Multiple sequence alignment - TraesCS5A01G042800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G042800 chr5A 100.000 7842 0 0 2067 9908 38781805 38773964 0.000000e+00 14482.0
1 TraesCS5A01G042800 chr5A 100.000 1863 0 0 1 1863 38783871 38782009 0.000000e+00 3441.0
2 TraesCS5A01G042800 chr5A 83.248 2334 342 25 4511 6819 473417852 473420161 0.000000e+00 2098.0
3 TraesCS5A01G042800 chr5A 83.583 2266 291 56 4591 6821 473619771 473621990 0.000000e+00 2049.0
4 TraesCS5A01G042800 chr5A 93.358 542 28 4 9370 9908 169802590 169802054 0.000000e+00 795.0
5 TraesCS5A01G042800 chr5A 85.329 593 73 9 7071 7652 473622644 473623233 1.420000e-167 601.0
6 TraesCS5A01G042800 chr5A 89.670 455 45 2 7199 7652 473429176 473429629 6.670000e-161 579.0
7 TraesCS5A01G042800 chr5A 84.991 533 74 4 7116 7644 473459381 473459911 4.070000e-148 536.0
8 TraesCS5A01G042800 chr5A 80.740 649 96 19 8441 9067 473430312 473430953 6.960000e-131 479.0
9 TraesCS5A01G042800 chr5A 81.419 592 77 22 8193 8765 473623770 473624347 4.220000e-123 453.0
10 TraesCS5A01G042800 chr5A 79.381 582 105 13 8433 9000 473464906 473465486 7.210000e-106 396.0
11 TraesCS5A01G042800 chr5A 78.531 531 71 31 762 1263 473454538 473455054 9.660000e-80 309.0
12 TraesCS5A01G042800 chr5A 80.882 272 40 8 998 1263 473613556 473613821 4.690000e-48 204.0
13 TraesCS5A01G042800 chr5A 100.000 33 0 0 4010 4042 143575988 143575956 2.990000e-05 62.1
14 TraesCS5A01G042800 chr5D 92.578 7357 436 56 2070 9366 49153990 49146684 0.000000e+00 10460.0
15 TraesCS5A01G042800 chr5D 83.193 2487 348 40 4549 6996 370826630 370829085 0.000000e+00 2213.0
16 TraesCS5A01G042800 chr5D 83.620 2265 296 51 4591 6821 370838457 370840680 0.000000e+00 2058.0
17 TraesCS5A01G042800 chr5D 82.471 2145 299 49 4743 6823 334890597 334892728 0.000000e+00 1807.0
18 TraesCS5A01G042800 chr5D 90.860 1302 71 21 140 1398 49155899 49154603 0.000000e+00 1701.0
19 TraesCS5A01G042800 chr5D 90.330 455 43 1 7199 7652 370829173 370829627 6.620000e-166 595.0
20 TraesCS5A01G042800 chr5D 83.771 647 81 14 7027 7652 370841101 370841744 8.570000e-165 592.0
21 TraesCS5A01G042800 chr5D 91.160 362 16 10 1515 1863 49154389 49154031 2.500000e-130 477.0
22 TraesCS5A01G042800 chr5D 80.495 646 101 17 8441 9067 370830352 370830991 1.160000e-128 472.0
23 TraesCS5A01G042800 chr5D 80.064 622 85 25 8193 8789 370842259 370842866 9.200000e-115 425.0
24 TraesCS5A01G042800 chr5D 86.054 294 30 6 977 1263 370819844 370820133 1.250000e-78 305.0
25 TraesCS5A01G042800 chr5D 82.900 269 38 5 998 1262 370832408 370832672 1.660000e-57 235.0
26 TraesCS5A01G042800 chr5D 93.333 45 3 0 519 563 6167060 6167104 6.420000e-07 67.6
27 TraesCS5A01G042800 chr5D 93.333 45 3 0 519 563 6266089 6266133 6.420000e-07 67.6
28 TraesCS5A01G042800 chr5D 93.333 45 3 0 519 563 167223804 167223848 6.420000e-07 67.6
29 TraesCS5A01G042800 chr5D 100.000 33 0 0 4010 4042 389935183 389935215 2.990000e-05 62.1
30 TraesCS5A01G042800 chr5D 100.000 29 0 0 4014 4042 546566970 546566998 5.000000e-03 54.7
31 TraesCS5A01G042800 chr5B 92.037 6103 379 46 3319 9366 51862362 51856312 0.000000e+00 8479.0
32 TraesCS5A01G042800 chr5B 80.431 3710 537 107 4618 8179 440210822 440214490 0.000000e+00 2654.0
33 TraesCS5A01G042800 chr5B 91.113 1249 97 11 2070 3315 51864095 51862858 0.000000e+00 1679.0
34 TraesCS5A01G042800 chr5B 83.951 1645 236 18 4495 6125 440184822 440186452 0.000000e+00 1550.0
35 TraesCS5A01G042800 chr5B 80.829 1424 187 55 5511 6890 440227745 440229126 0.000000e+00 1038.0
36 TraesCS5A01G042800 chr5B 90.397 781 62 8 140 918 51867829 51867060 0.000000e+00 1014.0
37 TraesCS5A01G042800 chr5B 91.935 496 18 7 909 1387 51865850 51865360 0.000000e+00 675.0
38 TraesCS5A01G042800 chr5B 86.064 531 66 6 7126 7652 440234841 440235367 1.870000e-156 564.0
39 TraesCS5A01G042800 chr5B 84.369 563 72 12 6293 6840 440186675 440187236 1.130000e-148 538.0
40 TraesCS5A01G042800 chr5B 79.971 689 92 32 8192 8844 440214474 440215152 5.420000e-127 466.0
41 TraesCS5A01G042800 chr5B 91.167 317 15 3 1559 1863 51864451 51864136 1.540000e-112 418.0
42 TraesCS5A01G042800 chr5B 79.452 584 106 12 8438 9008 440192672 440193254 1.550000e-107 401.0
43 TraesCS5A01G042800 chr5B 79.181 586 89 18 8271 8840 440236066 440236634 9.400000e-100 375.0
44 TraesCS5A01G042800 chr5B 80.397 403 71 6 8458 8854 391757417 391757817 5.820000e-77 300.0
45 TraesCS5A01G042800 chr5B 83.150 273 32 8 1001 1263 440201147 440201415 4.630000e-58 237.0
46 TraesCS5A01G042800 chr5B 84.475 219 33 1 1045 1262 440220921 440221139 2.170000e-51 215.0
47 TraesCS5A01G042800 chr5B 91.912 136 10 1 1 135 51883346 51883211 1.310000e-43 189.0
48 TraesCS5A01G042800 chr5B 85.333 150 21 1 2442 2590 670368514 670368365 4.790000e-33 154.0
49 TraesCS5A01G042800 chr5B 77.959 245 34 12 9010 9239 440236805 440237044 1.740000e-27 135.0
50 TraesCS5A01G042800 chr5B 88.776 98 10 1 1437 1533 461864223 461864126 1.750000e-22 119.0
51 TraesCS5A01G042800 chr5B 90.566 53 5 0 1380 1432 51864499 51864447 4.960000e-08 71.3
52 TraesCS5A01G042800 chr1A 93.878 539 31 2 9370 9908 120000998 120000462 0.000000e+00 811.0
53 TraesCS5A01G042800 chr1A 93.321 539 36 0 9370 9908 308454017 308454555 0.000000e+00 797.0
54 TraesCS5A01G042800 chr1A 93.519 540 28 5 9374 9908 493734688 493734151 0.000000e+00 797.0
55 TraesCS5A01G042800 chr1A 92.857 546 36 3 9364 9908 499239074 499239617 0.000000e+00 789.0
56 TraesCS5A01G042800 chr1A 100.000 32 0 0 4228 4259 481212147 481212116 1.070000e-04 60.2
57 TraesCS5A01G042800 chr3A 94.019 535 30 2 9374 9908 359620198 359619666 0.000000e+00 809.0
58 TraesCS5A01G042800 chr3A 93.321 539 35 1 9370 9908 359636280 359635743 0.000000e+00 795.0
59 TraesCS5A01G042800 chr3A 97.143 35 1 0 4227 4261 625247686 625247720 1.070000e-04 60.2
60 TraesCS5A01G042800 chr7A 93.542 542 32 2 9367 9908 516823055 516823593 0.000000e+00 804.0
61 TraesCS5A01G042800 chr7A 93.173 542 36 1 9367 9908 241380646 241381186 0.000000e+00 795.0
62 TraesCS5A01G042800 chr7A 86.364 88 12 0 4304 4391 555943381 555943294 8.190000e-16 97.1
63 TraesCS5A01G042800 chr7A 89.655 58 6 0 1469 1526 8782018 8782075 3.840000e-09 75.0
64 TraesCS5A01G042800 chr7A 93.750 48 3 0 519 566 537202728 537202681 1.380000e-08 73.1
65 TraesCS5A01G042800 chr1B 86.000 150 20 1 2442 2590 666849933 666850082 1.030000e-34 159.0
66 TraesCS5A01G042800 chr1B 83.893 149 23 1 2443 2590 311627288 311627140 3.730000e-29 141.0
67 TraesCS5A01G042800 chr1B 86.232 138 7 3 1434 1560 112211783 112211919 1.340000e-28 139.0
68 TraesCS5A01G042800 chr1B 100.000 33 0 0 4229 4261 675705169 675705137 2.990000e-05 62.1
69 TraesCS5A01G042800 chr3B 83.234 167 27 1 2445 2610 464623727 464623561 1.720000e-32 152.0
70 TraesCS5A01G042800 chr3B 100.000 33 0 0 4010 4042 677734349 677734317 2.990000e-05 62.1
71 TraesCS5A01G042800 chr3D 87.302 126 15 1 2491 2615 403238727 403238602 1.040000e-29 143.0
72 TraesCS5A01G042800 chr3D 97.059 34 1 0 4009 4042 15890494 15890527 3.870000e-04 58.4
73 TraesCS5A01G042800 chr3D 100.000 29 0 0 4010 4038 375724069 375724097 5.000000e-03 54.7
74 TraesCS5A01G042800 chr6B 87.931 116 13 1 2477 2591 19451013 19451128 1.740000e-27 135.0
75 TraesCS5A01G042800 chr6B 90.789 76 7 0 4305 4380 602828620 602828545 1.760000e-17 102.0
76 TraesCS5A01G042800 chr2D 82.353 153 26 1 2439 2590 56252976 56253128 2.250000e-26 132.0
77 TraesCS5A01G042800 chr6D 86.316 95 13 0 4296 4390 122992097 122992191 4.900000e-18 104.0
78 TraesCS5A01G042800 chr6A 88.372 86 10 0 4305 4390 548408145 548408060 4.900000e-18 104.0
79 TraesCS5A01G042800 chr7B 89.024 82 9 0 4309 4390 533304509 533304590 1.760000e-17 102.0
80 TraesCS5A01G042800 chr7B 97.143 35 1 0 4227 4261 245596432 245596466 1.070000e-04 60.2
81 TraesCS5A01G042800 chr7B 94.118 34 2 0 3854 3887 607993671 607993638 1.800000e-02 52.8
82 TraesCS5A01G042800 chr2A 87.209 86 11 0 4305 4390 385002789 385002704 2.280000e-16 99.0
83 TraesCS5A01G042800 chr2B 86.207 87 12 0 4304 4390 394722950 394723036 2.950000e-15 95.3
84 TraesCS5A01G042800 chr1D 81.301 123 13 4 1449 1561 80826990 80827112 3.810000e-14 91.6
85 TraesCS5A01G042800 chr1D 92.000 50 4 0 517 566 254444894 254444845 4.960000e-08 71.3
86 TraesCS5A01G042800 chr1D 91.667 48 4 0 519 566 30128601 30128554 6.420000e-07 67.6
87 TraesCS5A01G042800 chr1D 96.875 32 0 1 4015 4046 457853759 457853729 1.800000e-02 52.8
88 TraesCS5A01G042800 chr4A 93.478 46 3 0 518 563 309480149 309480194 1.790000e-07 69.4
89 TraesCS5A01G042800 chr4B 92.857 42 1 1 4227 4268 89007800 89007761 1.070000e-04 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G042800 chr5A 38773964 38783871 9907 True 8961.500000 14482 100.000000 1 9908 2 chr5A.!!$R3 9907
1 TraesCS5A01G042800 chr5A 473417852 473420161 2309 False 2098.000000 2098 83.248000 4511 6819 1 chr5A.!!$F1 2308
2 TraesCS5A01G042800 chr5A 473619771 473624347 4576 False 1034.333333 2049 83.443667 4591 8765 3 chr5A.!!$F7 4174
3 TraesCS5A01G042800 chr5A 169802054 169802590 536 True 795.000000 795 93.358000 9370 9908 1 chr5A.!!$R2 538
4 TraesCS5A01G042800 chr5A 473459381 473459911 530 False 536.000000 536 84.991000 7116 7644 1 chr5A.!!$F3 528
5 TraesCS5A01G042800 chr5A 473429176 473430953 1777 False 529.000000 579 85.205000 7199 9067 2 chr5A.!!$F6 1868
6 TraesCS5A01G042800 chr5A 473464906 473465486 580 False 396.000000 396 79.381000 8433 9000 1 chr5A.!!$F4 567
7 TraesCS5A01G042800 chr5A 473454538 473455054 516 False 309.000000 309 78.531000 762 1263 1 chr5A.!!$F2 501
8 TraesCS5A01G042800 chr5D 49146684 49155899 9215 True 4212.666667 10460 91.532667 140 9366 3 chr5D.!!$R1 9226
9 TraesCS5A01G042800 chr5D 334890597 334892728 2131 False 1807.000000 1807 82.471000 4743 6823 1 chr5D.!!$F4 2080
10 TraesCS5A01G042800 chr5D 370838457 370842866 4409 False 1025.000000 2058 82.485000 4591 8789 3 chr5D.!!$F9 4198
11 TraesCS5A01G042800 chr5D 370826630 370832672 6042 False 878.750000 2213 84.229500 998 9067 4 chr5D.!!$F8 8069
12 TraesCS5A01G042800 chr5B 51856312 51867829 11517 True 2056.050000 8479 91.202500 140 9366 6 chr5B.!!$R4 9226
13 TraesCS5A01G042800 chr5B 440210822 440215152 4330 False 1560.000000 2654 80.201000 4618 8844 2 chr5B.!!$F7 4226
14 TraesCS5A01G042800 chr5B 440184822 440187236 2414 False 1044.000000 1550 84.160000 4495 6840 2 chr5B.!!$F6 2345
15 TraesCS5A01G042800 chr5B 440227745 440229126 1381 False 1038.000000 1038 80.829000 5511 6890 1 chr5B.!!$F5 1379
16 TraesCS5A01G042800 chr5B 440192672 440193254 582 False 401.000000 401 79.452000 8438 9008 1 chr5B.!!$F2 570
17 TraesCS5A01G042800 chr5B 440234841 440237044 2203 False 358.000000 564 81.068000 7126 9239 3 chr5B.!!$F8 2113
18 TraesCS5A01G042800 chr1A 120000462 120000998 536 True 811.000000 811 93.878000 9370 9908 1 chr1A.!!$R1 538
19 TraesCS5A01G042800 chr1A 308454017 308454555 538 False 797.000000 797 93.321000 9370 9908 1 chr1A.!!$F1 538
20 TraesCS5A01G042800 chr1A 493734151 493734688 537 True 797.000000 797 93.519000 9374 9908 1 chr1A.!!$R3 534
21 TraesCS5A01G042800 chr1A 499239074 499239617 543 False 789.000000 789 92.857000 9364 9908 1 chr1A.!!$F2 544
22 TraesCS5A01G042800 chr3A 359619666 359620198 532 True 809.000000 809 94.019000 9374 9908 1 chr3A.!!$R1 534
23 TraesCS5A01G042800 chr3A 359635743 359636280 537 True 795.000000 795 93.321000 9370 9908 1 chr3A.!!$R2 538
24 TraesCS5A01G042800 chr7A 516823055 516823593 538 False 804.000000 804 93.542000 9367 9908 1 chr7A.!!$F3 541
25 TraesCS5A01G042800 chr7A 241380646 241381186 540 False 795.000000 795 93.173000 9367 9908 1 chr7A.!!$F2 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.551377 TGTCCATGGGAGCCCCTTTA 60.551 55.000 13.02 0.00 45.70 1.85 F
1310 2582 0.109919 TGTCACGTCGTCAGGATTCG 60.110 55.000 0.00 0.00 0.00 3.34 F
1478 3623 0.178978 GAGGATTGGAGGGGATTGGC 60.179 60.000 0.00 0.00 0.00 4.52 F
2275 4529 0.108186 ATGATGGAGCTCGCGAACAA 60.108 50.000 11.33 0.00 0.00 2.83 F
3604 6353 0.951525 TACACGGCAACCAACATCCG 60.952 55.000 0.00 0.00 46.61 4.18 F
4109 6881 1.620819 CCGAGTTGCCCTATAGAGCAT 59.379 52.381 9.99 0.00 39.11 3.79 F
4381 7154 2.037902 TGCGACACTAACTTTGGATCCA 59.962 45.455 11.44 11.44 0.00 3.41 F
5884 8671 0.393077 AGCTTAGAGTTGGTGTGCGT 59.607 50.000 0.00 0.00 0.00 5.24 F
7182 10562 1.067425 GTGCATTGCATTCCAGCTTCA 60.067 47.619 15.49 0.00 41.91 3.02 F
7775 11233 0.670162 GCGTCCCAATGGAATGATGG 59.330 55.000 0.00 0.00 44.07 3.51 F
8361 12226 3.751518 ACGATTAATTGAGGGGTATGGC 58.248 45.455 9.79 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 3604 0.178978 GCCAATCCCCTCCAATCCTC 60.179 60.000 0.00 0.0 0.00 3.71 R
2252 4506 0.961753 TCGCGAGCTCCATCATACAT 59.038 50.000 3.71 0.0 0.00 2.29 R
2805 5060 1.080638 AAGTGGGGTTTGGGATGCTA 58.919 50.000 0.00 0.0 0.00 3.49 R
4085 6857 1.456145 TATAGGGCAACTCGGGCGA 60.456 57.895 0.00 0.0 0.00 5.54 R
4917 7701 0.102120 CTGAGCCGAGTCATCTGGTC 59.898 60.000 0.00 0.0 37.59 4.02 R
5011 7795 1.904771 TGGTACAATGCCTCTCCCG 59.095 57.895 0.00 0.0 31.92 5.14 R
6251 9090 0.752658 GCATTTATGGTTGGCCTCCC 59.247 55.000 3.32 4.0 35.27 4.30 R
7556 10937 2.616842 ACCTTTGTTGTACTTTGCGAGG 59.383 45.455 0.00 0.0 0.00 4.63 R
8347 12212 0.106519 GCACTGCCATACCCCTCAAT 60.107 55.000 0.00 0.0 0.00 2.57 R
8879 12841 0.601046 CTGCTCGAACTGTGAGGCAA 60.601 55.000 0.00 0.0 33.99 4.52 R
9831 13876 0.691078 GGGTGCACCATAGAGAGGGA 60.691 60.000 35.78 0.0 39.85 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.423906 GAACATAGATAGGGGAATAACAGAGA 57.576 38.462 0.00 0.00 0.00 3.10
26 27 7.784470 ACATAGATAGGGGAATAACAGAGAC 57.216 40.000 0.00 0.00 0.00 3.36
27 28 7.540183 ACATAGATAGGGGAATAACAGAGACT 58.460 38.462 0.00 0.00 0.00 3.24
28 29 7.453126 ACATAGATAGGGGAATAACAGAGACTG 59.547 40.741 0.00 0.00 37.52 3.51
30 31 6.923670 AGATAGGGGAATAACAGAGACTGTA 58.076 40.000 4.84 0.00 44.62 2.74
31 32 7.540183 AGATAGGGGAATAACAGAGACTGTAT 58.460 38.462 4.84 0.00 44.62 2.29
32 33 8.013667 AGATAGGGGAATAACAGAGACTGTATT 58.986 37.037 4.84 5.82 44.62 1.89
33 34 6.893020 AGGGGAATAACAGAGACTGTATTT 57.107 37.500 4.84 2.63 44.62 1.40
34 35 7.989947 AGGGGAATAACAGAGACTGTATTTA 57.010 36.000 4.84 0.00 44.62 1.40
35 36 8.024145 AGGGGAATAACAGAGACTGTATTTAG 57.976 38.462 4.84 0.00 44.62 1.85
36 37 7.624077 AGGGGAATAACAGAGACTGTATTTAGT 59.376 37.037 4.84 0.00 44.62 2.24
37 38 8.265764 GGGGAATAACAGAGACTGTATTTAGTT 58.734 37.037 4.84 0.00 44.62 2.24
38 39 9.099454 GGGAATAACAGAGACTGTATTTAGTTG 57.901 37.037 4.84 0.00 44.62 3.16
39 40 9.654663 GGAATAACAGAGACTGTATTTAGTTGT 57.345 33.333 4.84 0.00 44.62 3.32
41 42 9.998106 AATAACAGAGACTGTATTTAGTTGTGT 57.002 29.630 4.84 0.00 44.62 3.72
42 43 7.948278 AACAGAGACTGTATTTAGTTGTGTC 57.052 36.000 4.84 0.00 44.62 3.67
43 44 6.456501 ACAGAGACTGTATTTAGTTGTGTCC 58.543 40.000 2.43 0.00 43.46 4.02
44 45 6.041637 ACAGAGACTGTATTTAGTTGTGTCCA 59.958 38.462 2.43 0.00 43.46 4.02
45 46 7.099764 CAGAGACTGTATTTAGTTGTGTCCAT 58.900 38.462 0.00 0.00 0.00 3.41
46 47 7.063898 CAGAGACTGTATTTAGTTGTGTCCATG 59.936 40.741 0.00 0.00 0.00 3.66
47 48 6.173339 AGACTGTATTTAGTTGTGTCCATGG 58.827 40.000 4.97 4.97 0.00 3.66
48 49 5.253330 ACTGTATTTAGTTGTGTCCATGGG 58.747 41.667 13.02 0.00 0.00 4.00
49 50 5.013704 ACTGTATTTAGTTGTGTCCATGGGA 59.986 40.000 13.02 0.00 0.00 4.37
50 51 5.496556 TGTATTTAGTTGTGTCCATGGGAG 58.503 41.667 13.02 0.00 29.39 4.30
51 52 2.489938 TTAGTTGTGTCCATGGGAGC 57.510 50.000 13.02 3.37 29.39 4.70
52 53 0.618458 TAGTTGTGTCCATGGGAGCC 59.382 55.000 13.02 0.00 29.39 4.70
53 54 1.678970 GTTGTGTCCATGGGAGCCC 60.679 63.158 13.02 0.00 29.39 5.19
54 55 2.917897 TTGTGTCCATGGGAGCCCC 61.918 63.158 13.02 3.42 45.71 5.80
55 56 3.017581 GTGTCCATGGGAGCCCCT 61.018 66.667 13.02 0.00 45.70 4.79
56 57 2.204291 TGTCCATGGGAGCCCCTT 60.204 61.111 13.02 2.80 45.70 3.95
57 58 1.856873 TGTCCATGGGAGCCCCTTT 60.857 57.895 13.02 0.00 45.70 3.11
58 59 0.551377 TGTCCATGGGAGCCCCTTTA 60.551 55.000 13.02 0.00 45.70 1.85
59 60 0.629058 GTCCATGGGAGCCCCTTTAA 59.371 55.000 13.02 0.00 45.70 1.52
60 61 1.217942 GTCCATGGGAGCCCCTTTAAT 59.782 52.381 13.02 0.00 45.70 1.40
61 62 1.499007 TCCATGGGAGCCCCTTTAATC 59.501 52.381 13.02 0.00 45.70 1.75
62 63 1.609208 CATGGGAGCCCCTTTAATCG 58.391 55.000 11.10 0.00 45.70 3.34
63 64 1.133792 CATGGGAGCCCCTTTAATCGT 60.134 52.381 11.10 0.00 45.70 3.73
64 65 0.996583 TGGGAGCCCCTTTAATCGTT 59.003 50.000 11.10 0.00 45.70 3.85
65 66 1.340600 TGGGAGCCCCTTTAATCGTTG 60.341 52.381 11.10 0.00 45.70 4.10
66 67 1.340697 GGGAGCCCCTTTAATCGTTGT 60.341 52.381 3.16 0.00 41.34 3.32
67 68 2.443416 GGAGCCCCTTTAATCGTTGTT 58.557 47.619 0.00 0.00 0.00 2.83
68 69 2.163613 GGAGCCCCTTTAATCGTTGTTG 59.836 50.000 0.00 0.00 0.00 3.33
69 70 1.544246 AGCCCCTTTAATCGTTGTTGC 59.456 47.619 0.00 0.00 0.00 4.17
70 71 1.731098 GCCCCTTTAATCGTTGTTGCG 60.731 52.381 0.00 0.00 0.00 4.85
71 72 1.538075 CCCCTTTAATCGTTGTTGCGT 59.462 47.619 0.00 0.00 0.00 5.24
72 73 2.413634 CCCCTTTAATCGTTGTTGCGTC 60.414 50.000 0.00 0.00 0.00 5.19
73 74 2.482721 CCCTTTAATCGTTGTTGCGTCT 59.517 45.455 0.00 0.00 0.00 4.18
74 75 3.680937 CCCTTTAATCGTTGTTGCGTCTA 59.319 43.478 0.00 0.00 0.00 2.59
75 76 4.331717 CCCTTTAATCGTTGTTGCGTCTAT 59.668 41.667 0.00 0.00 0.00 1.98
76 77 5.490213 CCTTTAATCGTTGTTGCGTCTATC 58.510 41.667 0.00 0.00 0.00 2.08
77 78 5.459110 TTTAATCGTTGTTGCGTCTATCC 57.541 39.130 0.00 0.00 0.00 2.59
78 79 2.665649 ATCGTTGTTGCGTCTATCCA 57.334 45.000 0.00 0.00 0.00 3.41
79 80 1.990799 TCGTTGTTGCGTCTATCCAG 58.009 50.000 0.00 0.00 0.00 3.86
80 81 1.271379 TCGTTGTTGCGTCTATCCAGT 59.729 47.619 0.00 0.00 0.00 4.00
81 82 2.488937 TCGTTGTTGCGTCTATCCAGTA 59.511 45.455 0.00 0.00 0.00 2.74
82 83 2.852413 CGTTGTTGCGTCTATCCAGTAG 59.148 50.000 0.00 0.00 0.00 2.57
83 84 3.187700 GTTGTTGCGTCTATCCAGTAGG 58.812 50.000 0.00 0.00 0.00 3.18
84 85 1.754803 TGTTGCGTCTATCCAGTAGGG 59.245 52.381 0.00 0.00 34.83 3.53
94 95 1.938585 TCCAGTAGGGAGGAACACTG 58.061 55.000 0.00 0.00 42.15 3.66
96 97 1.645710 CAGTAGGGAGGAACACTGGT 58.354 55.000 0.00 0.00 35.77 4.00
97 98 1.276421 CAGTAGGGAGGAACACTGGTG 59.724 57.143 0.00 0.00 35.77 4.17
98 99 0.613777 GTAGGGAGGAACACTGGTGG 59.386 60.000 5.70 0.00 32.74 4.61
99 100 1.198759 TAGGGAGGAACACTGGTGGC 61.199 60.000 5.70 0.00 32.74 5.01
100 101 2.358737 GGAGGAACACTGGTGGCG 60.359 66.667 5.70 0.00 34.19 5.69
101 102 2.426023 GAGGAACACTGGTGGCGT 59.574 61.111 5.70 0.00 34.19 5.68
102 103 1.961277 GAGGAACACTGGTGGCGTG 60.961 63.158 5.70 0.00 38.32 5.34
103 104 3.660111 GGAACACTGGTGGCGTGC 61.660 66.667 5.70 0.00 35.84 5.34
104 105 2.899838 GAACACTGGTGGCGTGCA 60.900 61.111 5.70 0.00 35.84 4.57
105 106 2.203337 AACACTGGTGGCGTGCAT 60.203 55.556 5.70 0.00 35.84 3.96
106 107 2.462255 GAACACTGGTGGCGTGCATG 62.462 60.000 0.09 0.09 35.84 4.06
107 108 2.669229 CACTGGTGGCGTGCATGA 60.669 61.111 10.93 0.00 0.00 3.07
108 109 2.669569 ACTGGTGGCGTGCATGAC 60.670 61.111 10.93 7.69 0.00 3.06
109 110 2.669229 CTGGTGGCGTGCATGACA 60.669 61.111 11.40 11.40 0.00 3.58
119 120 1.967762 GTGCATGACACGGAATTGTG 58.032 50.000 0.00 0.00 45.41 3.33
120 121 0.880441 TGCATGACACGGAATTGTGG 59.120 50.000 0.00 0.00 44.21 4.17
121 122 0.881118 GCATGACACGGAATTGTGGT 59.119 50.000 0.00 0.00 44.21 4.16
122 123 2.080693 GCATGACACGGAATTGTGGTA 58.919 47.619 0.00 0.00 44.21 3.25
123 124 2.095853 GCATGACACGGAATTGTGGTAG 59.904 50.000 0.00 0.00 44.21 3.18
124 125 3.334691 CATGACACGGAATTGTGGTAGT 58.665 45.455 1.48 0.00 44.21 2.73
125 126 4.500127 CATGACACGGAATTGTGGTAGTA 58.500 43.478 1.48 0.00 44.21 1.82
126 127 4.811969 TGACACGGAATTGTGGTAGTAT 57.188 40.909 1.48 0.00 44.21 2.12
127 128 4.500127 TGACACGGAATTGTGGTAGTATG 58.500 43.478 1.48 0.00 44.21 2.39
128 129 3.267483 ACACGGAATTGTGGTAGTATGC 58.733 45.455 1.48 0.00 44.21 3.14
129 130 3.266636 CACGGAATTGTGGTAGTATGCA 58.733 45.455 0.00 0.00 36.20 3.96
130 131 3.063452 CACGGAATTGTGGTAGTATGCAC 59.937 47.826 0.00 0.00 36.20 4.57
131 132 3.266636 CGGAATTGTGGTAGTATGCACA 58.733 45.455 0.00 0.00 0.00 4.57
132 133 3.876914 CGGAATTGTGGTAGTATGCACAT 59.123 43.478 0.00 0.00 0.00 3.21
133 134 5.053811 CGGAATTGTGGTAGTATGCACATA 58.946 41.667 0.00 0.00 0.00 2.29
134 135 5.700832 CGGAATTGTGGTAGTATGCACATAT 59.299 40.000 0.00 0.00 0.00 1.78
135 136 6.128553 CGGAATTGTGGTAGTATGCACATATC 60.129 42.308 0.00 0.00 0.00 1.63
136 137 6.710295 GGAATTGTGGTAGTATGCACATATCA 59.290 38.462 0.00 0.00 0.00 2.15
137 138 7.391554 GGAATTGTGGTAGTATGCACATATCAT 59.608 37.037 0.00 0.00 0.00 2.45
138 139 8.696043 AATTGTGGTAGTATGCACATATCATT 57.304 30.769 0.00 0.00 0.00 2.57
142 143 7.228507 TGTGGTAGTATGCACATATCATTTTCC 59.771 37.037 0.00 0.00 0.00 3.13
205 206 7.174253 AGCTCTCTCTCGAATCGATACTTTTAT 59.826 37.037 5.59 0.00 34.61 1.40
231 232 7.517614 TCAAAAATGCTACAACTCAACCATA 57.482 32.000 0.00 0.00 0.00 2.74
244 245 4.339247 ACTCAACCATATGCATTTGTAGGC 59.661 41.667 14.86 0.00 0.00 3.93
255 256 1.164411 TTTGTAGGCCATCAGTTGCG 58.836 50.000 5.01 0.00 0.00 4.85
347 350 2.045926 CGTGGGCCCCTCTCAAAG 60.046 66.667 22.27 0.00 0.00 2.77
428 443 3.114616 CTGCCTCACCAAGCGTCG 61.115 66.667 0.00 0.00 0.00 5.12
434 449 3.403057 CACCAAGCGTCGTGTCCG 61.403 66.667 0.00 0.00 0.00 4.79
450 467 2.565391 TGTCCGATGTGTGTGAAGGTAT 59.435 45.455 0.00 0.00 0.00 2.73
457 474 2.494471 TGTGTGTGAAGGTATACGGGAG 59.506 50.000 0.00 0.00 0.00 4.30
492 510 2.718073 ATCACACGCGTCTACCCCC 61.718 63.158 9.86 0.00 0.00 5.40
493 511 4.789075 CACACGCGTCTACCCCCG 62.789 72.222 9.86 0.00 0.00 5.73
517 535 5.130350 CAAGGTCAGGTTCAAGGTTCTTTA 58.870 41.667 0.00 0.00 0.00 1.85
557 575 9.887406 ACGTTTATTTTTCAAGTGATTCGTATT 57.113 25.926 0.00 0.00 0.00 1.89
664 682 1.278413 AGCTCTCACATGACTGCACAT 59.722 47.619 0.00 0.00 0.00 3.21
667 685 4.343239 AGCTCTCACATGACTGCACATATA 59.657 41.667 0.00 0.00 0.00 0.86
685 703 9.798885 GCACATATATAAAAAGATCACTCGTTC 57.201 33.333 0.00 0.00 0.00 3.95
690 708 1.674611 AAAGATCACTCGTTCGCGCG 61.675 55.000 26.76 26.76 41.05 6.86
697 715 3.609422 CTCGTTCGCGCGGACAAAC 62.609 63.158 37.62 27.70 41.05 2.93
776 794 3.181484 CGTACCGTGTATCTTTGATCCCA 60.181 47.826 0.00 0.00 0.00 4.37
1081 2353 1.388065 CCAGAACACCACCGGCAAAA 61.388 55.000 0.00 0.00 0.00 2.44
1262 2534 2.876368 AAGGCCGCATCAGCAGGTAC 62.876 60.000 0.00 0.00 42.27 3.34
1263 2535 2.125147 GCCGCATCAGCAGGTACA 60.125 61.111 0.00 0.00 42.27 2.90
1264 2536 1.524621 GCCGCATCAGCAGGTACAT 60.525 57.895 0.00 0.00 42.27 2.29
1265 2537 0.249868 GCCGCATCAGCAGGTACATA 60.250 55.000 0.00 0.00 42.27 2.29
1269 2541 3.309388 CGCATCAGCAGGTACATAGTAC 58.691 50.000 0.00 0.00 42.27 2.73
1310 2582 0.109919 TGTCACGTCGTCAGGATTCG 60.110 55.000 0.00 0.00 0.00 3.34
1376 2655 7.781324 AAAAATTGGCCTAAGAAAGAGATCA 57.219 32.000 3.32 0.00 0.00 2.92
1425 3570 9.775539 AATCTAATTGATCAGGACTAGCCTATA 57.224 33.333 5.53 0.00 38.74 1.31
1440 3585 4.642466 GCCTATATCCTAAGGGCTTGTT 57.358 45.455 0.00 0.00 39.68 2.83
1441 3586 4.580868 GCCTATATCCTAAGGGCTTGTTC 58.419 47.826 0.00 0.00 39.68 3.18
1443 3588 3.771577 ATATCCTAAGGGCTTGTTCGG 57.228 47.619 0.00 0.00 0.00 4.30
1444 3589 1.286248 ATCCTAAGGGCTTGTTCGGT 58.714 50.000 0.00 0.00 0.00 4.69
1445 3590 0.611714 TCCTAAGGGCTTGTTCGGTC 59.388 55.000 0.00 0.00 0.00 4.79
1446 3591 0.323629 CCTAAGGGCTTGTTCGGTCA 59.676 55.000 0.00 0.00 0.00 4.02
1448 3593 1.002087 CTAAGGGCTTGTTCGGTCACT 59.998 52.381 0.00 0.00 0.00 3.41
1449 3594 0.250338 AAGGGCTTGTTCGGTCACTC 60.250 55.000 0.00 0.00 0.00 3.51
1451 3596 1.371558 GGCTTGTTCGGTCACTCCT 59.628 57.895 0.00 0.00 0.00 3.69
1453 3598 0.318762 GCTTGTTCGGTCACTCCTCT 59.681 55.000 0.00 0.00 0.00 3.69
1454 3599 1.670380 GCTTGTTCGGTCACTCCTCTC 60.670 57.143 0.00 0.00 0.00 3.20
1455 3600 0.966920 TTGTTCGGTCACTCCTCTCC 59.033 55.000 0.00 0.00 0.00 3.71
1458 3603 2.045242 CGGTCACTCCTCTCCCGA 60.045 66.667 0.00 0.00 41.08 5.14
1459 3604 2.115911 CGGTCACTCCTCTCCCGAG 61.116 68.421 0.00 0.00 41.08 4.63
1460 3605 1.303615 GGTCACTCCTCTCCCGAGA 59.696 63.158 0.00 0.00 39.74 4.04
1476 3621 1.071385 CGAGAGGATTGGAGGGGATTG 59.929 57.143 0.00 0.00 0.00 2.67
1478 3623 0.178978 GAGGATTGGAGGGGATTGGC 60.179 60.000 0.00 0.00 0.00 4.52
1479 3624 1.529244 GGATTGGAGGGGATTGGCG 60.529 63.158 0.00 0.00 0.00 5.69
1480 3625 1.227383 GATTGGAGGGGATTGGCGT 59.773 57.895 0.00 0.00 0.00 5.68
1481 3626 1.076777 ATTGGAGGGGATTGGCGTG 60.077 57.895 0.00 0.00 0.00 5.34
1482 3627 2.572333 ATTGGAGGGGATTGGCGTGG 62.572 60.000 0.00 0.00 0.00 4.94
1484 3629 2.757124 GGAGGGGATTGGCGTGGAT 61.757 63.158 0.00 0.00 0.00 3.41
1485 3630 1.227383 GAGGGGATTGGCGTGGATT 59.773 57.895 0.00 0.00 0.00 3.01
1486 3631 1.076777 AGGGGATTGGCGTGGATTG 60.077 57.895 0.00 0.00 0.00 2.67
1489 3634 1.077068 GGATTGGCGTGGATTGGGA 60.077 57.895 0.00 0.00 0.00 4.37
1491 3636 1.714899 GATTGGCGTGGATTGGGACG 61.715 60.000 0.00 0.00 38.63 4.79
1492 3637 2.478335 ATTGGCGTGGATTGGGACGT 62.478 55.000 0.00 0.00 37.89 4.34
1493 3638 1.828461 TTGGCGTGGATTGGGACGTA 61.828 55.000 0.00 0.00 37.89 3.57
1495 3640 0.463116 GGCGTGGATTGGGACGTATT 60.463 55.000 0.00 0.00 37.89 1.89
1496 3641 1.375551 GCGTGGATTGGGACGTATTT 58.624 50.000 0.00 0.00 37.89 1.40
1497 3642 1.741145 GCGTGGATTGGGACGTATTTT 59.259 47.619 0.00 0.00 37.89 1.82
1498 3643 2.477189 GCGTGGATTGGGACGTATTTTG 60.477 50.000 0.00 0.00 37.89 2.44
1499 3644 3.004171 CGTGGATTGGGACGTATTTTGA 58.996 45.455 0.00 0.00 0.00 2.69
1504 3735 5.644636 TGGATTGGGACGTATTTTGACTTAC 59.355 40.000 0.00 0.00 0.00 2.34
1520 3751 6.208840 TGACTTACAAGGGGTTTAAATCCT 57.791 37.500 17.04 11.57 0.00 3.24
1521 3752 6.243148 TGACTTACAAGGGGTTTAAATCCTC 58.757 40.000 17.04 7.87 0.00 3.71
1522 3753 6.045106 TGACTTACAAGGGGTTTAAATCCTCT 59.955 38.462 17.04 9.94 37.38 3.69
1527 3758 6.322931 ACAAGGGGTTTAAATCCTCTTCAAT 58.677 36.000 17.04 5.02 43.11 2.57
1530 3761 5.016245 AGGGGTTTAAATCCTCTTCAATCCA 59.984 40.000 17.04 0.00 30.63 3.41
1553 3794 1.439679 GGATCCACACTCAACCGAAC 58.560 55.000 6.95 0.00 0.00 3.95
1556 3797 2.631160 TCCACACTCAACCGAACAAT 57.369 45.000 0.00 0.00 0.00 2.71
1580 3821 5.357878 TGCCTAAGGATAAATTGCTTGACTG 59.642 40.000 0.00 0.00 36.56 3.51
1621 3862 3.677190 AGACGCTCATTCTAGTGTACG 57.323 47.619 0.00 0.00 40.22 3.67
1626 3867 3.556513 GCTCATTCTAGTGTACGGATCG 58.443 50.000 0.00 0.00 0.00 3.69
1653 3894 2.962125 TCATGCGCCTCGTTAAAGTAA 58.038 42.857 4.18 0.00 0.00 2.24
1743 3995 2.787473 TGCCTTTCGGATGTCAAGAT 57.213 45.000 0.00 0.00 0.00 2.40
1771 4024 0.939577 ACGATGCATCATCCGCGTAC 60.940 55.000 25.70 0.00 37.57 3.67
1779 4033 4.157840 TGCATCATCCGCGTACTATAGAAT 59.842 41.667 6.78 0.00 0.00 2.40
1800 4054 1.349026 AGATAATCCGCCATCCACCAG 59.651 52.381 0.00 0.00 0.00 4.00
1845 4099 1.153667 CCGCTGACTTGGCTCTCTC 60.154 63.158 0.00 0.00 0.00 3.20
2102 4356 8.292444 TGTGGCTCTAAATTATTGCTAACATT 57.708 30.769 0.00 0.00 0.00 2.71
2118 4372 1.331214 CATTGGTGCCAACACTTCCT 58.669 50.000 5.72 0.00 46.57 3.36
2124 4378 0.181587 TGCCAACACTTCCTTCGGAA 59.818 50.000 0.00 0.00 39.66 4.30
2126 4380 1.679153 GCCAACACTTCCTTCGGAAAA 59.321 47.619 0.00 0.00 41.54 2.29
2127 4381 2.287608 GCCAACACTTCCTTCGGAAAAG 60.288 50.000 1.57 1.57 41.54 2.27
2186 4440 2.191400 CCTTTCATCTGGAGGGTCTGA 58.809 52.381 0.00 0.00 0.00 3.27
2214 4468 9.140286 GAAGAAAAGGTCACTTAAATTTATGGC 57.860 33.333 13.81 5.66 35.41 4.40
2217 4471 5.560966 AGGTCACTTAAATTTATGGCACG 57.439 39.130 13.81 0.00 0.00 5.34
2252 4506 7.847711 TCAATTTTAAAAATCACTCCTCCCA 57.152 32.000 4.44 0.00 0.00 4.37
2254 4508 8.313292 TCAATTTTAAAAATCACTCCTCCCATG 58.687 33.333 4.44 0.00 0.00 3.66
2272 4526 0.744281 TGTATGATGGAGCTCGCGAA 59.256 50.000 11.33 0.00 0.00 4.70
2275 4529 0.108186 ATGATGGAGCTCGCGAACAA 60.108 50.000 11.33 0.00 0.00 2.83
2315 4569 8.924511 AGAATTTCTCCAAGAATGTTTCTACA 57.075 30.769 0.00 0.00 39.61 2.74
2362 4616 1.474077 GAACCATGTGATCAACAGCCC 59.526 52.381 0.00 0.00 43.64 5.19
2386 4640 8.023128 CCCGATTAATATTCTATTTGTTGCCAG 58.977 37.037 0.00 0.00 0.00 4.85
2409 4663 7.360101 CCAGTTTAGTGAATACTTTGAACCTCG 60.360 40.741 0.00 0.00 38.36 4.63
2430 4684 3.716601 GTGTTTAGCAGGCAAATGTGTT 58.283 40.909 0.00 0.00 0.00 3.32
2433 4687 4.119136 GTTTAGCAGGCAAATGTGTTTGT 58.881 39.130 3.23 0.00 45.14 2.83
2452 4706 7.386848 GTGTTTGTAGTGTTGAGAGCCTAATTA 59.613 37.037 0.00 0.00 0.00 1.40
2455 4709 6.864342 TGTAGTGTTGAGAGCCTAATTAGTC 58.136 40.000 11.50 0.00 0.00 2.59
2460 4714 5.480422 TGTTGAGAGCCTAATTAGTCTGACA 59.520 40.000 10.88 11.33 0.00 3.58
2616 4871 2.636830 ACCAATCAGCCTCTGAATTCG 58.363 47.619 0.04 0.00 44.04 3.34
2619 4874 1.661341 ATCAGCCTCTGAATTCGCAC 58.339 50.000 0.04 0.00 44.04 5.34
2637 4892 2.993220 GCACGGCCTCTTTAAATTTTGG 59.007 45.455 0.00 0.00 0.00 3.28
2642 4897 4.560513 CGGCCTCTTTAAATTTTGGAAGCA 60.561 41.667 0.00 0.00 0.00 3.91
2644 4899 5.409520 GGCCTCTTTAAATTTTGGAAGCAAG 59.590 40.000 0.00 0.00 0.00 4.01
2704 4959 4.891168 TCACTGCTATGAAATGCATGGAAT 59.109 37.500 0.00 0.00 37.65 3.01
2745 5000 8.589701 ACTTTTATTACCTCCCAAAATACCTG 57.410 34.615 0.00 0.00 0.00 4.00
2746 5001 7.618117 ACTTTTATTACCTCCCAAAATACCTGG 59.382 37.037 0.00 0.00 0.00 4.45
2747 5002 6.661740 TTATTACCTCCCAAAATACCTGGT 57.338 37.500 4.05 4.05 31.45 4.00
2748 5003 7.768324 TTATTACCTCCCAAAATACCTGGTA 57.232 36.000 9.36 9.36 31.45 3.25
2759 5014 1.350071 TACCTGGTAAAACTCGGCCA 58.650 50.000 3.54 0.00 0.00 5.36
2792 5047 3.951680 CGGTCCAAGGGCTTTATTATGTT 59.048 43.478 0.00 0.00 0.00 2.71
2805 5060 9.732130 GGCTTTATTATGTTCTATCCAAGAGAT 57.268 33.333 0.00 0.00 39.15 2.75
2838 5093 2.242043 CCCACTTTTCATGCAAGGAGT 58.758 47.619 0.00 0.00 0.00 3.85
2840 5095 3.441572 CCCACTTTTCATGCAAGGAGTAG 59.558 47.826 0.00 0.00 0.00 2.57
2862 5117 7.836183 AGTAGTGAGGAATTTATTTTCTGCCAT 59.164 33.333 0.00 0.00 0.00 4.40
2877 5132 2.229784 CTGCCATGAAAAGTTGAGGGAC 59.770 50.000 0.00 0.00 0.00 4.46
2883 5138 5.945784 CCATGAAAAGTTGAGGGACATCTTA 59.054 40.000 0.00 0.00 37.50 2.10
2894 5149 2.755103 GGGACATCTTACCCAAAAGCTG 59.245 50.000 0.00 0.00 44.96 4.24
2927 5182 7.495606 TCATAATATTGTTGTGCTCAGACGAAT 59.504 33.333 0.00 0.00 0.00 3.34
2935 5190 3.002246 TGTGCTCAGACGAATCAAACAAC 59.998 43.478 0.00 0.00 0.00 3.32
2945 5200 6.373495 AGACGAATCAAACAACCCCTTATAAC 59.627 38.462 0.00 0.00 0.00 1.89
2950 5205 7.849322 ATCAAACAACCCCTTATAACAGTTT 57.151 32.000 0.00 0.00 0.00 2.66
2961 5216 8.621286 CCCCTTATAACAGTTTGTGATGTTATC 58.379 37.037 12.43 0.00 45.11 1.75
2970 5225 9.071276 ACAGTTTGTGATGTTATCTTTGAATCT 57.929 29.630 0.00 0.00 0.00 2.40
2978 5233 9.049523 TGATGTTATCTTTGAATCTAGCATCAC 57.950 33.333 0.00 0.00 37.09 3.06
2980 5235 8.654230 TGTTATCTTTGAATCTAGCATCACTC 57.346 34.615 0.00 0.00 0.00 3.51
3009 5264 6.378280 ACCGAGCCATCATCTCTTTTTAATTT 59.622 34.615 0.00 0.00 0.00 1.82
3036 5291 8.945195 AAAATATGATATTCCTGATGCTTCCA 57.055 30.769 0.00 0.00 0.00 3.53
3069 5324 6.551601 TGGGAATAGTTGAGAGATCTTAGACC 59.448 42.308 0.00 0.00 0.00 3.85
3071 5326 7.070074 GGGAATAGTTGAGAGATCTTAGACCAA 59.930 40.741 0.00 0.00 0.00 3.67
3078 5333 6.475504 TGAGAGATCTTAGACCAAATGCAAA 58.524 36.000 0.00 0.00 0.00 3.68
3090 5345 8.851541 AGACCAAATGCAAAATGTATGAAAAT 57.148 26.923 0.00 0.00 0.00 1.82
3093 5348 9.233649 ACCAAATGCAAAATGTATGAAAATCAT 57.766 25.926 0.00 0.00 40.72 2.45
3169 5425 6.828785 ACCCCATTCTTGAGTGACATATTAAC 59.171 38.462 0.00 0.00 0.00 2.01
3180 5436 9.031537 TGAGTGACATATTAACTTCTCCTAACA 57.968 33.333 0.00 0.00 0.00 2.41
3182 5438 8.478877 AGTGACATATTAACTTCTCCTAACAGG 58.521 37.037 0.00 0.00 36.46 4.00
3262 5518 3.331478 AGCTCTCCACACTCTCAATTG 57.669 47.619 0.00 0.00 0.00 2.32
3273 5529 7.177216 TCCACACTCTCAATTGATAAGCAAAAT 59.823 33.333 8.96 0.00 40.48 1.82
3274 5530 7.816031 CCACACTCTCAATTGATAAGCAAAATT 59.184 33.333 8.96 0.00 40.48 1.82
3300 5557 5.763204 AGAACCTCATCGTTGTTAATGTGTT 59.237 36.000 0.00 0.00 0.00 3.32
3333 6082 6.016276 ACATGTATTGAAAACCTCCACAAGTC 60.016 38.462 0.00 0.00 0.00 3.01
3398 6147 6.219417 TGGAAAAACATATGGCATACTTGG 57.781 37.500 9.83 2.79 0.00 3.61
3604 6353 0.951525 TACACGGCAACCAACATCCG 60.952 55.000 0.00 0.00 46.61 4.18
3621 6370 6.045072 ACATCCGTAACAATCTAGAACCAA 57.955 37.500 0.00 0.00 0.00 3.67
3674 6423 8.289939 TGAGTTCTTTCTACCTATGTAACGAT 57.710 34.615 0.00 0.00 0.00 3.73
3682 6431 9.472361 TTTCTACCTATGTAACGATATGAAAGC 57.528 33.333 0.00 0.00 0.00 3.51
3695 6444 6.308766 ACGATATGAAAGCTTTGCATTTTCAC 59.691 34.615 18.30 0.00 41.85 3.18
3733 6482 7.159372 ACGAAAGGAGTACATTTTACTCATGT 58.841 34.615 11.14 0.45 44.18 3.21
3741 6490 7.464358 AGTACATTTTACTCATGTCATTTCGC 58.536 34.615 0.00 0.00 36.28 4.70
3751 6500 6.072508 ACTCATGTCATTTCGCATAAGTTTGT 60.073 34.615 0.00 0.00 0.00 2.83
3779 6528 8.749026 ATAGTTAGAATACCTCAGAAACTCGA 57.251 34.615 0.00 0.00 30.73 4.04
3793 6542 4.220821 AGAAACTCGACTCTGGCATTTCTA 59.779 41.667 6.66 0.00 34.14 2.10
3810 6559 4.447138 TTCTAATTGGGCGGGTTCATAT 57.553 40.909 0.00 0.00 0.00 1.78
3812 6561 4.394729 TCTAATTGGGCGGGTTCATATTC 58.605 43.478 0.00 0.00 0.00 1.75
3826 6575 7.169982 CGGGTTCATATTCTTGACTTGTATCTC 59.830 40.741 0.00 0.00 0.00 2.75
3843 6592 9.507280 CTTGTATCTCGCATTTTGAATACAATT 57.493 29.630 6.29 0.00 34.22 2.32
4006 6765 9.913310 TTCACTATGGATTGATTTGGTATTGTA 57.087 29.630 0.00 0.00 0.00 2.41
4065 6837 3.993535 CAGGCTTTCACCCTGCTC 58.006 61.111 0.00 0.00 42.98 4.26
4083 6855 9.722317 ACCCTGCTCTATAGATATAGCTAAATT 57.278 33.333 2.11 0.00 36.47 1.82
4090 6862 8.630917 TCTATAGATATAGCTAAATTGTCGCCC 58.369 37.037 1.10 0.00 36.47 6.13
4102 6874 2.762459 TCGCCCGAGTTGCCCTAT 60.762 61.111 0.00 0.00 0.00 2.57
4109 6881 1.620819 CCGAGTTGCCCTATAGAGCAT 59.379 52.381 9.99 0.00 39.11 3.79
4115 6887 3.275848 TGCCCTATAGAGCATAAGGGT 57.724 47.619 4.60 0.00 38.75 4.34
4127 6899 4.521146 AGCATAAGGGTGACATTGAAGAG 58.479 43.478 0.00 0.00 35.09 2.85
4142 6914 6.769822 ACATTGAAGAGTGACATCTCAAACTT 59.230 34.615 7.49 0.00 36.97 2.66
4179 6952 8.564574 GCTTACGAATATGGAATGTATTTTGGA 58.435 33.333 0.00 0.00 0.00 3.53
4278 7051 4.032960 AGCATCAACCAAGTCCATACAA 57.967 40.909 0.00 0.00 0.00 2.41
4329 7102 6.534634 ACTACCTTTGATCCATAATAGGTGC 58.465 40.000 0.00 0.00 36.70 5.01
4331 7104 4.167892 ACCTTTGATCCATAATAGGTGCCA 59.832 41.667 0.00 0.00 34.84 4.92
4339 7112 4.704540 TCCATAATAGGTGCCACAGTTTTG 59.295 41.667 0.00 0.00 0.00 2.44
4350 7123 3.292460 CCACAGTTTTGAACTAACCCCA 58.708 45.455 0.00 0.00 40.46 4.96
4371 7144 4.531659 AGTTCAAAACTGCGACACTAAC 57.468 40.909 0.00 0.00 41.01 2.34
4381 7154 2.037902 TGCGACACTAACTTTGGATCCA 59.962 45.455 11.44 11.44 0.00 3.41
4393 7166 4.226168 ACTTTGGATCCAAGGGAGTAAGAG 59.774 45.833 32.84 22.92 37.34 2.85
4456 7229 5.836024 ATGTGGAAAAACAGTAGGGTCTA 57.164 39.130 0.00 0.00 32.52 2.59
4457 7230 5.223449 TGTGGAAAAACAGTAGGGTCTAG 57.777 43.478 0.00 0.00 0.00 2.43
4476 7249 5.875359 GTCTAGTTCCCTATTGTGTTTCCTG 59.125 44.000 0.00 0.00 0.00 3.86
4494 7267 9.354673 TGTTTCCTGATAAGAGTTCAGATTTTT 57.645 29.630 2.36 0.00 42.63 1.94
4536 7309 7.962373 TGTTTGTATTGTCAAATATCAGCTTCG 59.038 33.333 0.00 0.00 39.09 3.79
4540 7313 7.762159 TGTATTGTCAAATATCAGCTTCGTGTA 59.238 33.333 0.00 0.00 31.03 2.90
4692 7468 8.981724 TGATTATGTTGTTGAGTACTACAGAC 57.018 34.615 0.00 0.54 43.82 3.51
4783 7567 5.244626 AGAGAATTACAAAGTGCAAGCCATT 59.755 36.000 0.00 0.00 0.00 3.16
4900 7684 4.342378 TCTCTCACTTGTGATAGTATGCCC 59.658 45.833 13.36 0.00 0.00 5.36
4917 7701 3.006940 TGCCCTATTTTGTACGAGCAAG 58.993 45.455 0.00 0.00 0.00 4.01
4987 7771 4.284490 GCATATGGATGGAGAGAAGTGGTA 59.716 45.833 4.56 0.00 33.26 3.25
5011 7795 6.976088 AGCAGTATATGATGACACTGACTAC 58.024 40.000 5.43 0.00 40.67 2.73
5053 7837 3.316308 ACCTCACTGATGCACTTCAAAAC 59.684 43.478 0.00 0.00 0.00 2.43
5077 7861 4.118093 TGATGTTCGTGTTCCATATCGT 57.882 40.909 0.00 0.00 0.00 3.73
5478 8262 3.058160 GGCATTGGCACGAGCAGT 61.058 61.111 7.26 0.00 44.61 4.40
5541 8325 6.432783 CCATTGTCCACTAAAAACTCCACATA 59.567 38.462 0.00 0.00 0.00 2.29
5657 8441 9.787435 ACCTTACAGATAGACAACAACATAAAA 57.213 29.630 0.00 0.00 0.00 1.52
5710 8494 4.263506 GGAAGAGGTTGGAGAGAAATTGGA 60.264 45.833 0.00 0.00 0.00 3.53
5884 8671 0.393077 AGCTTAGAGTTGGTGTGCGT 59.607 50.000 0.00 0.00 0.00 5.24
5944 8731 6.208644 AGATCCTGTCAAAAATGAAACAACG 58.791 36.000 0.00 0.00 0.00 4.10
6287 9173 8.394121 CCATAAATGCTCACTCTAGTTTTCTTC 58.606 37.037 0.00 0.00 0.00 2.87
6297 9190 4.142038 TCTAGTTTTCTTCCCCAAAGCAC 58.858 43.478 0.00 0.00 34.76 4.40
6503 9417 5.392767 ACTTCACTGTACCATACACAGAG 57.607 43.478 9.33 1.90 45.10 3.35
6620 9534 7.234384 GCAGCATCGTATTATTTATGTACACC 58.766 38.462 0.00 0.00 0.00 4.16
6925 10040 7.810766 TCAACAACACAAAAACTTGATCTTC 57.189 32.000 0.00 0.00 0.00 2.87
6967 10082 9.277565 CAATAAACACAATACGAAGAATCAAGG 57.722 33.333 0.00 0.00 0.00 3.61
6968 10083 6.877611 AAACACAATACGAAGAATCAAGGT 57.122 33.333 0.00 0.00 0.00 3.50
7001 10120 7.940137 TGAACTAACCCAAGCTTGTATTTTCTA 59.060 33.333 24.35 5.77 0.00 2.10
7002 10121 7.923414 ACTAACCCAAGCTTGTATTTTCTAG 57.077 36.000 24.35 15.39 0.00 2.43
7046 10380 7.811236 CACATGTTCTTCTTAATTGCACTTCAT 59.189 33.333 0.00 0.00 0.00 2.57
7053 10387 9.453572 TCTTCTTAATTGCACTTCATTACAGAT 57.546 29.630 0.00 0.00 0.00 2.90
7181 10561 1.636988 GTGCATTGCATTCCAGCTTC 58.363 50.000 15.49 0.00 41.91 3.86
7182 10562 1.067425 GTGCATTGCATTCCAGCTTCA 60.067 47.619 15.49 0.00 41.91 3.02
7192 10572 6.757237 TGCATTCCAGCTTCAAAATTTCTTA 58.243 32.000 0.00 0.00 34.99 2.10
7196 10576 9.211485 CATTCCAGCTTCAAAATTTCTTATGTT 57.789 29.630 0.00 0.00 0.00 2.71
7238 10619 7.956328 TGTTATTTCTACAGAGGAGAAGCTA 57.044 36.000 0.00 0.00 34.50 3.32
7556 10937 4.000988 ACGTCCCATACATCAAACTGTTC 58.999 43.478 0.00 0.00 0.00 3.18
7582 10963 4.494526 CGCAAAGTACAACAAAGGTTACGT 60.495 41.667 0.00 0.00 34.87 3.57
7598 10979 2.106187 ACGTAATGGTGGGGCCTATA 57.894 50.000 0.84 0.00 38.35 1.31
7775 11233 0.670162 GCGTCCCAATGGAATGATGG 59.330 55.000 0.00 0.00 44.07 3.51
7784 11242 8.212995 GTCCCAATGGAATGATGGAATTTTATT 58.787 33.333 0.00 0.00 44.07 1.40
7811 11269 6.259608 CAAGAATTGTTGCAACCAATTTGGTA 59.740 34.615 26.14 3.43 46.08 3.25
7907 11497 8.567285 AACAACATATATATAAGAGGCTTGGC 57.433 34.615 2.08 0.00 0.00 4.52
7932 11522 9.497030 GCGAAACAATCACATATAACAACATAA 57.503 29.630 0.00 0.00 0.00 1.90
8011 11768 5.833131 ACACTAAGGCTCTTTTTGGAATTGA 59.167 36.000 0.00 0.00 0.00 2.57
8013 11770 4.607293 AAGGCTCTTTTTGGAATTGACC 57.393 40.909 0.00 0.00 0.00 4.02
8034 11791 9.851686 TTGACCTGCATTATGATAAATAGTCTT 57.148 29.630 0.00 0.00 0.00 3.01
8184 11953 8.603242 TCTAACTCTAATTTGATTTATCCCGC 57.397 34.615 1.40 0.00 0.00 6.13
8185 11954 8.208224 TCTAACTCTAATTTGATTTATCCCGCA 58.792 33.333 1.40 0.00 0.00 5.69
8186 11955 7.639113 AACTCTAATTTGATTTATCCCGCAA 57.361 32.000 0.00 0.00 0.00 4.85
8187 11956 7.639113 ACTCTAATTTGATTTATCCCGCAAA 57.361 32.000 0.00 0.00 35.07 3.68
8188 11957 8.062065 ACTCTAATTTGATTTATCCCGCAAAA 57.938 30.769 0.00 0.00 34.38 2.44
8189 11958 8.527810 ACTCTAATTTGATTTATCCCGCAAAAA 58.472 29.630 0.00 0.00 34.38 1.94
8361 12226 3.751518 ACGATTAATTGAGGGGTATGGC 58.248 45.455 9.79 0.00 0.00 4.40
8363 12228 3.753272 CGATTAATTGAGGGGTATGGCAG 59.247 47.826 0.00 0.00 0.00 4.85
8381 12246 5.130350 TGGCAGTGCTAAATAATAGAACCC 58.870 41.667 16.11 0.00 0.00 4.11
8470 12356 5.473162 GTGGGACATTATATGTTAGCATGCA 59.527 40.000 21.98 2.77 45.03 3.96
8683 12569 5.552430 AAGTTTTGGGGGATTATTCCTCT 57.448 39.130 3.59 0.00 42.80 3.69
8770 12716 4.739793 TCAACAAGATCCAGGGAACAAAT 58.260 39.130 0.00 0.00 0.00 2.32
8771 12717 4.766891 TCAACAAGATCCAGGGAACAAATC 59.233 41.667 0.00 0.00 0.00 2.17
8792 12740 7.949690 AATCAGATGACCAGAATGAATTTGA 57.050 32.000 0.00 0.00 39.69 2.69
8844 12792 5.008613 TGGGAAGAACAAAGAGATGAAAACG 59.991 40.000 0.00 0.00 0.00 3.60
8879 12841 6.582636 TGAGAGAGACAAACAACACTGTTAT 58.417 36.000 0.00 0.00 45.25 1.89
8911 12873 0.389817 CGAGCAGAAATGGTGACCGA 60.390 55.000 0.00 0.00 0.00 4.69
9075 13046 9.204570 GCTCAAAGATGAACAACTAACTAACTA 57.795 33.333 0.00 0.00 34.49 2.24
9092 13063 1.906105 CTACGGGGGCAAAGCTGGTA 61.906 60.000 0.00 0.00 0.00 3.25
9242 13245 6.966534 TTTTCCTGAAAGAATCAAAGCTCT 57.033 33.333 0.00 0.00 37.67 4.09
9289 13292 7.930325 TGCTCCTTTAGTAAGATCATTGAGATG 59.070 37.037 0.00 0.00 37.00 2.90
9290 13293 7.387397 GCTCCTTTAGTAAGATCATTGAGATGG 59.613 40.741 0.00 0.00 37.00 3.51
9337 13340 3.640029 TCCAACACTATCTATCCCCGAAC 59.360 47.826 0.00 0.00 0.00 3.95
9339 13342 4.501571 CCAACACTATCTATCCCCGAACAG 60.502 50.000 0.00 0.00 0.00 3.16
9362 13365 8.418662 ACAGAACTTTACAACACTATGTCAGTA 58.581 33.333 0.00 0.00 34.98 2.74
9364 13367 9.998106 AGAACTTTACAACACTATGTCAGTAAT 57.002 29.630 7.40 0.00 34.98 1.89
9372 13375 8.799367 ACAACACTATGTCAGTAATACAGTGTA 58.201 33.333 5.24 5.24 36.06 2.90
9446 13453 3.153369 TGCATAGCAACAAGAGGGAAA 57.847 42.857 0.00 0.00 34.76 3.13
9505 13516 0.097325 GTTGTGACAACGCGGTTGAA 59.903 50.000 22.26 10.99 45.28 2.69
9639 13650 0.882474 CGAGGGAGAGTTTCGTCAGT 59.118 55.000 0.00 0.00 0.00 3.41
9734 13745 1.222567 GTGGATTATGGTGGAGGGGT 58.777 55.000 0.00 0.00 0.00 4.95
9811 13856 3.523792 CCCTCCCCCGTATATAAAGGAA 58.476 50.000 7.00 0.00 0.00 3.36
9814 13859 4.534897 CCTCCCCCGTATATAAAGGAATGT 59.465 45.833 7.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.308207 GTCTCTGTTATTCCCCTATCTATGTTC 58.692 40.741 0.00 0.00 0.00 3.18
1 2 8.013667 AGTCTCTGTTATTCCCCTATCTATGTT 58.986 37.037 0.00 0.00 0.00 2.71
6 7 5.782925 ACAGTCTCTGTTATTCCCCTATCT 58.217 41.667 0.00 0.00 42.59 1.98
7 8 7.784470 ATACAGTCTCTGTTATTCCCCTATC 57.216 40.000 7.70 0.00 42.59 2.08
8 9 8.568617 AAATACAGTCTCTGTTATTCCCCTAT 57.431 34.615 7.70 0.00 42.59 2.57
10 11 6.893020 AAATACAGTCTCTGTTATTCCCCT 57.107 37.500 7.70 0.00 42.59 4.79
11 12 7.793036 ACTAAATACAGTCTCTGTTATTCCCC 58.207 38.462 7.70 0.00 42.59 4.81
13 14 9.654663 ACAACTAAATACAGTCTCTGTTATTCC 57.345 33.333 7.70 0.00 42.59 3.01
15 16 9.998106 ACACAACTAAATACAGTCTCTGTTATT 57.002 29.630 7.70 6.45 42.59 1.40
16 17 9.640963 GACACAACTAAATACAGTCTCTGTTAT 57.359 33.333 7.70 0.00 42.59 1.89
18 19 6.929606 GGACACAACTAAATACAGTCTCTGTT 59.070 38.462 7.70 0.00 42.59 3.16
20 21 6.455647 TGGACACAACTAAATACAGTCTCTG 58.544 40.000 0.00 0.00 37.52 3.35
21 22 6.665992 TGGACACAACTAAATACAGTCTCT 57.334 37.500 0.00 0.00 0.00 3.10
23 24 6.173339 CCATGGACACAACTAAATACAGTCT 58.827 40.000 5.56 0.00 0.00 3.24
24 25 5.354234 CCCATGGACACAACTAAATACAGTC 59.646 44.000 15.22 0.00 0.00 3.51
25 26 5.013704 TCCCATGGACACAACTAAATACAGT 59.986 40.000 15.22 0.00 0.00 3.55
26 27 5.496556 TCCCATGGACACAACTAAATACAG 58.503 41.667 15.22 0.00 0.00 2.74
27 28 5.496556 CTCCCATGGACACAACTAAATACA 58.503 41.667 15.22 0.00 0.00 2.29
28 29 4.335594 GCTCCCATGGACACAACTAAATAC 59.664 45.833 15.22 0.00 0.00 1.89
29 30 4.523083 GCTCCCATGGACACAACTAAATA 58.477 43.478 15.22 0.00 0.00 1.40
30 31 3.356290 GCTCCCATGGACACAACTAAAT 58.644 45.455 15.22 0.00 0.00 1.40
31 32 2.554344 GGCTCCCATGGACACAACTAAA 60.554 50.000 15.22 0.00 0.00 1.85
32 33 1.004277 GGCTCCCATGGACACAACTAA 59.996 52.381 15.22 0.00 0.00 2.24
33 34 0.618458 GGCTCCCATGGACACAACTA 59.382 55.000 15.22 0.00 0.00 2.24
34 35 1.380302 GGCTCCCATGGACACAACT 59.620 57.895 15.22 0.00 0.00 3.16
35 36 1.678970 GGGCTCCCATGGACACAAC 60.679 63.158 15.22 0.00 35.81 3.32
36 37 2.763215 GGGCTCCCATGGACACAA 59.237 61.111 15.22 0.00 35.81 3.33
37 38 3.338250 GGGGCTCCCATGGACACA 61.338 66.667 15.22 0.00 44.65 3.72
46 47 1.340697 ACAACGATTAAAGGGGCTCCC 60.341 52.381 0.00 0.00 45.90 4.30
47 48 2.124277 ACAACGATTAAAGGGGCTCC 57.876 50.000 0.00 0.00 0.00 4.70
48 49 2.415491 GCAACAACGATTAAAGGGGCTC 60.415 50.000 0.00 0.00 0.00 4.70
49 50 1.544246 GCAACAACGATTAAAGGGGCT 59.456 47.619 0.00 0.00 0.00 5.19
50 51 1.731098 CGCAACAACGATTAAAGGGGC 60.731 52.381 0.00 0.00 34.06 5.80
51 52 1.538075 ACGCAACAACGATTAAAGGGG 59.462 47.619 0.00 0.00 36.70 4.79
52 53 2.482721 AGACGCAACAACGATTAAAGGG 59.517 45.455 0.00 0.00 36.70 3.95
53 54 3.806316 AGACGCAACAACGATTAAAGG 57.194 42.857 0.00 0.00 36.70 3.11
54 55 5.062934 TGGATAGACGCAACAACGATTAAAG 59.937 40.000 0.00 0.00 36.70 1.85
55 56 4.930405 TGGATAGACGCAACAACGATTAAA 59.070 37.500 0.00 0.00 36.70 1.52
56 57 4.496360 TGGATAGACGCAACAACGATTAA 58.504 39.130 0.00 0.00 36.70 1.40
57 58 4.109766 CTGGATAGACGCAACAACGATTA 58.890 43.478 0.00 0.00 36.70 1.75
58 59 2.930040 CTGGATAGACGCAACAACGATT 59.070 45.455 0.00 0.00 36.70 3.34
59 60 2.094182 ACTGGATAGACGCAACAACGAT 60.094 45.455 0.00 0.00 36.70 3.73
60 61 1.271379 ACTGGATAGACGCAACAACGA 59.729 47.619 0.00 0.00 36.70 3.85
61 62 1.710013 ACTGGATAGACGCAACAACG 58.290 50.000 0.00 0.00 39.50 4.10
62 63 3.187700 CCTACTGGATAGACGCAACAAC 58.812 50.000 0.00 0.00 31.83 3.32
63 64 2.167693 CCCTACTGGATAGACGCAACAA 59.832 50.000 0.00 0.00 35.39 2.83
64 65 1.754803 CCCTACTGGATAGACGCAACA 59.245 52.381 0.00 0.00 35.39 3.33
65 66 2.029623 TCCCTACTGGATAGACGCAAC 58.970 52.381 0.00 0.00 38.61 4.17
66 67 2.307768 CTCCCTACTGGATAGACGCAA 58.692 52.381 0.00 0.00 44.07 4.85
67 68 1.478837 CCTCCCTACTGGATAGACGCA 60.479 57.143 0.00 0.00 44.07 5.24
68 69 1.202903 TCCTCCCTACTGGATAGACGC 60.203 57.143 0.00 0.00 44.07 5.19
69 70 2.885894 GTTCCTCCCTACTGGATAGACG 59.114 54.545 0.00 0.00 44.07 4.18
70 71 3.637694 GTGTTCCTCCCTACTGGATAGAC 59.362 52.174 0.00 0.00 44.07 2.59
71 72 3.532232 AGTGTTCCTCCCTACTGGATAGA 59.468 47.826 0.00 0.00 44.07 1.98
72 73 3.639094 CAGTGTTCCTCCCTACTGGATAG 59.361 52.174 0.00 0.00 44.07 2.08
73 74 3.643237 CAGTGTTCCTCCCTACTGGATA 58.357 50.000 0.00 0.00 44.07 2.59
74 75 2.472029 CAGTGTTCCTCCCTACTGGAT 58.528 52.381 0.00 0.00 44.07 3.41
75 76 1.938585 CAGTGTTCCTCCCTACTGGA 58.061 55.000 0.00 0.00 42.41 3.86
77 78 1.276421 CACCAGTGTTCCTCCCTACTG 59.724 57.143 0.00 0.00 40.06 2.74
78 79 1.645710 CACCAGTGTTCCTCCCTACT 58.354 55.000 0.00 0.00 0.00 2.57
79 80 0.613777 CCACCAGTGTTCCTCCCTAC 59.386 60.000 0.00 0.00 0.00 3.18
80 81 1.198759 GCCACCAGTGTTCCTCCCTA 61.199 60.000 0.00 0.00 0.00 3.53
81 82 2.529744 GCCACCAGTGTTCCTCCCT 61.530 63.158 0.00 0.00 0.00 4.20
82 83 2.034221 GCCACCAGTGTTCCTCCC 59.966 66.667 0.00 0.00 0.00 4.30
83 84 2.358737 CGCCACCAGTGTTCCTCC 60.359 66.667 0.00 0.00 0.00 4.30
84 85 1.961277 CACGCCACCAGTGTTCCTC 60.961 63.158 0.00 0.00 36.98 3.71
85 86 2.111043 CACGCCACCAGTGTTCCT 59.889 61.111 0.00 0.00 36.98 3.36
86 87 3.660111 GCACGCCACCAGTGTTCC 61.660 66.667 0.00 0.00 41.36 3.62
87 88 2.260869 ATGCACGCCACCAGTGTTC 61.261 57.895 0.00 0.00 41.36 3.18
88 89 2.203337 ATGCACGCCACCAGTGTT 60.203 55.556 0.00 0.00 41.36 3.32
89 90 2.979676 CATGCACGCCACCAGTGT 60.980 61.111 0.00 0.00 41.36 3.55
90 91 2.669229 TCATGCACGCCACCAGTG 60.669 61.111 0.00 0.00 42.15 3.66
91 92 2.669569 GTCATGCACGCCACCAGT 60.670 61.111 0.00 0.00 0.00 4.00
92 93 2.669229 TGTCATGCACGCCACCAG 60.669 61.111 0.00 0.00 0.00 4.00
93 94 2.977456 GTGTCATGCACGCCACCA 60.977 61.111 0.00 0.00 38.45 4.17
100 101 1.401409 CCACAATTCCGTGTCATGCAC 60.401 52.381 9.41 9.41 44.36 4.57
101 102 0.880441 CCACAATTCCGTGTCATGCA 59.120 50.000 0.00 0.00 34.98 3.96
102 103 0.881118 ACCACAATTCCGTGTCATGC 59.119 50.000 0.00 0.00 34.98 4.06
103 104 3.334691 ACTACCACAATTCCGTGTCATG 58.665 45.455 0.00 0.00 34.98 3.07
104 105 3.695830 ACTACCACAATTCCGTGTCAT 57.304 42.857 0.00 0.00 34.98 3.06
105 106 4.500127 CATACTACCACAATTCCGTGTCA 58.500 43.478 0.00 0.00 34.98 3.58
106 107 3.308866 GCATACTACCACAATTCCGTGTC 59.691 47.826 0.00 0.00 34.98 3.67
107 108 3.267483 GCATACTACCACAATTCCGTGT 58.733 45.455 0.00 0.00 34.98 4.49
108 109 3.063452 GTGCATACTACCACAATTCCGTG 59.937 47.826 0.00 0.00 36.61 4.94
109 110 3.267483 GTGCATACTACCACAATTCCGT 58.733 45.455 0.00 0.00 32.37 4.69
110 111 3.266636 TGTGCATACTACCACAATTCCG 58.733 45.455 0.00 0.00 38.87 4.30
111 112 6.710295 TGATATGTGCATACTACCACAATTCC 59.290 38.462 0.00 0.00 44.22 3.01
112 113 7.728847 TGATATGTGCATACTACCACAATTC 57.271 36.000 0.00 0.00 44.22 2.17
113 114 8.696043 AATGATATGTGCATACTACCACAATT 57.304 30.769 0.00 0.00 44.22 2.32
114 115 8.696043 AAATGATATGTGCATACTACCACAAT 57.304 30.769 0.00 0.00 44.22 2.71
115 116 8.518430 AAAATGATATGTGCATACTACCACAA 57.482 30.769 0.00 0.00 44.22 3.33
116 117 7.228507 GGAAAATGATATGTGCATACTACCACA 59.771 37.037 0.00 0.00 45.01 4.17
117 118 7.571244 CGGAAAATGATATGTGCATACTACCAC 60.571 40.741 0.00 0.00 0.00 4.16
118 119 6.426633 CGGAAAATGATATGTGCATACTACCA 59.573 38.462 0.00 0.00 0.00 3.25
119 120 6.649141 TCGGAAAATGATATGTGCATACTACC 59.351 38.462 0.00 0.00 0.00 3.18
120 121 7.652300 TCGGAAAATGATATGTGCATACTAC 57.348 36.000 0.00 0.00 0.00 2.73
121 122 9.936759 TTATCGGAAAATGATATGTGCATACTA 57.063 29.630 0.00 0.00 0.00 1.82
122 123 8.846943 TTATCGGAAAATGATATGTGCATACT 57.153 30.769 0.00 0.00 0.00 2.12
123 124 9.329913 GTTTATCGGAAAATGATATGTGCATAC 57.670 33.333 0.00 0.00 0.00 2.39
124 125 8.511321 GGTTTATCGGAAAATGATATGTGCATA 58.489 33.333 0.00 0.00 0.00 3.14
125 126 7.231317 AGGTTTATCGGAAAATGATATGTGCAT 59.769 33.333 0.00 0.00 0.00 3.96
126 127 6.545666 AGGTTTATCGGAAAATGATATGTGCA 59.454 34.615 0.00 0.00 0.00 4.57
127 128 6.970484 AGGTTTATCGGAAAATGATATGTGC 58.030 36.000 0.00 0.00 0.00 4.57
128 129 8.383318 AGAGGTTTATCGGAAAATGATATGTG 57.617 34.615 0.00 0.00 0.00 3.21
134 135 9.982651 CTCTTATAGAGGTTTATCGGAAAATGA 57.017 33.333 0.00 0.00 38.67 2.57
135 136 9.765795 ACTCTTATAGAGGTTTATCGGAAAATG 57.234 33.333 8.44 0.00 46.45 2.32
136 137 9.984190 GACTCTTATAGAGGTTTATCGGAAAAT 57.016 33.333 8.44 0.00 46.45 1.82
137 138 8.974238 TGACTCTTATAGAGGTTTATCGGAAAA 58.026 33.333 8.44 0.00 46.45 2.29
138 139 8.529424 TGACTCTTATAGAGGTTTATCGGAAA 57.471 34.615 8.44 0.00 46.45 3.13
176 177 3.412981 TCGATTCGAGAGAGAGCTTTG 57.587 47.619 4.29 0.00 43.69 2.77
205 206 6.634805 TGGTTGAGTTGTAGCATTTTTGAAA 58.365 32.000 0.00 0.00 0.00 2.69
214 215 3.949132 TGCATATGGTTGAGTTGTAGCA 58.051 40.909 4.56 0.00 0.00 3.49
231 232 3.022557 ACTGATGGCCTACAAATGCAT 57.977 42.857 3.32 0.00 0.00 3.96
244 245 2.758089 GCAGGAGCGCAACTGATGG 61.758 63.158 28.33 8.38 36.86 3.51
286 287 2.048603 GCACAAGACCATGCCCTCC 61.049 63.158 0.00 0.00 35.73 4.30
330 333 2.045926 CTTTGAGAGGGGCCCACG 60.046 66.667 27.72 0.72 0.00 4.94
372 375 1.069765 CAACGTCCAGCACAGGTCT 59.930 57.895 0.00 0.00 0.00 3.85
373 376 1.961277 CCAACGTCCAGCACAGGTC 60.961 63.158 0.00 0.00 0.00 3.85
428 443 1.148310 CCTTCACACACATCGGACAC 58.852 55.000 0.00 0.00 0.00 3.67
434 449 3.131577 TCCCGTATACCTTCACACACATC 59.868 47.826 0.00 0.00 0.00 3.06
450 467 0.545787 ATGGTGTTGGTCCTCCCGTA 60.546 55.000 0.00 0.00 35.15 4.02
457 474 2.228822 GTGATGTGAATGGTGTTGGTCC 59.771 50.000 0.00 0.00 0.00 4.46
492 510 0.535102 ACCTTGAACCTGACCTTGCG 60.535 55.000 0.00 0.00 0.00 4.85
493 511 1.609072 GAACCTTGAACCTGACCTTGC 59.391 52.381 0.00 0.00 0.00 4.01
494 512 3.214696 AGAACCTTGAACCTGACCTTG 57.785 47.619 0.00 0.00 0.00 3.61
495 513 3.953542 AAGAACCTTGAACCTGACCTT 57.046 42.857 0.00 0.00 0.00 3.50
553 571 4.510340 GGAACCGATACACCATGACAATAC 59.490 45.833 0.00 0.00 0.00 1.89
557 575 2.167693 GAGGAACCGATACACCATGACA 59.832 50.000 0.00 0.00 0.00 3.58
642 660 0.971386 TGCAGTCATGTGAGAGCTCA 59.029 50.000 17.77 0.00 37.24 4.26
664 682 6.129273 GCGCGAACGAGTGATCTTTTTATATA 60.129 38.462 12.10 0.00 43.93 0.86
667 685 3.241995 GCGCGAACGAGTGATCTTTTTAT 60.242 43.478 12.10 0.00 43.93 1.40
685 703 1.082117 ATCCTTAGTTTGTCCGCGCG 61.082 55.000 25.67 25.67 0.00 6.86
690 708 6.877611 TTGACTTTGATCCTTAGTTTGTCC 57.122 37.500 0.00 0.00 0.00 4.02
697 715 3.246226 CGCGGATTGACTTTGATCCTTAG 59.754 47.826 0.00 0.00 39.74 2.18
734 752 0.394352 AATCGGTCCATGGAACCTGC 60.394 55.000 24.31 7.50 0.00 4.85
776 794 1.081892 GCATGCATGAGACGACAAGT 58.918 50.000 30.64 0.00 0.00 3.16
924 2173 0.531974 GACGCTGGTGGTCAAACTGA 60.532 55.000 0.00 0.00 34.56 3.41
1081 2353 1.141657 CCCGACATGGAATCCATCTGT 59.858 52.381 12.63 10.18 43.15 3.41
1394 3539 9.988815 GCTAGTCCTGATCAATTAGATTCTTAA 57.011 33.333 0.00 0.00 37.00 1.85
1425 3570 1.209747 GACCGAACAAGCCCTTAGGAT 59.790 52.381 0.00 0.00 33.47 3.24
1426 3571 0.611714 GACCGAACAAGCCCTTAGGA 59.388 55.000 0.00 0.00 33.47 2.94
1427 3572 0.323629 TGACCGAACAAGCCCTTAGG 59.676 55.000 0.00 0.00 0.00 2.69
1428 3573 1.002087 AGTGACCGAACAAGCCCTTAG 59.998 52.381 0.00 0.00 0.00 2.18
1429 3574 1.001633 GAGTGACCGAACAAGCCCTTA 59.998 52.381 0.00 0.00 0.00 2.69
1430 3575 0.250338 GAGTGACCGAACAAGCCCTT 60.250 55.000 0.00 0.00 0.00 3.95
1431 3576 1.371558 GAGTGACCGAACAAGCCCT 59.628 57.895 0.00 0.00 0.00 5.19
1432 3577 1.671379 GGAGTGACCGAACAAGCCC 60.671 63.158 0.00 0.00 0.00 5.19
1433 3578 0.670854 GAGGAGTGACCGAACAAGCC 60.671 60.000 0.00 0.00 44.74 4.35
1434 3579 0.318762 AGAGGAGTGACCGAACAAGC 59.681 55.000 0.00 0.00 44.74 4.01
1436 3581 0.966920 GGAGAGGAGTGACCGAACAA 59.033 55.000 0.00 0.00 44.74 2.83
1437 3582 0.898789 GGGAGAGGAGTGACCGAACA 60.899 60.000 0.00 0.00 44.74 3.18
1438 3583 1.891616 GGGAGAGGAGTGACCGAAC 59.108 63.158 0.00 0.00 44.74 3.95
1439 3584 4.436368 GGGAGAGGAGTGACCGAA 57.564 61.111 0.00 0.00 44.74 4.30
1441 3586 2.045242 TCGGGAGAGGAGTGACCG 60.045 66.667 0.00 0.00 45.52 4.79
1454 3599 2.143419 CCCCTCCAATCCTCTCGGG 61.143 68.421 0.00 0.00 0.00 5.14
1455 3600 0.472734 ATCCCCTCCAATCCTCTCGG 60.473 60.000 0.00 0.00 0.00 4.63
1458 3603 1.527457 CCAATCCCCTCCAATCCTCT 58.473 55.000 0.00 0.00 0.00 3.69
1459 3604 0.178978 GCCAATCCCCTCCAATCCTC 60.179 60.000 0.00 0.00 0.00 3.71
1460 3605 1.933629 GCCAATCCCCTCCAATCCT 59.066 57.895 0.00 0.00 0.00 3.24
1461 3606 1.529244 CGCCAATCCCCTCCAATCC 60.529 63.158 0.00 0.00 0.00 3.01
1462 3607 1.103398 CACGCCAATCCCCTCCAATC 61.103 60.000 0.00 0.00 0.00 2.67
1463 3608 1.076777 CACGCCAATCCCCTCCAAT 60.077 57.895 0.00 0.00 0.00 3.16
1464 3609 2.354729 CACGCCAATCCCCTCCAA 59.645 61.111 0.00 0.00 0.00 3.53
1465 3610 3.727258 CCACGCCAATCCCCTCCA 61.727 66.667 0.00 0.00 0.00 3.86
1466 3611 2.284515 AATCCACGCCAATCCCCTCC 62.285 60.000 0.00 0.00 0.00 4.30
1467 3612 1.103398 CAATCCACGCCAATCCCCTC 61.103 60.000 0.00 0.00 0.00 4.30
1469 3614 2.127232 CCAATCCACGCCAATCCCC 61.127 63.158 0.00 0.00 0.00 4.81
1471 3616 1.077068 TCCCAATCCACGCCAATCC 60.077 57.895 0.00 0.00 0.00 3.01
1472 3617 1.714899 CGTCCCAATCCACGCCAATC 61.715 60.000 0.00 0.00 0.00 2.67
1476 3621 0.463116 AATACGTCCCAATCCACGCC 60.463 55.000 0.00 0.00 39.73 5.68
1478 3623 3.004171 TCAAAATACGTCCCAATCCACG 58.996 45.455 0.00 0.00 41.90 4.94
1479 3624 4.007659 AGTCAAAATACGTCCCAATCCAC 58.992 43.478 0.00 0.00 0.00 4.02
1480 3625 4.295141 AGTCAAAATACGTCCCAATCCA 57.705 40.909 0.00 0.00 0.00 3.41
1481 3626 5.644636 TGTAAGTCAAAATACGTCCCAATCC 59.355 40.000 0.00 0.00 0.00 3.01
1482 3627 6.730960 TGTAAGTCAAAATACGTCCCAATC 57.269 37.500 0.00 0.00 0.00 2.67
1484 3629 5.470777 CCTTGTAAGTCAAAATACGTCCCAA 59.529 40.000 0.00 0.00 35.48 4.12
1485 3630 4.998672 CCTTGTAAGTCAAAATACGTCCCA 59.001 41.667 0.00 0.00 35.48 4.37
1486 3631 4.393990 CCCTTGTAAGTCAAAATACGTCCC 59.606 45.833 0.00 0.00 35.48 4.46
1489 3634 4.976864 ACCCCTTGTAAGTCAAAATACGT 58.023 39.130 0.00 0.00 35.48 3.57
1493 3638 8.372459 GGATTTAAACCCCTTGTAAGTCAAAAT 58.628 33.333 0.00 0.00 35.48 1.82
1495 3640 7.070629 AGGATTTAAACCCCTTGTAAGTCAAA 58.929 34.615 0.00 0.00 35.48 2.69
1496 3641 6.616577 AGGATTTAAACCCCTTGTAAGTCAA 58.383 36.000 0.00 0.00 34.61 3.18
1497 3642 6.045106 AGAGGATTTAAACCCCTTGTAAGTCA 59.955 38.462 11.12 0.00 0.00 3.41
1498 3643 6.482524 AGAGGATTTAAACCCCTTGTAAGTC 58.517 40.000 11.12 0.00 0.00 3.01
1499 3644 6.464530 AGAGGATTTAAACCCCTTGTAAGT 57.535 37.500 11.12 0.00 0.00 2.24
1504 3735 6.127338 GGATTGAAGAGGATTTAAACCCCTTG 60.127 42.308 11.12 0.00 0.00 3.61
1530 3761 0.608640 GGTTGAGTGTGGATCCGAGT 59.391 55.000 7.39 0.00 0.00 4.18
1538 3779 1.334960 GCATTGTTCGGTTGAGTGTGG 60.335 52.381 0.00 0.00 0.00 4.17
1553 3794 6.698766 GTCAAGCAATTTATCCTTAGGCATTG 59.301 38.462 0.00 1.13 0.00 2.82
1556 3797 5.357878 CAGTCAAGCAATTTATCCTTAGGCA 59.642 40.000 0.00 0.00 0.00 4.75
1580 3821 7.188157 CGTCTAGAAATGACTAGTAGTTGGAC 58.812 42.308 3.85 4.33 40.26 4.02
1621 3862 2.890109 CGCATGAAGCAGCCGATCC 61.890 63.158 0.00 0.00 46.13 3.36
1674 3915 5.123820 TGGTACATTTGAGCAAAGATACTGC 59.876 40.000 14.12 0.00 40.24 4.40
1675 3916 6.741992 TGGTACATTTGAGCAAAGATACTG 57.258 37.500 14.12 5.95 33.32 2.74
1743 3995 4.869861 CGGATGATGCATCGTATTTATGGA 59.130 41.667 21.25 0.00 41.35 3.41
1771 4024 8.085296 GTGGATGGCGGATTATCTATTCTATAG 58.915 40.741 0.00 0.00 0.00 1.31
1779 4033 2.567169 CTGGTGGATGGCGGATTATCTA 59.433 50.000 0.00 0.00 0.00 1.98
1800 4054 6.716628 TCTTATTAATGGGATGGTGCTTCATC 59.283 38.462 10.15 10.15 41.93 2.92
2068 4322 9.903682 CAATAATTTAGAGCCACATTCCTAATG 57.096 33.333 0.00 0.00 44.48 1.90
2078 4332 7.649306 CCAATGTTAGCAATAATTTAGAGCCAC 59.351 37.037 0.00 0.00 0.00 5.01
2102 4356 0.817634 CGAAGGAAGTGTTGGCACCA 60.818 55.000 0.00 0.00 46.35 4.17
2126 4380 4.464597 TGCAAGTTGGTGAAAAGGTTTACT 59.535 37.500 4.75 0.00 0.00 2.24
2127 4381 4.749976 TGCAAGTTGGTGAAAAGGTTTAC 58.250 39.130 4.75 0.00 0.00 2.01
2163 4417 3.201708 CAGACCCTCCAGATGAAAGGATT 59.798 47.826 3.57 0.00 32.53 3.01
2176 4430 3.073209 ACCTTTTCTTCTTCAGACCCTCC 59.927 47.826 0.00 0.00 0.00 4.30
2214 4468 9.483062 TTTTTAAAATTGATTTGACAAAGCGTG 57.517 25.926 11.28 0.00 33.44 5.34
2252 4506 0.961753 TCGCGAGCTCCATCATACAT 59.038 50.000 3.71 0.00 0.00 2.29
2254 4508 1.132588 GTTCGCGAGCTCCATCATAC 58.867 55.000 16.26 0.00 0.00 2.39
2348 4602 3.342377 TTAATCGGGCTGTTGATCACA 57.658 42.857 0.00 0.00 0.00 3.58
2386 4640 7.042254 ACACGAGGTTCAAAGTATTCACTAAAC 60.042 37.037 0.00 0.00 33.48 2.01
2409 4663 3.369546 ACACATTTGCCTGCTAAACAC 57.630 42.857 0.00 0.00 0.00 3.32
2430 4684 7.178628 AGACTAATTAGGCTCTCAACACTACAA 59.821 37.037 15.54 0.00 36.90 2.41
2433 4687 6.890268 TCAGACTAATTAGGCTCTCAACACTA 59.110 38.462 18.43 0.00 40.46 2.74
2452 4706 3.950397 TGTCAACTTTTGGTGTCAGACT 58.050 40.909 1.31 0.00 38.53 3.24
2455 4709 4.578516 TGGTATGTCAACTTTTGGTGTCAG 59.421 41.667 0.00 0.00 38.45 3.51
2460 4714 6.976934 AAATCTGGTATGTCAACTTTTGGT 57.023 33.333 0.00 0.00 0.00 3.67
2532 4786 4.293415 GCAACCTTTTGTGAGATTGACAG 58.707 43.478 0.00 0.00 34.90 3.51
2598 4853 2.011947 TGCGAATTCAGAGGCTGATTG 58.988 47.619 6.22 0.00 40.39 2.67
2602 4857 1.699656 CCGTGCGAATTCAGAGGCTG 61.700 60.000 6.22 0.00 0.00 4.85
2616 4871 2.993220 CCAAAATTTAAAGAGGCCGTGC 59.007 45.455 0.00 0.00 0.00 5.34
2619 4874 3.926527 GCTTCCAAAATTTAAAGAGGCCG 59.073 43.478 0.00 0.00 0.00 6.13
2637 4892 6.340962 ACTTTGGGGTAATTAACTTGCTTC 57.659 37.500 0.00 0.00 0.00 3.86
2642 4897 8.721133 AATCTCAACTTTGGGGTAATTAACTT 57.279 30.769 0.00 0.00 0.00 2.66
2644 4899 9.016438 TGTAATCTCAACTTTGGGGTAATTAAC 57.984 33.333 0.00 0.00 0.00 2.01
2725 4980 7.768324 TTACCAGGTATTTTGGGAGGTAATA 57.232 36.000 0.00 0.00 40.11 0.98
2745 5000 3.504520 TGAATTTCTGGCCGAGTTTTACC 59.495 43.478 0.00 0.00 0.00 2.85
2746 5001 4.759516 TGAATTTCTGGCCGAGTTTTAC 57.240 40.909 0.00 0.00 0.00 2.01
2747 5002 4.398044 GGATGAATTTCTGGCCGAGTTTTA 59.602 41.667 0.00 0.00 0.00 1.52
2748 5003 3.193479 GGATGAATTTCTGGCCGAGTTTT 59.807 43.478 0.00 0.00 0.00 2.43
2759 5014 2.357154 CCCTTGGACCGGATGAATTTCT 60.357 50.000 9.46 0.00 0.00 2.52
2761 5016 1.959989 GCCCTTGGACCGGATGAATTT 60.960 52.381 9.46 0.00 0.00 1.82
2805 5060 1.080638 AAGTGGGGTTTGGGATGCTA 58.919 50.000 0.00 0.00 0.00 3.49
2838 5093 7.833682 TCATGGCAGAAAATAAATTCCTCACTA 59.166 33.333 0.00 0.00 0.00 2.74
2840 5095 6.866480 TCATGGCAGAAAATAAATTCCTCAC 58.134 36.000 0.00 0.00 0.00 3.51
2862 5117 5.313712 GGTAAGATGTCCCTCAACTTTTCA 58.686 41.667 0.00 0.00 39.34 2.69
2877 5132 5.245531 TGTCTACAGCTTTTGGGTAAGATG 58.754 41.667 0.00 0.00 44.78 2.90
2883 5138 3.788227 TGATGTCTACAGCTTTTGGGT 57.212 42.857 0.00 0.00 32.67 4.51
2894 5149 9.045223 TGAGCACAACAATATTATGATGTCTAC 57.955 33.333 7.27 0.00 34.53 2.59
2927 5182 6.608002 ACAAACTGTTATAAGGGGTTGTTTGA 59.392 34.615 18.03 0.00 42.92 2.69
2935 5190 6.834168 AACATCACAAACTGTTATAAGGGG 57.166 37.500 0.00 0.00 33.96 4.79
2950 5205 8.969260 ATGCTAGATTCAAAGATAACATCACA 57.031 30.769 0.00 0.00 0.00 3.58
2961 5216 6.478344 GGTAGTGAGTGATGCTAGATTCAAAG 59.522 42.308 0.00 0.00 0.00 2.77
2970 5225 1.676529 GCTCGGTAGTGAGTGATGCTA 59.323 52.381 0.00 0.00 38.28 3.49
2978 5233 1.959985 AGATGATGGCTCGGTAGTGAG 59.040 52.381 0.00 0.00 39.05 3.51
2980 5235 1.959985 AGAGATGATGGCTCGGTAGTG 59.040 52.381 0.00 0.00 37.46 2.74
3009 5264 9.017509 GGAAGCATCAGGAATATCATATTTTCA 57.982 33.333 0.00 0.00 0.00 2.69
3021 5276 5.184892 ACTAAACTGGAAGCATCAGGAAT 57.815 39.130 6.06 0.00 37.60 3.01
3024 5279 3.441572 CCAACTAAACTGGAAGCATCAGG 59.558 47.826 6.06 0.00 37.60 3.86
3036 5291 7.554959 TCTCTCAACTATTCCCAACTAAACT 57.445 36.000 0.00 0.00 0.00 2.66
3139 5395 3.503748 GTCACTCAAGAATGGGGTTTCAG 59.496 47.826 0.00 0.00 0.00 3.02
3169 5425 4.478206 TGATTGAGCCTGTTAGGAGAAG 57.522 45.455 0.00 0.00 37.67 2.85
3180 5436 1.687368 GGGGATTGCTTGATTGAGCCT 60.687 52.381 0.00 0.00 42.01 4.58
3182 5438 1.772836 AGGGGATTGCTTGATTGAGC 58.227 50.000 0.00 0.00 43.00 4.26
3262 5518 8.398665 ACGATGAGGTTCTAAATTTTGCTTATC 58.601 33.333 0.00 0.00 0.00 1.75
3273 5529 7.442969 ACACATTAACAACGATGAGGTTCTAAA 59.557 33.333 0.00 0.00 0.00 1.85
3274 5530 6.932400 ACACATTAACAACGATGAGGTTCTAA 59.068 34.615 0.00 0.00 0.00 2.10
3317 5574 5.712152 ATCATTGACTTGTGGAGGTTTTC 57.288 39.130 0.00 0.00 0.00 2.29
3563 6312 4.993029 TTTTGACTGTCCGGTTTCAAAT 57.007 36.364 17.20 3.22 37.69 2.32
3571 6320 1.730064 CCGTGTATTTTGACTGTCCGG 59.270 52.381 5.17 0.00 0.00 5.14
3576 6325 2.292016 TGGTTGCCGTGTATTTTGACTG 59.708 45.455 0.00 0.00 0.00 3.51
3604 6353 8.547967 TCTCACAATTGGTTCTAGATTGTTAC 57.452 34.615 10.83 0.00 40.84 2.50
3621 6370 6.114187 TGTTGTTACCTCTCATCTCACAAT 57.886 37.500 0.00 0.00 0.00 2.71
3674 6423 6.747125 TCTGTGAAAATGCAAAGCTTTCATA 58.253 32.000 9.23 12.90 40.23 2.15
3678 6427 6.740411 TTTTCTGTGAAAATGCAAAGCTTT 57.260 29.167 5.69 5.69 0.00 3.51
3682 6431 5.961263 GCACTTTTTCTGTGAAAATGCAAAG 59.039 36.000 18.47 10.79 37.60 2.77
3695 6444 4.027572 TCCTTTCGTTGCACTTTTTCTG 57.972 40.909 0.00 0.00 0.00 3.02
3777 6526 3.313526 CCCAATTAGAAATGCCAGAGTCG 59.686 47.826 0.00 0.00 0.00 4.18
3779 6528 3.026694 GCCCAATTAGAAATGCCAGAGT 58.973 45.455 0.00 0.00 0.00 3.24
3793 6542 3.312736 AGAATATGAACCCGCCCAATT 57.687 42.857 0.00 0.00 0.00 2.32
3810 6559 6.426633 TCAAAATGCGAGATACAAGTCAAGAA 59.573 34.615 0.00 0.00 0.00 2.52
3812 6561 6.169419 TCAAAATGCGAGATACAAGTCAAG 57.831 37.500 0.00 0.00 0.00 3.02
3843 6592 3.073798 TGGAACAGAGGGATTACAAGCAA 59.926 43.478 0.00 0.00 0.00 3.91
4065 6837 7.591795 CGGGCGACAATTTAGCTATATCTATAG 59.408 40.741 0.00 0.00 38.89 1.31
4085 6857 1.456145 TATAGGGCAACTCGGGCGA 60.456 57.895 0.00 0.00 0.00 5.54
4090 6862 4.489810 CTTATGCTCTATAGGGCAACTCG 58.510 47.826 30.27 15.17 41.90 4.18
4102 6874 5.425217 TCTTCAATGTCACCCTTATGCTCTA 59.575 40.000 0.00 0.00 0.00 2.43
4109 6881 4.346709 TGTCACTCTTCAATGTCACCCTTA 59.653 41.667 0.00 0.00 0.00 2.69
4115 6887 5.473066 TGAGATGTCACTCTTCAATGTCA 57.527 39.130 0.00 0.00 37.73 3.58
4142 6914 8.725405 TCCATATTCGTAAGCAAACTTCATAA 57.275 30.769 0.00 0.00 37.33 1.90
4156 6929 7.095397 CGCTCCAAAATACATTCCATATTCGTA 60.095 37.037 0.00 0.00 0.00 3.43
4179 6952 4.083565 GAGAGATATTTACTCCCTCCGCT 58.916 47.826 0.00 0.00 35.27 5.52
4261 7034 4.698201 TGACTTGTATGGACTTGGTTGA 57.302 40.909 0.00 0.00 0.00 3.18
4262 7035 4.396166 GGATGACTTGTATGGACTTGGTTG 59.604 45.833 0.00 0.00 0.00 3.77
4278 7051 6.126863 TGTTTTCCTCATACTTGGATGACT 57.873 37.500 0.00 0.00 32.39 3.41
4312 7085 4.165950 ACTGTGGCACCTATTATGGATCAA 59.834 41.667 16.26 0.00 0.00 2.57
4329 7102 3.292460 TGGGGTTAGTTCAAAACTGTGG 58.708 45.455 2.65 0.00 42.84 4.17
4331 7104 4.245251 ACTGGGGTTAGTTCAAAACTGT 57.755 40.909 2.65 0.00 42.84 3.55
4350 7123 4.189231 AGTTAGTGTCGCAGTTTTGAACT 58.811 39.130 0.00 0.00 44.06 3.01
4357 7130 3.188159 TCCAAAGTTAGTGTCGCAGTT 57.812 42.857 0.00 0.00 0.00 3.16
4371 7144 4.384647 CCTCTTACTCCCTTGGATCCAAAG 60.385 50.000 26.87 22.56 35.33 2.77
4381 7154 3.465966 ACCCAAAAACCTCTTACTCCCTT 59.534 43.478 0.00 0.00 0.00 3.95
4393 7166 6.294675 GGGTAATAGTGTAACACCCAAAAACC 60.295 42.308 3.21 5.03 46.81 3.27
4457 7230 7.110155 TCTTATCAGGAAACACAATAGGGAAC 58.890 38.462 0.00 0.00 0.00 3.62
4517 7290 7.119116 TGTTACACGAAGCTGATATTTGACAAT 59.881 33.333 0.00 0.00 0.00 2.71
4639 7413 6.552445 TTTCAAAATTGGAAGAAGGTTGGA 57.448 33.333 0.00 0.00 0.00 3.53
4640 7414 8.150296 ACTATTTCAAAATTGGAAGAAGGTTGG 58.850 33.333 0.00 0.00 0.00 3.77
4641 7415 9.546428 AACTATTTCAAAATTGGAAGAAGGTTG 57.454 29.630 0.00 0.00 0.00 3.77
4712 7492 5.299949 GGCAGAACAAAGAAAATGATGGTT 58.700 37.500 0.00 0.00 0.00 3.67
4900 7684 5.168569 TCTGGTCTTGCTCGTACAAAATAG 58.831 41.667 0.00 0.00 0.00 1.73
4917 7701 0.102120 CTGAGCCGAGTCATCTGGTC 59.898 60.000 0.00 0.00 37.59 4.02
4987 7771 6.293680 CGTAGTCAGTGTCATCATATACTGCT 60.294 42.308 0.00 0.00 40.15 4.24
5011 7795 1.904771 TGGTACAATGCCTCTCCCG 59.095 57.895 0.00 0.00 31.92 5.14
5077 7861 3.035363 TGCCGATGAAGGGATAACACTA 58.965 45.455 0.00 0.00 0.00 2.74
5125 7909 3.965379 TGCATTGCCATCAACTCATTT 57.035 38.095 6.12 0.00 34.60 2.32
5502 8286 2.100584 GACAATGGTGGCTTGTTTGTGA 59.899 45.455 0.00 0.00 36.98 3.58
5509 8293 2.198827 TAGTGGACAATGGTGGCTTG 57.801 50.000 0.00 0.00 31.06 4.01
5710 8494 4.956075 AGTCCACTTTTCACAGTCCAAAAT 59.044 37.500 0.00 0.00 0.00 1.82
5884 8671 4.664150 AAACTCCGGAATTTTGCTTGAA 57.336 36.364 4.76 0.00 0.00 2.69
5944 8731 2.488153 GTCAATTGTAAGGCCACTCACC 59.512 50.000 5.01 0.00 0.00 4.02
6184 9013 4.868171 CACTGGAATGAAAATGCAGAATGG 59.132 41.667 1.99 0.00 38.38 3.16
6185 9014 5.475719 ACACTGGAATGAAAATGCAGAATG 58.524 37.500 1.99 0.00 38.38 2.67
6251 9090 0.752658 GCATTTATGGTTGGCCTCCC 59.247 55.000 3.32 4.00 35.27 4.30
6287 9173 0.829990 ACTTTTGGTGTGCTTTGGGG 59.170 50.000 0.00 0.00 0.00 4.96
6420 9334 3.551454 GCAACCGCTATGTCGTATTCCTA 60.551 47.826 0.00 0.00 34.30 2.94
6465 9379 7.148641 ACAGTGAAGTCGACATATAATGATCC 58.851 38.462 19.50 0.00 0.00 3.36
6503 9417 4.443598 GGAACAATCATCCCTACTCCAGAC 60.444 50.000 0.00 0.00 0.00 3.51
6620 9534 1.845809 GCAGCCAGACAACAACTCCG 61.846 60.000 0.00 0.00 0.00 4.63
6749 9668 8.463930 ACTTGTTCAAAATTCTACCAAGATCA 57.536 30.769 0.00 0.00 0.00 2.92
6834 9772 8.675504 GTTTAGTCAGCTCAGTGTAGTAATCTA 58.324 37.037 0.00 0.00 0.00 1.98
7129 10483 7.510685 TCAGGACTTGCTAGAAGGTATATGAAT 59.489 37.037 1.04 0.00 0.00 2.57
7130 10484 6.839134 TCAGGACTTGCTAGAAGGTATATGAA 59.161 38.462 1.04 0.00 0.00 2.57
7131 10485 6.373759 TCAGGACTTGCTAGAAGGTATATGA 58.626 40.000 1.04 0.00 0.00 2.15
7556 10937 2.616842 ACCTTTGTTGTACTTTGCGAGG 59.383 45.455 0.00 0.00 0.00 4.63
7582 10963 5.416858 TCTTGTATATAGGCCCCACCATTA 58.583 41.667 0.00 0.00 43.14 1.90
7784 11242 6.259608 CCAAATTGGTTGCAACAATTCTTGTA 59.740 34.615 29.55 3.20 45.07 2.41
7895 11485 2.264005 TTGTTTCGCCAAGCCTCTTA 57.736 45.000 0.00 0.00 0.00 2.10
7932 11522 7.788026 TGTTTCCGATAGTAAACATATGGAGT 58.212 34.615 7.80 0.00 39.88 3.85
7963 11720 7.493645 TGTGATGAGTTACAAATATCAGCTCAG 59.506 37.037 0.00 0.00 35.40 3.35
8011 11768 9.632638 ACAAAGACTATTTATCATAATGCAGGT 57.367 29.630 0.00 0.00 0.00 4.00
8013 11770 9.803130 CGACAAAGACTATTTATCATAATGCAG 57.197 33.333 0.00 0.00 0.00 4.41
8034 11791 5.593679 TCCAAAAATAAACCAACCGACAA 57.406 34.783 0.00 0.00 0.00 3.18
8188 11957 9.533253 CTGTTGGTAAATCAAATCAGAGTTTTT 57.467 29.630 0.00 0.00 0.00 1.94
8189 11958 8.912988 TCTGTTGGTAAATCAAATCAGAGTTTT 58.087 29.630 0.00 0.00 30.99 2.43
8190 11959 8.463930 TCTGTTGGTAAATCAAATCAGAGTTT 57.536 30.769 0.00 0.00 30.99 2.66
8191 11960 8.641498 ATCTGTTGGTAAATCAAATCAGAGTT 57.359 30.769 0.00 0.00 35.05 3.01
8192 11961 7.884877 TGATCTGTTGGTAAATCAAATCAGAGT 59.115 33.333 0.00 0.00 35.05 3.24
8193 11962 8.272545 TGATCTGTTGGTAAATCAAATCAGAG 57.727 34.615 0.00 0.00 35.05 3.35
8194 11963 8.634335 TTGATCTGTTGGTAAATCAAATCAGA 57.366 30.769 0.00 0.00 35.72 3.27
8199 11968 9.739276 AGTCTATTGATCTGTTGGTAAATCAAA 57.261 29.630 0.00 0.00 40.42 2.69
8200 11969 9.739276 AAGTCTATTGATCTGTTGGTAAATCAA 57.261 29.630 0.00 0.00 41.06 2.57
8201 11970 9.739276 AAAGTCTATTGATCTGTTGGTAAATCA 57.261 29.630 0.00 0.00 0.00 2.57
8204 11973 9.567776 TGAAAAGTCTATTGATCTGTTGGTAAA 57.432 29.630 0.00 0.00 0.00 2.01
8205 11974 8.999431 GTGAAAAGTCTATTGATCTGTTGGTAA 58.001 33.333 0.00 0.00 0.00 2.85
8206 11975 8.154203 TGTGAAAAGTCTATTGATCTGTTGGTA 58.846 33.333 0.00 0.00 0.00 3.25
8207 11976 6.998074 TGTGAAAAGTCTATTGATCTGTTGGT 59.002 34.615 0.00 0.00 0.00 3.67
8208 11977 7.439157 TGTGAAAAGTCTATTGATCTGTTGG 57.561 36.000 0.00 0.00 0.00 3.77
8209 11978 7.805071 GGTTGTGAAAAGTCTATTGATCTGTTG 59.195 37.037 0.00 0.00 0.00 3.33
8266 12119 3.921119 TTGTGATTGTTGTGGAGCATC 57.079 42.857 0.00 0.00 0.00 3.91
8337 12202 5.373222 CCATACCCCTCAATTAATCGTTCA 58.627 41.667 0.00 0.00 0.00 3.18
8339 12204 4.142038 GCCATACCCCTCAATTAATCGTT 58.858 43.478 0.00 0.00 0.00 3.85
8347 12212 0.106519 GCACTGCCATACCCCTCAAT 60.107 55.000 0.00 0.00 0.00 2.57
8348 12213 1.207488 AGCACTGCCATACCCCTCAA 61.207 55.000 0.00 0.00 0.00 3.02
8361 12226 9.950496 ATATGAGGGTTCTATTATTTAGCACTG 57.050 33.333 0.00 0.00 0.00 3.66
8430 12314 3.432252 GTCCCACTAACAACATTGACTCG 59.568 47.826 0.00 0.00 0.00 4.18
8491 12377 2.230660 GGGAAGCGCCTAATTAGCAAT 58.769 47.619 2.29 0.00 36.66 3.56
8612 12498 2.498481 AGTGTGCCATCATTTTCATGGG 59.502 45.455 0.00 0.00 41.23 4.00
8683 12569 5.189928 ACATGTTGTCACAACTCCAGTTAA 58.810 37.500 21.23 0.00 36.16 2.01
8770 12716 6.716173 TGTTCAAATTCATTCTGGTCATCTGA 59.284 34.615 0.00 0.00 0.00 3.27
8771 12717 6.805271 GTGTTCAAATTCATTCTGGTCATCTG 59.195 38.462 0.00 0.00 0.00 2.90
8792 12740 6.377146 TCTCCTTTTCTTAACTTGCTTGTGTT 59.623 34.615 0.00 0.00 0.00 3.32
8844 12792 7.651808 TGTTTGTCTCTCTCAATTCATTTTCC 58.348 34.615 0.00 0.00 0.00 3.13
8879 12841 0.601046 CTGCTCGAACTGTGAGGCAA 60.601 55.000 0.00 0.00 33.99 4.52
8911 12873 4.518211 GTGTGAGTACCTACTGTGTGTAGT 59.482 45.833 0.00 0.00 45.36 2.73
8927 12891 4.343526 TGCATTGTTATTTTGGGTGTGAGT 59.656 37.500 0.00 0.00 0.00 3.41
9075 13046 3.253838 TACCAGCTTTGCCCCCGT 61.254 61.111 0.00 0.00 0.00 5.28
9098 13069 2.428544 TGCACAGTGTACCCAAGTTT 57.571 45.000 1.61 0.00 0.00 2.66
9137 13117 9.344772 TGAAAGGTTGAAGCATAAGTAAACTAA 57.655 29.630 0.00 0.00 0.00 2.24
9138 13118 8.911918 TGAAAGGTTGAAGCATAAGTAAACTA 57.088 30.769 0.00 0.00 0.00 2.24
9219 13222 6.774656 AGAGAGCTTTGATTCTTTCAGGAAAA 59.225 34.615 0.00 0.00 35.27 2.29
9242 13245 8.053963 GGAGCATATACCCTACTACTTCATAGA 58.946 40.741 0.00 0.00 34.65 1.98
9337 13340 7.715265 ACTGACATAGTGTTGTAAAGTTCTG 57.285 36.000 0.00 0.00 38.49 3.02
9362 13365 3.523564 ACTGCATTCCCCTACACTGTATT 59.476 43.478 0.00 0.00 0.00 1.89
9364 13367 2.546899 ACTGCATTCCCCTACACTGTA 58.453 47.619 0.00 0.00 0.00 2.74
9365 13368 1.362224 ACTGCATTCCCCTACACTGT 58.638 50.000 0.00 0.00 0.00 3.55
9368 13371 4.947388 TGAAATTACTGCATTCCCCTACAC 59.053 41.667 0.00 0.00 0.00 2.90
9372 13375 6.432403 TTTTTGAAATTACTGCATTCCCCT 57.568 33.333 0.00 0.00 0.00 4.79
9489 13496 1.191647 CTACTTCAACCGCGTTGTCAC 59.808 52.381 16.97 0.00 43.23 3.67
9505 13516 2.677199 TCGTGAAGACGTACGACTACT 58.323 47.619 24.41 6.98 46.20 2.57
9811 13856 2.290745 GCCCTCCCCCTCCTACAT 59.709 66.667 0.00 0.00 0.00 2.29
9831 13876 0.691078 GGGTGCACCATAGAGAGGGA 60.691 60.000 35.78 0.00 39.85 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.