 60.030 50.000 0.00 0.00 0.00 3.77
423 424 1.068055 ACTACTACGAAGGTGCCAACG 60.068 52.381 0.00 0.00 0.00 4.10
424 425 0.244450 TACTACGAAGGTGCCAACGG 59.756 55.000 0.00 0.00 0.00 4.44
434 435 3.111038 GCCAACGGCTAGCCATTC 58.889 61.111 32.47 10.05 46.69 2.67
435 436 1.748879 GCCAACGGCTAGCCATTCA 60.749 57.895 32.47 0.00 46.69 2.57
436 437 1.103398 GCCAACGGCTAGCCATTCAT 61.103 55.000 32.47 10.96 46.69 2.57
437 438 0.664761 CCAACGGCTAGCCATTCATG 59.335 55.000 32.47 20.86 35.37 3.07
438 439 0.029834 CAACGGCTAGCCATTCATGC 59.970 55.000 32.47 3.87 35.37 4.06
439 440 0.394216 AACGGCTAGCCATTCATGCA 60.394 50.000 32.47 0.00 35.37 3.96
440 441 0.179009 ACGGCTAGCCATTCATGCAT 60.179 50.000 32.47 0.00 35.37 3.96
441 442 1.072173 ACGGCTAGCCATTCATGCATA 59.928 47.619 32.47 0.00 35.37 3.14
442 443 1.466167 CGGCTAGCCATTCATGCATAC 59.534 52.381 32.47 1.58 35.37 2.39
443 444 2.507484 GGCTAGCCATTCATGCATACA 58.493 47.619 29.33 0.00 35.81 2.29
444 445 2.886523 GGCTAGCCATTCATGCATACAA 59.113 45.455 29.33 0.00 35.81 2.41
445 446 3.057736 GGCTAGCCATTCATGCATACAAG 60.058 47.826 29.33 0.00 35.81 3.16
446 447 3.057736 GCTAGCCATTCATGCATACAAGG 60.058 47.826 2.29 0.61 0.00 3.61
447 448 3.022557 AGCCATTCATGCATACAAGGT 57.977 42.857 0.00 0.00 0.00 3.50
448 449 2.954318 AGCCATTCATGCATACAAGGTC 59.046 45.455 0.00 0.00 0.00 3.85
449 450 2.689471 GCCATTCATGCATACAAGGTCA 59.311 45.455 0.00 0.00 0.00 4.02
450 451 3.319972 GCCATTCATGCATACAAGGTCAT 59.680 43.478 0.00 0.00 0.00 3.06
451 452 4.202182 GCCATTCATGCATACAAGGTCATT 60.202 41.667 0.00 0.00 0.00 2.57
452 453 5.286438 CCATTCATGCATACAAGGTCATTG 58.714 41.667 0.00 0.00 45.01 2.82
471 472 8.680001 GGTCATTGTCCGGTAAAATTAGTTTAT 58.320 33.333 0.00 0.00 34.23 1.40
508 510 6.627690 AGTTGAACGTACTAAACATGATCG 57.372 37.500 0.00 0.00 0.00 3.69
509 511 5.575606 AGTTGAACGTACTAAACATGATCGG 59.424 40.000 0.00 0.00 0.00 4.18
528 530 8.078959 TGATCGGGTTTATGTAAAACATATCG 57.921 34.615 3.26 4.31 40.41 2.92
531 533 8.489990 TCGGGTTTATGTAAAACATATCGAAA 57.510 30.769 3.26 0.00 40.41 3.46
609 611 8.568732 TTTTATTACGAAAAGAGGTTTGCAAG 57.431 30.769 0.00 0.00 0.00 4.01
610 612 2.492019 ACGAAAAGAGGTTTGCAAGC 57.508 45.000 4.46 4.46 0.00 4.01
611 613 1.268539 ACGAAAAGAGGTTTGCAAGCG 60.269 47.619 7.23 0.00 0.00 4.68
612 614 1.268539 CGAAAAGAGGTTTGCAAGCGT 60.269 47.619 8.28 8.28 0.00 5.07
613 615 2.385315 GAAAAGAGGTTTGCAAGCGTC 58.615 47.619 23.33 23.33 0.00 5.19
614 616 1.388547 AAAGAGGTTTGCAAGCGTCA 58.611 45.000 29.39 1.24 0.00 4.35
615 617 1.609208 AAGAGGTTTGCAAGCGTCAT 58.391 45.000 29.39 19.64 0.00 3.06
616 618 2.472695 AGAGGTTTGCAAGCGTCATA 57.527 45.000 29.39 0.00 0.00 2.15
617 619 2.991250 AGAGGTTTGCAAGCGTCATAT 58.009 42.857 29.39 12.81 0.00 1.78
618 620 2.679837 AGAGGTTTGCAAGCGTCATATG 59.320 45.455 29.39 0.00 0.00 1.78
619 621 2.677836 GAGGTTTGCAAGCGTCATATGA 59.322 45.455 25.08 0.00 0.00 2.15
620 622 3.282021 AGGTTTGCAAGCGTCATATGAT 58.718 40.909 9.02 0.00 0.00 2.45
621 623 3.696051 AGGTTTGCAAGCGTCATATGATT 59.304 39.130 9.02 0.00 0.00 2.57
622 624 3.792956 GGTTTGCAAGCGTCATATGATTG 59.207 43.478 9.02 10.56 0.00 2.67
623 625 3.696281 TTGCAAGCGTCATATGATTGG 57.304 42.857 9.02 3.04 0.00 3.16
624 626 1.334556 TGCAAGCGTCATATGATTGGC 59.665 47.619 9.02 12.63 0.00 4.52
625 627 1.334556 GCAAGCGTCATATGATTGGCA 59.665 47.619 21.07 0.00 0.00 4.92
626 628 2.030540 GCAAGCGTCATATGATTGGCAT 60.031 45.455 21.07 11.57 41.08 4.40
627 629 3.818387 CAAGCGTCATATGATTGGCATC 58.182 45.455 21.07 3.89 38.44 3.91
628 630 2.071540 AGCGTCATATGATTGGCATCG 58.928 47.619 21.07 14.17 38.44 3.84
629 631 1.129251 GCGTCATATGATTGGCATCGG 59.871 52.381 9.02 0.00 38.44 4.18
630 632 2.416747 CGTCATATGATTGGCATCGGT 58.583 47.619 9.02 0.00 38.44 4.69
631 633 3.584834 CGTCATATGATTGGCATCGGTA 58.415 45.455 9.02 0.00 38.44 4.02
632 634 4.183865 CGTCATATGATTGGCATCGGTAT 58.816 43.478 9.02 0.00 38.44 2.73
633 635 4.268644 CGTCATATGATTGGCATCGGTATC 59.731 45.833 9.02 0.00 38.44 2.24
634 636 4.268644 GTCATATGATTGGCATCGGTATCG 59.731 45.833 9.02 0.00 38.44 2.92
635 637 2.099141 ATGATTGGCATCGGTATCGG 57.901 50.000 0.00 0.00 36.95 4.18
636 638 0.756294 TGATTGGCATCGGTATCGGT 59.244 50.000 0.00 0.00 36.95 4.69
637 639 1.964933 TGATTGGCATCGGTATCGGTA 59.035 47.619 0.00 0.00 36.95 4.02
638 640 2.565391 TGATTGGCATCGGTATCGGTAT 59.435 45.455 0.00 0.00 36.95 2.73
639 641 2.736144 TTGGCATCGGTATCGGTATC 57.264 50.000 0.00 0.00 36.95 2.24
640 642 1.623163 TGGCATCGGTATCGGTATCA 58.377 50.000 0.00 0.00 36.95 2.15
641 643 2.176045 TGGCATCGGTATCGGTATCAT 58.824 47.619 0.00 0.00 36.95 2.45
642 644 2.094234 TGGCATCGGTATCGGTATCATG 60.094 50.000 0.00 0.00 36.95 3.07
643 645 2.165641 GGCATCGGTATCGGTATCATGA 59.834 50.000 0.00 0.00 36.95 3.07
644 646 3.181475 GGCATCGGTATCGGTATCATGAT 60.181 47.826 13.81 13.81 36.95 2.45
645 647 4.045104 GCATCGGTATCGGTATCATGATC 58.955 47.826 12.53 4.10 36.95 2.92
646 648 4.440112 GCATCGGTATCGGTATCATGATCA 60.440 45.833 12.53 0.00 36.95 2.92
647 649 4.965119 TCGGTATCGGTATCATGATCAG 57.035 45.455 12.53 5.10 36.95 2.90
648 650 3.128764 TCGGTATCGGTATCATGATCAGC 59.871 47.826 12.53 7.73 36.95 4.26
649 651 3.439293 GGTATCGGTATCATGATCAGCG 58.561 50.000 12.53 18.07 34.67 5.18
650 652 2.662006 ATCGGTATCATGATCAGCGG 57.338 50.000 23.68 15.68 34.18 5.52
651 653 1.616159 TCGGTATCATGATCAGCGGA 58.384 50.000 23.68 17.05 34.18 5.54
652 654 2.171003 TCGGTATCATGATCAGCGGAT 58.829 47.619 23.68 0.00 36.13 4.18
653 655 2.094545 TCGGTATCATGATCAGCGGATG 60.095 50.000 23.68 2.89 32.67 3.51
654 656 2.353109 CGGTATCATGATCAGCGGATGT 60.353 50.000 12.53 0.00 32.67 3.06
655 657 2.998670 GGTATCATGATCAGCGGATGTG 59.001 50.000 12.53 3.39 32.67 3.21
656 658 2.924757 ATCATGATCAGCGGATGTGT 57.075 45.000 3.36 0.00 32.67 3.72
657 659 2.229675 TCATGATCAGCGGATGTGTC 57.770 50.000 3.36 0.00 32.67 3.67
658 660 1.202568 TCATGATCAGCGGATGTGTCC 60.203 52.381 3.36 0.00 41.40 4.02
690 692 4.181578 CAGTAGTATGTCCGTTTTGGGAG 58.818 47.826 0.00 0.00 36.58 4.30
710 712 4.994852 GGAGGCTAACAAATTGGAAAAACC 59.005 41.667 0.00 0.00 39.54 3.27
728 730 0.038892 CCGAGTTCTCCGAAAACCGA 60.039 55.000 0.00 0.00 41.76 4.69
863 1360 3.749064 GCAGAGCACCTCGTCCGA 61.749 66.667 0.00 0.00 35.36 4.55
918 1415 1.582937 CTCGTCCGTGAATCGACCG 60.583 63.158 0.00 0.00 42.86 4.79
921 1418 3.375239 TCCGTGAATCGACCGCCA 61.375 61.111 0.00 0.00 42.86 5.69
992 1496 4.545706 CGCCGCCCCTAATCAGCA 62.546 66.667 0.00 0.00 0.00 4.41
1190 1828 4.468868 TCAGTAACCCCTAACCTTTCTAGC 59.531 45.833 0.00 0.00 0.00 3.42
1314 2564 4.213564 TCTCTCTGAGAAATTTGGAGGC 57.786 45.455 8.95 0.00 35.59 4.70
1319 2569 3.527253 TCTGAGAAATTTGGAGGCCCATA 59.473 43.478 0.00 0.00 43.12 2.74
1351 2601 9.784531 AATGTAGCAGATTTATTACTAGCACAT 57.215 29.630 0.00 0.00 0.00 3.21
1404 2675 3.629855 TCCATTTCTGACGAAAAACAGCA 59.370 39.130 0.00 0.00 42.03 4.41
1408 2679 1.003972 TCTGACGAAAAACAGCAAGCG 60.004 47.619 0.00 0.00 34.57 4.68
1420 2691 3.302968 GCAAGCGCTGATTTCAGTC 57.697 52.632 12.58 2.45 45.45 3.51
1421 2692 0.518636 GCAAGCGCTGATTTCAGTCA 59.481 50.000 12.58 0.00 45.45 3.41
1422 2693 1.131883 GCAAGCGCTGATTTCAGTCAT 59.868 47.619 12.58 0.00 45.45 3.06
1423 2694 2.415090 GCAAGCGCTGATTTCAGTCATT 60.415 45.455 12.58 0.00 45.45 2.57
1424 2695 3.181507 GCAAGCGCTGATTTCAGTCATTA 60.182 43.478 12.58 0.00 45.45 1.90
1430 2701 5.801947 GCGCTGATTTCAGTCATTACATTTT 59.198 36.000 0.00 0.00 45.45 1.82
1520 2791 1.202580 AGGCTAAGTGCTAATCAGGCG 60.203 52.381 0.00 0.00 42.39 5.52
1626 2913 0.678048 GCTCTGGTGCCCGAAGATTT 60.678 55.000 0.00 0.00 0.00 2.17
1630 2917 2.304761 TCTGGTGCCCGAAGATTTTAGT 59.695 45.455 0.00 0.00 0.00 2.24
1632 2919 1.132453 GGTGCCCGAAGATTTTAGTGC 59.868 52.381 0.00 0.00 0.00 4.40
1691 2978 6.711277 TGTGAGGCAGTTAGTCATTATTCTT 58.289 36.000 0.00 0.00 0.00 2.52
1696 2983 8.494016 AGGCAGTTAGTCATTATTCTTGTTAC 57.506 34.615 0.00 0.00 0.00 2.50
1777 3064 2.467826 GGCTCAGCGATGTTCCAGC 61.468 63.158 0.00 1.48 0.00 4.85
1785 3072 0.787787 CGATGTTCCAGCGAAAACGA 59.212 50.000 0.00 0.00 46.56 3.85
1786 3073 1.461888 CGATGTTCCAGCGAAAACGAC 60.462 52.381 0.00 0.00 46.56 4.34
1790 3077 0.528033 TTCCAGCGAAAACGACGTCA 60.528 50.000 17.16 0.00 0.00 4.35
1805 3092 3.493129 CGACGTCAAATGAGAAACCAAGA 59.507 43.478 17.16 0.00 0.00 3.02
1842 3129 2.129555 ATTGGGCGAAGAGGTGCAGT 62.130 55.000 0.00 0.00 0.00 4.40
1930 3217 4.156739 GGAATTACTGCCAAACCTCTTCAG 59.843 45.833 0.00 0.00 0.00 3.02
1931 3218 3.857157 TTACTGCCAAACCTCTTCAGT 57.143 42.857 0.00 0.00 40.60 3.41
1932 3219 2.262423 ACTGCCAAACCTCTTCAGTC 57.738 50.000 0.00 0.00 33.16 3.51
1933 3220 1.490490 ACTGCCAAACCTCTTCAGTCA 59.510 47.619 0.00 0.00 33.16 3.41
1934 3221 1.876156 CTGCCAAACCTCTTCAGTCAC 59.124 52.381 0.00 0.00 0.00 3.67
1935 3222 1.211703 TGCCAAACCTCTTCAGTCACA 59.788 47.619 0.00 0.00 0.00 3.58
1936 3223 1.876156 GCCAAACCTCTTCAGTCACAG 59.124 52.381 0.00 0.00 0.00 3.66
1937 3224 2.498167 CCAAACCTCTTCAGTCACAGG 58.502 52.381 0.00 0.00 0.00 4.00
1938 3225 1.876156 CAAACCTCTTCAGTCACAGGC 59.124 52.381 0.00 0.00 0.00 4.85
1939 3226 1.428869 AACCTCTTCAGTCACAGGCT 58.571 50.000 0.00 0.00 0.00 4.58
1967 3254 5.695041 GCTCTGGCTTTAAGCTAATGCTGT 61.695 45.833 16.89 0.00 41.99 4.40
1968 3255 7.656397 GCTCTGGCTTTAAGCTAATGCTGTG 62.656 48.000 16.89 5.97 41.99 3.66
2077 3370 4.197750 CAAGACTTGCAGCTTGATCCTAT 58.802 43.478 16.47 0.00 43.11 2.57
2111 3404 4.998051 ACATTAAATGGAAGTGGACCACT 58.002 39.130 21.99 21.99 39.59 4.00
2116 3409 0.036732 TGGAAGTGGACCACTGATGC 59.963 55.000 27.79 18.16 44.62 3.91
2155 3457 4.194640 TCTGCATACAAGATGCTCTTTCC 58.805 43.478 10.61 0.00 44.79 3.13
2218 3520 2.957402 AGAACACCTCTGAAATGCCA 57.043 45.000 0.00 0.00 31.12 4.92
2225 3527 3.449737 CACCTCTGAAATGCCAATTCCAT 59.550 43.478 0.00 0.00 0.00 3.41
2227 3529 3.454375 CTCTGAAATGCCAATTCCATGC 58.546 45.455 0.00 0.00 0.00 4.06
2259 3561 0.179073 CTAGGGGAGATGCAACACCG 60.179 60.000 4.43 0.00 0.00 4.94
2370 3751 4.479619 CAGAGCAGTTTATTTCTTGGCAC 58.520 43.478 0.00 0.00 0.00 5.01
2434 3816 7.336931 GGACTTTCTTAGGCATGTAAGATCAAA 59.663 37.037 6.62 0.00 38.53 2.69
2459 3841 9.549078 AAGTTTCATTAAGCTAGCTAGGTTATC 57.451 33.333 34.26 22.50 43.33 1.75
2462 3844 4.516365 TTAAGCTAGCTAGGTTATCGGC 57.484 45.455 34.26 15.74 43.33 5.54
2469 3851 2.167900 AGCTAGGTTATCGGCGAAACTT 59.832 45.455 15.93 17.27 0.00 2.66
2471 3853 4.038883 AGCTAGGTTATCGGCGAAACTTAT 59.961 41.667 15.93 11.76 0.00 1.73
2473 3855 5.922544 GCTAGGTTATCGGCGAAACTTATTA 59.077 40.000 15.93 0.00 0.00 0.98
2474 3856 6.589139 GCTAGGTTATCGGCGAAACTTATTAT 59.411 38.462 15.93 0.00 0.00 1.28
2547 3943 5.825151 TGAGTGATGATGGTTGTTGTTACAA 59.175 36.000 0.00 0.00 41.82 2.41
2588 3986 8.600668 TCTCCTTCCATCCTTCATAATATTCTG 58.399 37.037 0.00 0.00 0.00 3.02
2687 4090 7.646314 ACTCTGCAATTTGCTCATAATATGTC 58.354 34.615 21.19 0.00 45.31 3.06
2737 4155 3.557595 GCCGAAAGATCCACATTACTGAG 59.442 47.826 0.00 0.00 0.00 3.35
2762 4188 3.876242 TTACGAGCGGTTTGGTTTTAC 57.124 42.857 0.00 0.00 0.00 2.01
2785 4211 7.458409 ACAAAGAAGCTTGTATGATTGTGAT 57.542 32.000 2.10 0.00 37.76 3.06
2808 4253 7.818930 TGATTAAAAGGTCGAATAGGTTAACGT 59.181 33.333 6.03 6.03 0.00 3.99
2830 4275 2.859538 GTTCGTGTCGTTTTGTCCTGTA 59.140 45.455 0.00 0.00 0.00 2.74
2892 4351 8.339344 TCTTTTTGCTCTATGATTCATTCACA 57.661 30.769 4.14 0.00 37.11 3.58
2894 4353 6.441093 TTTGCTCTATGATTCATTCACACC 57.559 37.500 4.14 0.00 37.11 4.16
3047 4517 5.359860 TCGAAGAGCTAAGATGTATGTTCCA 59.640 40.000 0.00 0.00 0.00 3.53
3073 4543 0.319297 CCTGCACCAAAAGCTTCTGC 60.319 55.000 0.00 5.45 40.05 4.26
3101 4571 4.157656 ACAACTCAACAAAGTAGCAGCAAA 59.842 37.500 0.00 0.00 0.00 3.68
3114 4585 5.651139 AGTAGCAGCAAATCATCTGTTTGAT 59.349 36.000 0.00 0.00 38.51 2.57
3176 4647 1.986378 CTTCTTTACTGACTGACGGCG 59.014 52.381 4.80 4.80 0.00 6.46
3211 4695 5.125417 ACCATCTCATTGAATAAACAACGGG 59.875 40.000 0.00 0.00 32.50 5.28
3226 4710 3.190535 ACAACGGGTGCTATGAAATGTTC 59.809 43.478 0.00 0.00 0.00 3.18
3285 4778 1.450025 GGTCCGAAACTTGGTGATCC 58.550 55.000 0.00 0.00 0.00 3.36
3322 4839 2.470821 CCTATACCTTCGAGTTTGCCG 58.529 52.381 0.00 0.00 0.00 5.69
3338 4855 2.566952 GCCGCAGCAAAATTCATAGT 57.433 45.000 0.00 0.00 39.53 2.12
3339 4856 3.691049 GCCGCAGCAAAATTCATAGTA 57.309 42.857 0.00 0.00 39.53 1.82
3341 4858 3.548818 GCCGCAGCAAAATTCATAGTAGG 60.549 47.826 0.00 0.00 39.53 3.18
3343 4860 4.814234 CCGCAGCAAAATTCATAGTAGGTA 59.186 41.667 0.00 0.00 0.00 3.08
3348 4925 7.306632 GCAGCAAAATTCATAGTAGGTACGTAG 60.307 40.741 0.00 0.00 0.00 3.51
3363 4941 6.932947 AGGTACGTAGAACTTAAGCATTTCT 58.067 36.000 1.29 7.18 34.04 2.52
3472 5063 2.092267 TGGATGTCACCGGTAGCTAGTA 60.092 50.000 6.87 0.00 0.00 1.82
3487 5079 2.805099 GCTAGTATGCTCATTGTGGCTC 59.195 50.000 0.00 0.00 0.00 4.70
3488 5080 3.742327 GCTAGTATGCTCATTGTGGCTCA 60.742 47.826 0.00 0.00 0.00 4.26
3526 5118 4.677779 CGGTGAAATTAAATTCCTGGCAGG 60.678 45.833 28.01 28.01 36.46 4.85
3653 5246 2.615986 TCTTGTGGGTCAGTAGGCTA 57.384 50.000 0.00 0.00 0.00 3.93
3702 5295 8.121305 TGTATGATTTTCCAGCTTTAATGTGT 57.879 30.769 0.00 0.00 0.00 3.72
3711 5304 7.288810 TCCAGCTTTAATGTGTCTTGATTTT 57.711 32.000 0.00 0.00 0.00 1.82
3720 5313 4.206375 TGTGTCTTGATTTTCCAGCTGAA 58.794 39.130 17.39 1.24 0.00 3.02
3724 5317 5.126869 TGTCTTGATTTTCCAGCTGAAACAA 59.873 36.000 17.39 11.68 42.56 2.83
3743 5336 8.721478 TGAAACAATTAGATGCTTCAGTTAGTC 58.279 33.333 2.07 0.00 32.17 2.59
3827 5421 5.507315 CCAAGGTTTTGTGATGTAGTTGGTC 60.507 44.000 0.00 0.00 32.21 4.02
3898 5492 7.008628 CGAAGCCAATTTATGTTTTCACATCTC 59.991 37.037 0.00 0.00 43.06 2.75
3901 5495 6.351286 GCCAATTTATGTTTTCACATCTCCCT 60.351 38.462 0.00 0.00 43.06 4.20
3968 5563 6.016555 AGTTATTGTTGGCCTCCAAATTAGT 58.983 36.000 3.32 0.00 45.73 2.24
3969 5564 7.179269 AGTTATTGTTGGCCTCCAAATTAGTA 58.821 34.615 3.32 0.00 45.73 1.82
3970 5565 7.339466 AGTTATTGTTGGCCTCCAAATTAGTAG 59.661 37.037 3.32 0.00 45.73 2.57
4066 5667 2.093500 AGGCATCACGCTTGATACAGAA 60.093 45.455 5.24 0.00 40.79 3.02
4067 5668 2.286294 GGCATCACGCTTGATACAGAAG 59.714 50.000 5.24 0.00 40.79 2.85
4068 5669 2.932614 GCATCACGCTTGATACAGAAGT 59.067 45.455 5.24 0.00 40.79 3.01
4069 5670 4.112634 GCATCACGCTTGATACAGAAGTA 58.887 43.478 5.24 0.00 40.79 2.24
4079 5726 7.043722 CGCTTGATACAGAAGTAGACTGAATTC 60.044 40.741 0.00 0.00 38.55 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.341823 GTGTCATTGAGCAATCACTCCT 58.658 45.455 0.00 0.00 35.72 3.69
1 2 2.421424 GGTGTCATTGAGCAATCACTCC 59.579 50.000 12.08 8.20 35.72 3.85
2 3 3.341823 AGGTGTCATTGAGCAATCACTC 58.658 45.455 12.08 3.79 37.19 3.51
3 4 3.341823 GAGGTGTCATTGAGCAATCACT 58.658 45.455 12.08 2.88 30.67 3.41
5 6 2.306805 AGGAGGTGTCATTGAGCAATCA 59.693 45.455 0.00 0.00 0.00 2.57
6 7 2.941720 GAGGAGGTGTCATTGAGCAATC 59.058 50.000 0.00 0.00 0.00 2.67
7 8 2.356535 GGAGGAGGTGTCATTGAGCAAT 60.357 50.000 0.00 0.00 0.00 3.56
8 9 1.003580 GGAGGAGGTGTCATTGAGCAA 59.996 52.381 0.00 0.00 0.00 3.91
9 10 0.615331 GGAGGAGGTGTCATTGAGCA 59.385 55.000 0.00 0.00 0.00 4.26
10 11 0.460987 CGGAGGAGGTGTCATTGAGC 60.461 60.000 0.00 0.00 0.00 4.26
11 12 0.460987 GCGGAGGAGGTGTCATTGAG 60.461 60.000 0.00 0.00 0.00 3.02
12 13 1.596934 GCGGAGGAGGTGTCATTGA 59.403 57.895 0.00 0.00 0.00 2.57
13 14 1.450312 GGCGGAGGAGGTGTCATTG 60.450 63.158 0.00 0.00 0.00 2.82
14 15 2.990479 GGCGGAGGAGGTGTCATT 59.010 61.111 0.00 0.00 0.00 2.57
15 16 3.461773 CGGCGGAGGAGGTGTCAT 61.462 66.667 0.00 0.00 0.00 3.06
18 19 4.753662 TAGCGGCGGAGGAGGTGT 62.754 66.667 9.78 0.00 0.00 4.16
19 20 3.905678 CTAGCGGCGGAGGAGGTG 61.906 72.222 9.78 0.00 0.00 4.00
22 23 3.781770 CTTGCTAGCGGCGGAGGAG 62.782 68.421 9.78 0.00 45.43 3.69
23 24 3.838271 CTTGCTAGCGGCGGAGGA 61.838 66.667 9.78 1.62 45.43 3.71
24 25 4.899239 CCTTGCTAGCGGCGGAGG 62.899 72.222 9.78 8.20 45.43 4.30
25 26 4.899239 CCCTTGCTAGCGGCGGAG 62.899 72.222 9.78 2.84 45.43 4.63
27 28 3.969250 TTTCCCTTGCTAGCGGCGG 62.969 63.158 9.78 9.83 45.43 6.13
28 29 2.435938 TTTCCCTTGCTAGCGGCG 60.436 61.111 10.77 0.51 45.43 6.46
29 30 2.115291 CCTTTCCCTTGCTAGCGGC 61.115 63.158 10.77 0.00 42.22 6.53
30 31 1.452108 CCCTTTCCCTTGCTAGCGG 60.452 63.158 10.77 5.92 0.00 5.52
31 32 2.115291 GCCCTTTCCCTTGCTAGCG 61.115 63.158 10.77 0.00 0.00 4.26
32 33 1.000896 TGCCCTTTCCCTTGCTAGC 60.001 57.895 8.10 8.10 0.00 3.42
33 34 0.394899 CCTGCCCTTTCCCTTGCTAG 60.395 60.000 0.00 0.00 0.00 3.42
34 35 1.691219 CCTGCCCTTTCCCTTGCTA 59.309 57.895 0.00 0.00 0.00 3.49
35 36 2.442413 CCTGCCCTTTCCCTTGCT 59.558 61.111 0.00 0.00 0.00 3.91
36 37 2.681421 CCCTGCCCTTTCCCTTGC 60.681 66.667 0.00 0.00 0.00 4.01
37 38 2.681421 GCCCTGCCCTTTCCCTTG 60.681 66.667 0.00 0.00 0.00 3.61
38 39 2.866015 AGCCCTGCCCTTTCCCTT 60.866 61.111 0.00 0.00 0.00 3.95
39 40 3.665971 CAGCCCTGCCCTTTCCCT 61.666 66.667 0.00 0.00 0.00 4.20
49 50 2.739996 CCCTGACTAGGCAGCCCTG 61.740 68.421 21.08 6.33 42.90 4.45
50 51 2.366167 CCCTGACTAGGCAGCCCT 60.366 66.667 21.08 0.00 43.16 5.19
51 52 2.301738 AACCCTGACTAGGCAGCCC 61.302 63.158 21.08 0.00 43.16 5.19
52 53 1.078143 CAACCCTGACTAGGCAGCC 60.078 63.158 21.08 1.84 43.16 4.85
53 54 1.983224 TCAACCCTGACTAGGCAGC 59.017 57.895 21.08 0.00 43.16 5.25
62 63 2.280524 CGCCAACGTCAACCCTGA 60.281 61.111 0.00 0.00 33.53 3.86
63 64 3.353836 CCGCCAACGTCAACCCTG 61.354 66.667 0.00 0.00 37.70 4.45
64 65 3.530910 CTCCGCCAACGTCAACCCT 62.531 63.158 0.00 0.00 37.70 4.34
65 66 3.047877 CTCCGCCAACGTCAACCC 61.048 66.667 0.00 0.00 37.70 4.11
66 67 2.438951 TACCTCCGCCAACGTCAACC 62.439 60.000 0.00 0.00 37.70 3.77
67 68 1.005867 TACCTCCGCCAACGTCAAC 60.006 57.895 0.00 0.00 37.70 3.18
68 69 1.290955 CTACCTCCGCCAACGTCAA 59.709 57.895 0.00 0.00 37.70 3.18
69 70 2.967397 CTACCTCCGCCAACGTCA 59.033 61.111 0.00 0.00 37.70 4.35
70 71 2.508663 GCTACCTCCGCCAACGTC 60.509 66.667 0.00 0.00 37.70 4.34
71 72 4.078516 GGCTACCTCCGCCAACGT 62.079 66.667 0.00 0.00 46.77 3.99
77 78 1.019805 GTGTGAAAGGCTACCTCCGC 61.020 60.000 0.00 0.00 30.89 5.54
78 79 0.736325 CGTGTGAAAGGCTACCTCCG 60.736 60.000 0.00 0.00 30.89 4.63
79 80 0.606604 TCGTGTGAAAGGCTACCTCC 59.393 55.000 0.00 0.00 30.89 4.30
80 81 2.271800 CATCGTGTGAAAGGCTACCTC 58.728 52.381 0.00 0.00 30.89 3.85
81 82 1.676014 GCATCGTGTGAAAGGCTACCT 60.676 52.381 0.00 0.00 33.87 3.08
82 83 0.727398 GCATCGTGTGAAAGGCTACC 59.273 55.000 0.00 0.00 0.00 3.18
83 84 1.438651 TGCATCGTGTGAAAGGCTAC 58.561 50.000 0.00 0.00 0.00 3.58
84 85 2.009051 CATGCATCGTGTGAAAGGCTA 58.991 47.619 0.00 0.00 0.00 3.93
85 86 0.806868 CATGCATCGTGTGAAAGGCT 59.193 50.000 0.00 0.00 0.00 4.58
86 87 0.804364 TCATGCATCGTGTGAAAGGC 59.196 50.000 0.00 0.00 0.00 4.35
87 88 1.399440 CCTCATGCATCGTGTGAAAGG 59.601 52.381 0.00 0.00 0.00 3.11
88 89 2.349590 TCCTCATGCATCGTGTGAAAG 58.650 47.619 0.00 0.00 0.00 2.62
89 90 2.470983 TCCTCATGCATCGTGTGAAA 57.529 45.000 0.00 0.00 0.00 2.69
90 91 2.289631 ACTTCCTCATGCATCGTGTGAA 60.290 45.455 0.00 0.00 0.00 3.18
91 92 1.276138 ACTTCCTCATGCATCGTGTGA 59.724 47.619 0.00 0.00 0.00 3.58
92 93 1.395954 CACTTCCTCATGCATCGTGTG 59.604 52.381 0.00 0.00 0.00 3.82
93 94 1.276138 TCACTTCCTCATGCATCGTGT 59.724 47.619 0.00 0.00 0.00 4.49
94 95 1.931841 CTCACTTCCTCATGCATCGTG 59.068 52.381 0.00 0.00 0.00 4.35
95 96 1.552337 ACTCACTTCCTCATGCATCGT 59.448 47.619 0.00 0.00 0.00 3.73
96 97 2.306341 ACTCACTTCCTCATGCATCG 57.694 50.000 0.00 0.00 0.00 3.84
97 98 3.129871 GCTACTCACTTCCTCATGCATC 58.870 50.000 0.00 0.00 0.00 3.91
98 99 2.770802 AGCTACTCACTTCCTCATGCAT 59.229 45.455 0.00 0.00 0.00 3.96
99 100 2.167281 GAGCTACTCACTTCCTCATGCA 59.833 50.000 0.00 0.00 0.00 3.96
100 101 2.482839 GGAGCTACTCACTTCCTCATGC 60.483 54.545 0.00 0.00 31.08 4.06
101 102 3.030291 AGGAGCTACTCACTTCCTCATG 58.970 50.000 0.00 0.00 31.08 3.07
102 103 3.396685 AGGAGCTACTCACTTCCTCAT 57.603 47.619 0.00 0.00 31.08 2.90
103 104 2.909504 AGGAGCTACTCACTTCCTCA 57.090 50.000 0.00 0.00 31.08 3.86
104 105 3.259625 ACAAAGGAGCTACTCACTTCCTC 59.740 47.826 0.00 0.00 31.08 3.71
105 106 3.007398 CACAAAGGAGCTACTCACTTCCT 59.993 47.826 0.00 0.00 31.08 3.36
106 107 3.006967 TCACAAAGGAGCTACTCACTTCC 59.993 47.826 0.00 0.00 31.08 3.46
107 108 4.241681 CTCACAAAGGAGCTACTCACTTC 58.758 47.826 0.00 0.00 31.08 3.01
108 109 3.643792 ACTCACAAAGGAGCTACTCACTT 59.356 43.478 0.00 0.00 38.50 3.16
109 110 3.006323 CACTCACAAAGGAGCTACTCACT 59.994 47.826 0.00 0.00 38.50 3.41
110 111 3.243907 ACACTCACAAAGGAGCTACTCAC 60.244 47.826 0.00 0.00 38.50 3.51
111 112 2.965831 ACACTCACAAAGGAGCTACTCA 59.034 45.455 0.00 0.00 38.50 3.41
112 113 3.005897 TGACACTCACAAAGGAGCTACTC 59.994 47.826 0.00 0.00 38.50 2.59
113 114 2.965831 TGACACTCACAAAGGAGCTACT 59.034 45.455 0.00 0.00 38.50 2.57
114 115 3.321497 CTGACACTCACAAAGGAGCTAC 58.679 50.000 0.00 0.00 38.50 3.58
115 116 2.300152 CCTGACACTCACAAAGGAGCTA 59.700 50.000 0.00 0.00 38.50 3.32
116 117 1.071385 CCTGACACTCACAAAGGAGCT 59.929 52.381 0.00 0.00 38.50 4.09
117 118 1.517242 CCTGACACTCACAAAGGAGC 58.483 55.000 0.00 0.00 38.50 4.70
118 119 1.517242 GCCTGACACTCACAAAGGAG 58.483 55.000 0.00 0.00 40.79 3.69
119 120 0.249868 CGCCTGACACTCACAAAGGA 60.250 55.000 0.00 0.00 0.00 3.36
120 121 1.230635 CCGCCTGACACTCACAAAGG 61.231 60.000 0.00 0.00 0.00 3.11
121 122 1.845809 GCCGCCTGACACTCACAAAG 61.846 60.000 0.00 0.00 0.00 2.77
122 123 1.891919 GCCGCCTGACACTCACAAA 60.892 57.895 0.00 0.00 0.00 2.83
123 124 2.280797 GCCGCCTGACACTCACAA 60.281 61.111 0.00 0.00 0.00 3.33
124 125 4.314440 GGCCGCCTGACACTCACA 62.314 66.667 0.71 0.00 0.00 3.58
169 170 2.736144 TATATAGCTTCGCCGGTTGG 57.264 50.000 1.90 0.00 38.77 3.77
170 171 5.408356 AGTTATATATAGCTTCGCCGGTTG 58.592 41.667 1.90 0.00 0.00 3.77
171 172 5.418209 AGAGTTATATATAGCTTCGCCGGTT 59.582 40.000 10.11 0.00 0.00 4.44
172 173 4.948621 AGAGTTATATATAGCTTCGCCGGT 59.051 41.667 10.11 0.00 0.00 5.28
173 174 5.274718 CAGAGTTATATATAGCTTCGCCGG 58.725 45.833 10.11 0.00 0.00 6.13
174 175 5.274718 CCAGAGTTATATATAGCTTCGCCG 58.725 45.833 10.11 0.00 0.00 6.46
175 176 5.452077 CCCCAGAGTTATATATAGCTTCGCC 60.452 48.000 10.11 0.00 0.00 5.54
176 177 5.452077 CCCCCAGAGTTATATATAGCTTCGC 60.452 48.000 10.11 0.00 0.00 4.70
177 178 5.657302 ACCCCCAGAGTTATATATAGCTTCG 59.343 44.000 10.11 5.28 0.00 3.79
178 179 7.038231 ACAACCCCCAGAGTTATATATAGCTTC 60.038 40.741 10.11 4.81 0.00 3.86
179 180 6.792977 ACAACCCCCAGAGTTATATATAGCTT 59.207 38.462 10.11 0.00 0.00 3.74
180 181 6.213600 CACAACCCCCAGAGTTATATATAGCT 59.786 42.308 8.69 8.69 0.00 3.32
181 182 6.407202 CACAACCCCCAGAGTTATATATAGC 58.593 44.000 0.00 0.00 0.00 2.97
182 183 6.576442 GCCACAACCCCCAGAGTTATATATAG 60.576 46.154 0.00 0.00 0.00 1.31
183 184 5.249852 GCCACAACCCCCAGAGTTATATATA 59.750 44.000 0.00 0.00 0.00 0.86
184 185 4.042934 GCCACAACCCCCAGAGTTATATAT 59.957 45.833 0.00 0.00 0.00 0.86
185 186 3.393278 GCCACAACCCCCAGAGTTATATA 59.607 47.826 0.00 0.00 0.00 0.86
186 187 2.174854 GCCACAACCCCCAGAGTTATAT 59.825 50.000 0.00 0.00 0.00 0.86
187 188 1.562475 GCCACAACCCCCAGAGTTATA 59.438 52.381 0.00 0.00 0.00 0.98
188 189 0.331616 GCCACAACCCCCAGAGTTAT 59.668 55.000 0.00 0.00 0.00 1.89
189 190 1.765074 GCCACAACCCCCAGAGTTA 59.235 57.895 0.00 0.00 0.00 2.24
190 191 2.520968 GCCACAACCCCCAGAGTT 59.479 61.111 0.00 0.00 0.00 3.01
191 192 3.580319 GGCCACAACCCCCAGAGT 61.580 66.667 0.00 0.00 0.00 3.24
192 193 3.260100 AGGCCACAACCCCCAGAG 61.260 66.667 5.01 0.00 0.00 3.35
193 194 3.256960 GAGGCCACAACCCCCAGA 61.257 66.667 5.01 0.00 0.00 3.86
194 195 4.366684 GGAGGCCACAACCCCCAG 62.367 72.222 5.01 0.00 0.00 4.45
196 197 3.909651 TTGGAGGCCACAACCCCC 61.910 66.667 5.01 0.00 30.78 5.40
197 198 2.600470 GTTGGAGGCCACAACCCC 60.600 66.667 24.84 9.07 41.70 4.95
200 201 0.755327 ACAAGGTTGGAGGCCACAAC 60.755 55.000 26.37 26.37 45.60 3.32
201 202 0.847373 TACAAGGTTGGAGGCCACAA 59.153 50.000 5.01 7.23 30.78 3.33
202 203 0.109723 GTACAAGGTTGGAGGCCACA 59.890 55.000 5.01 0.00 30.78 4.17
203 204 0.608308 GGTACAAGGTTGGAGGCCAC 60.608 60.000 5.01 0.00 30.78 5.01
204 205 1.063070 TGGTACAAGGTTGGAGGCCA 61.063 55.000 5.01 0.00 31.92 5.36
205 206 1.765074 TGGTACAAGGTTGGAGGCC 59.235 57.895 0.00 0.00 31.92 5.19
238 239 5.530176 TCTAAGCACTCCCCCTAATTTTT 57.470 39.130 0.00 0.00 0.00 1.94
239 240 5.193728 TGATCTAAGCACTCCCCCTAATTTT 59.806 40.000 0.00 0.00 0.00 1.82
240 241 4.726825 TGATCTAAGCACTCCCCCTAATTT 59.273 41.667 0.00 0.00 0.00 1.82
241 242 4.307259 TGATCTAAGCACTCCCCCTAATT 58.693 43.478 0.00 0.00 0.00 1.40
242 243 3.906846 CTGATCTAAGCACTCCCCCTAAT 59.093 47.826 0.00 0.00 0.00 1.73
243 244 3.052109 TCTGATCTAAGCACTCCCCCTAA 60.052 47.826 0.00 0.00 0.00 2.69
244 245 2.518407 TCTGATCTAAGCACTCCCCCTA 59.482 50.000 0.00 0.00 0.00 3.53
245 246 1.292242 TCTGATCTAAGCACTCCCCCT 59.708 52.381 0.00 0.00 0.00 4.79
246 247 1.794714 TCTGATCTAAGCACTCCCCC 58.205 55.000 0.00 0.00 0.00 5.40
247 248 2.968574 TCATCTGATCTAAGCACTCCCC 59.031 50.000 0.00 0.00 0.00 4.81
248 249 3.894427 TCTCATCTGATCTAAGCACTCCC 59.106 47.826 0.00 0.00 0.00 4.30
249 250 5.713025 GATCTCATCTGATCTAAGCACTCC 58.287 45.833 0.00 0.00 39.61 3.85
259 260 7.546667 GGATGCTAAAGAAGATCTCATCTGATC 59.453 40.741 14.48 0.00 40.13 2.92
260 261 7.388437 GGATGCTAAAGAAGATCTCATCTGAT 58.612 38.462 14.48 4.20 40.13 2.90
261 262 6.239543 GGGATGCTAAAGAAGATCTCATCTGA 60.240 42.308 14.48 0.77 40.13 3.27
262 263 5.933463 GGGATGCTAAAGAAGATCTCATCTG 59.067 44.000 14.48 0.00 40.13 2.90
263 264 5.605908 TGGGATGCTAAAGAAGATCTCATCT 59.394 40.000 14.48 5.02 42.61 2.90
264 265 5.862845 TGGGATGCTAAAGAAGATCTCATC 58.137 41.667 0.00 2.73 0.00 2.92
265 266 5.221884 CCTGGGATGCTAAAGAAGATCTCAT 60.222 44.000 0.00 0.00 28.31 2.90
266 267 4.102210 CCTGGGATGCTAAAGAAGATCTCA 59.898 45.833 0.00 0.00 0.00 3.27
267 268 4.640364 CCTGGGATGCTAAAGAAGATCTC 58.360 47.826 0.00 0.00 0.00 2.75
268 269 3.181446 GCCTGGGATGCTAAAGAAGATCT 60.181 47.826 0.00 0.00 0.00 2.75
269 270 3.145286 GCCTGGGATGCTAAAGAAGATC 58.855 50.000 0.00 0.00 0.00 2.75
270 271 2.158549 GGCCTGGGATGCTAAAGAAGAT 60.159 50.000 0.00 0.00 0.00 2.40
271 272 1.212935 GGCCTGGGATGCTAAAGAAGA 59.787 52.381 0.00 0.00 0.00 2.87
272 273 1.213926 AGGCCTGGGATGCTAAAGAAG 59.786 52.381 3.11 0.00 0.00 2.85
273 274 1.298953 AGGCCTGGGATGCTAAAGAA 58.701 50.000 3.11 0.00 0.00 2.52
274 275 1.298953 AAGGCCTGGGATGCTAAAGA 58.701 50.000 5.69 0.00 0.00 2.52
275 276 2.856222 CTAAGGCCTGGGATGCTAAAG 58.144 52.381 5.69 0.00 0.00 1.85
276 277 1.133792 GCTAAGGCCTGGGATGCTAAA 60.134 52.381 5.69 0.00 0.00 1.85
277 278 0.474184 GCTAAGGCCTGGGATGCTAA 59.526 55.000 5.69 0.00 0.00 3.09
278 279 2.145865 GCTAAGGCCTGGGATGCTA 58.854 57.895 5.69 0.00 0.00 3.49
279 280 2.922234 GCTAAGGCCTGGGATGCT 59.078 61.111 5.69 0.00 0.00 3.79
317 318 3.946201 CTGCTAGGGATGGGGGCG 61.946 72.222 0.00 0.00 0.00 6.13
318 319 4.277009 GCTGCTAGGGATGGGGGC 62.277 72.222 0.00 0.00 0.00 5.80
319 320 2.773918 TGCTGCTAGGGATGGGGG 60.774 66.667 0.00 0.00 0.00 5.40
320 321 1.639635 AACTGCTGCTAGGGATGGGG 61.640 60.000 0.00 0.00 0.00 4.96
321 322 0.257039 AAACTGCTGCTAGGGATGGG 59.743 55.000 0.00 0.00 0.00 4.00
322 323 1.211457 AGAAACTGCTGCTAGGGATGG 59.789 52.381 0.00 0.00 0.00 3.51
323 324 2.706339 AGAAACTGCTGCTAGGGATG 57.294 50.000 0.00 0.00 0.00 3.51
324 325 2.101582 CGTAGAAACTGCTGCTAGGGAT 59.898 50.000 0.00 0.00 0.00 3.85
325 326 1.476891 CGTAGAAACTGCTGCTAGGGA 59.523 52.381 0.00 0.00 0.00 4.20
326 327 1.204941 ACGTAGAAACTGCTGCTAGGG 59.795 52.381 0.00 0.00 0.00 3.53
327 328 2.656560 ACGTAGAAACTGCTGCTAGG 57.343 50.000 0.00 0.00 0.00 3.02
328 329 3.109619 GCTACGTAGAAACTGCTGCTAG 58.890 50.000 26.53 0.00 0.00 3.42
329 330 2.753452 AGCTACGTAGAAACTGCTGCTA 59.247 45.455 26.53 0.00 0.00 3.49
330 331 1.546476 AGCTACGTAGAAACTGCTGCT 59.454 47.619 26.53 10.40 0.00 4.24
331 332 1.921230 GAGCTACGTAGAAACTGCTGC 59.079 52.381 26.53 8.13 0.00 5.25
332 333 3.175152 CAGAGCTACGTAGAAACTGCTG 58.825 50.000 26.53 16.54 0.00 4.41
333 334 2.820787 ACAGAGCTACGTAGAAACTGCT 59.179 45.455 26.53 15.26 0.00 4.24
334 335 3.172824 GACAGAGCTACGTAGAAACTGC 58.827 50.000 26.53 18.79 0.00 4.40
335 336 3.418094 CGACAGAGCTACGTAGAAACTG 58.582 50.000 26.53 26.60 0.00 3.16
336 337 2.159544 GCGACAGAGCTACGTAGAAACT 60.160 50.000 26.53 16.73 0.00 2.66
337 338 2.175566 GCGACAGAGCTACGTAGAAAC 58.824 52.381 26.53 14.87 0.00 2.78
338 339 2.539346 GCGACAGAGCTACGTAGAAA 57.461 50.000 26.53 0.00 0.00 2.52
348 349 3.177920 CACGAGCAGCGACAGAGC 61.178 66.667 5.99 0.00 44.57 4.09
349 350 3.177920 GCACGAGCAGCGACAGAG 61.178 66.667 0.00 0.00 44.57 3.35
350 351 4.724602 GGCACGAGCAGCGACAGA 62.725 66.667 7.26 0.00 44.57 3.41
354 355 4.742201 GAAGGGCACGAGCAGCGA 62.742 66.667 7.26 0.00 44.57 4.93
357 358 3.883744 AACGGAAGGGCACGAGCAG 62.884 63.158 7.26 0.00 44.61 4.24
358 359 3.936203 AACGGAAGGGCACGAGCA 61.936 61.111 7.26 0.00 44.61 4.26
359 360 3.423154 CAACGGAAGGGCACGAGC 61.423 66.667 0.00 0.00 41.10 5.03
360 361 3.423154 GCAACGGAAGGGCACGAG 61.423 66.667 0.00 0.00 35.87 4.18
361 362 3.936203 AGCAACGGAAGGGCACGA 61.936 61.111 0.00 0.00 37.88 4.35
362 363 3.726517 CAGCAACGGAAGGGCACG 61.727 66.667 0.00 0.00 37.88 5.34
363 364 3.365265 CCAGCAACGGAAGGGCAC 61.365 66.667 0.00 0.00 37.88 5.01
364 365 3.126703 TTCCAGCAACGGAAGGGCA 62.127 57.895 0.00 0.00 40.20 5.36
365 366 2.282180 TTCCAGCAACGGAAGGGC 60.282 61.111 0.00 0.00 40.20 5.19
369 370 1.072505 GGTCCTTCCAGCAACGGAA 59.927 57.895 2.71 2.71 42.89 4.30
370 371 2.144078 TGGTCCTTCCAGCAACGGA 61.144 57.895 0.00 0.00 41.93 4.69
371 372 2.429930 TGGTCCTTCCAGCAACGG 59.570 61.111 0.00 0.00 41.93 4.44
381 382 3.007940 TCATCATCGTTGAAGTGGTCCTT 59.992 43.478 0.00 0.00 34.96 3.36
382 383 2.567169 TCATCATCGTTGAAGTGGTCCT 59.433 45.455 0.00 0.00 34.96 3.85
383 384 2.673368 GTCATCATCGTTGAAGTGGTCC 59.327 50.000 0.00 0.00 34.96 4.46
384 385 3.589988 AGTCATCATCGTTGAAGTGGTC 58.410 45.455 0.00 0.00 34.96 4.02
385 386 3.685139 AGTCATCATCGTTGAAGTGGT 57.315 42.857 0.00 0.00 34.96 4.16
386 387 4.748892 AGTAGTCATCATCGTTGAAGTGG 58.251 43.478 0.00 0.00 34.96 4.00
387 388 5.452623 CGTAGTAGTCATCATCGTTGAAGTG 59.547 44.000 0.00 0.00 34.96 3.16
388 389 5.353400 TCGTAGTAGTCATCATCGTTGAAGT 59.647 40.000 0.00 0.00 34.96 3.01
389 390 5.807344 TCGTAGTAGTCATCATCGTTGAAG 58.193 41.667 0.00 0.00 34.96 3.02
390 391 5.806366 TCGTAGTAGTCATCATCGTTGAA 57.194 39.130 0.00 0.00 34.96 2.69
391 392 5.220796 CCTTCGTAGTAGTCATCATCGTTGA 60.221 44.000 0.00 0.00 36.00 3.18
392 393 4.970611 CCTTCGTAGTAGTCATCATCGTTG 59.029 45.833 0.00 0.00 0.00 4.10
393 394 4.639310 ACCTTCGTAGTAGTCATCATCGTT 59.361 41.667 0.00 0.00 0.00 3.85
394 395 4.035324 CACCTTCGTAGTAGTCATCATCGT 59.965 45.833 0.00 0.00 0.00 3.73
395 396 4.528504 CACCTTCGTAGTAGTCATCATCG 58.471 47.826 0.00 0.00 0.00 3.84
396 397 4.291783 GCACCTTCGTAGTAGTCATCATC 58.708 47.826 0.00 0.00 0.00 2.92
397 398 3.068307 GGCACCTTCGTAGTAGTCATCAT 59.932 47.826 0.00 0.00 0.00 2.45
398 399 2.426024 GGCACCTTCGTAGTAGTCATCA 59.574 50.000 0.00 0.00 0.00 3.07
399 400 2.426024 TGGCACCTTCGTAGTAGTCATC 59.574 50.000 0.00 0.00 0.00 2.92
400 401 2.453521 TGGCACCTTCGTAGTAGTCAT 58.546 47.619 0.00 0.00 0.00 3.06
401 402 1.913778 TGGCACCTTCGTAGTAGTCA 58.086 50.000 0.00 0.00 0.00 3.41
402 403 2.603953 GTTGGCACCTTCGTAGTAGTC 58.396 52.381 0.00 0.00 0.00 2.59
403 404 1.068055 CGTTGGCACCTTCGTAGTAGT 60.068 52.381 0.00 0.00 0.00 2.73
404 405 1.625616 CGTTGGCACCTTCGTAGTAG 58.374 55.000 0.00 0.00 0.00 2.57
405 406 0.244450 CCGTTGGCACCTTCGTAGTA 59.756 55.000 0.00 0.00 0.00 1.82
406 407 1.005394 CCGTTGGCACCTTCGTAGT 60.005 57.895 0.00 0.00 0.00 2.73
407 408 3.870606 CCGTTGGCACCTTCGTAG 58.129 61.111 0.00 0.00 0.00 3.51
418 419 0.664761 CATGAATGGCTAGCCGTTGG 59.335 55.000 39.52 25.61 44.61 3.77
419 420 0.029834 GCATGAATGGCTAGCCGTTG 59.970 55.000 39.52 28.40 44.61 4.10
420 421 0.394216 TGCATGAATGGCTAGCCGTT 60.394 50.000 36.07 36.07 46.99 4.44
421 422 0.179009 ATGCATGAATGGCTAGCCGT 60.179 50.000 28.28 25.94 39.42 5.68
422 423 1.466167 GTATGCATGAATGGCTAGCCG 59.534 52.381 28.28 14.10 39.42 5.52
423 424 2.507484 TGTATGCATGAATGGCTAGCC 58.493 47.619 27.71 27.71 0.00 3.93
424 425 3.057736 CCTTGTATGCATGAATGGCTAGC 60.058 47.826 10.16 6.04 0.00 3.42
425 426 4.139786 ACCTTGTATGCATGAATGGCTAG 58.860 43.478 10.16 0.00 0.00 3.42
426 427 4.136796 GACCTTGTATGCATGAATGGCTA 58.863 43.478 10.16 0.00 0.00 3.93
427 428 2.954318 GACCTTGTATGCATGAATGGCT 59.046 45.455 10.16 0.87 0.00 4.75
428 429 2.689471 TGACCTTGTATGCATGAATGGC 59.311 45.455 10.16 2.11 0.00 4.40
429 430 5.163488 ACAATGACCTTGTATGCATGAATGG 60.163 40.000 10.16 11.07 46.30 3.16
430 431 5.898174 ACAATGACCTTGTATGCATGAATG 58.102 37.500 10.16 1.99 46.30 2.67
442 443 5.385509 AATTTTACCGGACAATGACCTTG 57.614 39.130 9.46 0.00 40.90 3.61
443 444 6.243148 ACTAATTTTACCGGACAATGACCTT 58.757 36.000 9.46 0.00 0.00 3.50
444 445 5.812286 ACTAATTTTACCGGACAATGACCT 58.188 37.500 9.46 0.00 0.00 3.85
445 446 6.505044 AACTAATTTTACCGGACAATGACC 57.495 37.500 9.46 0.00 0.00 4.02
446 447 9.498307 CATAAACTAATTTTACCGGACAATGAC 57.502 33.333 9.46 0.00 32.29 3.06
447 448 9.233649 ACATAAACTAATTTTACCGGACAATGA 57.766 29.630 9.46 0.00 32.29 2.57
448 449 9.849166 AACATAAACTAATTTTACCGGACAATG 57.151 29.630 9.46 0.00 32.29 2.82
471 472 8.945057 AGTACGTTCAACTAAAACCTAAAAACA 58.055 29.630 0.00 0.00 0.00 2.83
494 496 9.887629 TTTACATAAACCCGATCATGTTTAGTA 57.112 29.630 17.03 15.43 39.51 1.82
531 533 6.645306 TGGAATTCATGCAAATGAACATCAT 58.355 32.000 7.93 0.00 42.57 2.45
554 556 6.040054 TGAAGATAATCCATGCAAACAGGATG 59.960 38.462 12.32 0.00 44.83 3.51
588 590 4.546570 GCTTGCAAACCTCTTTTCGTAAT 58.453 39.130 0.00 0.00 0.00 1.89
594 596 1.748493 TGACGCTTGCAAACCTCTTTT 59.252 42.857 0.00 0.00 0.00 2.27
596 598 1.609208 ATGACGCTTGCAAACCTCTT 58.391 45.000 0.00 0.00 0.00 2.85
597 599 2.472695 TATGACGCTTGCAAACCTCT 57.527 45.000 0.00 0.00 0.00 3.69
599 601 2.710377 TCATATGACGCTTGCAAACCT 58.290 42.857 0.00 0.00 0.00 3.50
600 602 3.698029 ATCATATGACGCTTGCAAACC 57.302 42.857 7.78 0.00 0.00 3.27
601 603 3.792956 CCAATCATATGACGCTTGCAAAC 59.207 43.478 7.78 0.00 0.00 2.93
604 606 1.334556 GCCAATCATATGACGCTTGCA 59.665 47.619 7.78 0.00 0.00 4.08
605 607 1.334556 TGCCAATCATATGACGCTTGC 59.665 47.619 7.78 7.47 0.00 4.01
606 608 3.666111 CGATGCCAATCATATGACGCTTG 60.666 47.826 7.78 8.91 35.05 4.01
607 609 2.481568 CGATGCCAATCATATGACGCTT 59.518 45.455 7.78 8.26 35.05 4.68
608 610 2.071540 CGATGCCAATCATATGACGCT 58.928 47.619 7.78 1.10 35.05 5.07
609 611 1.129251 CCGATGCCAATCATATGACGC 59.871 52.381 7.78 10.58 35.05 5.19
610 612 2.416747 ACCGATGCCAATCATATGACG 58.583 47.619 7.78 5.14 35.05 4.35
611 613 4.268644 CGATACCGATGCCAATCATATGAC 59.731 45.833 7.78 0.00 38.22 3.06
612 614 4.432712 CGATACCGATGCCAATCATATGA 58.567 43.478 8.10 8.10 38.22 2.15
613 615 3.557185 CCGATACCGATGCCAATCATATG 59.443 47.826 0.00 0.00 38.22 1.78
614 616 3.197766 ACCGATACCGATGCCAATCATAT 59.802 43.478 0.00 0.00 38.22 1.78
615 617 2.565391 ACCGATACCGATGCCAATCATA 59.435 45.455 0.00 0.00 38.22 2.15
616 618 1.347707 ACCGATACCGATGCCAATCAT 59.652 47.619 0.00 0.00 38.22 2.45
617 619 0.756294 ACCGATACCGATGCCAATCA 59.244 50.000 0.00 0.00 38.22 2.57
618 620 2.736144 TACCGATACCGATGCCAATC 57.264 50.000 0.00 0.00 38.22 2.67
619 621 2.565391 TGATACCGATACCGATGCCAAT 59.435 45.455 0.00 0.00 38.22 3.16
620 622 1.964933 TGATACCGATACCGATGCCAA 59.035 47.619 0.00 0.00 38.22 4.52
621 623 1.623163 TGATACCGATACCGATGCCA 58.377 50.000 0.00 0.00 38.22 4.92
622 624 2.165641 TCATGATACCGATACCGATGCC 59.834 50.000 0.00 0.00 38.22 4.40
623 625 3.503827 TCATGATACCGATACCGATGC 57.496 47.619 0.00 0.00 38.22 3.91
624 626 5.248870 TGATCATGATACCGATACCGATG 57.751 43.478 8.54 0.00 38.22 3.84
625 627 4.202060 GCTGATCATGATACCGATACCGAT 60.202 45.833 8.54 0.00 38.22 4.18
626 628 3.128764 GCTGATCATGATACCGATACCGA 59.871 47.826 8.54 0.00 38.22 4.69
627 629 3.439293 GCTGATCATGATACCGATACCG 58.561 50.000 8.54 0.00 0.00 4.02
628 630 3.439293 CGCTGATCATGATACCGATACC 58.561 50.000 8.54 0.00 0.00 2.73
629 631 3.128764 TCCGCTGATCATGATACCGATAC 59.871 47.826 8.54 0.00 0.00 2.24
630 632 3.352648 TCCGCTGATCATGATACCGATA 58.647 45.455 8.54 1.52 0.00 2.92
631 633 2.171003 TCCGCTGATCATGATACCGAT 58.829 47.619 8.54 0.00 0.00 4.18
632 634 1.616159 TCCGCTGATCATGATACCGA 58.384 50.000 8.54 0.00 0.00 4.69
633 635 2.265683 CATCCGCTGATCATGATACCG 58.734 52.381 8.54 11.10 0.00 4.02
634 636 2.998670 CACATCCGCTGATCATGATACC 59.001 50.000 8.54 0.00 0.00 2.73
635 637 3.657634 ACACATCCGCTGATCATGATAC 58.342 45.455 8.54 3.31 0.00 2.24
636 638 3.306294 GGACACATCCGCTGATCATGATA 60.306 47.826 8.54 0.00 34.48 2.15
637 639 2.549563 GGACACATCCGCTGATCATGAT 60.550 50.000 8.25 8.25 34.48 2.45
638 640 1.202568 GGACACATCCGCTGATCATGA 60.203 52.381 0.00 0.00 34.48 3.07
639 641 1.224075 GGACACATCCGCTGATCATG 58.776 55.000 0.00 0.00 34.48 3.07
640 642 3.694364 GGACACATCCGCTGATCAT 57.306 52.632 0.00 0.00 34.48 2.45
656 658 2.865119 TACTACTGTCTGTCCACGGA 57.135 50.000 0.00 0.00 0.00 4.69
657 659 2.753452 ACATACTACTGTCTGTCCACGG 59.247 50.000 0.00 0.00 29.13 4.94
658 660 4.017380 GACATACTACTGTCTGTCCACG 57.983 50.000 4.14 0.00 41.52 4.94
665 667 4.322499 CCCAAAACGGACATACTACTGTCT 60.322 45.833 4.41 0.00 44.05 3.41
666 668 3.930848 CCCAAAACGGACATACTACTGTC 59.069 47.826 0.00 0.00 43.90 3.51
667 669 3.579586 TCCCAAAACGGACATACTACTGT 59.420 43.478 0.00 0.00 36.56 3.55
668 670 4.181578 CTCCCAAAACGGACATACTACTG 58.818 47.826 0.00 0.00 36.56 2.74
669 671 3.197116 CCTCCCAAAACGGACATACTACT 59.803 47.826 0.00 0.00 36.56 2.57
670 672 3.528532 CCTCCCAAAACGGACATACTAC 58.471 50.000 0.00 0.00 36.56 2.73
671 673 2.093341 GCCTCCCAAAACGGACATACTA 60.093 50.000 0.00 0.00 36.56 1.82
672 674 1.339727 GCCTCCCAAAACGGACATACT 60.340 52.381 0.00 0.00 36.56 2.12
690 692 4.623002 TCGGTTTTTCCAATTTGTTAGCC 58.377 39.130 0.00 0.00 35.57 3.93
710 712 1.337821 CTCGGTTTTCGGAGAACTCG 58.662 55.000 10.73 11.83 45.99 4.18
728 730 0.108138 CCGTGATTTCTCCCGCTTCT 60.108 55.000 0.00 0.00 0.00 2.85
784 794 3.339093 GTGGGGGAAGGGACAGGG 61.339 72.222 0.00 0.00 0.00 4.45
785 795 3.339093 GGTGGGGGAAGGGACAGG 61.339 72.222 0.00 0.00 0.00 4.00
794 804 4.918360 AGGTGCTGTGGTGGGGGA 62.918 66.667 0.00 0.00 0.00 4.81
992 1496 1.992277 ACTGGCTTCATCTCCGCCT 60.992 57.895 0.00 0.00 44.09 5.52
1190 1828 2.401766 GGCCGATGTTGCAGACAGG 61.402 63.158 7.58 5.75 42.62 4.00
1267 2512 8.687824 AACATGTAAACATAGTTTGCATAAGC 57.312 30.769 20.32 0.00 33.94 3.09
1314 2564 4.422073 TCTGCTACATTCCTTGTATGGG 57.578 45.455 0.00 0.00 40.02 4.00
1389 2653 1.388888 CGCTTGCTGTTTTTCGTCAG 58.611 50.000 0.00 0.00 35.12 3.51
1424 2695 8.237267 CGTCTGGCTTTTCTCTTAATAAAATGT 58.763 33.333 0.00 0.00 0.00 2.71
1520 2791 3.427573 AGTAAAGGGCAATGTGGTTACC 58.572 45.455 0.00 0.00 0.00 2.85
1551 2822 0.748005 GAAATAGCCGCCTGGAGCAA 60.748 55.000 11.14 0.00 44.04 3.91
1552 2823 1.153168 GAAATAGCCGCCTGGAGCA 60.153 57.895 11.14 0.00 44.04 4.26
1553 2824 0.464554 AAGAAATAGCCGCCTGGAGC 60.465 55.000 0.00 0.00 37.49 4.70
1626 2913 4.384208 GCTATGGAAGGAAAGGAGCACTAA 60.384 45.833 0.00 0.00 0.00 2.24
1630 2917 2.092753 CAGCTATGGAAGGAAAGGAGCA 60.093 50.000 0.00 0.00 0.00 4.26
1632 2919 2.570135 GCAGCTATGGAAGGAAAGGAG 58.430 52.381 0.00 0.00 0.00 3.69
1696 2983 1.408822 GGTCAGACAAAGCCCCTATGG 60.409 57.143 2.17 0.00 37.09 2.74
1754 3041 1.424493 GAACATCGCTGAGCCGGAAG 61.424 60.000 5.05 0.00 0.00 3.46
1777 3064 3.763756 TCTCATTTGACGTCGTTTTCG 57.236 42.857 11.62 0.00 45.64 3.46
1785 3072 4.451900 AGTCTTGGTTTCTCATTTGACGT 58.548 39.130 0.00 0.00 0.00 4.34
1786 3073 4.083802 GGAGTCTTGGTTTCTCATTTGACG 60.084 45.833 0.00 0.00 0.00 4.35
1790 3077 4.731313 AGGGAGTCTTGGTTTCTCATTT 57.269 40.909 0.00 0.00 0.00 2.32
1866 3153 1.065926 CCAATGAGTGTGCCAGAGCTA 60.066 52.381 0.00 0.00 40.80 3.32
1869 3156 2.350522 GTACCAATGAGTGTGCCAGAG 58.649 52.381 0.00 0.00 0.00 3.35
1930 3217 0.669932 CAGAGCTGTGAGCCTGTGAC 60.670 60.000 4.50 0.00 43.77 3.67
1931 3218 1.670015 CAGAGCTGTGAGCCTGTGA 59.330 57.895 4.50 0.00 43.77 3.58
1932 3219 1.375652 CCAGAGCTGTGAGCCTGTG 60.376 63.158 13.38 0.00 43.77 3.66
1933 3220 3.067091 CCAGAGCTGTGAGCCTGT 58.933 61.111 13.38 0.00 43.77 4.00
1934 3221 2.436292 GCCAGAGCTGTGAGCCTG 60.436 66.667 13.38 1.28 43.77 4.85
1967 3254 0.326595 TTATTCAGAACGGCCTGCCA 59.673 50.000 9.17 0.00 34.28 4.92
1968 3255 1.680338 ATTATTCAGAACGGCCTGCC 58.320 50.000 0.00 0.00 34.28 4.85
2077 3370 5.863965 TCCATTTAATGTCATCAGCCGATA 58.136 37.500 4.15 0.00 0.00 2.92
2128 3421 3.276857 AGCATCTTGTATGCAGAGGTTG 58.723 45.455 12.12 0.00 46.77 3.77
2129 3422 3.539604 GAGCATCTTGTATGCAGAGGTT 58.460 45.455 12.12 0.00 46.77 3.50
2130 3423 3.191078 GAGCATCTTGTATGCAGAGGT 57.809 47.619 12.12 0.00 46.77 3.85
2155 3457 4.398358 TGTAGTTAGACCGAATCAGTCCTG 59.602 45.833 0.00 0.00 34.67 3.86
2259 3561 5.824904 AAAGACCATGTATTGATGTCTGC 57.175 39.130 0.16 0.00 0.00 4.26
2325 3664 7.984050 TCTGCTTCAGCTGATAATATTATAGGC 59.016 37.037 19.04 17.45 42.71 3.93
2434 3816 7.868415 CGATAACCTAGCTAGCTTAATGAAACT 59.132 37.037 24.88 0.00 0.00 2.66
2459 3841 4.336101 TCGCAAAATAATAAGTTTCGCCG 58.664 39.130 0.00 0.00 0.00 6.46
2490 3881 9.906660 CAAGAGGCAATATTGTTTAGTGTTTAA 57.093 29.630 16.61 0.00 0.00 1.52
2588 3986 6.773976 TTTCAAATGGAACCATGGTATCTC 57.226 37.500 20.12 12.38 36.68 2.75
2687 4090 5.978934 AAGCAAAATTTGTTCAGCAGAAG 57.021 34.783 7.60 0.00 33.63 2.85
2737 4155 0.794473 CCAAACCGCTCGTAAAGTCC 59.206 55.000 0.00 0.00 0.00 3.85
2762 4188 9.844790 TTAATCACAATCATACAAGCTTCTTTG 57.155 29.630 0.00 0.00 0.00 2.77
2785 4211 6.928492 ACACGTTAACCTATTCGACCTTTTAA 59.072 34.615 0.00 0.00 0.00 1.52
2808 4253 1.661617 CAGGACAAAACGACACGAACA 59.338 47.619 0.00 0.00 0.00 3.18
2830 4275 9.167311 CCTGTAAGCAGATAAAAAGAATACACT 57.833 33.333 0.00 0.00 45.28 3.55
2892 4351 7.069877 TCTAGTTTATGTTGTTACACCTGGT 57.930 36.000 0.00 0.00 37.03 4.00
2894 4353 8.373048 TGTTCTAGTTTATGTTGTTACACCTG 57.627 34.615 0.00 0.00 37.03 4.00
2940 4406 3.940319 CCTGGAGAGATATTGATGCAGG 58.060 50.000 7.74 7.74 43.51 4.85
3236 4721 9.947433 AACAAATAAATTGAACATGATGACCAT 57.053 25.926 0.00 0.00 41.85 3.55
3239 4724 9.532697 GCAAACAAATAAATTGAACATGATGAC 57.467 29.630 0.00 0.00 41.85 3.06
3252 4737 4.506886 TTCGGACCGCAAACAAATAAAT 57.493 36.364 9.66 0.00 0.00 1.40
3285 4778 7.518188 AGGTATAGGGTCCAACATAAATTCTG 58.482 38.462 0.00 0.00 0.00 3.02
3322 4839 5.293569 ACGTACCTACTATGAATTTTGCTGC 59.706 40.000 0.00 0.00 0.00 5.25
3338 4855 8.059798 AGAAATGCTTAAGTTCTACGTACCTA 57.940 34.615 4.02 0.00 41.30 3.08
3339 4856 6.932947 AGAAATGCTTAAGTTCTACGTACCT 58.067 36.000 4.02 0.00 41.30 3.08
3341 4858 8.236084 TGAAGAAATGCTTAAGTTCTACGTAC 57.764 34.615 4.02 0.00 42.23 3.67
3343 4860 7.907214 ATGAAGAAATGCTTAAGTTCTACGT 57.093 32.000 4.02 0.00 42.23 3.57
3472 5063 1.271762 ACAGTGAGCCACAATGAGCAT 60.272 47.619 14.11 0.00 45.82 3.79
3487 5079 3.345808 CGGTGGACGGCAACAGTG 61.346 66.667 0.00 0.00 39.42 3.66
3496 5088 4.408694 GAATTTAATTTCACCGGTGGACG 58.591 43.478 33.40 9.24 43.80 4.79
3676 5269 8.584157 ACACATTAAAGCTGGAAAATCATACAA 58.416 29.630 0.00 0.00 0.00 2.41
3681 5274 6.899393 AGACACATTAAAGCTGGAAAATCA 57.101 33.333 0.00 0.00 0.00 2.57
3689 5282 7.147312 TGGAAAATCAAGACACATTAAAGCTG 58.853 34.615 0.00 0.00 0.00 4.24
3702 5295 5.850557 TTGTTTCAGCTGGAAAATCAAGA 57.149 34.783 9.61 0.00 46.53 3.02
3711 5304 4.592942 AGCATCTAATTGTTTCAGCTGGA 58.407 39.130 15.13 0.46 0.00 3.86
3720 5313 7.097192 TCGACTAACTGAAGCATCTAATTGTT 58.903 34.615 0.00 0.00 0.00 2.83
3724 5317 7.043961 TGATCGACTAACTGAAGCATCTAAT 57.956 36.000 0.00 0.00 0.00 1.73
3737 5330 8.614346 ACTAGTCTTACAAGATGATCGACTAAC 58.386 37.037 6.94 0.00 37.39 2.34
3743 5336 6.378710 TCCACTAGTCTTACAAGATGATCG 57.621 41.667 0.00 0.00 37.39 3.69
3827 5421 1.007336 GTGCCTTAGACCGACGTGTG 61.007 60.000 0.00 0.00 0.00 3.82
3936 5531 6.122964 GGAGGCCAACAATAACTATTCTTCT 58.877 40.000 5.01 0.00 0.00 2.85
3968 5563 6.693315 AAAACTTTGCTTGTTAGAGTGCTA 57.307 33.333 0.00 0.00 0.00 3.49
3969 5564 5.582689 AAAACTTTGCTTGTTAGAGTGCT 57.417 34.783 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.