Multiple sequence alignment - TraesCS5A01G042300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G042300 chr5A 100.000 3731 0 0 1 3731 38125219 38128949 0.000000e+00 6890.0
1 TraesCS5A01G042300 chr5A 94.845 97 4 1 3627 3722 27637048 27637144 2.320000e-32 150.0
2 TraesCS5A01G042300 chr5D 91.674 2402 136 34 820 3201 48663740 48666097 0.000000e+00 3269.0
3 TraesCS5A01G042300 chr5D 95.169 828 34 5 1 823 417615020 417615846 0.000000e+00 1303.0
4 TraesCS5A01G042300 chr5D 87.906 339 29 4 3287 3625 48666104 48666430 4.520000e-104 388.0
5 TraesCS5A01G042300 chr5D 93.617 141 8 1 1 141 521174811 521174672 3.780000e-50 209.0
6 TraesCS5A01G042300 chr4B 94.383 819 36 8 1 810 517966589 517965772 0.000000e+00 1249.0
7 TraesCS5A01G042300 chr4B 94.010 818 37 8 1 808 404765404 404764589 0.000000e+00 1229.0
8 TraesCS5A01G042300 chr2B 93.995 816 39 8 1 808 644514141 644513328 0.000000e+00 1227.0
9 TraesCS5A01G042300 chr1A 93.596 812 47 3 1 808 320386787 320385977 0.000000e+00 1206.0
10 TraesCS5A01G042300 chr7D 94.659 674 31 4 139 808 33694840 33695512 0.000000e+00 1040.0
11 TraesCS5A01G042300 chr1D 94.222 675 34 4 139 809 462285592 462286265 0.000000e+00 1026.0
12 TraesCS5A01G042300 chr1D 92.908 141 9 1 1 141 18608285 18608146 1.760000e-48 204.0
13 TraesCS5A01G042300 chr1D 98.851 87 1 0 3630 3716 18163436 18163522 4.990000e-34 156.0
14 TraesCS5A01G042300 chr1D 97.753 89 2 0 3627 3715 198934918 198935006 1.790000e-33 154.0
15 TraesCS5A01G042300 chr2D 93.648 677 37 5 139 810 56312831 56313506 0.000000e+00 1007.0
16 TraesCS5A01G042300 chr2D 95.146 103 4 1 3621 3723 59723543 59723442 1.070000e-35 161.0
17 TraesCS5A01G042300 chr3B 93.630 675 35 6 139 808 42119548 42118877 0.000000e+00 1002.0
18 TraesCS5A01G042300 chr6A 91.693 313 24 2 1902 2213 586997670 586997359 2.060000e-117 433.0
19 TraesCS5A01G042300 chr6A 85.680 412 39 13 2550 2946 549535478 549535884 2.070000e-112 416.0
20 TraesCS5A01G042300 chr6A 89.969 319 29 2 1898 2213 549534162 549534480 3.470000e-110 409.0
21 TraesCS5A01G042300 chr6A 88.108 185 22 0 1500 1684 549532385 549532569 1.740000e-53 220.0
22 TraesCS5A01G042300 chr6A 86.842 190 23 2 1313 1501 549531805 549531993 1.050000e-50 211.0
23 TraesCS5A01G042300 chr6A 85.263 190 26 2 1313 1501 586998999 586998811 1.060000e-45 195.0
24 TraesCS5A01G042300 chr6A 93.651 126 8 0 2426 2551 549535079 549535204 4.920000e-44 189.0
25 TraesCS5A01G042300 chr6A 91.667 120 10 0 2432 2551 586996715 586996596 2.300000e-37 167.0
26 TraesCS5A01G042300 chr6A 80.090 221 36 6 1101 1315 549531372 549531590 1.390000e-34 158.0
27 TraesCS5A01G042300 chr6A 93.204 103 7 0 2250 2352 549534681 549534783 6.450000e-33 152.0
28 TraesCS5A01G042300 chr6A 91.667 108 9 0 2250 2357 586997156 586997049 2.320000e-32 150.0
29 TraesCS5A01G042300 chr6A 93.407 91 6 0 1813 1903 586997849 586997759 6.500000e-28 135.0
30 TraesCS5A01G042300 chr6A 88.372 86 8 2 1688 1772 586998151 586998067 6.590000e-18 102.0
31 TraesCS5A01G042300 chr6D 85.922 412 38 13 2550 2946 403060039 403060445 4.460000e-114 422.0
32 TraesCS5A01G042300 chr6D 89.342 319 31 2 1898 2213 403058723 403059041 7.510000e-107 398.0
33 TraesCS5A01G042300 chr6D 89.189 185 20 0 1500 1684 403056979 403057163 8.060000e-57 231.0
34 TraesCS5A01G042300 chr6D 87.368 190 22 2 1313 1501 403056401 403056589 2.260000e-52 217.0
35 TraesCS5A01G042300 chr6D 93.651 126 8 0 2426 2551 403059640 403059765 4.920000e-44 189.0
36 TraesCS5A01G042300 chr6D 97.802 91 1 1 3625 3715 1548751 1548840 4.990000e-34 156.0
37 TraesCS5A01G042300 chr6D 93.204 103 7 0 2250 2352 403059242 403059344 6.450000e-33 152.0
38 TraesCS5A01G042300 chr6D 93.617 94 5 1 3623 3716 270313037 270313129 5.020000e-29 139.0
39 TraesCS5A01G042300 chr6D 97.500 40 0 1 1775 1813 403058436 403058475 2.400000e-07 67.6
40 TraesCS5A01G042300 chr6B 90.000 320 28 2 1898 2213 603908569 603908888 9.640000e-111 411.0
41 TraesCS5A01G042300 chr6B 83.495 412 43 15 2550 2942 603909929 603910334 9.850000e-96 361.0
42 TraesCS5A01G042300 chr6B 85.789 190 25 2 1313 1501 603906312 603906500 2.270000e-47 200.0
43 TraesCS5A01G042300 chr6B 90.411 146 11 3 1541 1684 178014313 178014169 4.920000e-44 189.0
44 TraesCS5A01G042300 chr6B 92.063 126 10 0 2426 2551 603909448 603909573 1.060000e-40 178.0
45 TraesCS5A01G042300 chr6B 79.913 229 31 13 1101 1315 603905871 603906098 1.790000e-33 154.0
46 TraesCS5A01G042300 chr3D 97.163 141 4 0 1 141 584476225 584476365 4.820000e-59 239.0
47 TraesCS5A01G042300 chr2A 95.035 141 6 1 1 141 446672477 446672616 1.740000e-53 220.0
48 TraesCS5A01G042300 chr2A 96.703 91 3 0 3630 3720 602770029 602770119 6.450000e-33 152.0
49 TraesCS5A01G042300 chr4D 96.703 91 3 0 3627 3717 69190386 69190476 6.450000e-33 152.0
50 TraesCS5A01G042300 chr4A 89.908 109 10 1 3623 3731 48517210 48517317 5.020000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G042300 chr5A 38125219 38128949 3730 False 6890.000000 6890 100.000000 1 3731 1 chr5A.!!$F2 3730
1 TraesCS5A01G042300 chr5D 48663740 48666430 2690 False 1828.500000 3269 89.790000 820 3625 2 chr5D.!!$F2 2805
2 TraesCS5A01G042300 chr5D 417615020 417615846 826 False 1303.000000 1303 95.169000 1 823 1 chr5D.!!$F1 822
3 TraesCS5A01G042300 chr4B 517965772 517966589 817 True 1249.000000 1249 94.383000 1 810 1 chr4B.!!$R2 809
4 TraesCS5A01G042300 chr4B 404764589 404765404 815 True 1229.000000 1229 94.010000 1 808 1 chr4B.!!$R1 807
5 TraesCS5A01G042300 chr2B 644513328 644514141 813 True 1227.000000 1227 93.995000 1 808 1 chr2B.!!$R1 807
6 TraesCS5A01G042300 chr1A 320385977 320386787 810 True 1206.000000 1206 93.596000 1 808 1 chr1A.!!$R1 807
7 TraesCS5A01G042300 chr7D 33694840 33695512 672 False 1040.000000 1040 94.659000 139 808 1 chr7D.!!$F1 669
8 TraesCS5A01G042300 chr1D 462285592 462286265 673 False 1026.000000 1026 94.222000 139 809 1 chr1D.!!$F3 670
9 TraesCS5A01G042300 chr2D 56312831 56313506 675 False 1007.000000 1007 93.648000 139 810 1 chr2D.!!$F1 671
10 TraesCS5A01G042300 chr3B 42118877 42119548 671 True 1002.000000 1002 93.630000 139 808 1 chr3B.!!$R1 669
11 TraesCS5A01G042300 chr6A 549531372 549535884 4512 False 250.714286 416 88.220571 1101 2946 7 chr6A.!!$F1 1845
12 TraesCS5A01G042300 chr6D 403056401 403060445 4044 False 239.514286 422 90.882286 1313 2946 7 chr6D.!!$F3 1633
13 TraesCS5A01G042300 chr6B 603905871 603910334 4463 False 260.800000 411 86.252000 1101 2942 5 chr6B.!!$F1 1841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1002 0.107945 AGACTCGAAGCAAGGCATCC 60.108 55.0 0.0 0.0 0.0 3.51 F
1413 1682 0.463116 TCGCTTTCCTTATTCCGGCC 60.463 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 4149 1.163554 CTTCACCTTCTGCTTCAGCC 58.836 55.0 0.0 0.0 41.18 4.85 R
3260 6228 0.394488 TCTCCTACTCCCTCGCTGTG 60.394 60.0 0.0 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 119 1.295792 GTTGTCGTGGCTGTCAAAGA 58.704 50.000 0.00 0.00 0.00 2.52
281 289 7.066307 AGCATTTTTAATCTTGGGTTGAAGT 57.934 32.000 0.00 0.00 0.00 3.01
299 307 2.718563 AGTTTTCCTGTCAACGGTTGT 58.281 42.857 19.47 0.00 0.00 3.32
406 414 6.518208 AGTAGCAAAACCAAAACACAGTTA 57.482 33.333 0.00 0.00 0.00 2.24
473 482 1.006805 CAAAATTTGCGCCGTGGGA 60.007 52.632 4.18 0.00 0.00 4.37
549 558 4.854784 GAGCTCCGATGCACGCGA 62.855 66.667 15.93 0.00 41.07 5.87
646 657 2.672996 GTTGACCATGGCAGCGGT 60.673 61.111 13.04 10.92 38.56 5.68
691 702 4.743493 CGAGAGGAAGAAGAGAAAAGGAG 58.257 47.826 0.00 0.00 0.00 3.69
692 703 4.461081 CGAGAGGAAGAAGAGAAAAGGAGA 59.539 45.833 0.00 0.00 0.00 3.71
700 715 7.256012 GGAAGAAGAGAAAAGGAGAACTAGTCA 60.256 40.741 0.00 0.00 0.00 3.41
743 758 0.949105 GTTGCTCGTGAATGGGTCGT 60.949 55.000 0.00 0.00 0.00 4.34
775 790 3.692406 GACTGGACCGGCCGAAGT 61.692 66.667 30.73 23.20 40.66 3.01
811 826 1.880186 CCCCAAACGTTTCCCATCG 59.120 57.895 11.37 0.00 0.00 3.84
813 828 1.241315 CCCAAACGTTTCCCATCGCT 61.241 55.000 11.37 0.00 0.00 4.93
814 829 1.444836 CCAAACGTTTCCCATCGCTA 58.555 50.000 11.37 0.00 0.00 4.26
815 830 1.807742 CCAAACGTTTCCCATCGCTAA 59.192 47.619 11.37 0.00 0.00 3.09
816 831 2.422127 CCAAACGTTTCCCATCGCTAAT 59.578 45.455 11.37 0.00 0.00 1.73
817 832 3.486875 CCAAACGTTTCCCATCGCTAATC 60.487 47.826 11.37 0.00 0.00 1.75
818 833 2.981859 ACGTTTCCCATCGCTAATCT 57.018 45.000 0.00 0.00 0.00 2.40
850 865 5.693555 TGCTCTATCGCTAATCTGATGTTTG 59.306 40.000 0.00 0.00 0.00 2.93
854 869 7.896811 TCTATCGCTAATCTGATGTTTGGTAT 58.103 34.615 0.00 0.00 0.00 2.73
858 873 5.625150 GCTAATCTGATGTTTGGTATCCCT 58.375 41.667 0.00 0.00 0.00 4.20
859 874 5.471456 GCTAATCTGATGTTTGGTATCCCTG 59.529 44.000 0.00 0.00 0.00 4.45
879 894 8.368962 TCCCTGTTTCCTTTTTCTTTTCTTTA 57.631 30.769 0.00 0.00 0.00 1.85
880 895 8.817876 TCCCTGTTTCCTTTTTCTTTTCTTTAA 58.182 29.630 0.00 0.00 0.00 1.52
881 896 9.098355 CCCTGTTTCCTTTTTCTTTTCTTTAAG 57.902 33.333 0.00 0.00 0.00 1.85
882 897 9.869757 CCTGTTTCCTTTTTCTTTTCTTTAAGA 57.130 29.630 0.00 0.00 32.50 2.10
915 930 4.340381 TGTAACCTATTTCGAGTCCTAGCC 59.660 45.833 0.00 0.00 0.00 3.93
924 939 0.460459 GAGTCCTAGCCAAACCGAGC 60.460 60.000 0.00 0.00 0.00 5.03
925 940 1.449778 GTCCTAGCCAAACCGAGCC 60.450 63.158 0.00 0.00 0.00 4.70
926 941 2.511600 CCTAGCCAAACCGAGCCG 60.512 66.667 0.00 0.00 0.00 5.52
927 942 3.195698 CTAGCCAAACCGAGCCGC 61.196 66.667 0.00 0.00 0.00 6.53
966 981 1.772819 ATCATCCTGTGCCCGATCCC 61.773 60.000 0.00 0.00 0.00 3.85
987 1002 0.107945 AGACTCGAAGCAAGGCATCC 60.108 55.000 0.00 0.00 0.00 3.51
1019 1034 2.224378 CCATGTACCTGAGCCCATGTAG 60.224 54.545 0.00 0.00 34.30 2.74
1109 1124 2.418669 GGATGAAGGTATCCAGGGGAA 58.581 52.381 0.00 0.00 44.90 3.97
1110 1125 2.373502 GGATGAAGGTATCCAGGGGAAG 59.626 54.545 0.00 0.00 44.90 3.46
1116 1149 1.723288 GTATCCAGGGGAAGGAGGAG 58.277 60.000 0.00 0.00 38.83 3.69
1120 1153 1.383803 CAGGGGAAGGAGGAGGAGG 60.384 68.421 0.00 0.00 0.00 4.30
1152 1185 1.762957 GTGATGGAGGAGATCGGGAAA 59.237 52.381 0.00 0.00 0.00 3.13
1154 1187 2.320781 GATGGAGGAGATCGGGAAAGA 58.679 52.381 0.00 0.00 0.00 2.52
1155 1188 2.247699 TGGAGGAGATCGGGAAAGAA 57.752 50.000 0.00 0.00 0.00 2.52
1168 1201 2.027469 GGGAAAGAAGGGAAGCGTAAGA 60.027 50.000 0.00 0.00 43.02 2.10
1179 1212 2.233305 AGCGTAAGAGGAAGGAGGAA 57.767 50.000 0.00 0.00 43.02 3.36
1209 1257 4.536765 AGAAGGAGAAGAAAAGGCACAAA 58.463 39.130 0.00 0.00 0.00 2.83
1285 1333 2.046023 TCACTGCCAAGGCCATCG 60.046 61.111 5.01 0.00 41.09 3.84
1407 1676 4.254492 GGAAGACACTCGCTTTCCTTATT 58.746 43.478 0.00 0.00 0.00 1.40
1410 1679 2.603560 GACACTCGCTTTCCTTATTCCG 59.396 50.000 0.00 0.00 0.00 4.30
1413 1682 0.463116 TCGCTTTCCTTATTCCGGCC 60.463 55.000 0.00 0.00 0.00 6.13
1419 1688 0.679505 TCCTTATTCCGGCCATCGAG 59.320 55.000 2.24 0.00 42.43 4.04
1467 1736 3.305199 CGAGGAATGGTACCGGAGTTATC 60.305 52.174 9.46 0.00 0.00 1.75
1476 1745 1.345415 ACCGGAGTTATCGTGGTTTGT 59.655 47.619 9.46 0.00 32.57 2.83
1570 2251 3.290710 GGATATGTGATTGGTGGCACTT 58.709 45.455 18.45 2.63 36.05 3.16
1617 2298 2.679837 CGTGGAAGGGATCAATCTGTTG 59.320 50.000 0.00 0.00 36.65 3.33
1710 3597 4.991056 TGCCTTATAATCGATGAAGCTGAC 59.009 41.667 0.00 0.00 0.00 3.51
1731 3618 3.375299 ACCGCATACTTGAGCAGAATTTC 59.625 43.478 0.00 0.00 0.00 2.17
1746 3633 4.569966 CAGAATTTCGAGGAGGACATGAAG 59.430 45.833 0.00 0.00 0.00 3.02
1764 3651 3.944650 TGAAGCAAATATTCAAGCGCCTA 59.055 39.130 2.29 0.00 33.85 3.93
1827 3894 5.528870 ACTAAAAGGGTTGAAGATTTTGCG 58.471 37.500 0.00 0.00 0.00 4.85
1899 3966 6.916440 TGTTGGAGTTGATGATTCTGAATTG 58.084 36.000 4.11 0.00 0.00 2.32
1957 4115 1.077429 ATCCCAAGCGAGGAAAGGC 60.077 57.895 0.00 0.00 36.85 4.35
1985 4143 6.173339 TGGTTCTGTATGCTTTCCTAAGAAG 58.827 40.000 0.00 0.00 32.92 2.85
2088 4249 7.872138 TGAATTTCCTTGGGATAGAGTGTTAT 58.128 34.615 0.00 0.00 0.00 1.89
2126 4287 1.127582 GAAGCAGCAGAAACGCACTAG 59.872 52.381 0.00 0.00 0.00 2.57
2141 4302 4.142227 ACGCACTAGTACATTCTTCCGATT 60.142 41.667 0.00 0.00 0.00 3.34
2303 4632 3.686016 GAGGTGATAAAGGCAAAGGACA 58.314 45.455 0.00 0.00 0.00 4.02
2331 4660 7.360438 GCATTGTTGTTCTTACTACCAGAAGAG 60.360 40.741 0.00 0.00 33.38 2.85
2463 5017 6.100004 TGAGAATTACTTCCTAAAGCAGTCG 58.900 40.000 0.00 0.00 35.81 4.18
2579 5523 6.260870 TGCGGCATCTTTCTGTTTTAATAA 57.739 33.333 0.00 0.00 0.00 1.40
2720 5664 2.002586 CGATGATCGAAGGCAGTTTGT 58.997 47.619 9.62 0.00 43.74 2.83
2749 5693 1.585592 AGGAAGGATGTATCAGGGGGA 59.414 52.381 0.00 0.00 0.00 4.81
2782 5727 4.225942 AGATGCTGGAAGTCACCATCTTTA 59.774 41.667 0.00 0.00 42.90 1.85
2791 5736 7.391554 TGGAAGTCACCATCTTTAATTCTTCTG 59.608 37.037 0.00 0.00 34.77 3.02
2796 5741 9.750125 GTCACCATCTTTAATTCTTCTGTTTTT 57.250 29.630 0.00 0.00 0.00 1.94
2797 5742 9.965824 TCACCATCTTTAATTCTTCTGTTTTTC 57.034 29.630 0.00 0.00 0.00 2.29
2798 5743 9.748708 CACCATCTTTAATTCTTCTGTTTTTCA 57.251 29.630 0.00 0.00 0.00 2.69
2838 5783 6.137794 ACGTTTGGATGTGATTTGTGTTAA 57.862 33.333 0.00 0.00 0.00 2.01
2870 5821 6.934645 TCAGAAAAACCGAGACTGATTTATGT 59.065 34.615 0.00 0.00 33.57 2.29
2871 5822 7.444183 TCAGAAAAACCGAGACTGATTTATGTT 59.556 33.333 0.00 0.00 33.57 2.71
2895 5856 5.746245 TGTTTGGATTCTTAAAACAAGCGTG 59.254 36.000 0.00 0.00 39.99 5.34
2908 5869 7.401484 AAAACAAGCGTGGTTATTACATTTG 57.599 32.000 2.56 0.00 31.75 2.32
2909 5870 5.699097 ACAAGCGTGGTTATTACATTTGT 57.301 34.783 4.26 0.00 0.00 2.83
2914 5875 5.404066 AGCGTGGTTATTACATTTGTTTTGC 59.596 36.000 0.00 0.00 0.00 3.68
2925 5886 4.202161 ACATTTGTTTTGCGGGTACATTGA 60.202 37.500 0.00 0.00 0.00 2.57
2933 5894 1.933853 GCGGGTACATTGATGTCTGTC 59.066 52.381 0.00 0.00 41.97 3.51
2953 5914 4.637977 TGTCTTATGACTTGTGTTGCAACA 59.362 37.500 27.96 27.96 43.29 3.33
2959 5920 0.031178 CTTGTGTTGCAACAGGCTCC 59.969 55.000 31.81 19.71 45.15 4.70
2993 5954 8.988064 GATGAAATCGCCACTCTATAATCTAA 57.012 34.615 0.00 0.00 31.13 2.10
2994 5955 9.593134 GATGAAATCGCCACTCTATAATCTAAT 57.407 33.333 0.00 0.00 31.13 1.73
2995 5956 8.988064 TGAAATCGCCACTCTATAATCTAATC 57.012 34.615 0.00 0.00 0.00 1.75
2996 5957 8.807118 TGAAATCGCCACTCTATAATCTAATCT 58.193 33.333 0.00 0.00 0.00 2.40
2997 5958 8.994429 AAATCGCCACTCTATAATCTAATCTG 57.006 34.615 0.00 0.00 0.00 2.90
2998 5959 5.955488 TCGCCACTCTATAATCTAATCTGC 58.045 41.667 0.00 0.00 0.00 4.26
3011 5972 5.239359 TCTAATCTGCACAATGACAATGC 57.761 39.130 3.42 3.42 39.88 3.56
3014 5975 3.564235 TCTGCACAATGACAATGCTTC 57.436 42.857 10.09 0.00 40.13 3.86
3015 5976 2.229543 TCTGCACAATGACAATGCTTCC 59.770 45.455 10.09 0.00 40.13 3.46
3016 5977 1.068402 TGCACAATGACAATGCTTCCG 60.068 47.619 10.09 0.00 40.13 4.30
3017 5978 1.199789 GCACAATGACAATGCTTCCGA 59.800 47.619 0.00 0.00 36.40 4.55
3018 5979 2.159338 GCACAATGACAATGCTTCCGAT 60.159 45.455 0.00 0.00 36.40 4.18
3019 5980 3.674138 GCACAATGACAATGCTTCCGATT 60.674 43.478 0.00 0.00 36.40 3.34
3020 5981 4.100529 CACAATGACAATGCTTCCGATTC 58.899 43.478 0.00 0.00 0.00 2.52
3021 5982 4.012374 ACAATGACAATGCTTCCGATTCT 58.988 39.130 0.00 0.00 0.00 2.40
3022 5983 4.460382 ACAATGACAATGCTTCCGATTCTT 59.540 37.500 0.00 0.00 0.00 2.52
3023 5984 4.627611 ATGACAATGCTTCCGATTCTTG 57.372 40.909 0.00 0.00 0.00 3.02
3024 5985 3.673902 TGACAATGCTTCCGATTCTTGA 58.326 40.909 0.00 0.00 0.00 3.02
3025 5986 4.264253 TGACAATGCTTCCGATTCTTGAT 58.736 39.130 0.00 0.00 0.00 2.57
3026 5987 4.701651 TGACAATGCTTCCGATTCTTGATT 59.298 37.500 0.00 0.00 0.00 2.57
3027 5988 5.183713 TGACAATGCTTCCGATTCTTGATTT 59.816 36.000 0.00 0.00 0.00 2.17
3028 5989 6.029346 ACAATGCTTCCGATTCTTGATTTT 57.971 33.333 0.00 0.00 0.00 1.82
3029 5990 6.458210 ACAATGCTTCCGATTCTTGATTTTT 58.542 32.000 0.00 0.00 0.00 1.94
3030 5991 6.366877 ACAATGCTTCCGATTCTTGATTTTTG 59.633 34.615 0.00 0.00 0.00 2.44
3037 5998 4.327898 CCGATTCTTGATTTTTGGCACATG 59.672 41.667 0.00 0.00 39.30 3.21
3053 6014 7.946381 TGGCACATGTACCAAAAGAATATAA 57.054 32.000 15.76 0.00 31.46 0.98
3070 6038 8.438676 AGAATATAAAATGTTCCAAGAGGTCG 57.561 34.615 0.00 0.00 35.89 4.79
3080 6048 5.479375 TGTTCCAAGAGGTCGTATAGTTCTT 59.521 40.000 0.00 0.00 35.89 2.52
3089 6057 4.823989 GGTCGTATAGTTCTTGGGTAGCTA 59.176 45.833 0.00 0.00 0.00 3.32
3102 6070 3.245087 TGGGTAGCTAAACTGATTTGCCA 60.245 43.478 0.00 0.00 0.00 4.92
3125 6093 7.416438 GCCACTAGCTTTACATAACTGTCTCTA 60.416 40.741 0.00 0.00 38.99 2.43
3138 6106 9.591792 CATAACTGTCTCTAGATTGATTCAACA 57.408 33.333 0.15 0.00 0.00 3.33
3147 6115 8.613060 TCTAGATTGATTCAACATATTCTGGC 57.387 34.615 0.15 0.00 0.00 4.85
3150 6118 4.149511 TGATTCAACATATTCTGGCCGA 57.850 40.909 0.00 0.00 0.00 5.54
3162 6130 1.518056 CTGGCCGAATGCACTGTGTT 61.518 55.000 9.86 0.00 43.89 3.32
3169 6137 3.554524 CGAATGCACTGTGTTAGGTTTG 58.445 45.455 9.86 0.00 0.00 2.93
3201 6169 2.153645 TCGATGATGTTTGCTTGCTGT 58.846 42.857 0.00 0.00 0.00 4.40
3203 6171 3.004629 TCGATGATGTTTGCTTGCTGTTT 59.995 39.130 0.00 0.00 0.00 2.83
3204 6172 3.737266 CGATGATGTTTGCTTGCTGTTTT 59.263 39.130 0.00 0.00 0.00 2.43
3229 6197 6.426646 TTTTTCTTTTTATTAGCAGCCCCA 57.573 33.333 0.00 0.00 0.00 4.96
3230 6198 6.426646 TTTTCTTTTTATTAGCAGCCCCAA 57.573 33.333 0.00 0.00 0.00 4.12
3231 6199 5.659440 TTCTTTTTATTAGCAGCCCCAAG 57.341 39.130 0.00 0.00 0.00 3.61
3232 6200 4.023291 TCTTTTTATTAGCAGCCCCAAGG 58.977 43.478 0.00 0.00 0.00 3.61
3257 6225 6.821031 ACGAGAGTTTACACAACTAGAGAT 57.179 37.500 0.00 0.00 46.40 2.75
3258 6226 7.216973 ACGAGAGTTTACACAACTAGAGATT 57.783 36.000 0.00 0.00 46.40 2.40
3259 6227 8.332996 ACGAGAGTTTACACAACTAGAGATTA 57.667 34.615 0.00 0.00 46.40 1.75
3260 6228 8.235905 ACGAGAGTTTACACAACTAGAGATTAC 58.764 37.037 0.00 0.00 46.40 1.89
3261 6229 8.235226 CGAGAGTTTACACAACTAGAGATTACA 58.765 37.037 0.00 0.00 0.00 2.41
3262 6230 9.344309 GAGAGTTTACACAACTAGAGATTACAC 57.656 37.037 0.00 0.00 0.00 2.90
3263 6231 8.857098 AGAGTTTACACAACTAGAGATTACACA 58.143 33.333 0.00 0.00 0.00 3.72
3264 6232 9.130312 GAGTTTACACAACTAGAGATTACACAG 57.870 37.037 0.00 0.00 0.00 3.66
3265 6233 7.599245 AGTTTACACAACTAGAGATTACACAGC 59.401 37.037 0.00 0.00 0.00 4.40
3266 6234 4.486090 ACACAACTAGAGATTACACAGCG 58.514 43.478 0.00 0.00 0.00 5.18
3267 6235 4.217767 ACACAACTAGAGATTACACAGCGA 59.782 41.667 0.00 0.00 0.00 4.93
3268 6236 4.795795 CACAACTAGAGATTACACAGCGAG 59.204 45.833 0.00 0.00 0.00 5.03
3269 6237 4.142359 ACAACTAGAGATTACACAGCGAGG 60.142 45.833 0.00 0.00 0.00 4.63
3270 6238 2.952978 ACTAGAGATTACACAGCGAGGG 59.047 50.000 0.00 0.00 0.00 4.30
3271 6239 2.145397 AGAGATTACACAGCGAGGGA 57.855 50.000 0.00 0.00 0.00 4.20
3272 6240 2.028130 AGAGATTACACAGCGAGGGAG 58.972 52.381 0.00 0.00 0.00 4.30
3273 6241 1.751924 GAGATTACACAGCGAGGGAGT 59.248 52.381 0.00 0.00 0.00 3.85
3274 6242 2.950309 GAGATTACACAGCGAGGGAGTA 59.050 50.000 0.00 0.00 0.00 2.59
3275 6243 2.952978 AGATTACACAGCGAGGGAGTAG 59.047 50.000 0.00 0.00 0.00 2.57
3276 6244 1.471119 TTACACAGCGAGGGAGTAGG 58.529 55.000 0.00 0.00 0.00 3.18
3277 6245 0.622136 TACACAGCGAGGGAGTAGGA 59.378 55.000 0.00 0.00 0.00 2.94
3278 6246 0.681564 ACACAGCGAGGGAGTAGGAG 60.682 60.000 0.00 0.00 0.00 3.69
3279 6247 0.394488 CACAGCGAGGGAGTAGGAGA 60.394 60.000 0.00 0.00 0.00 3.71
3280 6248 0.553819 ACAGCGAGGGAGTAGGAGAT 59.446 55.000 0.00 0.00 0.00 2.75
3281 6249 1.063567 ACAGCGAGGGAGTAGGAGATT 60.064 52.381 0.00 0.00 0.00 2.40
3282 6250 2.035632 CAGCGAGGGAGTAGGAGATTT 58.964 52.381 0.00 0.00 0.00 2.17
3283 6251 2.432510 CAGCGAGGGAGTAGGAGATTTT 59.567 50.000 0.00 0.00 0.00 1.82
3284 6252 3.108376 AGCGAGGGAGTAGGAGATTTTT 58.892 45.455 0.00 0.00 0.00 1.94
3364 6332 1.899142 CAGCTATCTAAGGGAGGAGCC 59.101 57.143 0.00 0.00 37.49 4.70
3396 6364 1.222115 GCGCTTTTCGACACCAGACT 61.222 55.000 0.00 0.00 41.67 3.24
3419 6387 3.782250 GCGCACAAGTCGTCATTATCTTG 60.782 47.826 0.30 0.00 41.74 3.02
3471 6439 7.618117 TCTGATACTCTATTTACAACCTGGTGA 59.382 37.037 0.00 0.00 0.00 4.02
3476 6444 5.565509 TCTATTTACAACCTGGTGATGCAA 58.434 37.500 0.00 0.00 0.00 4.08
3477 6445 4.519540 ATTTACAACCTGGTGATGCAAC 57.480 40.909 0.00 0.00 0.00 4.17
3483 6451 1.592400 CCTGGTGATGCAACTGGCTG 61.592 60.000 0.00 0.00 45.15 4.85
3485 6453 1.174078 TGGTGATGCAACTGGCTGTG 61.174 55.000 0.00 0.00 45.15 3.66
3491 6459 5.056480 GTGATGCAACTGGCTGTGTATATA 58.944 41.667 0.00 0.00 45.15 0.86
3493 6461 5.527214 TGATGCAACTGGCTGTGTATATAAC 59.473 40.000 0.00 0.00 45.15 1.89
3495 6463 3.564225 GCAACTGGCTGTGTATATAACCC 59.436 47.826 0.00 0.00 40.25 4.11
3498 6466 3.321111 ACTGGCTGTGTATATAACCCGAG 59.679 47.826 0.00 0.00 0.00 4.63
3505 6473 4.056050 GTGTATATAACCCGAGCTGTTGG 58.944 47.826 0.00 0.00 0.00 3.77
3514 6482 0.445436 CGAGCTGTTGGTGATGAAGC 59.555 55.000 0.00 0.00 0.00 3.86
3515 6483 0.807496 GAGCTGTTGGTGATGAAGCC 59.193 55.000 0.00 0.00 34.35 4.35
3516 6484 0.610232 AGCTGTTGGTGATGAAGCCC 60.610 55.000 0.00 0.00 34.35 5.19
3584 6552 6.766084 GCAGTTAGCTGTAGTTCAATTGTAG 58.234 40.000 8.48 0.00 44.32 2.74
3586 6554 6.368791 CAGTTAGCTGTAGTTCAATTGTAGCA 59.631 38.462 5.13 0.00 37.92 3.49
3591 6559 1.813513 AGTTCAATTGTAGCAGCGCT 58.186 45.000 2.64 2.64 43.41 5.92
3592 6560 1.466167 AGTTCAATTGTAGCAGCGCTG 59.534 47.619 32.83 32.83 40.10 5.18
3624 6592 2.665603 GTCCCTGGACACTCTGCC 59.334 66.667 11.45 0.00 44.02 4.85
3625 6593 2.204034 TCCCTGGACACTCTGCCA 59.796 61.111 0.00 0.00 0.00 4.92
3626 6594 1.229625 TCCCTGGACACTCTGCCAT 60.230 57.895 0.00 0.00 32.89 4.40
3627 6595 0.042581 TCCCTGGACACTCTGCCATA 59.957 55.000 0.00 0.00 32.89 2.74
3628 6596 0.467384 CCCTGGACACTCTGCCATAG 59.533 60.000 0.00 0.00 32.89 2.23
3629 6597 1.198713 CCTGGACACTCTGCCATAGT 58.801 55.000 0.00 0.00 32.89 2.12
3630 6598 2.388735 CCTGGACACTCTGCCATAGTA 58.611 52.381 0.00 0.00 32.89 1.82
3631 6599 2.101582 CCTGGACACTCTGCCATAGTAC 59.898 54.545 0.00 0.00 32.89 2.73
3632 6600 3.027412 CTGGACACTCTGCCATAGTACT 58.973 50.000 0.00 0.00 32.89 2.73
3633 6601 3.024547 TGGACACTCTGCCATAGTACTC 58.975 50.000 0.00 0.00 0.00 2.59
3634 6602 2.362717 GGACACTCTGCCATAGTACTCC 59.637 54.545 0.00 0.00 0.00 3.85
3635 6603 2.362717 GACACTCTGCCATAGTACTCCC 59.637 54.545 0.00 0.00 0.00 4.30
3636 6604 2.023888 ACACTCTGCCATAGTACTCCCT 60.024 50.000 0.00 0.00 0.00 4.20
3637 6605 2.625790 CACTCTGCCATAGTACTCCCTC 59.374 54.545 0.00 0.00 0.00 4.30
3638 6606 2.243810 CTCTGCCATAGTACTCCCTCC 58.756 57.143 0.00 0.00 0.00 4.30
3639 6607 0.962489 CTGCCATAGTACTCCCTCCG 59.038 60.000 0.00 0.00 0.00 4.63
3640 6608 0.260816 TGCCATAGTACTCCCTCCGT 59.739 55.000 0.00 0.00 0.00 4.69
3641 6609 1.342674 TGCCATAGTACTCCCTCCGTT 60.343 52.381 0.00 0.00 0.00 4.44
3642 6610 1.340568 GCCATAGTACTCCCTCCGTTC 59.659 57.143 0.00 0.00 0.00 3.95
3643 6611 1.962100 CCATAGTACTCCCTCCGTTCC 59.038 57.143 0.00 0.00 0.00 3.62
3644 6612 2.662866 CATAGTACTCCCTCCGTTCCA 58.337 52.381 0.00 0.00 0.00 3.53
3645 6613 2.905415 TAGTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
3646 6614 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3647 6615 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
3648 6616 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
3649 6617 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
3650 6618 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3651 6619 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3652 6620 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
3653 6621 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
3654 6622 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
3655 6623 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
3656 6624 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
3657 6625 3.731089 TCCGTTCCAAATTACTTGTCGT 58.269 40.909 0.00 0.00 32.65 4.34
3658 6626 3.495377 TCCGTTCCAAATTACTTGTCGTG 59.505 43.478 0.00 0.00 32.65 4.35
3659 6627 3.364565 CCGTTCCAAATTACTTGTCGTGG 60.365 47.826 0.00 0.00 32.65 4.94
3660 6628 3.249080 CGTTCCAAATTACTTGTCGTGGT 59.751 43.478 0.00 0.00 32.65 4.16
3661 6629 4.260866 CGTTCCAAATTACTTGTCGTGGTT 60.261 41.667 0.00 0.00 32.65 3.67
3662 6630 5.584442 GTTCCAAATTACTTGTCGTGGTTT 58.416 37.500 0.00 0.00 32.65 3.27
3663 6631 5.838531 TCCAAATTACTTGTCGTGGTTTT 57.161 34.783 0.00 0.00 32.65 2.43
3664 6632 6.939132 TCCAAATTACTTGTCGTGGTTTTA 57.061 33.333 0.00 0.00 32.65 1.52
3665 6633 6.961576 TCCAAATTACTTGTCGTGGTTTTAG 58.038 36.000 0.00 0.00 32.65 1.85
3666 6634 6.543100 TCCAAATTACTTGTCGTGGTTTTAGT 59.457 34.615 0.00 0.00 32.65 2.24
3667 6635 7.067251 TCCAAATTACTTGTCGTGGTTTTAGTT 59.933 33.333 0.00 0.00 32.65 2.24
3668 6636 7.377662 CCAAATTACTTGTCGTGGTTTTAGTTC 59.622 37.037 0.00 0.00 32.65 3.01
3669 6637 7.556733 AATTACTTGTCGTGGTTTTAGTTCA 57.443 32.000 0.00 0.00 0.00 3.18
3670 6638 6.981762 TTACTTGTCGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
3671 6639 5.883503 ACTTGTCGTGGTTTTAGTTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
3672 6640 6.445357 ACTTGTCGTGGTTTTAGTTCAAAT 57.555 33.333 0.00 0.00 0.00 2.32
3673 6641 6.859017 ACTTGTCGTGGTTTTAGTTCAAATT 58.141 32.000 0.00 0.00 0.00 1.82
3674 6642 7.317390 ACTTGTCGTGGTTTTAGTTCAAATTT 58.683 30.769 0.00 0.00 0.00 1.82
3675 6643 7.274686 ACTTGTCGTGGTTTTAGTTCAAATTTG 59.725 33.333 12.15 12.15 0.00 2.32
3676 6644 6.853720 TGTCGTGGTTTTAGTTCAAATTTGA 58.146 32.000 16.91 16.91 34.92 2.69
3677 6645 7.313646 TGTCGTGGTTTTAGTTCAAATTTGAA 58.686 30.769 26.01 26.01 44.31 2.69
3690 6658 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
3691 6659 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
3692 6660 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
3693 6661 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
3694 6662 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3695 6663 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3696 6664 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3697 6665 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
3698 6666 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
3699 6667 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
3700 6668 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
3701 6669 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
3702 6670 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
3703 6671 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
3704 6672 3.934068 ACCACGACGAGTAATTTGGAAT 58.066 40.909 0.00 0.00 0.00 3.01
3705 6673 3.682858 ACCACGACGAGTAATTTGGAATG 59.317 43.478 0.00 0.00 0.00 2.67
3706 6674 3.930229 CCACGACGAGTAATTTGGAATGA 59.070 43.478 0.00 0.00 0.00 2.57
3707 6675 4.390603 CCACGACGAGTAATTTGGAATGAA 59.609 41.667 0.00 0.00 0.00 2.57
3708 6676 5.445939 CCACGACGAGTAATTTGGAATGAAG 60.446 44.000 0.00 0.00 0.00 3.02
3709 6677 4.630069 ACGACGAGTAATTTGGAATGAAGG 59.370 41.667 0.00 0.00 0.00 3.46
3710 6678 4.034048 CGACGAGTAATTTGGAATGAAGGG 59.966 45.833 0.00 0.00 0.00 3.95
3711 6679 5.174037 ACGAGTAATTTGGAATGAAGGGA 57.826 39.130 0.00 0.00 0.00 4.20
3712 6680 5.186198 ACGAGTAATTTGGAATGAAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
3713 6681 5.186198 CGAGTAATTTGGAATGAAGGGAGT 58.814 41.667 0.00 0.00 0.00 3.85
3714 6682 6.070424 ACGAGTAATTTGGAATGAAGGGAGTA 60.070 38.462 0.00 0.00 0.00 2.59
3715 6683 6.480320 CGAGTAATTTGGAATGAAGGGAGTAG 59.520 42.308 0.00 0.00 0.00 2.57
3716 6684 7.272144 AGTAATTTGGAATGAAGGGAGTAGT 57.728 36.000 0.00 0.00 0.00 2.73
3717 6685 7.699878 AGTAATTTGGAATGAAGGGAGTAGTT 58.300 34.615 0.00 0.00 0.00 2.24
3718 6686 6.840780 AATTTGGAATGAAGGGAGTAGTTG 57.159 37.500 0.00 0.00 0.00 3.16
3719 6687 4.993705 TTGGAATGAAGGGAGTAGTTGT 57.006 40.909 0.00 0.00 0.00 3.32
3720 6688 4.993705 TGGAATGAAGGGAGTAGTTGTT 57.006 40.909 0.00 0.00 0.00 2.83
3721 6689 6.442541 TTGGAATGAAGGGAGTAGTTGTTA 57.557 37.500 0.00 0.00 0.00 2.41
3722 6690 6.049955 TGGAATGAAGGGAGTAGTTGTTAG 57.950 41.667 0.00 0.00 0.00 2.34
3723 6691 4.876679 GGAATGAAGGGAGTAGTTGTTAGC 59.123 45.833 0.00 0.00 0.00 3.09
3724 6692 5.338463 GGAATGAAGGGAGTAGTTGTTAGCT 60.338 44.000 0.00 0.00 0.00 3.32
3725 6693 5.763876 ATGAAGGGAGTAGTTGTTAGCTT 57.236 39.130 0.00 0.00 0.00 3.74
3726 6694 5.562298 TGAAGGGAGTAGTTGTTAGCTTT 57.438 39.130 0.00 0.00 0.00 3.51
3727 6695 5.305585 TGAAGGGAGTAGTTGTTAGCTTTG 58.694 41.667 0.00 0.00 0.00 2.77
3728 6696 4.287766 AGGGAGTAGTTGTTAGCTTTGG 57.712 45.455 0.00 0.00 0.00 3.28
3729 6697 3.908103 AGGGAGTAGTTGTTAGCTTTGGA 59.092 43.478 0.00 0.00 0.00 3.53
3730 6698 4.001652 GGGAGTAGTTGTTAGCTTTGGAC 58.998 47.826 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 119 6.377429 ACATCATTCATGAAGAAGATGCAACT 59.623 34.615 29.36 17.60 41.01 3.16
213 220 2.363788 AAGCGTTCAGTGCTATCGAA 57.636 45.000 0.00 0.00 43.14 3.71
281 289 2.614983 GCTACAACCGTTGACAGGAAAA 59.385 45.455 18.19 0.00 0.00 2.29
299 307 2.365635 GGAGGCTGGGGAGTGCTA 60.366 66.667 0.00 0.00 0.00 3.49
376 384 7.068348 TGTGTTTTGGTTTTGCTACTACCATAA 59.932 33.333 0.00 0.00 41.31 1.90
515 524 2.907917 CTCCCTACCTCGCCGGAG 60.908 72.222 5.05 0.00 40.14 4.63
646 657 3.627123 CGCATCTCTCTCTTTCTCTCTCA 59.373 47.826 0.00 0.00 0.00 3.27
691 702 2.376109 TGGACCCGAGATGACTAGTTC 58.624 52.381 0.00 0.00 0.00 3.01
692 703 2.526888 TGGACCCGAGATGACTAGTT 57.473 50.000 0.00 0.00 0.00 2.24
700 715 1.115326 TGATGCGATGGACCCGAGAT 61.115 55.000 0.00 0.00 0.00 2.75
811 826 5.519566 CGATAGAGCAATCCATCAGATTAGC 59.480 44.000 0.00 0.00 40.48 3.09
813 828 5.186603 AGCGATAGAGCAATCCATCAGATTA 59.813 40.000 0.00 0.00 40.48 1.75
814 829 4.020396 AGCGATAGAGCAATCCATCAGATT 60.020 41.667 0.00 0.00 42.49 2.40
815 830 3.514706 AGCGATAGAGCAATCCATCAGAT 59.485 43.478 0.00 0.00 40.15 2.90
816 831 2.896044 AGCGATAGAGCAATCCATCAGA 59.104 45.455 0.00 0.00 40.15 3.27
817 832 3.316071 AGCGATAGAGCAATCCATCAG 57.684 47.619 0.00 0.00 40.15 2.90
818 833 4.871933 TTAGCGATAGAGCAATCCATCA 57.128 40.909 0.00 0.00 40.15 3.07
854 869 6.867519 AAGAAAAGAAAAAGGAAACAGGGA 57.132 33.333 0.00 0.00 0.00 4.20
884 899 8.727910 GGACTCGAAATAGGTTACAATTTTCTT 58.272 33.333 0.00 0.00 0.00 2.52
904 919 0.179134 CTCGGTTTGGCTAGGACTCG 60.179 60.000 0.00 0.00 0.00 4.18
966 981 1.396301 GATGCCTTGCTTCGAGTCTTG 59.604 52.381 0.00 0.00 0.00 3.02
992 1007 4.155733 TCAGGTACATGGCGGCGG 62.156 66.667 9.78 0.99 0.00 6.13
1092 1107 1.368203 TCCTTCCCCTGGATACCTTCA 59.632 52.381 0.00 0.00 0.00 3.02
1109 1124 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1110 1125 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
1116 1149 2.166907 TCACATTCTCCTCCTCCTCC 57.833 55.000 0.00 0.00 0.00 4.30
1120 1153 2.368221 CCTCCATCACATTCTCCTCCTC 59.632 54.545 0.00 0.00 0.00 3.71
1152 1185 2.233305 TCCTCTTACGCTTCCCTTCT 57.767 50.000 0.00 0.00 0.00 2.85
1154 1187 1.555533 CCTTCCTCTTACGCTTCCCTT 59.444 52.381 0.00 0.00 0.00 3.95
1155 1188 1.196012 CCTTCCTCTTACGCTTCCCT 58.804 55.000 0.00 0.00 0.00 4.20
1168 1201 1.996291 CTTCCCCTTTTCCTCCTTCCT 59.004 52.381 0.00 0.00 0.00 3.36
1179 1212 5.389520 CTTTTCTTCTCCTTCTTCCCCTTT 58.610 41.667 0.00 0.00 0.00 3.11
1285 1333 2.168728 GGTGGGTGTAGTTCATCTCTCC 59.831 54.545 0.00 0.00 0.00 3.71
1410 1679 1.884926 GTGTAGCAGCTCGATGGCC 60.885 63.158 0.00 0.00 0.00 5.36
1413 1682 1.284657 CCTTGTGTAGCAGCTCGATG 58.715 55.000 0.00 0.00 0.00 3.84
1419 1688 4.152625 CGCGCCTTGTGTAGCAGC 62.153 66.667 0.00 0.00 0.00 5.25
1467 1736 1.503818 CCCTTGTCGGACAAACCACG 61.504 60.000 22.60 11.59 37.69 4.94
1476 1745 2.831894 TAGCGAGCTCCCTTGTCGGA 62.832 60.000 6.15 0.00 34.23 4.55
1531 2212 2.416747 TCCAAGAGTTTGCGAGTGATG 58.583 47.619 0.00 0.00 32.79 3.07
1570 2251 0.901827 TTGGCCTCGCTTCTCATGTA 59.098 50.000 3.32 0.00 0.00 2.29
1606 2287 1.359848 GTCGCGACCAACAGATTGAT 58.640 50.000 28.61 0.00 38.15 2.57
1710 3597 3.544834 CGAAATTCTGCTCAAGTATGCGG 60.545 47.826 0.00 0.00 36.94 5.69
1731 3618 2.099141 TTTGCTTCATGTCCTCCTCG 57.901 50.000 0.00 0.00 0.00 4.63
1746 3633 2.618709 AGGTAGGCGCTTGAATATTTGC 59.381 45.455 7.64 0.00 0.00 3.68
1764 3651 2.147387 AGTTTGCCTGTCCCGAGGT 61.147 57.895 0.00 0.00 35.29 3.85
1827 3894 8.079809 TCTTCATTTTTCCCAAACGTAAGATTC 58.920 33.333 0.00 0.00 43.62 2.52
1899 3966 1.449778 GCCCTCAACGGTAGGCTTC 60.450 63.158 0.00 0.00 42.34 3.86
1957 4115 4.583871 AGGAAAGCATACAGAACCAGAAG 58.416 43.478 0.00 0.00 0.00 2.85
1985 4143 1.712977 CTTCTGCTTCAGCCGCATCC 61.713 60.000 0.00 0.00 41.18 3.51
1991 4149 1.163554 CTTCACCTTCTGCTTCAGCC 58.836 55.000 0.00 0.00 41.18 4.85
2088 4249 3.824133 CTTCAGTTGCCCATGGATATCA 58.176 45.455 15.22 2.44 0.00 2.15
2126 4287 9.013937 CCTCCTTGGAAAATCGGAAGAATGTAC 62.014 44.444 0.00 0.00 40.75 2.90
2190 4353 2.810274 CACATCAGGAATATCAAGCCCG 59.190 50.000 0.00 0.00 0.00 6.13
2303 4632 6.237901 TCTGGTAGTAAGAACAACAATGCAT 58.762 36.000 0.00 0.00 0.00 3.96
2331 4660 6.037423 CGTAGGTAAATGAGCAACTTCATC 57.963 41.667 0.00 0.00 36.81 2.92
2390 4874 4.128643 CAGTTTTGGCACATGTTTTCCAT 58.871 39.130 10.90 0.00 39.30 3.41
2579 5523 4.019231 GGTTCAGATTCACTTTAGGAGGGT 60.019 45.833 0.00 0.00 0.00 4.34
2697 5641 1.227350 CTGCCTTCGATCATCGCCA 60.227 57.895 0.80 0.00 40.21 5.69
2720 5664 7.676043 CCCTGATACATCCTTCCTAGAATCTTA 59.324 40.741 0.00 0.00 0.00 2.10
2749 5693 6.541641 GTGACTTCCAGCATCTGATCTTAAAT 59.458 38.462 0.00 0.00 32.44 1.40
2809 5754 8.181573 ACACAAATCACATCCAAACGTAATATC 58.818 33.333 0.00 0.00 0.00 1.63
2816 5761 6.205784 ACTTAACACAAATCACATCCAAACG 58.794 36.000 0.00 0.00 0.00 3.60
2832 5777 7.687445 TCGGTTTTTCTGAAACTACTTAACAC 58.313 34.615 1.58 0.00 0.00 3.32
2838 5783 5.753921 CAGTCTCGGTTTTTCTGAAACTACT 59.246 40.000 1.58 0.00 31.65 2.57
2870 5821 6.254589 CACGCTTGTTTTAAGAATCCAAACAA 59.745 34.615 12.32 12.32 44.32 2.83
2871 5822 5.746245 CACGCTTGTTTTAAGAATCCAAACA 59.254 36.000 0.00 0.00 38.37 2.83
2895 5856 5.231702 ACCCGCAAAACAAATGTAATAACC 58.768 37.500 0.00 0.00 0.00 2.85
2908 5869 3.190535 AGACATCAATGTACCCGCAAAAC 59.809 43.478 0.00 0.00 41.95 2.43
2909 5870 3.190327 CAGACATCAATGTACCCGCAAAA 59.810 43.478 0.00 0.00 41.95 2.44
2914 5875 3.526931 AGACAGACATCAATGTACCCG 57.473 47.619 0.00 0.00 41.95 5.28
2933 5894 4.539870 CCTGTTGCAACACAAGTCATAAG 58.460 43.478 27.96 13.77 39.50 1.73
2959 5920 1.651138 GGCGATTTCATCTATCGAGCG 59.349 52.381 9.20 0.00 45.79 5.03
2964 5925 9.243637 GATTATAGAGTGGCGATTTCATCTATC 57.756 37.037 0.00 0.00 33.33 2.08
2973 5934 7.038659 GCAGATTAGATTATAGAGTGGCGATT 58.961 38.462 0.00 0.00 0.00 3.34
2977 5938 6.459066 TGTGCAGATTAGATTATAGAGTGGC 58.541 40.000 0.00 0.00 0.00 5.01
2979 5940 9.702494 TCATTGTGCAGATTAGATTATAGAGTG 57.298 33.333 0.00 0.00 0.00 3.51
2986 5947 7.283807 AGCATTGTCATTGTGCAGATTAGATTA 59.716 33.333 0.00 0.00 41.19 1.75
2990 5951 5.244785 AGCATTGTCATTGTGCAGATTAG 57.755 39.130 0.00 0.00 41.19 1.73
2991 5952 5.393352 GGAAGCATTGTCATTGTGCAGATTA 60.393 40.000 0.00 0.00 41.19 1.75
2992 5953 4.491676 GAAGCATTGTCATTGTGCAGATT 58.508 39.130 0.00 0.00 41.19 2.40
2993 5954 3.119245 GGAAGCATTGTCATTGTGCAGAT 60.119 43.478 0.00 0.00 41.19 2.90
2994 5955 2.229543 GGAAGCATTGTCATTGTGCAGA 59.770 45.455 0.00 0.00 41.19 4.26
2995 5956 2.602878 GGAAGCATTGTCATTGTGCAG 58.397 47.619 0.00 0.00 41.19 4.41
2996 5957 1.068402 CGGAAGCATTGTCATTGTGCA 60.068 47.619 7.75 0.00 41.19 4.57
2997 5958 1.199789 TCGGAAGCATTGTCATTGTGC 59.800 47.619 0.00 0.00 39.10 4.57
2998 5959 3.770263 ATCGGAAGCATTGTCATTGTG 57.230 42.857 0.00 0.00 0.00 3.33
3011 5972 4.622740 GTGCCAAAAATCAAGAATCGGAAG 59.377 41.667 0.00 0.00 0.00 3.46
3014 5975 3.911868 TGTGCCAAAAATCAAGAATCGG 58.088 40.909 0.00 0.00 0.00 4.18
3015 5976 4.925054 ACATGTGCCAAAAATCAAGAATCG 59.075 37.500 0.00 0.00 0.00 3.34
3016 5977 6.311200 GGTACATGTGCCAAAAATCAAGAATC 59.689 38.462 26.17 0.00 35.28 2.52
3017 5978 6.165577 GGTACATGTGCCAAAAATCAAGAAT 58.834 36.000 26.17 0.00 35.28 2.40
3018 5979 5.069648 TGGTACATGTGCCAAAAATCAAGAA 59.930 36.000 30.62 5.21 42.40 2.52
3019 5980 4.586421 TGGTACATGTGCCAAAAATCAAGA 59.414 37.500 30.62 5.74 42.40 3.02
3020 5981 4.880759 TGGTACATGTGCCAAAAATCAAG 58.119 39.130 30.62 0.00 42.40 3.02
3021 5982 4.944619 TGGTACATGTGCCAAAAATCAA 57.055 36.364 30.62 7.21 42.40 2.57
3029 5990 7.946381 TTATATTCTTTTGGTACATGTGCCA 57.054 32.000 29.34 29.34 43.66 4.92
3030 5991 9.816354 ATTTTATATTCTTTTGGTACATGTGCC 57.184 29.630 24.66 24.66 39.30 5.01
3046 6007 8.209917 ACGACCTCTTGGAACATTTTATATTC 57.790 34.615 0.00 0.00 39.30 1.75
3047 6008 9.847224 ATACGACCTCTTGGAACATTTTATATT 57.153 29.630 0.00 0.00 39.30 1.28
3053 6014 6.295719 ACTATACGACCTCTTGGAACATTT 57.704 37.500 0.00 0.00 39.30 2.32
3069 6037 6.696148 CAGTTTAGCTACCCAAGAACTATACG 59.304 42.308 6.04 0.00 0.00 3.06
3070 6038 7.779073 TCAGTTTAGCTACCCAAGAACTATAC 58.221 38.462 6.04 0.00 0.00 1.47
3080 6048 3.245087 TGGCAAATCAGTTTAGCTACCCA 60.245 43.478 0.00 0.00 0.00 4.51
3089 6057 5.534654 TGTAAAGCTAGTGGCAAATCAGTTT 59.465 36.000 0.00 0.00 44.79 2.66
3102 6070 9.635404 ATCTAGAGACAGTTATGTAAAGCTAGT 57.365 33.333 0.00 0.00 40.68 2.57
3125 6093 5.240183 CGGCCAGAATATGTTGAATCAATCT 59.760 40.000 2.24 0.00 0.00 2.40
3147 6115 1.808411 ACCTAACACAGTGCATTCGG 58.192 50.000 0.00 0.00 0.00 4.30
3150 6118 7.466746 AATATCAAACCTAACACAGTGCATT 57.533 32.000 0.00 0.00 0.00 3.56
3169 6137 9.669353 AGCAAACATCATCGATAACAAAATATC 57.331 29.630 0.00 0.00 0.00 1.63
3181 6149 2.153645 ACAGCAAGCAAACATCATCGA 58.846 42.857 0.00 0.00 0.00 3.59
3182 6150 2.624316 ACAGCAAGCAAACATCATCG 57.376 45.000 0.00 0.00 0.00 3.84
3183 6151 5.662211 AAAAACAGCAAGCAAACATCATC 57.338 34.783 0.00 0.00 0.00 2.92
3206 6174 6.426646 TGGGGCTGCTAATAAAAAGAAAAA 57.573 33.333 0.00 0.00 0.00 1.94
3207 6175 6.426646 TTGGGGCTGCTAATAAAAAGAAAA 57.573 33.333 0.00 0.00 0.00 2.29
3208 6176 5.046663 CCTTGGGGCTGCTAATAAAAAGAAA 60.047 40.000 0.00 0.00 0.00 2.52
3209 6177 4.466015 CCTTGGGGCTGCTAATAAAAAGAA 59.534 41.667 0.00 0.00 0.00 2.52
3210 6178 4.023291 CCTTGGGGCTGCTAATAAAAAGA 58.977 43.478 0.00 0.00 0.00 2.52
3211 6179 3.132824 CCCTTGGGGCTGCTAATAAAAAG 59.867 47.826 0.00 0.00 35.35 2.27
3212 6180 3.103742 CCCTTGGGGCTGCTAATAAAAA 58.896 45.455 0.00 0.00 35.35 1.94
3213 6181 2.313342 TCCCTTGGGGCTGCTAATAAAA 59.687 45.455 5.78 0.00 43.94 1.52
3214 6182 1.926665 TCCCTTGGGGCTGCTAATAAA 59.073 47.619 5.78 0.00 43.94 1.40
3215 6183 1.214424 GTCCCTTGGGGCTGCTAATAA 59.786 52.381 2.51 0.00 43.94 1.40
3216 6184 0.843984 GTCCCTTGGGGCTGCTAATA 59.156 55.000 2.51 0.00 43.94 0.98
3217 6185 1.615262 GTCCCTTGGGGCTGCTAAT 59.385 57.895 2.51 0.00 43.94 1.73
3218 6186 2.966732 CGTCCCTTGGGGCTGCTAA 61.967 63.158 8.80 0.00 43.94 3.09
3219 6187 3.399181 CGTCCCTTGGGGCTGCTA 61.399 66.667 8.80 0.00 43.94 3.49
3221 6189 4.785453 CTCGTCCCTTGGGGCTGC 62.785 72.222 8.80 0.00 43.94 5.25
3222 6190 3.003173 TCTCGTCCCTTGGGGCTG 61.003 66.667 8.80 2.57 43.94 4.85
3223 6191 2.685380 CTCTCGTCCCTTGGGGCT 60.685 66.667 8.80 0.00 43.94 5.19
3224 6192 2.125766 AAACTCTCGTCCCTTGGGGC 62.126 60.000 5.78 2.54 43.94 5.80
3225 6193 1.066358 GTAAACTCTCGTCCCTTGGGG 60.066 57.143 5.78 0.00 46.11 4.96
3226 6194 1.621814 TGTAAACTCTCGTCCCTTGGG 59.378 52.381 0.00 0.00 0.00 4.12
3227 6195 2.036733 TGTGTAAACTCTCGTCCCTTGG 59.963 50.000 0.00 0.00 0.00 3.61
3228 6196 3.380479 TGTGTAAACTCTCGTCCCTTG 57.620 47.619 0.00 0.00 0.00 3.61
3229 6197 3.387050 AGTTGTGTAAACTCTCGTCCCTT 59.613 43.478 0.00 0.00 0.00 3.95
3230 6198 2.963782 AGTTGTGTAAACTCTCGTCCCT 59.036 45.455 0.00 0.00 0.00 4.20
3231 6199 3.382048 AGTTGTGTAAACTCTCGTCCC 57.618 47.619 0.00 0.00 0.00 4.46
3232 6200 5.180868 TCTCTAGTTGTGTAAACTCTCGTCC 59.819 44.000 0.00 0.00 0.00 4.79
3233 6201 6.238610 TCTCTAGTTGTGTAAACTCTCGTC 57.761 41.667 0.00 0.00 0.00 4.20
3234 6202 6.821031 ATCTCTAGTTGTGTAAACTCTCGT 57.179 37.500 0.00 0.00 0.00 4.18
3235 6203 8.235226 TGTAATCTCTAGTTGTGTAAACTCTCG 58.765 37.037 0.00 0.00 0.00 4.04
3236 6204 9.344309 GTGTAATCTCTAGTTGTGTAAACTCTC 57.656 37.037 0.00 0.00 0.00 3.20
3237 6205 8.857098 TGTGTAATCTCTAGTTGTGTAAACTCT 58.143 33.333 0.00 0.00 0.00 3.24
3238 6206 9.130312 CTGTGTAATCTCTAGTTGTGTAAACTC 57.870 37.037 0.00 0.00 0.00 3.01
3239 6207 7.599245 GCTGTGTAATCTCTAGTTGTGTAAACT 59.401 37.037 0.00 0.00 0.00 2.66
3240 6208 7.410513 CGCTGTGTAATCTCTAGTTGTGTAAAC 60.411 40.741 0.00 0.00 0.00 2.01
3241 6209 6.584942 CGCTGTGTAATCTCTAGTTGTGTAAA 59.415 38.462 0.00 0.00 0.00 2.01
3242 6210 6.072342 TCGCTGTGTAATCTCTAGTTGTGTAA 60.072 38.462 0.00 0.00 0.00 2.41
3243 6211 5.413523 TCGCTGTGTAATCTCTAGTTGTGTA 59.586 40.000 0.00 0.00 0.00 2.90
3244 6212 4.217767 TCGCTGTGTAATCTCTAGTTGTGT 59.782 41.667 0.00 0.00 0.00 3.72
3245 6213 4.733850 TCGCTGTGTAATCTCTAGTTGTG 58.266 43.478 0.00 0.00 0.00 3.33
3246 6214 4.142359 CCTCGCTGTGTAATCTCTAGTTGT 60.142 45.833 0.00 0.00 0.00 3.32
3247 6215 4.355437 CCTCGCTGTGTAATCTCTAGTTG 58.645 47.826 0.00 0.00 0.00 3.16
3248 6216 3.381908 CCCTCGCTGTGTAATCTCTAGTT 59.618 47.826 0.00 0.00 0.00 2.24
3249 6217 2.952978 CCCTCGCTGTGTAATCTCTAGT 59.047 50.000 0.00 0.00 0.00 2.57
3250 6218 3.215151 TCCCTCGCTGTGTAATCTCTAG 58.785 50.000 0.00 0.00 0.00 2.43
3251 6219 3.215151 CTCCCTCGCTGTGTAATCTCTA 58.785 50.000 0.00 0.00 0.00 2.43
3252 6220 2.028130 CTCCCTCGCTGTGTAATCTCT 58.972 52.381 0.00 0.00 0.00 3.10
3253 6221 1.751924 ACTCCCTCGCTGTGTAATCTC 59.248 52.381 0.00 0.00 0.00 2.75
3254 6222 1.853963 ACTCCCTCGCTGTGTAATCT 58.146 50.000 0.00 0.00 0.00 2.40
3255 6223 2.034812 CCTACTCCCTCGCTGTGTAATC 59.965 54.545 0.00 0.00 0.00 1.75
3256 6224 2.032620 CCTACTCCCTCGCTGTGTAAT 58.967 52.381 0.00 0.00 0.00 1.89
3257 6225 1.005097 TCCTACTCCCTCGCTGTGTAA 59.995 52.381 0.00 0.00 0.00 2.41
3258 6226 0.622136 TCCTACTCCCTCGCTGTGTA 59.378 55.000 0.00 0.00 0.00 2.90
3259 6227 0.681564 CTCCTACTCCCTCGCTGTGT 60.682 60.000 0.00 0.00 0.00 3.72
3260 6228 0.394488 TCTCCTACTCCCTCGCTGTG 60.394 60.000 0.00 0.00 0.00 3.66
3261 6229 0.553819 ATCTCCTACTCCCTCGCTGT 59.446 55.000 0.00 0.00 0.00 4.40
3262 6230 1.698506 AATCTCCTACTCCCTCGCTG 58.301 55.000 0.00 0.00 0.00 5.18
3263 6231 2.463047 AAATCTCCTACTCCCTCGCT 57.537 50.000 0.00 0.00 0.00 4.93
3264 6232 3.545366 AAAAATCTCCTACTCCCTCGC 57.455 47.619 0.00 0.00 0.00 5.03
3284 6252 8.780249 GCCTGACAAAAACTGTAGATACTTTAA 58.220 33.333 0.00 0.00 38.84 1.52
3285 6253 8.154856 AGCCTGACAAAAACTGTAGATACTTTA 58.845 33.333 0.00 0.00 38.84 1.85
3301 6269 1.059584 TCAGTCCCCAGCCTGACAAA 61.060 55.000 0.00 0.00 32.93 2.83
3320 6288 2.439507 TGTTGCCTCTTCTTCCTGTCTT 59.560 45.455 0.00 0.00 0.00 3.01
3322 6290 2.550830 TGTTGCCTCTTCTTCCTGTC 57.449 50.000 0.00 0.00 0.00 3.51
3396 6364 1.658596 GATAATGACGACTTGTGCGCA 59.341 47.619 5.66 5.66 0.00 6.09
3419 6387 9.965824 AATAACATATAACCAAGTTGCATTAGC 57.034 29.630 0.00 0.00 42.57 3.09
3448 6416 7.171678 GCATCACCAGGTTGTAAATAGAGTATC 59.828 40.741 0.00 0.00 0.00 2.24
3454 6422 5.415701 AGTTGCATCACCAGGTTGTAAATAG 59.584 40.000 0.00 0.00 0.00 1.73
3462 6430 1.181098 GCCAGTTGCATCACCAGGTT 61.181 55.000 0.00 0.00 40.77 3.50
3465 6433 0.892358 ACAGCCAGTTGCATCACCAG 60.892 55.000 0.00 0.00 44.83 4.00
3471 6439 4.821805 GGTTATATACACAGCCAGTTGCAT 59.178 41.667 0.00 0.00 44.83 3.96
3476 6444 3.302161 TCGGGTTATATACACAGCCAGT 58.698 45.455 2.86 0.00 0.00 4.00
3477 6445 3.861131 GCTCGGGTTATATACACAGCCAG 60.861 52.174 2.86 1.34 31.92 4.85
3483 6451 4.056050 CCAACAGCTCGGGTTATATACAC 58.944 47.826 0.00 0.00 0.00 2.90
3485 6453 4.056050 CACCAACAGCTCGGGTTATATAC 58.944 47.826 0.00 0.00 31.03 1.47
3491 6459 0.606401 CATCACCAACAGCTCGGGTT 60.606 55.000 0.00 0.00 31.03 4.11
3493 6461 0.321564 TTCATCACCAACAGCTCGGG 60.322 55.000 0.00 0.00 0.00 5.14
3495 6463 0.445436 GCTTCATCACCAACAGCTCG 59.555 55.000 0.00 0.00 0.00 5.03
3498 6466 0.895100 TGGGCTTCATCACCAACAGC 60.895 55.000 0.00 0.00 0.00 4.40
3505 6473 4.344237 CCCCTTGGGCTTCATCAC 57.656 61.111 0.00 0.00 35.35 3.06
3515 6483 5.775195 AGTTGATTCTTTTCTTACCCCTTGG 59.225 40.000 0.00 0.00 37.80 3.61
3516 6484 6.901081 AGTTGATTCTTTTCTTACCCCTTG 57.099 37.500 0.00 0.00 0.00 3.61
3577 6545 0.798776 GACACAGCGCTGCTACAATT 59.201 50.000 36.28 13.25 36.40 2.32
3578 6546 0.036952 AGACACAGCGCTGCTACAAT 60.037 50.000 36.28 14.06 36.40 2.71
3584 6552 1.224069 TGAAGAAGACACAGCGCTGC 61.224 55.000 36.28 20.66 0.00 5.25
3586 6554 0.390860 ACTGAAGAAGACACAGCGCT 59.609 50.000 2.64 2.64 35.38 5.92
3591 6559 2.771943 AGGGACAACTGAAGAAGACACA 59.228 45.455 0.00 0.00 0.00 3.72
3592 6560 3.134458 CAGGGACAACTGAAGAAGACAC 58.866 50.000 0.00 0.00 40.97 3.67
3618 6586 2.243810 GGAGGGAGTACTATGGCAGAG 58.756 57.143 7.75 7.75 0.00 3.35
3620 6588 0.962489 CGGAGGGAGTACTATGGCAG 59.038 60.000 0.00 0.00 0.00 4.85
3621 6589 0.260816 ACGGAGGGAGTACTATGGCA 59.739 55.000 0.00 0.00 0.00 4.92
3622 6590 1.340568 GAACGGAGGGAGTACTATGGC 59.659 57.143 0.00 0.00 0.00 4.40
3624 6592 2.662866 TGGAACGGAGGGAGTACTATG 58.337 52.381 0.00 0.00 0.00 2.23
3625 6593 3.393426 TTGGAACGGAGGGAGTACTAT 57.607 47.619 0.00 0.00 0.00 2.12
3626 6594 2.905415 TTGGAACGGAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
3627 6595 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
3628 6596 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
3629 6597 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
3630 6598 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
3631 6599 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
3632 6600 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
3633 6601 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
3634 6602 3.124636 CGACAAGTAATTTGGAACGGAGG 59.875 47.826 0.00 0.00 41.25 4.30
3635 6603 3.744426 ACGACAAGTAATTTGGAACGGAG 59.256 43.478 0.00 0.00 41.25 4.63
3636 6604 3.495377 CACGACAAGTAATTTGGAACGGA 59.505 43.478 0.00 0.00 41.25 4.69
3637 6605 3.364565 CCACGACAAGTAATTTGGAACGG 60.365 47.826 0.00 0.00 41.25 4.44
3638 6606 3.249080 ACCACGACAAGTAATTTGGAACG 59.751 43.478 0.00 0.00 41.25 3.95
3639 6607 4.823790 ACCACGACAAGTAATTTGGAAC 57.176 40.909 0.00 0.00 41.25 3.62
3640 6608 5.838531 AAACCACGACAAGTAATTTGGAA 57.161 34.783 0.00 0.00 41.25 3.53
3641 6609 5.838531 AAAACCACGACAAGTAATTTGGA 57.161 34.783 0.00 0.00 41.25 3.53
3642 6610 6.731164 ACTAAAACCACGACAAGTAATTTGG 58.269 36.000 0.00 0.00 41.25 3.28
3643 6611 7.911205 TGAACTAAAACCACGACAAGTAATTTG 59.089 33.333 0.00 0.00 42.68 2.32
3644 6612 7.987649 TGAACTAAAACCACGACAAGTAATTT 58.012 30.769 0.00 0.00 0.00 1.82
3645 6613 7.556733 TGAACTAAAACCACGACAAGTAATT 57.443 32.000 0.00 0.00 0.00 1.40
3646 6614 7.556733 TTGAACTAAAACCACGACAAGTAAT 57.443 32.000 0.00 0.00 0.00 1.89
3647 6615 6.981762 TTGAACTAAAACCACGACAAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
3648 6616 6.981762 TTTGAACTAAAACCACGACAAGTA 57.018 33.333 0.00 0.00 0.00 2.24
3649 6617 5.883503 TTTGAACTAAAACCACGACAAGT 57.116 34.783 0.00 0.00 0.00 3.16
3650 6618 7.486551 TCAAATTTGAACTAAAACCACGACAAG 59.513 33.333 18.45 0.00 33.55 3.16
3651 6619 7.313646 TCAAATTTGAACTAAAACCACGACAA 58.686 30.769 18.45 0.00 33.55 3.18
3652 6620 6.853720 TCAAATTTGAACTAAAACCACGACA 58.146 32.000 18.45 0.00 33.55 4.35
3653 6621 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
3666 6634 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
3667 6635 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
3668 6636 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
3669 6637 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
3670 6638 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
3671 6639 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
3672 6640 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
3673 6641 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3674 6642 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3675 6643 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
3676 6644 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
3677 6645 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
3678 6646 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
3679 6647 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
3680 6648 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
3681 6649 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
3682 6650 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
3683 6651 3.389925 TTCCAAATTACTCGTCGTGGT 57.610 42.857 0.00 0.00 0.00 4.16
3684 6652 3.930229 TCATTCCAAATTACTCGTCGTGG 59.070 43.478 0.00 0.00 0.00 4.94
3685 6653 5.445939 CCTTCATTCCAAATTACTCGTCGTG 60.446 44.000 0.00 0.00 0.00 4.35
3686 6654 4.630069 CCTTCATTCCAAATTACTCGTCGT 59.370 41.667 0.00 0.00 0.00 4.34
3687 6655 4.034048 CCCTTCATTCCAAATTACTCGTCG 59.966 45.833 0.00 0.00 0.00 5.12
3688 6656 5.183228 TCCCTTCATTCCAAATTACTCGTC 58.817 41.667 0.00 0.00 0.00 4.20
3689 6657 5.174037 TCCCTTCATTCCAAATTACTCGT 57.826 39.130 0.00 0.00 0.00 4.18
3690 6658 5.186198 ACTCCCTTCATTCCAAATTACTCG 58.814 41.667 0.00 0.00 0.00 4.18
3691 6659 7.339482 ACTACTCCCTTCATTCCAAATTACTC 58.661 38.462 0.00 0.00 0.00 2.59
3692 6660 7.272144 ACTACTCCCTTCATTCCAAATTACT 57.728 36.000 0.00 0.00 0.00 2.24
3693 6661 7.393515 ACAACTACTCCCTTCATTCCAAATTAC 59.606 37.037 0.00 0.00 0.00 1.89
3694 6662 7.466804 ACAACTACTCCCTTCATTCCAAATTA 58.533 34.615 0.00 0.00 0.00 1.40
3695 6663 6.314917 ACAACTACTCCCTTCATTCCAAATT 58.685 36.000 0.00 0.00 0.00 1.82
3696 6664 5.892348 ACAACTACTCCCTTCATTCCAAAT 58.108 37.500 0.00 0.00 0.00 2.32
3697 6665 5.319043 ACAACTACTCCCTTCATTCCAAA 57.681 39.130 0.00 0.00 0.00 3.28
3698 6666 4.993705 ACAACTACTCCCTTCATTCCAA 57.006 40.909 0.00 0.00 0.00 3.53
3699 6667 4.993705 AACAACTACTCCCTTCATTCCA 57.006 40.909 0.00 0.00 0.00 3.53
3700 6668 4.876679 GCTAACAACTACTCCCTTCATTCC 59.123 45.833 0.00 0.00 0.00 3.01
3701 6669 5.735766 AGCTAACAACTACTCCCTTCATTC 58.264 41.667 0.00 0.00 0.00 2.67
3702 6670 5.763876 AGCTAACAACTACTCCCTTCATT 57.236 39.130 0.00 0.00 0.00 2.57
3703 6671 5.763876 AAGCTAACAACTACTCCCTTCAT 57.236 39.130 0.00 0.00 0.00 2.57
3704 6672 5.305585 CAAAGCTAACAACTACTCCCTTCA 58.694 41.667 0.00 0.00 0.00 3.02
3705 6673 4.695928 CCAAAGCTAACAACTACTCCCTTC 59.304 45.833 0.00 0.00 0.00 3.46
3706 6674 4.349930 TCCAAAGCTAACAACTACTCCCTT 59.650 41.667 0.00 0.00 0.00 3.95
3707 6675 3.908103 TCCAAAGCTAACAACTACTCCCT 59.092 43.478 0.00 0.00 0.00 4.20
3708 6676 4.001652 GTCCAAAGCTAACAACTACTCCC 58.998 47.826 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.