Multiple sequence alignment - TraesCS5A01G042200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G042200 chr5A 100.000 7757 0 0 1001 8757 37981549 37973793 0.000000e+00 14325.0
1 TraesCS5A01G042200 chr5A 90.708 2486 177 26 1977 4424 128440358 128437889 0.000000e+00 3262.0
2 TraesCS5A01G042200 chr5A 86.177 1729 143 50 6241 7918 128431999 128430316 0.000000e+00 1781.0
3 TraesCS5A01G042200 chr5A 90.625 1056 79 14 4763 5810 128433806 128432763 0.000000e+00 1384.0
4 TraesCS5A01G042200 chr5A 100.000 582 0 0 1 582 37982549 37981968 0.000000e+00 1075.0
5 TraesCS5A01G042200 chr5A 84.195 1006 110 24 1003 1983 128441369 128440388 0.000000e+00 931.0
6 TraesCS5A01G042200 chr5A 86.441 295 40 0 5456 5750 343202990 343203284 3.050000e-84 324.0
7 TraesCS5A01G042200 chr5A 91.061 179 12 3 4486 4661 128437036 128436859 1.140000e-58 239.0
8 TraesCS5A01G042200 chr5A 90.066 151 15 0 5890 6040 128432423 128432273 6.940000e-46 196.0
9 TraesCS5A01G042200 chr5A 94.286 105 6 0 4656 4760 128433996 128433892 2.530000e-35 161.0
10 TraesCS5A01G042200 chr5A 92.188 64 5 0 5935 5998 343203386 343203449 3.370000e-14 91.6
11 TraesCS5A01G042200 chr5B 93.793 6412 300 48 1308 7688 50516985 50510641 0.000000e+00 9546.0
12 TraesCS5A01G042200 chr5B 91.888 2108 158 3 1977 4071 130934946 130932839 0.000000e+00 2933.0
13 TraesCS5A01G042200 chr5B 84.226 1680 160 58 6329 7960 130916291 130914669 0.000000e+00 1537.0
14 TraesCS5A01G042200 chr5B 89.065 1134 74 15 4656 5765 130918388 130917281 0.000000e+00 1362.0
15 TraesCS5A01G042200 chr5B 83.226 620 62 22 4073 4661 130931025 130930417 1.670000e-146 531.0
16 TraesCS5A01G042200 chr5B 97.849 186 4 0 8572 8757 225515537 225515352 1.100000e-83 322.0
17 TraesCS5A01G042200 chr5B 86.102 295 41 0 5456 5750 454124422 454124716 1.420000e-82 318.0
18 TraesCS5A01G042200 chr5B 86.977 215 16 7 1028 1233 50517289 50517078 1.900000e-56 231.0
19 TraesCS5A01G042200 chr5B 85.909 220 7 10 363 581 50517614 50517418 6.890000e-51 213.0
20 TraesCS5A01G042200 chr5B 89.474 133 12 1 6046 6178 98663178 98663308 5.440000e-37 167.0
21 TraesCS5A01G042200 chr5B 95.652 69 3 0 8128 8196 50507635 50507567 2.580000e-20 111.0
22 TraesCS5A01G042200 chr5B 89.011 91 7 2 8128 8215 50498389 50498299 9.290000e-20 110.0
23 TraesCS5A01G042200 chr5B 92.982 57 4 0 6183 6239 130916954 130916898 5.630000e-12 84.2
24 TraesCS5A01G042200 chr5D 93.697 4680 225 33 1021 5648 47864424 47859763 0.000000e+00 6944.0
25 TraesCS5A01G042200 chr5D 90.194 2733 204 30 1977 4661 118847619 118844903 0.000000e+00 3504.0
26 TraesCS5A01G042200 chr5D 92.776 2118 122 18 5673 7778 47859769 47857671 0.000000e+00 3035.0
27 TraesCS5A01G042200 chr5D 87.209 1462 115 37 6241 7661 118840300 118838870 0.000000e+00 1598.0
28 TraesCS5A01G042200 chr5D 89.604 1212 86 16 4656 5850 118841891 118840703 0.000000e+00 1504.0
29 TraesCS5A01G042200 chr5D 83.938 965 107 25 1042 1980 118848594 118847652 0.000000e+00 880.0
30 TraesCS5A01G042200 chr5D 85.077 583 55 15 6934 7509 47852508 47851951 4.590000e-157 566.0
31 TraesCS5A01G042200 chr5D 83.607 366 37 14 8215 8564 47856833 47856475 1.100000e-83 322.0
32 TraesCS5A01G042200 chr5D 91.758 182 13 2 8574 8754 442382111 442381931 1.460000e-62 252.0
33 TraesCS5A01G042200 chr5D 79.059 425 39 20 60 466 47864986 47864594 6.790000e-61 246.0
34 TraesCS5A01G042200 chr5D 82.645 242 16 11 7993 8214 47857297 47857062 3.230000e-44 191.0
35 TraesCS5A01G042200 chr5D 86.822 129 12 3 7861 7984 47857637 47857509 1.190000e-28 139.0
36 TraesCS5A01G042200 chr5D 91.781 73 6 0 8128 8200 47783314 47783242 1.560000e-17 102.0
37 TraesCS5A01G042200 chr5D 98.276 58 1 0 523 580 47864577 47864520 1.560000e-17 102.0
38 TraesCS5A01G042200 chr5D 90.541 74 7 0 8128 8201 47794003 47793930 2.010000e-16 99.0
39 TraesCS5A01G042200 chr5D 92.982 57 4 0 6183 6239 118840441 118840385 5.630000e-12 84.2
40 TraesCS5A01G042200 chr2D 86.437 2728 265 56 3373 6047 8499854 8497179 0.000000e+00 2891.0
41 TraesCS5A01G042200 chr2D 88.346 2128 196 29 1374 3453 8502059 8499936 0.000000e+00 2508.0
42 TraesCS5A01G042200 chr2D 84.729 1218 122 32 6184 7350 8497180 8495976 0.000000e+00 1160.0
43 TraesCS5A01G042200 chr2D 92.308 39 3 0 6226 6264 103476583 103476621 1.000000e-03 56.5
44 TraesCS5A01G042200 chr2B 86.506 2527 247 46 3373 5850 11291147 11288666 0.000000e+00 2691.0
45 TraesCS5A01G042200 chr2B 87.657 2147 189 37 1374 3453 11293366 11291229 0.000000e+00 2427.0
46 TraesCS5A01G042200 chr2B 85.714 1204 122 28 6184 7350 11288155 11286965 0.000000e+00 1225.0
47 TraesCS5A01G042200 chr2B 80.156 514 63 21 1403 1880 692397772 692397262 1.810000e-91 348.0
48 TraesCS5A01G042200 chr2A 86.188 2505 245 48 3373 5829 7549388 7546937 0.000000e+00 2615.0
49 TraesCS5A01G042200 chr2A 87.242 2132 184 42 1400 3453 7551672 7549551 0.000000e+00 2350.0
50 TraesCS5A01G042200 chr2A 84.244 1244 141 31 6184 7388 7546493 7545266 0.000000e+00 1160.0
51 TraesCS5A01G042200 chr2A 95.735 211 5 4 8544 8754 121219436 121219642 3.920000e-88 337.0
52 TraesCS5A01G042200 chr2A 89.844 128 12 1 5890 6016 7546631 7546504 7.030000e-36 163.0
53 TraesCS5A01G042200 chr2A 92.188 64 5 0 5935 5998 192621420 192621483 3.370000e-14 91.6
54 TraesCS5A01G042200 chr7D 84.426 1297 120 27 2527 3801 6012026 6010790 0.000000e+00 1201.0
55 TraesCS5A01G042200 chr7D 89.356 714 59 10 1915 2625 6013045 6012346 0.000000e+00 881.0
56 TraesCS5A01G042200 chr6D 81.321 530 55 22 1392 1880 4871929 4871403 2.960000e-104 390.0
57 TraesCS5A01G042200 chr7B 79.962 529 60 24 1392 1877 142939812 142939287 1.810000e-91 348.0
58 TraesCS5A01G042200 chr7B 87.786 131 13 2 6049 6178 453623440 453623312 5.480000e-32 150.0
59 TraesCS5A01G042200 chr7A 95.588 204 6 3 8556 8757 696408930 696408728 3.050000e-84 324.0
60 TraesCS5A01G042200 chr7A 87.692 130 14 1 6049 6178 462978736 462978609 5.480000e-32 150.0
61 TraesCS5A01G042200 chr7A 93.590 78 4 1 1915 1991 7497599 7497522 2.000000e-21 115.0
62 TraesCS5A01G042200 chr1A 86.972 284 35 2 5467 5749 204832767 204832485 1.420000e-82 318.0
63 TraesCS5A01G042200 chr4D 96.237 186 7 0 8572 8757 445388272 445388087 1.100000e-78 305.0
64 TraesCS5A01G042200 chr4D 88.148 135 14 1 6044 6178 420141170 420141038 9.100000e-35 159.0
65 TraesCS5A01G042200 chr4D 92.188 64 4 1 5935 5998 357309260 357309322 1.210000e-13 89.8
66 TraesCS5A01G042200 chr6B 85.263 285 38 4 5467 5750 310222262 310222543 3.090000e-74 291.0
67 TraesCS5A01G042200 chr6B 92.929 198 14 0 8560 8757 691754887 691754690 1.110000e-73 289.0
68 TraesCS5A01G042200 chr4A 92.188 192 14 1 8561 8752 522161011 522161201 4.030000e-68 270.0
69 TraesCS5A01G042200 chr4A 91.398 186 16 0 8572 8757 708705279 708705094 1.130000e-63 255.0
70 TraesCS5A01G042200 chr4A 85.034 147 15 6 6035 6178 426000813 426000955 9.160000e-30 143.0
71 TraesCS5A01G042200 chr4A 77.990 209 25 13 1912 2099 734102831 734103039 2.580000e-20 111.0
72 TraesCS5A01G042200 chr4B 92.896 183 8 1 8572 8754 554563504 554563681 2.420000e-65 261.0
73 TraesCS5A01G042200 chr4B 85.616 146 15 5 6035 6178 159632822 159632963 1.970000e-31 148.0
74 TraesCS5A01G042200 chr4B 87.218 133 14 2 6046 6178 483581988 483582117 1.970000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G042200 chr5A 37973793 37982549 8756 True 7700.000000 14325 100.000000 1 8757 2 chr5A.!!$R1 8756
1 TraesCS5A01G042200 chr5A 128430316 128441369 11053 True 1136.285714 3262 89.588286 1003 7918 7 chr5A.!!$R2 6915
2 TraesCS5A01G042200 chr5B 50507567 50517614 10047 True 2525.250000 9546 90.582750 363 8196 4 chr5B.!!$R3 7833
3 TraesCS5A01G042200 chr5B 130930417 130934946 4529 True 1732.000000 2933 87.557000 1977 4661 2 chr5B.!!$R5 2684
4 TraesCS5A01G042200 chr5B 130914669 130918388 3719 True 994.400000 1537 88.757667 4656 7960 3 chr5B.!!$R4 3304
5 TraesCS5A01G042200 chr5D 118838870 118848594 9724 True 1514.040000 3504 88.785400 1042 7661 5 chr5D.!!$R5 6619
6 TraesCS5A01G042200 chr5D 47851951 47864986 13035 True 1443.125000 6944 87.744875 60 8564 8 chr5D.!!$R4 8504
7 TraesCS5A01G042200 chr2D 8495976 8502059 6083 True 2186.333333 2891 86.504000 1374 7350 3 chr2D.!!$R1 5976
8 TraesCS5A01G042200 chr2B 11286965 11293366 6401 True 2114.333333 2691 86.625667 1374 7350 3 chr2B.!!$R2 5976
9 TraesCS5A01G042200 chr2B 692397262 692397772 510 True 348.000000 348 80.156000 1403 1880 1 chr2B.!!$R1 477
10 TraesCS5A01G042200 chr2A 7545266 7551672 6406 True 1572.000000 2615 86.879500 1400 7388 4 chr2A.!!$R1 5988
11 TraesCS5A01G042200 chr7D 6010790 6013045 2255 True 1041.000000 1201 86.891000 1915 3801 2 chr7D.!!$R1 1886
12 TraesCS5A01G042200 chr6D 4871403 4871929 526 True 390.000000 390 81.321000 1392 1880 1 chr6D.!!$R1 488
13 TraesCS5A01G042200 chr7B 142939287 142939812 525 True 348.000000 348 79.962000 1392 1877 1 chr7B.!!$R1 485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 202 0.034059 CCACGAGCAGTTGAGAAGGT 59.966 55.000 0.00 0.00 0.00 3.50 F
1163 1242 0.323087 ACGGGTTGGAATTAGGTGCC 60.323 55.000 0.00 0.00 0.00 5.01 F
1225 1304 0.039256 TCGATTGCAAGCTTGTTGCC 60.039 50.000 26.55 11.22 44.32 4.52 F
1238 1342 0.389948 TGTTGCCGCCGTTTTTGTTT 60.390 45.000 0.00 0.00 0.00 2.83 F
2768 3467 0.251077 AAAGCACCAGAAGCCTCCAG 60.251 55.000 0.00 0.00 0.00 3.86 F
3473 4421 2.039084 AGAATGGAGAGAAGTTTGCCGT 59.961 45.455 0.00 0.00 0.00 5.68 F
4298 7109 1.134461 TGCCACATGCTTGCACTTTTT 60.134 42.857 0.00 0.00 42.00 1.94 F
6276 14102 0.752054 CCATGCCACACCACAAGTTT 59.248 50.000 0.00 0.00 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1165 1244 0.393808 TTAGGAAATCCACAGGCGGC 60.394 55.000 0.00 0.0 38.89 6.53 R
2235 2528 0.108424 CAGGTGCCTCTGTAGCAGAC 60.108 60.000 0.00 0.0 41.87 3.51 R
2397 2692 0.449388 CAGATTCCACTTGGCGCTTC 59.551 55.000 7.64 0.0 34.44 3.86 R
3006 3706 1.049289 GCCGTCCTTCCCTACCATCT 61.049 60.000 0.00 0.0 0.00 2.90 R
3646 4599 1.043116 CCTACCGATGGCTCAGACCA 61.043 60.000 0.00 0.0 45.82 4.02 R
4857 11718 2.039613 CTGGAGGAGATTTATCAGGGCC 59.960 54.545 0.00 0.0 0.00 5.80 R
6289 14117 1.142262 ACCAAACAGGCGACTAACCTT 59.858 47.619 0.00 0.0 43.14 3.50 R
7908 17644 0.828677 CCAAGGTAGGTAGGTTCCCG 59.171 60.000 0.00 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.776322 CCTGACGCGGCCCAATGA 62.776 66.667 10.82 0.00 0.00 2.57
26 27 2.514592 CTGACGCGGCCCAATGAT 60.515 61.111 10.82 0.00 0.00 2.45
27 28 2.823593 TGACGCGGCCCAATGATG 60.824 61.111 10.82 0.00 0.00 3.07
28 29 2.513666 GACGCGGCCCAATGATGA 60.514 61.111 12.47 0.00 0.00 2.92
29 30 1.893808 GACGCGGCCCAATGATGAT 60.894 57.895 12.47 0.00 0.00 2.45
30 31 2.121564 GACGCGGCCCAATGATGATG 62.122 60.000 12.47 0.00 0.00 3.07
31 32 2.911484 CGCGGCCCAATGATGATGG 61.911 63.158 0.00 0.00 37.71 3.51
32 33 3.045142 CGGCCCAATGATGATGGC 58.955 61.111 0.00 0.00 43.26 4.40
34 35 3.463345 GCCCAATGATGATGGCCC 58.537 61.111 0.00 0.00 37.94 5.80
35 36 1.152398 GCCCAATGATGATGGCCCT 60.152 57.895 0.00 0.00 37.94 5.19
36 37 1.469335 GCCCAATGATGATGGCCCTG 61.469 60.000 0.00 0.00 37.94 4.45
37 38 0.830444 CCCAATGATGATGGCCCTGG 60.830 60.000 0.00 0.00 36.58 4.45
38 39 0.830444 CCAATGATGATGGCCCTGGG 60.830 60.000 8.86 8.86 0.00 4.45
50 51 3.409201 CCCTGGGCACACTCATATG 57.591 57.895 0.00 0.00 0.00 1.78
51 52 0.179009 CCCTGGGCACACTCATATGG 60.179 60.000 0.00 0.00 0.00 2.74
52 53 0.548031 CCTGGGCACACTCATATGGT 59.452 55.000 2.13 0.00 0.00 3.55
53 54 1.475751 CCTGGGCACACTCATATGGTC 60.476 57.143 2.13 0.00 0.00 4.02
54 55 0.546122 TGGGCACACTCATATGGTCC 59.454 55.000 2.13 0.00 0.00 4.46
55 56 0.546122 GGGCACACTCATATGGTCCA 59.454 55.000 2.13 0.00 0.00 4.02
56 57 1.668419 GGCACACTCATATGGTCCAC 58.332 55.000 2.13 0.00 0.00 4.02
57 58 1.065491 GGCACACTCATATGGTCCACA 60.065 52.381 2.13 0.00 0.00 4.17
58 59 2.421952 GGCACACTCATATGGTCCACAT 60.422 50.000 2.13 0.00 43.68 3.21
63 64 3.648067 CACTCATATGGTCCACATACCCT 59.352 47.826 2.13 0.00 44.41 4.34
72 73 3.071167 GGTCCACATACCCTTCATAGACC 59.929 52.174 0.00 0.00 34.97 3.85
110 111 1.300080 GTCCGAACCGTCCGAACAA 60.300 57.895 0.00 0.00 0.00 2.83
111 112 1.007038 TCCGAACCGTCCGAACAAG 60.007 57.895 0.00 0.00 0.00 3.16
140 151 3.674050 ATCGAGTAGCCCCCACCGT 62.674 63.158 0.00 0.00 0.00 4.83
177 188 2.493973 CTCTCTCTGCCCACGAGC 59.506 66.667 0.00 0.00 0.00 5.03
178 189 2.283173 TCTCTCTGCCCACGAGCA 60.283 61.111 0.00 0.00 41.46 4.26
189 202 0.034059 CCACGAGCAGTTGAGAAGGT 59.966 55.000 0.00 0.00 0.00 3.50
193 206 0.398318 GAGCAGTTGAGAAGGTGGGT 59.602 55.000 0.00 0.00 0.00 4.51
199 212 2.299297 AGTTGAGAAGGTGGGTACTTCG 59.701 50.000 0.00 0.00 46.78 3.79
204 217 0.696501 AAGGTGGGTACTTCGCCATT 59.303 50.000 17.18 8.88 37.26 3.16
207 220 1.339727 GGTGGGTACTTCGCCATTCTT 60.340 52.381 12.30 0.00 35.06 2.52
217 230 5.428253 ACTTCGCCATTCTTTATAGAAGCA 58.572 37.500 2.08 0.00 43.33 3.91
240 253 9.647797 AGCAAATATCCATGTTAATGCAATATG 57.352 29.630 0.00 0.00 35.95 1.78
249 262 9.577110 CCATGTTAATGCAATATGGTATGAATC 57.423 33.333 4.85 0.00 45.96 2.52
269 282 9.887629 ATGAATCAAATTGAGCTATCGATATCT 57.112 29.630 8.49 8.49 0.00 1.98
282 295 9.935241 AGCTATCGATATCTAAATTTGTGTGAT 57.065 29.630 7.00 2.61 0.00 3.06
326 342 1.826385 AAAGCTCATCGGGGAACTTG 58.174 50.000 0.00 0.00 0.00 3.16
381 398 7.514784 AAAGTTAAGGTATAAAGTGCCGTTT 57.485 32.000 0.00 0.00 37.71 3.60
397 416 4.848757 GCCGTTTATAAGAGGCTCAATTG 58.151 43.478 18.26 0.00 45.67 2.32
398 417 4.574828 GCCGTTTATAAGAGGCTCAATTGA 59.425 41.667 18.26 8.12 45.67 2.57
399 418 5.504173 GCCGTTTATAAGAGGCTCAATTGAC 60.504 44.000 18.26 10.20 45.67 3.18
400 419 5.584649 CCGTTTATAAGAGGCTCAATTGACA 59.415 40.000 18.26 0.00 0.00 3.58
401 420 6.238211 CCGTTTATAAGAGGCTCAATTGACAG 60.238 42.308 18.26 0.00 0.00 3.51
402 421 6.490534 GTTTATAAGAGGCTCAATTGACAGC 58.509 40.000 18.26 7.60 34.65 4.40
416 435 1.860484 GACAGCTTGCTCTTGGTGGC 61.860 60.000 0.00 0.00 36.17 5.01
449 468 0.596577 TCCTCCGTGACGACTCAAAG 59.403 55.000 6.54 0.00 0.00 2.77
467 486 2.708255 CGTCTCTCGCCGTCCTAC 59.292 66.667 0.00 0.00 0.00 3.18
468 487 2.708255 GTCTCTCGCCGTCCTACG 59.292 66.667 0.00 0.00 42.11 3.51
469 488 3.200593 TCTCTCGCCGTCCTACGC 61.201 66.667 0.00 0.00 40.91 4.42
470 489 4.253257 CTCTCGCCGTCCTACGCC 62.253 72.222 0.00 0.00 40.91 5.68
472 491 4.124351 CTCGCCGTCCTACGCCAA 62.124 66.667 0.00 0.00 40.91 4.52
473 492 4.424566 TCGCCGTCCTACGCCAAC 62.425 66.667 0.00 0.00 40.91 3.77
522 541 3.056313 GCCATGAAAGCGTGCCTCC 62.056 63.158 0.00 0.00 0.00 4.30
1137 1216 4.223964 GCCGCACGCGAGGATTTC 62.224 66.667 15.93 0.00 42.83 2.17
1163 1242 0.323087 ACGGGTTGGAATTAGGTGCC 60.323 55.000 0.00 0.00 0.00 5.01
1164 1243 1.035385 CGGGTTGGAATTAGGTGCCC 61.035 60.000 0.00 0.00 0.00 5.36
1165 1244 1.035385 GGGTTGGAATTAGGTGCCCG 61.035 60.000 0.00 0.00 0.00 6.13
1215 1294 5.471797 TGTTCTAATTTCACCTCGATTGCAA 59.528 36.000 0.00 0.00 0.00 4.08
1224 1303 1.334054 CTCGATTGCAAGCTTGTTGC 58.666 50.000 26.55 14.89 45.11 4.17
1225 1304 0.039256 TCGATTGCAAGCTTGTTGCC 60.039 50.000 26.55 11.22 44.32 4.52
1233 1337 2.279186 GCTTGTTGCCGCCGTTTT 60.279 55.556 0.00 0.00 35.15 2.43
1234 1338 1.880796 GCTTGTTGCCGCCGTTTTT 60.881 52.632 0.00 0.00 35.15 1.94
1235 1339 1.923619 CTTGTTGCCGCCGTTTTTG 59.076 52.632 0.00 0.00 0.00 2.44
1238 1342 0.389948 TGTTGCCGCCGTTTTTGTTT 60.390 45.000 0.00 0.00 0.00 2.83
1243 1347 1.536462 CCGCCGTTTTTGTTTGCTCG 61.536 55.000 0.00 0.00 0.00 5.03
1262 1366 2.505498 CGTCGTCTGATTTCGCCGG 61.505 63.158 0.00 0.00 0.00 6.13
1292 1396 1.499049 GTTCCGATTGGTCGCTATCC 58.501 55.000 0.00 0.00 46.32 2.59
1305 1439 1.541233 CGCTATCCAACACCTGATCCC 60.541 57.143 0.00 0.00 0.00 3.85
1362 1508 2.543653 GCAAGTCCCACAAATGTGTCAC 60.544 50.000 12.21 8.07 44.21 3.67
1370 1516 4.379813 CCCACAAATGTGTCACTATTGCTC 60.380 45.833 16.38 0.00 44.21 4.26
1431 1584 1.270041 GGAAGACGATCTCTGGATGCC 60.270 57.143 0.00 0.00 31.46 4.40
1433 1586 1.006805 GACGATCTCTGGATGCCGG 60.007 63.158 0.00 0.00 31.46 6.13
1468 1625 0.739813 GGTGCTCGGCGATACAGTTT 60.740 55.000 11.27 0.00 0.00 2.66
1482 1639 6.741358 GCGATACAGTTTCACCTGTTAATTTC 59.259 38.462 0.00 0.00 42.99 2.17
1518 1683 5.073008 TCAATATATGCTTACAAGGGGCTGA 59.927 40.000 0.00 0.00 0.00 4.26
1521 1690 1.289160 TGCTTACAAGGGGCTGATCT 58.711 50.000 0.00 0.00 0.00 2.75
1542 1714 2.037144 TGGTATTTCTCCGAGTAGGCC 58.963 52.381 0.00 0.00 40.77 5.19
1626 1816 3.054875 ACTGCATAGCAATTCAGACCTGA 60.055 43.478 0.00 0.00 38.41 3.86
1712 1913 1.243342 TTTTGGTCTCAGGCATGGCG 61.243 55.000 14.30 9.09 0.00 5.69
1721 1922 1.341209 TCAGGCATGGCGTATAGTCTG 59.659 52.381 14.30 4.07 0.00 3.51
1837 2053 6.348050 CCTGTTTATCAGCTTCAACTTCAGTC 60.348 42.308 0.00 0.00 42.38 3.51
1841 2057 5.876612 ATCAGCTTCAACTTCAGTCAATC 57.123 39.130 0.00 0.00 0.00 2.67
1865 2084 4.141482 TGGTCTATTGTTATCCCAGAAGCC 60.141 45.833 0.00 0.00 0.00 4.35
1930 2150 4.632538 ACAACAACTTCCTGTGCTAAAC 57.367 40.909 0.00 0.00 0.00 2.01
1932 2152 5.433526 ACAACAACTTCCTGTGCTAAACTA 58.566 37.500 0.00 0.00 0.00 2.24
1998 2254 7.008901 CAGCAGTATTTAACAACTCATGCATTG 59.991 37.037 0.00 0.00 0.00 2.82
2035 2291 4.507710 TGCATCAAGTGATTACTGGAGTC 58.492 43.478 0.77 0.00 40.16 3.36
2070 2326 5.770162 CCAGTATCCATCTGGTAAATTTCCC 59.230 44.000 0.00 0.00 45.09 3.97
2235 2528 4.440127 GCTGCAAACCATGGCGGG 62.440 66.667 13.04 1.74 40.22 6.13
2286 2581 4.310769 CTGTTAAGGGTTCTCTGTCACAG 58.689 47.826 0.00 0.00 0.00 3.66
2303 2598 2.825387 GCCTGATGACCATGCGCA 60.825 61.111 14.96 14.96 0.00 6.09
2397 2692 1.512926 CCTTCGTGAGTTCACAAGGG 58.487 55.000 22.33 9.97 46.75 3.95
2442 2737 0.744281 AAACCAAACCCAACAGCGAG 59.256 50.000 0.00 0.00 0.00 5.03
2443 2738 1.734388 AACCAAACCCAACAGCGAGC 61.734 55.000 0.00 0.00 0.00 5.03
2542 2837 1.073199 GGGACACCTGACCAACCTG 59.927 63.158 0.00 0.00 0.00 4.00
2593 3126 2.031420 GGGAACAAGAAGGTTTACACGC 60.031 50.000 0.00 0.00 0.00 5.34
2703 3402 5.506686 TTGAGTCAGATTCTGATACTCCG 57.493 43.478 22.88 0.00 42.73 4.63
2768 3467 0.251077 AAAGCACCAGAAGCCTCCAG 60.251 55.000 0.00 0.00 0.00 3.86
3006 3706 4.971939 TGATTTCTGACAAGATCACACCA 58.028 39.130 0.00 0.00 32.37 4.17
3041 3741 4.896482 AGGACGGCTATCTTCTAGAAATGT 59.104 41.667 6.63 0.00 0.00 2.71
3133 3837 3.028130 AGCTGTTCTAGAAGCCCTACTC 58.972 50.000 5.12 0.00 40.42 2.59
3204 3908 2.358898 GTCTTCAGAAAAGTTGCTGCCA 59.641 45.455 0.00 0.00 32.27 4.92
3326 4031 4.924305 ATTTGAGCAAAGCTTCAGACAA 57.076 36.364 0.00 2.30 39.88 3.18
3330 4035 3.696051 TGAGCAAAGCTTCAGACAAAAGT 59.304 39.130 0.00 0.00 39.88 2.66
3453 4401 4.580580 GCAAGTCCCCAGATAAATGGTAAG 59.419 45.833 0.00 0.00 38.81 2.34
3455 4403 6.423182 CAAGTCCCCAGATAAATGGTAAGAA 58.577 40.000 0.00 0.00 38.81 2.52
3472 4420 2.704572 AGAATGGAGAGAAGTTTGCCG 58.295 47.619 0.00 0.00 0.00 5.69
3473 4421 2.039084 AGAATGGAGAGAAGTTTGCCGT 59.961 45.455 0.00 0.00 0.00 5.68
3487 4436 3.177600 CCGTTCCATTGGCAGACG 58.822 61.111 14.94 14.94 0.00 4.18
3547 4496 5.931724 ACTTTTGCAACTAATGTAAATGGCC 59.068 36.000 0.00 0.00 42.17 5.36
3646 4599 5.131642 TCAAGTTCCTATGCTTCTGATCCAT 59.868 40.000 0.00 0.00 0.00 3.41
3699 4664 9.827198 AATCTATAAATCATTTCCCAGCCATAA 57.173 29.630 0.00 0.00 0.00 1.90
3761 4732 8.099537 ACTCTATCTGTTTGTCACTCATTCATT 58.900 33.333 0.00 0.00 0.00 2.57
3771 4742 7.189693 TGTCACTCATTCATTTACTGTTGAC 57.810 36.000 0.00 0.00 0.00 3.18
3774 4745 8.292448 GTCACTCATTCATTTACTGTTGACATT 58.708 33.333 0.00 0.00 0.00 2.71
3780 4751 8.464404 CATTCATTTACTGTTGACATTCAGGAT 58.536 33.333 11.19 2.64 36.17 3.24
3832 4803 4.540099 ACAGTGAATCTCCTAATTCCCCAA 59.460 41.667 0.00 0.00 35.23 4.12
3918 4889 5.392487 GGCTCAAACTTCTATTCCAAGCTTC 60.392 44.000 0.00 0.00 0.00 3.86
3950 4921 6.545504 TCAGAATACTGACTTTGCAACTTC 57.454 37.500 0.00 0.00 46.55 3.01
3953 4924 5.471456 AGAATACTGACTTTGCAACTTCCAG 59.529 40.000 0.00 7.17 0.00 3.86
3980 4951 8.249638 TGCACATTAATACTTTGTACATGCAAT 58.750 29.630 9.27 0.00 0.00 3.56
4094 6887 1.998315 CTTCTGTTCTGCACGAGGATG 59.002 52.381 0.00 0.00 0.00 3.51
4102 6895 2.881513 TCTGCACGAGGATGATACTCTC 59.118 50.000 2.74 0.00 32.83 3.20
4165 6965 9.702253 ACTTTCTCTATGTATCTTCTAGAACCA 57.298 33.333 0.00 0.00 0.00 3.67
4167 6967 9.702253 TTTCTCTATGTATCTTCTAGAACCAGT 57.298 33.333 0.00 0.00 0.00 4.00
4168 6968 9.702253 TTCTCTATGTATCTTCTAGAACCAGTT 57.298 33.333 0.00 0.00 0.00 3.16
4277 7088 5.309323 TGCTAGGTGTTAATTGCACATTC 57.691 39.130 14.19 6.19 38.51 2.67
4298 7109 1.134461 TGCCACATGCTTGCACTTTTT 60.134 42.857 0.00 0.00 42.00 1.94
4299 7110 1.262151 GCCACATGCTTGCACTTTTTG 59.738 47.619 0.00 0.00 36.87 2.44
4320 7133 4.980590 TGAACCAAAGCGTAATTATGCAG 58.019 39.130 27.13 17.36 40.60 4.41
4371 7196 3.388024 CACCTAGAGCCTAGGCATGTTTA 59.612 47.826 34.70 17.10 44.88 2.01
4857 11718 4.728882 GCAAATGGCTTTCAGATGTAGACG 60.729 45.833 0.00 0.00 40.25 4.18
4963 11824 2.231235 CGCCTATTCCTTTTGCCACTTT 59.769 45.455 0.00 0.00 0.00 2.66
5410 12275 7.169982 CACACCTAGTTGTATATCTAAGCTTGC 59.830 40.741 9.86 0.00 0.00 4.01
5815 12721 6.015350 CGATTCCTGTATGTTATGTAGGTCCT 60.015 42.308 0.00 0.00 0.00 3.85
5923 13392 8.330302 GGTTGATTTTGTTCTTGAATCACTTTG 58.670 33.333 0.00 0.00 38.94 2.77
5925 13394 8.633075 TGATTTTGTTCTTGAATCACTTTGAC 57.367 30.769 0.00 0.00 35.51 3.18
5945 13414 4.184629 GACCGTCTGAATACTGAAGCATT 58.815 43.478 0.00 0.00 0.00 3.56
5946 13415 4.579869 ACCGTCTGAATACTGAAGCATTT 58.420 39.130 0.00 0.00 0.00 2.32
6026 13498 8.079211 TCTTTCTGCAGTTATCCACTATAGTT 57.921 34.615 14.67 0.00 32.76 2.24
6027 13499 8.540388 TCTTTCTGCAGTTATCCACTATAGTTT 58.460 33.333 14.67 0.00 32.76 2.66
6150 13622 6.769134 TCACTCATCTCAGTCCGTATTTAA 57.231 37.500 0.00 0.00 0.00 1.52
6276 14102 0.752054 CCATGCCACACCACAAGTTT 59.248 50.000 0.00 0.00 0.00 2.66
6289 14117 3.697045 CCACAAGTTTGGTAGGTTTGACA 59.303 43.478 0.00 0.00 0.00 3.58
6363 14370 6.956102 TGGGAATCCTTACACTTTACCTTA 57.044 37.500 0.00 0.00 0.00 2.69
6540 14551 3.369451 GCACGAACTCTCTCAAGGAATTC 59.631 47.826 0.00 0.00 0.00 2.17
6546 14557 3.513515 ACTCTCTCAAGGAATTCGAAGCT 59.486 43.478 3.35 0.00 0.00 3.74
6576 14587 4.141824 GCAGAACTTAAGGGAGTAGCTGAT 60.142 45.833 7.53 0.00 35.71 2.90
6590 14602 6.477360 GGAGTAGCTGATAAGCAAAGTAAGTC 59.523 42.308 4.45 0.00 37.25 3.01
6667 14683 8.009974 GGCTATTTATTACAAACTGATACTGCG 58.990 37.037 0.00 0.00 0.00 5.18
6685 14701 2.428890 TGCGTGAACTCCCAAAAATGTT 59.571 40.909 0.00 0.00 0.00 2.71
6692 14708 6.930722 GTGAACTCCCAAAAATGTTGAATCAT 59.069 34.615 0.00 0.00 0.00 2.45
6693 14709 6.930164 TGAACTCCCAAAAATGTTGAATCATG 59.070 34.615 0.00 0.00 0.00 3.07
6694 14710 6.423776 ACTCCCAAAAATGTTGAATCATGT 57.576 33.333 0.00 0.00 0.00 3.21
6824 14849 7.616313 TCCAACATTGTAAGGTTTGAAGTTTT 58.384 30.769 7.76 0.00 29.39 2.43
6886 14912 7.281040 TGAAATAGAATGATTGCCCAATCTC 57.719 36.000 18.63 10.84 45.55 2.75
6887 14913 7.064866 TGAAATAGAATGATTGCCCAATCTCT 58.935 34.615 18.63 15.96 45.55 3.10
6937 15017 7.369803 AGTCAGCAGTGAAGTAATTATGTTG 57.630 36.000 0.00 0.00 33.27 3.33
6945 15025 6.595716 AGTGAAGTAATTATGTTGAGCTCACC 59.404 38.462 18.03 10.78 0.00 4.02
6956 15036 2.905075 TGAGCTCACCGTTATCATTGG 58.095 47.619 13.74 0.00 0.00 3.16
6988 15068 7.431249 GCAAATGGAATGAATCATCATACAGT 58.569 34.615 0.00 0.00 45.60 3.55
6989 15072 7.924412 GCAAATGGAATGAATCATCATACAGTT 59.076 33.333 0.00 0.00 45.60 3.16
7024 15108 7.858052 ATCTGTTTAAATGCTCTGTTTTTCG 57.142 32.000 0.00 0.00 0.00 3.46
7153 15247 4.683432 AGCTCAAGGACGCTGAAC 57.317 55.556 0.00 0.00 34.69 3.18
7168 15262 3.589988 GCTGAACTCAAAATCTCGGAGA 58.410 45.455 10.62 10.62 33.00 3.71
7207 15301 2.926329 ACATCATTCCTAAACCCCAGGT 59.074 45.455 0.00 0.00 37.65 4.00
7209 15303 4.079958 ACATCATTCCTAAACCCCAGGTAC 60.080 45.833 0.00 0.00 33.12 3.34
7213 15311 0.107848 CCTAAACCCCAGGTACGCTG 60.108 60.000 4.81 4.81 33.12 5.18
7228 15326 4.024048 GGTACGCTGGTATTGATCAAATGG 60.024 45.833 13.09 2.96 0.00 3.16
7234 15332 5.221244 GCTGGTATTGATCAAATGGTAACCC 60.221 44.000 13.09 4.52 0.00 4.11
7278 15379 1.208293 AGAGCCCGGAAGAAGATGAAC 59.792 52.381 0.73 0.00 0.00 3.18
7363 15466 6.866770 TGCTCTACACAAACACAAGTAGATAC 59.133 38.462 0.00 0.00 41.28 2.24
7380 15483 4.547532 AGATACATAGCTAAGGCGAAACG 58.452 43.478 0.00 0.00 44.37 3.60
7573 15707 0.988832 TTACCATCCGGGCAAGTTCT 59.011 50.000 0.00 0.00 42.05 3.01
7582 15719 1.518903 GGGCAAGTTCTCACCAGTGC 61.519 60.000 0.00 0.00 0.00 4.40
7589 15726 3.744660 AGTTCTCACCAGTGCCTTAAAG 58.255 45.455 0.00 0.00 0.00 1.85
7688 15832 1.406898 TGAATTTGCTGCCACGTGAAA 59.593 42.857 19.30 9.55 0.00 2.69
7699 15843 3.105937 GCCACGTGAAAGAAAAAGTGAC 58.894 45.455 19.30 0.00 0.00 3.67
7700 15844 3.426963 GCCACGTGAAAGAAAAAGTGACA 60.427 43.478 19.30 0.00 0.00 3.58
7740 15924 2.726821 TCTGGTGGCATCTTTGATTCC 58.273 47.619 0.00 0.00 0.00 3.01
7761 15945 2.114488 TTTGCTTGCCAATGCCCCTG 62.114 55.000 0.00 0.00 36.33 4.45
7766 15950 1.814772 TTGCCAATGCCCCTGTTTCG 61.815 55.000 0.00 0.00 36.33 3.46
7793 15997 7.046652 TGAGATGAGAAGAAATTAGAGGCAAG 58.953 38.462 0.00 0.00 0.00 4.01
7815 17551 1.200760 ATGTCTGGCCTGGCTGTACA 61.201 55.000 19.68 18.66 0.00 2.90
7820 17556 0.821711 TGGCCTGGCTGTACACAAAC 60.822 55.000 19.68 0.00 0.00 2.93
7821 17557 0.821711 GGCCTGGCTGTACACAAACA 60.822 55.000 19.68 0.00 0.00 2.83
7839 17575 6.652481 CACAAACAGTAGACATCTTTGATCCT 59.348 38.462 0.00 0.00 0.00 3.24
7898 17634 0.321387 AGCTGTGGCAGATGACAGTG 60.321 55.000 0.00 0.00 41.47 3.66
7902 17638 1.171308 GTGGCAGATGACAGTGCATT 58.829 50.000 13.13 0.00 41.75 3.56
7908 17644 3.671928 GCAGATGACAGTGCATTCAAAAC 59.328 43.478 7.53 0.00 39.62 2.43
7942 17682 1.133025 CCTTGGCCTTTGCAGATAACG 59.867 52.381 3.32 0.00 40.13 3.18
7954 17694 3.181488 TGCAGATAACGGAATTGCAATGG 60.181 43.478 13.82 8.20 41.34 3.16
7961 17701 3.214328 ACGGAATTGCAATGGGAGATAC 58.786 45.455 13.82 0.00 0.00 2.24
7963 17703 3.499918 CGGAATTGCAATGGGAGATACTC 59.500 47.826 13.82 3.04 0.00 2.59
7981 17721 9.685828 GAGATACTCATGGATCTACAAGTAAAC 57.314 37.037 6.52 5.12 32.47 2.01
7983 17723 9.988815 GATACTCATGGATCTACAAGTAAACAT 57.011 33.333 6.52 0.00 0.00 2.71
7984 17724 9.988815 ATACTCATGGATCTACAAGTAAACATC 57.011 33.333 6.52 0.00 0.00 3.06
7985 17725 6.980978 ACTCATGGATCTACAAGTAAACATCG 59.019 38.462 0.00 0.00 0.00 3.84
7986 17726 6.873997 TCATGGATCTACAAGTAAACATCGT 58.126 36.000 0.00 0.00 0.00 3.73
7988 17728 6.961359 TGGATCTACAAGTAAACATCGTTG 57.039 37.500 0.00 0.00 0.00 4.10
7989 17729 6.460781 TGGATCTACAAGTAAACATCGTTGT 58.539 36.000 0.00 0.00 37.82 3.32
7990 17730 6.588756 TGGATCTACAAGTAAACATCGTTGTC 59.411 38.462 0.00 0.00 34.06 3.18
7991 17731 6.812160 GGATCTACAAGTAAACATCGTTGTCT 59.188 38.462 0.00 0.00 34.06 3.41
7993 17733 6.978338 TCTACAAGTAAACATCGTTGTCTCT 58.022 36.000 0.00 0.00 34.06 3.10
7994 17734 7.082602 TCTACAAGTAAACATCGTTGTCTCTC 58.917 38.462 0.00 0.00 34.06 3.20
7995 17735 5.844004 ACAAGTAAACATCGTTGTCTCTCT 58.156 37.500 0.00 0.00 34.06 3.10
7997 17737 5.968528 AGTAAACATCGTTGTCTCTCTCT 57.031 39.130 0.00 0.00 34.06 3.10
7998 17738 5.945155 AGTAAACATCGTTGTCTCTCTCTC 58.055 41.667 0.00 0.00 34.06 3.20
8004 18686 5.105106 ACATCGTTGTCTCTCTCTCTCTCTA 60.105 44.000 0.00 0.00 0.00 2.43
8035 18719 2.223994 GCCAGAGGGACGGTCTATAAAC 60.224 54.545 8.23 0.00 35.59 2.01
8038 18722 3.446161 CAGAGGGACGGTCTATAAACACA 59.554 47.826 8.23 0.00 0.00 3.72
8047 18731 1.065998 TCTATAAACACACACGGGGCC 60.066 52.381 0.00 0.00 0.00 5.80
8058 18742 4.148825 CGGGGCCTCTTCGACCAG 62.149 72.222 0.00 0.00 0.00 4.00
8063 18747 1.004440 GCCTCTTCGACCAGCAAGT 60.004 57.895 0.00 0.00 0.00 3.16
8080 18764 3.304559 GCAAGTATCACAGCAGAACGTAG 59.695 47.826 0.00 0.00 0.00 3.51
8081 18765 4.733850 CAAGTATCACAGCAGAACGTAGA 58.266 43.478 0.00 0.00 0.00 2.59
8082 18766 4.624336 AGTATCACAGCAGAACGTAGAG 57.376 45.455 0.00 0.00 0.00 2.43
8110 18809 3.795826 GCTCTAAAAGCCTCGCTCGAATA 60.796 47.826 0.00 0.00 45.92 1.75
8115 18814 3.393089 AAGCCTCGCTCGAATAATCAT 57.607 42.857 0.00 0.00 38.25 2.45
8116 18815 3.393089 AGCCTCGCTCGAATAATCATT 57.607 42.857 0.00 0.00 30.62 2.57
8119 18818 3.061429 GCCTCGCTCGAATAATCATTAGC 59.939 47.826 0.00 0.00 0.00 3.09
8121 18820 5.641709 CCTCGCTCGAATAATCATTAGCTA 58.358 41.667 0.00 0.00 0.00 3.32
8124 18823 4.859245 CGCTCGAATAATCATTAGCTAGCA 59.141 41.667 18.83 0.00 0.00 3.49
8125 18824 5.004251 CGCTCGAATAATCATTAGCTAGCAG 59.996 44.000 18.83 3.78 0.00 4.24
8126 18825 5.220378 GCTCGAATAATCATTAGCTAGCAGC 60.220 44.000 18.83 7.81 42.84 5.25
8156 18889 1.797933 CGCTCTCTTGGTCGTCGTG 60.798 63.158 0.00 0.00 0.00 4.35
8222 19183 0.938168 GTCAGTCGACAACACCCGTC 60.938 60.000 19.50 0.00 42.13 4.79
8258 19219 1.135315 CCCAACACAATGCAAGGATCG 60.135 52.381 0.00 0.00 0.00 3.69
8375 19343 3.265791 CCTCGTGTACCTACTTCTACGT 58.734 50.000 0.00 0.00 33.68 3.57
8378 19346 2.160219 CGTGTACCTACTTCTACGTGCA 59.840 50.000 0.00 0.00 0.00 4.57
8406 19374 5.356751 TGAATAAAACTGGTAATCGCTGCAT 59.643 36.000 0.00 0.00 0.00 3.96
8407 19375 3.492421 AAAACTGGTAATCGCTGCATG 57.508 42.857 0.00 0.00 0.00 4.06
8408 19376 2.113860 AACTGGTAATCGCTGCATGT 57.886 45.000 0.00 0.00 0.00 3.21
8409 19377 1.656652 ACTGGTAATCGCTGCATGTC 58.343 50.000 0.00 0.00 0.00 3.06
8410 19378 1.208052 ACTGGTAATCGCTGCATGTCT 59.792 47.619 0.00 0.00 0.00 3.41
8411 19379 1.596260 CTGGTAATCGCTGCATGTCTG 59.404 52.381 0.00 0.00 0.00 3.51
8412 19380 1.066215 TGGTAATCGCTGCATGTCTGT 60.066 47.619 0.00 0.00 0.00 3.41
8413 19381 1.594862 GGTAATCGCTGCATGTCTGTC 59.405 52.381 0.00 0.00 0.00 3.51
8414 19382 2.544685 GTAATCGCTGCATGTCTGTCT 58.455 47.619 0.00 0.00 0.00 3.41
8415 19383 1.366679 AATCGCTGCATGTCTGTCTG 58.633 50.000 0.00 0.00 0.00 3.51
8416 19384 0.248565 ATCGCTGCATGTCTGTCTGT 59.751 50.000 0.00 0.00 0.00 3.41
8417 19385 0.389037 TCGCTGCATGTCTGTCTGTC 60.389 55.000 0.00 0.00 0.00 3.51
8418 19386 0.389556 CGCTGCATGTCTGTCTGTCT 60.390 55.000 0.00 0.00 0.00 3.41
8419 19387 1.077123 GCTGCATGTCTGTCTGTCTG 58.923 55.000 0.00 0.00 0.00 3.51
8420 19388 1.723220 CTGCATGTCTGTCTGTCTGG 58.277 55.000 0.00 0.00 0.00 3.86
8421 19389 1.274447 CTGCATGTCTGTCTGTCTGGA 59.726 52.381 0.00 0.00 0.00 3.86
8427 19395 3.031013 TGTCTGTCTGTCTGGAAACTGA 58.969 45.455 0.00 0.00 35.77 3.41
8450 19418 4.217334 ACGTGAATGCATGGTCAATTTGTA 59.783 37.500 0.00 0.00 35.29 2.41
8504 19492 5.590259 ACAGTGAGTAAATTCAGTTTGCAGT 59.410 36.000 0.00 0.00 35.18 4.40
8506 19494 7.072030 CAGTGAGTAAATTCAGTTTGCAGTAC 58.928 38.462 0.00 0.00 35.18 2.73
8515 19503 2.033747 CAGTTTGCAGTACAGTCACGTG 60.034 50.000 9.94 9.94 0.00 4.49
8525 19513 3.018598 ACAGTCACGTGATGAAGAGTG 57.981 47.619 23.12 13.26 39.72 3.51
8530 19518 0.671781 ACGTGATGAAGAGTGCCTGC 60.672 55.000 0.00 0.00 0.00 4.85
8586 21583 6.746745 TTTAGAAAACTAGGTAATTGCCCG 57.253 37.500 9.20 3.52 0.00 6.13
8588 21585 4.007659 AGAAAACTAGGTAATTGCCCGTG 58.992 43.478 9.20 2.50 0.00 4.94
8589 21586 1.746470 AACTAGGTAATTGCCCGTGC 58.254 50.000 9.20 0.00 38.26 5.34
8590 21587 0.461339 ACTAGGTAATTGCCCGTGCG 60.461 55.000 9.20 0.00 41.78 5.34
8592 21589 0.036199 TAGGTAATTGCCCGTGCGTT 60.036 50.000 9.20 0.00 41.78 4.84
8593 21590 1.154112 GGTAATTGCCCGTGCGTTG 60.154 57.895 0.16 0.00 41.78 4.10
8594 21591 1.799916 GTAATTGCCCGTGCGTTGC 60.800 57.895 0.00 0.00 41.78 4.17
8595 21592 2.261586 TAATTGCCCGTGCGTTGCA 61.262 52.632 2.68 2.68 41.78 4.08
8597 21594 3.839642 ATTGCCCGTGCGTTGCAAC 62.840 57.895 19.89 19.89 46.60 4.17
8610 21607 3.726291 GTTGCAACGGGGCATAAATAT 57.274 42.857 14.90 0.00 44.48 1.28
8613 21610 3.561143 TGCAACGGGGCATAAATATTCT 58.439 40.909 0.00 0.00 39.25 2.40
8614 21611 4.720046 TGCAACGGGGCATAAATATTCTA 58.280 39.130 0.00 0.00 39.25 2.10
8617 21614 6.092748 GCAACGGGGCATAAATATTCTAATG 58.907 40.000 0.00 0.00 0.00 1.90
8619 21616 5.887754 ACGGGGCATAAATATTCTAATGGT 58.112 37.500 0.00 0.00 0.00 3.55
8620 21617 6.311735 ACGGGGCATAAATATTCTAATGGTT 58.688 36.000 0.00 0.00 0.00 3.67
8623 21620 7.362056 CGGGGCATAAATATTCTAATGGTTCAG 60.362 40.741 0.00 0.00 0.00 3.02
8624 21621 7.451566 GGGGCATAAATATTCTAATGGTTCAGT 59.548 37.037 0.00 0.00 0.00 3.41
8625 21622 9.515226 GGGCATAAATATTCTAATGGTTCAGTA 57.485 33.333 0.00 0.00 0.00 2.74
8635 21632 4.989279 AATGGTTCAGTACAATCATGGC 57.011 40.909 0.00 0.00 27.03 4.40
8636 21633 3.431673 TGGTTCAGTACAATCATGGCA 57.568 42.857 0.00 0.00 0.00 4.92
8638 21635 4.148079 TGGTTCAGTACAATCATGGCAAA 58.852 39.130 0.00 0.00 0.00 3.68
8639 21636 4.771577 TGGTTCAGTACAATCATGGCAAAT 59.228 37.500 0.00 0.00 0.00 2.32
8640 21637 5.948758 TGGTTCAGTACAATCATGGCAAATA 59.051 36.000 0.00 0.00 0.00 1.40
8641 21638 6.606796 TGGTTCAGTACAATCATGGCAAATAT 59.393 34.615 0.00 0.00 0.00 1.28
8642 21639 7.777440 TGGTTCAGTACAATCATGGCAAATATA 59.223 33.333 0.00 0.00 0.00 0.86
8643 21640 8.796475 GGTTCAGTACAATCATGGCAAATATAT 58.204 33.333 0.00 0.00 0.00 0.86
8646 21643 9.448438 TCAGTACAATCATGGCAAATATATACC 57.552 33.333 0.00 0.00 0.00 2.73
8658 21655 9.515226 TGGCAAATATATACCTTTACAATCCTC 57.485 33.333 0.00 0.00 0.00 3.71
8664 21661 7.986085 ATATACCTTTACAATCCTCATGCAC 57.014 36.000 0.00 0.00 0.00 4.57
8667 21664 4.641989 ACCTTTACAATCCTCATGCACATC 59.358 41.667 0.00 0.00 0.00 3.06
8668 21665 4.885907 CCTTTACAATCCTCATGCACATCT 59.114 41.667 0.00 0.00 0.00 2.90
8669 21666 5.359009 CCTTTACAATCCTCATGCACATCTT 59.641 40.000 0.00 0.00 0.00 2.40
8670 21667 5.823209 TTACAATCCTCATGCACATCTTG 57.177 39.130 0.00 0.00 0.00 3.02
8681 21678 3.241067 GCACATCTTGCCAAATCATGT 57.759 42.857 0.00 0.00 46.63 3.21
8682 21679 3.184541 GCACATCTTGCCAAATCATGTC 58.815 45.455 0.00 0.00 46.63 3.06
8683 21680 3.119245 GCACATCTTGCCAAATCATGTCT 60.119 43.478 0.00 0.00 46.63 3.41
8685 21682 4.862574 CACATCTTGCCAAATCATGTCTTG 59.137 41.667 0.00 0.00 0.00 3.02
8687 21684 5.011329 ACATCTTGCCAAATCATGTCTTGTT 59.989 36.000 0.00 0.00 0.00 2.83
8688 21685 5.125100 TCTTGCCAAATCATGTCTTGTTC 57.875 39.130 0.00 0.00 0.00 3.18
8689 21686 4.583907 TCTTGCCAAATCATGTCTTGTTCA 59.416 37.500 0.00 0.00 0.00 3.18
8691 21688 6.433716 TCTTGCCAAATCATGTCTTGTTCATA 59.566 34.615 0.00 0.00 0.00 2.15
8692 21689 6.587206 TGCCAAATCATGTCTTGTTCATAA 57.413 33.333 0.00 0.00 0.00 1.90
8693 21690 6.990798 TGCCAAATCATGTCTTGTTCATAAA 58.009 32.000 0.00 0.00 0.00 1.40
8694 21691 6.867816 TGCCAAATCATGTCTTGTTCATAAAC 59.132 34.615 0.00 0.00 35.85 2.01
8695 21692 6.867816 GCCAAATCATGTCTTGTTCATAAACA 59.132 34.615 0.00 0.00 43.58 2.83
8696 21693 7.546667 GCCAAATCATGTCTTGTTCATAAACAT 59.453 33.333 0.00 0.00 44.59 2.71
8697 21694 9.426837 CCAAATCATGTCTTGTTCATAAACATT 57.573 29.630 0.00 0.00 44.59 2.71
8702 21699 9.013229 TCATGTCTTGTTCATAAACATTTAGCT 57.987 29.630 0.00 0.00 44.59 3.32
8705 21702 9.719355 TGTCTTGTTCATAAACATTTAGCTAGA 57.281 29.630 0.00 0.00 44.59 2.43
8710 21707 9.008965 TGTTCATAAACATTTAGCTAGAAAGCA 57.991 29.630 0.00 0.00 44.72 3.91
8711 21708 9.840427 GTTCATAAACATTTAGCTAGAAAGCAA 57.160 29.630 0.00 0.00 42.09 3.91
8740 21737 1.134220 TGTAATGCATCCTTCGGTCCC 60.134 52.381 0.00 0.00 0.00 4.46
8741 21738 1.134220 GTAATGCATCCTTCGGTCCCA 60.134 52.381 0.00 0.00 0.00 4.37
8742 21739 0.552848 AATGCATCCTTCGGTCCCAT 59.447 50.000 0.00 0.00 0.00 4.00
8743 21740 0.552848 ATGCATCCTTCGGTCCCATT 59.447 50.000 0.00 0.00 0.00 3.16
8744 21741 0.331278 TGCATCCTTCGGTCCCATTT 59.669 50.000 0.00 0.00 0.00 2.32
8745 21742 1.272425 TGCATCCTTCGGTCCCATTTT 60.272 47.619 0.00 0.00 0.00 1.82
8746 21743 1.824852 GCATCCTTCGGTCCCATTTTT 59.175 47.619 0.00 0.00 0.00 1.94
8747 21744 3.020984 GCATCCTTCGGTCCCATTTTTA 58.979 45.455 0.00 0.00 0.00 1.52
8748 21745 3.636764 GCATCCTTCGGTCCCATTTTTAT 59.363 43.478 0.00 0.00 0.00 1.40
8750 21747 5.476945 GCATCCTTCGGTCCCATTTTTATAT 59.523 40.000 0.00 0.00 0.00 0.86
8752 21749 5.381757 TCCTTCGGTCCCATTTTTATATGG 58.618 41.667 0.00 0.00 43.90 2.74
8753 21750 5.132985 TCCTTCGGTCCCATTTTTATATGGA 59.867 40.000 4.26 0.00 46.63 3.41
8754 21751 6.010219 CCTTCGGTCCCATTTTTATATGGAT 58.990 40.000 4.26 0.00 46.63 3.41
8755 21752 7.017750 TCCTTCGGTCCCATTTTTATATGGATA 59.982 37.037 4.26 0.00 46.63 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.776322 TCATTGGGCCGCGTCAGG 62.776 66.667 4.92 0.00 0.00 3.86
9 10 2.514592 ATCATTGGGCCGCGTCAG 60.515 61.111 4.92 0.00 0.00 3.51
10 11 2.607411 ATCATCATTGGGCCGCGTCA 62.607 55.000 4.92 0.00 0.00 4.35
11 12 1.893808 ATCATCATTGGGCCGCGTC 60.894 57.895 4.92 0.00 0.00 5.19
12 13 2.188829 CATCATCATTGGGCCGCGT 61.189 57.895 4.92 0.00 0.00 6.01
13 14 2.640989 CATCATCATTGGGCCGCG 59.359 61.111 0.00 0.00 0.00 6.46
14 15 3.045142 CCATCATCATTGGGCCGC 58.955 61.111 0.00 0.00 0.00 6.53
15 16 3.045142 GCCATCATCATTGGGCCG 58.955 61.111 0.00 0.00 40.55 6.13
18 19 0.830444 CCAGGGCCATCATCATTGGG 60.830 60.000 6.18 0.00 34.66 4.12
19 20 0.830444 CCCAGGGCCATCATCATTGG 60.830 60.000 6.18 1.01 37.31 3.16
20 21 1.469335 GCCCAGGGCCATCATCATTG 61.469 60.000 21.62 0.00 44.06 2.82
21 22 1.152398 GCCCAGGGCCATCATCATT 60.152 57.895 21.62 0.00 44.06 2.57
22 23 2.524559 GCCCAGGGCCATCATCAT 59.475 61.111 21.62 0.00 44.06 2.45
32 33 0.179009 CCATATGAGTGTGCCCAGGG 60.179 60.000 3.65 0.00 0.00 4.45
33 34 0.548031 ACCATATGAGTGTGCCCAGG 59.452 55.000 3.65 0.00 0.00 4.45
34 35 1.475751 GGACCATATGAGTGTGCCCAG 60.476 57.143 3.65 0.00 0.00 4.45
35 36 0.546122 GGACCATATGAGTGTGCCCA 59.454 55.000 3.65 0.00 0.00 5.36
36 37 0.546122 TGGACCATATGAGTGTGCCC 59.454 55.000 3.65 0.00 0.00 5.36
37 38 1.065491 TGTGGACCATATGAGTGTGCC 60.065 52.381 3.65 0.00 0.00 5.01
38 39 2.401583 TGTGGACCATATGAGTGTGC 57.598 50.000 3.65 0.00 0.00 4.57
39 40 4.380531 GGTATGTGGACCATATGAGTGTG 58.619 47.826 13.66 0.00 38.29 3.82
40 41 3.391296 GGGTATGTGGACCATATGAGTGT 59.609 47.826 13.66 0.00 41.73 3.55
41 42 3.648067 AGGGTATGTGGACCATATGAGTG 59.352 47.826 13.66 0.00 41.73 3.51
42 43 3.941629 AGGGTATGTGGACCATATGAGT 58.058 45.455 13.66 0.00 41.73 3.41
43 44 4.347876 TGAAGGGTATGTGGACCATATGAG 59.652 45.833 13.66 0.00 41.73 2.90
44 45 4.302930 TGAAGGGTATGTGGACCATATGA 58.697 43.478 13.66 0.00 41.73 2.15
45 46 4.705110 TGAAGGGTATGTGGACCATATG 57.295 45.455 13.66 0.00 41.73 1.78
46 47 6.213600 GTCTATGAAGGGTATGTGGACCATAT 59.786 42.308 8.92 8.92 41.73 1.78
47 48 5.542635 GTCTATGAAGGGTATGTGGACCATA 59.457 44.000 0.00 0.00 41.73 2.74
48 49 4.348168 GTCTATGAAGGGTATGTGGACCAT 59.652 45.833 0.00 0.00 41.73 3.55
49 50 3.709653 GTCTATGAAGGGTATGTGGACCA 59.290 47.826 0.00 0.00 41.73 4.02
50 51 3.071167 GGTCTATGAAGGGTATGTGGACC 59.929 52.174 0.00 0.00 38.93 4.46
51 52 3.243771 CGGTCTATGAAGGGTATGTGGAC 60.244 52.174 0.00 0.00 0.00 4.02
52 53 2.963101 CGGTCTATGAAGGGTATGTGGA 59.037 50.000 0.00 0.00 0.00 4.02
53 54 2.548067 GCGGTCTATGAAGGGTATGTGG 60.548 54.545 0.00 0.00 0.00 4.17
54 55 2.548067 GGCGGTCTATGAAGGGTATGTG 60.548 54.545 0.00 0.00 0.00 3.21
55 56 1.692519 GGCGGTCTATGAAGGGTATGT 59.307 52.381 0.00 0.00 0.00 2.29
56 57 1.002087 GGGCGGTCTATGAAGGGTATG 59.998 57.143 0.00 0.00 0.00 2.39
57 58 1.349067 GGGCGGTCTATGAAGGGTAT 58.651 55.000 0.00 0.00 0.00 2.73
58 59 0.031917 TGGGCGGTCTATGAAGGGTA 60.032 55.000 0.00 0.00 0.00 3.69
63 64 2.908015 GGCTGGGCGGTCTATGAA 59.092 61.111 0.00 0.00 0.00 2.57
106 107 1.741770 GATGGCGCTCCGACTTGTT 60.742 57.895 7.64 0.00 35.04 2.83
107 108 2.125512 GATGGCGCTCCGACTTGT 60.126 61.111 7.64 0.00 35.04 3.16
110 111 3.893763 CTCGATGGCGCTCCGACT 61.894 66.667 7.64 0.00 35.04 4.18
111 112 2.718993 CTACTCGATGGCGCTCCGAC 62.719 65.000 7.64 0.00 37.46 4.79
115 116 2.355244 GGCTACTCGATGGCGCTC 60.355 66.667 7.64 0.00 35.08 5.03
140 151 4.402528 CCATGGCCGTTCGTCCCA 62.403 66.667 0.00 4.80 0.00 4.37
167 178 2.031012 CTCAACTGCTCGTGGGCA 59.969 61.111 0.00 0.00 40.15 5.36
171 182 1.143305 CACCTTCTCAACTGCTCGTG 58.857 55.000 0.00 0.00 0.00 4.35
177 188 3.665190 GAAGTACCCACCTTCTCAACTG 58.335 50.000 0.00 0.00 36.29 3.16
178 189 2.299297 CGAAGTACCCACCTTCTCAACT 59.701 50.000 0.00 0.00 36.91 3.16
179 190 2.685100 CGAAGTACCCACCTTCTCAAC 58.315 52.381 0.00 0.00 36.91 3.18
180 191 1.001633 GCGAAGTACCCACCTTCTCAA 59.998 52.381 0.00 0.00 36.91 3.02
181 192 0.606604 GCGAAGTACCCACCTTCTCA 59.393 55.000 0.00 0.00 36.91 3.27
182 193 0.108281 GGCGAAGTACCCACCTTCTC 60.108 60.000 0.00 0.00 36.91 2.87
183 194 0.834687 TGGCGAAGTACCCACCTTCT 60.835 55.000 0.00 0.00 36.91 2.85
189 202 2.871096 AAAGAATGGCGAAGTACCCA 57.129 45.000 0.00 0.00 35.21 4.51
193 206 6.578944 TGCTTCTATAAAGAATGGCGAAGTA 58.421 36.000 0.00 0.00 40.92 2.24
199 212 8.796475 TGGATATTTGCTTCTATAAAGAATGGC 58.204 33.333 0.00 0.00 40.92 4.40
240 253 7.658179 TCGATAGCTCAATTTGATTCATACC 57.342 36.000 0.00 0.00 0.00 2.73
243 256 9.887629 AGATATCGATAGCTCAATTTGATTCAT 57.112 29.630 17.25 0.00 0.00 2.57
253 266 9.764363 ACACAAATTTAGATATCGATAGCTCAA 57.236 29.630 25.42 20.84 30.67 3.02
256 269 9.935241 ATCACACAAATTTAGATATCGATAGCT 57.065 29.630 25.07 25.07 33.05 3.32
294 310 9.161629 CCCCGATGAGCTTTTAAATTTAATTTT 57.838 29.630 11.33 1.36 33.82 1.82
298 314 7.177744 AGTTCCCCGATGAGCTTTTAAATTTAA 59.822 33.333 6.54 6.54 0.00 1.52
310 326 1.534729 AAACAAGTTCCCCGATGAGC 58.465 50.000 0.00 0.00 0.00 4.26
311 327 2.678336 GCTAAACAAGTTCCCCGATGAG 59.322 50.000 0.00 0.00 0.00 2.90
313 329 1.396996 CGCTAAACAAGTTCCCCGATG 59.603 52.381 0.00 0.00 0.00 3.84
315 331 0.320946 CCGCTAAACAAGTTCCCCGA 60.321 55.000 0.00 0.00 0.00 5.14
353 370 9.234827 ACGGCACTTTATACCTTAACTTTTTAT 57.765 29.630 0.00 0.00 0.00 1.40
354 371 8.620116 ACGGCACTTTATACCTTAACTTTTTA 57.380 30.769 0.00 0.00 0.00 1.52
355 372 7.514784 ACGGCACTTTATACCTTAACTTTTT 57.485 32.000 0.00 0.00 0.00 1.94
356 373 7.514784 AACGGCACTTTATACCTTAACTTTT 57.485 32.000 0.00 0.00 0.00 2.27
357 374 7.514784 AAACGGCACTTTATACCTTAACTTT 57.485 32.000 0.00 0.00 0.00 2.66
358 375 8.797350 ATAAACGGCACTTTATACCTTAACTT 57.203 30.769 0.00 0.00 0.00 2.66
372 389 2.500098 TGAGCCTCTTATAAACGGCACT 59.500 45.455 20.65 6.75 44.85 4.40
373 390 2.901249 TGAGCCTCTTATAAACGGCAC 58.099 47.619 20.65 16.45 44.85 5.01
374 391 3.620427 TTGAGCCTCTTATAAACGGCA 57.380 42.857 20.65 4.71 44.85 5.69
375 392 4.574828 TCAATTGAGCCTCTTATAAACGGC 59.425 41.667 3.38 14.02 42.79 5.68
377 394 6.662414 TGTCAATTGAGCCTCTTATAAACG 57.338 37.500 8.80 0.00 0.00 3.60
378 395 6.317391 AGCTGTCAATTGAGCCTCTTATAAAC 59.683 38.462 8.80 0.00 35.69 2.01
381 398 5.620738 AGCTGTCAATTGAGCCTCTTATA 57.379 39.130 8.80 0.00 35.69 0.98
392 411 2.295349 ACCAAGAGCAAGCTGTCAATTG 59.705 45.455 0.00 0.00 0.00 2.32
394 413 1.884579 CACCAAGAGCAAGCTGTCAAT 59.115 47.619 0.00 0.00 0.00 2.57
395 414 1.311859 CACCAAGAGCAAGCTGTCAA 58.688 50.000 0.00 0.00 0.00 3.18
396 415 0.535780 CCACCAAGAGCAAGCTGTCA 60.536 55.000 0.00 0.00 0.00 3.58
397 416 1.860484 GCCACCAAGAGCAAGCTGTC 61.860 60.000 0.00 0.00 0.00 3.51
398 417 1.900498 GCCACCAAGAGCAAGCTGT 60.900 57.895 0.00 0.00 0.00 4.40
399 418 2.960170 GCCACCAAGAGCAAGCTG 59.040 61.111 0.00 0.00 0.00 4.24
400 419 2.670934 CGCCACCAAGAGCAAGCT 60.671 61.111 0.00 0.00 0.00 3.74
401 420 2.669569 TCGCCACCAAGAGCAAGC 60.670 61.111 0.00 0.00 0.00 4.01
402 421 2.037136 CCTCGCCACCAAGAGCAAG 61.037 63.158 0.00 0.00 33.39 4.01
470 489 4.445545 GAAAGGGAGCGCGCGTTG 62.446 66.667 32.35 3.57 0.00 4.10
471 490 4.681978 AGAAAGGGAGCGCGCGTT 62.682 61.111 32.35 27.63 0.00 4.84
472 491 4.681978 AAGAAAGGGAGCGCGCGT 62.682 61.111 32.35 18.26 0.00 6.01
473 492 3.423154 AAAGAAAGGGAGCGCGCG 61.423 61.111 28.44 28.44 0.00 6.86
474 493 2.176792 CAAAGAAAGGGAGCGCGC 59.823 61.111 26.66 26.66 0.00 6.86
475 494 0.951040 AGTCAAAGAAAGGGAGCGCG 60.951 55.000 0.00 0.00 0.00 6.86
476 495 0.519077 CAGTCAAAGAAAGGGAGCGC 59.481 55.000 0.00 0.00 0.00 5.92
477 496 1.801178 GTCAGTCAAAGAAAGGGAGCG 59.199 52.381 0.00 0.00 0.00 5.03
478 497 2.550180 GTGTCAGTCAAAGAAAGGGAGC 59.450 50.000 0.00 0.00 0.00 4.70
479 498 2.802816 CGTGTCAGTCAAAGAAAGGGAG 59.197 50.000 0.00 0.00 0.00 4.30
480 499 2.833794 CGTGTCAGTCAAAGAAAGGGA 58.166 47.619 0.00 0.00 0.00 4.20
481 500 1.264288 GCGTGTCAGTCAAAGAAAGGG 59.736 52.381 0.00 0.00 0.00 3.95
482 501 1.070577 CGCGTGTCAGTCAAAGAAAGG 60.071 52.381 0.00 0.00 0.00 3.11
483 502 1.070577 CCGCGTGTCAGTCAAAGAAAG 60.071 52.381 4.92 0.00 0.00 2.62
522 541 0.457166 CACAAGCCATTGCGTCATGG 60.457 55.000 9.92 9.92 44.33 3.66
1011 1030 4.244802 GCGAGCGAGAGAGACGGG 62.245 72.222 0.00 0.00 0.00 5.28
1133 1212 1.073603 TCCAACCCGTAAACCCGAAAT 59.926 47.619 0.00 0.00 0.00 2.17
1137 1216 1.536940 AATTCCAACCCGTAAACCCG 58.463 50.000 0.00 0.00 0.00 5.28
1163 1242 3.508840 GAAATCCACAGGCGGCGG 61.509 66.667 9.78 7.74 0.00 6.13
1164 1243 2.587322 TAGGAAATCCACAGGCGGCG 62.587 60.000 0.51 0.51 38.89 6.46
1165 1244 0.393808 TTAGGAAATCCACAGGCGGC 60.394 55.000 0.00 0.00 38.89 6.53
1187 1266 7.337718 CAATCGAGGTGAAATTAGAACATACG 58.662 38.462 0.00 0.00 0.00 3.06
1188 1267 7.126398 GCAATCGAGGTGAAATTAGAACATAC 58.874 38.462 3.17 0.00 0.00 2.39
1215 1294 2.291457 AAAAACGGCGGCAACAAGCT 62.291 50.000 13.24 0.00 44.79 3.74
1224 1303 1.536462 CGAGCAAACAAAAACGGCGG 61.536 55.000 13.24 0.00 0.00 6.13
1225 1304 1.836800 CGAGCAAACAAAAACGGCG 59.163 52.632 4.80 4.80 0.00 6.46
1229 1333 0.492737 CGACGCGAGCAAACAAAAAC 59.507 50.000 15.93 0.00 0.00 2.43
1233 1337 1.590525 AGACGACGCGAGCAAACAA 60.591 52.632 15.93 0.00 0.00 2.83
1234 1338 2.027024 AGACGACGCGAGCAAACA 59.973 55.556 15.93 0.00 0.00 2.83
1235 1339 1.344942 ATCAGACGACGCGAGCAAAC 61.345 55.000 15.93 0.00 0.00 2.93
1238 1342 1.071019 GAAATCAGACGACGCGAGCA 61.071 55.000 15.93 0.00 0.00 4.26
1243 1347 2.695646 GGCGAAATCAGACGACGC 59.304 61.111 0.00 0.00 46.79 5.19
1262 1366 2.031465 TCGGAACCGAGCAAACCC 59.969 61.111 12.04 0.00 44.01 4.11
1292 1396 1.538047 CAACAGGGGATCAGGTGTTG 58.462 55.000 14.97 14.97 42.66 3.33
1370 1516 4.202245 TCAAATAACTTGACTCGGGGAG 57.798 45.455 0.00 0.00 39.20 4.30
1518 1683 4.039366 GCCTACTCGGAGAAATACCAAGAT 59.961 45.833 12.86 0.00 34.09 2.40
1521 1690 2.433239 GGCCTACTCGGAGAAATACCAA 59.567 50.000 12.86 0.00 34.09 3.67
1542 1714 3.935203 AGCATAACAACCAGATCGACTTG 59.065 43.478 0.00 0.00 0.00 3.16
1696 1887 1.337384 ATACGCCATGCCTGAGACCA 61.337 55.000 0.00 0.00 0.00 4.02
1795 2009 6.809630 AAACAGGAGAACAAGAGAATTAGC 57.190 37.500 0.00 0.00 0.00 3.09
1837 2053 6.830912 TCTGGGATAACAATAGACCAGATTG 58.169 40.000 7.10 0.00 46.79 2.67
1841 2057 5.059833 GCTTCTGGGATAACAATAGACCAG 58.940 45.833 0.00 0.00 45.18 4.00
1865 2084 3.545078 GCAGCTTAATTTCTGTCATTGCG 59.455 43.478 0.00 0.00 33.09 4.85
1998 2254 0.679002 ATGCAGCCTGGACACATCAC 60.679 55.000 0.00 0.00 0.00 3.06
2070 2326 3.569491 AGGGATGCCAATTGATACCTTG 58.431 45.455 7.12 0.00 0.00 3.61
2124 2416 2.587194 CTCTCGAATGCAGGGGCG 60.587 66.667 0.00 0.00 45.35 6.13
2235 2528 0.108424 CAGGTGCCTCTGTAGCAGAC 60.108 60.000 0.00 0.00 41.87 3.51
2303 2598 1.995376 AAAGGTTCCGGTTTGCTCAT 58.005 45.000 0.00 0.00 0.00 2.90
2343 2638 1.578423 GTCAAGCTGGCTGTCTTGC 59.422 57.895 17.29 11.80 39.47 4.01
2397 2692 0.449388 CAGATTCCACTTGGCGCTTC 59.551 55.000 7.64 0.00 34.44 3.86
2443 2738 2.158928 CCCAGAGCTTCATCCTGAGAAG 60.159 54.545 1.08 0.00 44.08 2.85
2542 2837 3.571571 GTCCATTGGCGGTTAAACTTTC 58.428 45.455 0.00 0.00 0.00 2.62
2593 3126 7.775093 TGTCTTGATATTATCAGGAAAAGGTGG 59.225 37.037 17.23 0.00 45.30 4.61
2647 3345 4.036852 GGATGGTTTACTCTTTGCATAGGC 59.963 45.833 4.23 0.00 41.68 3.93
2703 3402 4.459337 ACAGGCCTTATTTCAACTACTTGC 59.541 41.667 0.00 0.00 0.00 4.01
2768 3467 1.765314 TCTGGCTCTTATCCTGCTTCC 59.235 52.381 0.00 0.00 0.00 3.46
3006 3706 1.049289 GCCGTCCTTCCCTACCATCT 61.049 60.000 0.00 0.00 0.00 2.90
3041 3741 7.749377 TTCTCTCCCTTATTTTCTGATGGTA 57.251 36.000 0.00 0.00 0.00 3.25
3051 3754 5.516768 GGAGGTGGTTTTCTCTCCCTTATTT 60.517 44.000 0.00 0.00 39.75 1.40
3133 3837 1.369091 CCATTCAGCCGTTTCTCCCG 61.369 60.000 0.00 0.00 0.00 5.14
3204 3908 3.469008 TCACCTTCATTCAGTGTCGTT 57.531 42.857 0.00 0.00 33.21 3.85
3326 4031 3.084786 GCTTTATGTGCCTGAGGACTTT 58.915 45.455 0.65 0.00 0.00 2.66
3330 4035 1.679944 GCTGCTTTATGTGCCTGAGGA 60.680 52.381 0.65 0.00 0.00 3.71
3453 4401 2.427506 ACGGCAAACTTCTCTCCATTC 58.572 47.619 0.00 0.00 0.00 2.67
3455 4403 2.427506 GAACGGCAAACTTCTCTCCAT 58.572 47.619 0.00 0.00 0.00 3.41
3472 4420 1.401905 GAATCCGTCTGCCAATGGAAC 59.598 52.381 2.05 0.00 37.85 3.62
3473 4421 1.004161 TGAATCCGTCTGCCAATGGAA 59.996 47.619 2.05 0.00 37.85 3.53
3487 4436 4.272991 GTCATCTTGCATGTCTCTGAATCC 59.727 45.833 0.00 0.00 0.00 3.01
3547 4496 3.627577 AGCATTTTACTTCTATGGCGGTG 59.372 43.478 0.00 0.00 0.00 4.94
3646 4599 1.043116 CCTACCGATGGCTCAGACCA 61.043 60.000 0.00 0.00 45.82 4.02
3761 4732 4.221924 TCCGATCCTGAATGTCAACAGTAA 59.778 41.667 8.77 0.11 32.93 2.24
3771 4742 5.182001 GGTTTTATCCATCCGATCCTGAATG 59.818 44.000 0.00 0.00 31.92 2.67
3774 4745 3.244078 CGGTTTTATCCATCCGATCCTGA 60.244 47.826 0.00 0.00 44.86 3.86
3918 4889 3.887621 TCAGTATTCTGACCTTTCCCG 57.112 47.619 0.00 0.00 44.58 5.14
3950 4921 7.139896 TGTACAAAGTATTAATGTGCACTGG 57.860 36.000 19.41 0.00 35.27 4.00
3953 4924 7.026562 TGCATGTACAAAGTATTAATGTGCAC 58.973 34.615 10.75 10.75 41.33 4.57
4040 5012 6.646267 TCTGTAAACTAACACTGTCACCTTT 58.354 36.000 0.00 0.00 0.00 3.11
4094 6887 8.232913 AGAAGAATGTGTTCTAGGAGAGTATC 57.767 38.462 0.00 0.00 43.80 2.24
4156 6956 7.455058 TGCCAATAGTTTTAACTGGTTCTAGA 58.545 34.615 5.41 0.00 40.07 2.43
4157 6957 7.606456 TCTGCCAATAGTTTTAACTGGTTCTAG 59.394 37.037 5.41 0.00 40.07 2.43
4160 6960 6.569179 TCTGCCAATAGTTTTAACTGGTTC 57.431 37.500 5.41 0.00 40.07 3.62
4161 6961 5.048013 GCTCTGCCAATAGTTTTAACTGGTT 60.048 40.000 5.41 0.00 40.07 3.67
4163 6963 4.702131 AGCTCTGCCAATAGTTTTAACTGG 59.298 41.667 5.41 0.88 40.07 4.00
4164 6964 5.163713 GGAGCTCTGCCAATAGTTTTAACTG 60.164 44.000 14.64 0.00 40.07 3.16
4165 6965 4.944317 GGAGCTCTGCCAATAGTTTTAACT 59.056 41.667 14.64 0.29 42.91 2.24
4166 6966 4.944317 AGGAGCTCTGCCAATAGTTTTAAC 59.056 41.667 14.64 0.00 0.00 2.01
4167 6967 4.943705 CAGGAGCTCTGCCAATAGTTTTAA 59.056 41.667 14.64 0.00 36.60 1.52
4168 6968 4.517285 CAGGAGCTCTGCCAATAGTTTTA 58.483 43.478 14.64 0.00 36.60 1.52
4171 6971 2.706339 CAGGAGCTCTGCCAATAGTT 57.294 50.000 14.64 0.00 36.60 2.24
4298 7109 4.697828 TCTGCATAATTACGCTTTGGTTCA 59.302 37.500 5.01 0.00 0.00 3.18
4299 7110 5.028375 GTCTGCATAATTACGCTTTGGTTC 58.972 41.667 5.01 0.00 0.00 3.62
4814 11675 7.709269 TTTGCGAGATTTATATCCTACACAC 57.291 36.000 0.00 0.00 0.00 3.82
4857 11718 2.039613 CTGGAGGAGATTTATCAGGGCC 59.960 54.545 0.00 0.00 0.00 5.80
4963 11824 7.544566 CGCAAGAAGAGTAATCAACTTTACCTA 59.455 37.037 0.00 0.00 38.08 3.08
5028 11892 6.500684 TCTTGTGTTCCTGAATGAATTAGC 57.499 37.500 0.00 0.00 0.00 3.09
5664 12540 2.756760 GTGGCACAATGGATCAGAACAT 59.243 45.455 13.86 0.00 44.16 2.71
5775 12675 5.221342 ACAGGAATCGGATCATGACTAACTC 60.221 44.000 0.00 0.00 34.85 3.01
5923 13392 3.232213 TGCTTCAGTATTCAGACGGTC 57.768 47.619 0.00 0.00 0.00 4.79
5925 13394 6.662414 TTAAATGCTTCAGTATTCAGACGG 57.338 37.500 0.00 0.00 30.07 4.79
5946 13415 9.806203 CAAATTAATCTTTCATGGCACTGATTA 57.194 29.630 0.00 0.00 0.00 1.75
6004 13474 7.047891 CCAAACTATAGTGGATAACTGCAGAA 58.952 38.462 23.35 8.48 40.26 3.02
6081 13553 4.701956 ATACACGCCCAAATCAGAAAAG 57.298 40.909 0.00 0.00 0.00 2.27
6150 13622 9.872684 AGATGTTTTGGATACTTCAATATGGAT 57.127 29.630 0.00 0.00 37.61 3.41
6276 14102 4.501915 CGACTAACCTTGTCAAACCTACCA 60.502 45.833 0.00 0.00 34.37 3.25
6289 14117 1.142262 ACCAAACAGGCGACTAACCTT 59.858 47.619 0.00 0.00 43.14 3.50
6363 14370 9.736023 GAAACAACAGAAGACATGTAAGAAAAT 57.264 29.630 0.00 0.00 0.00 1.82
6371 14378 8.682936 ATTAAGAGAAACAACAGAAGACATGT 57.317 30.769 0.00 0.00 0.00 3.21
6540 14551 4.871993 AAGTTCTGCATGATAAGCTTCG 57.128 40.909 0.00 0.00 0.00 3.79
6546 14557 6.313519 ACTCCCTTAAGTTCTGCATGATAA 57.686 37.500 0.00 0.00 0.00 1.75
6576 14587 8.833493 GGTTTCAAGTTAGACTTACTTTGCTTA 58.167 33.333 4.13 0.00 36.03 3.09
6590 14602 7.591006 TCGCAAGTATAAGGTTTCAAGTTAG 57.409 36.000 0.00 0.00 39.48 2.34
6667 14683 6.279882 TGATTCAACATTTTTGGGAGTTCAC 58.720 36.000 0.00 0.00 0.00 3.18
6685 14701 7.340122 TGACAAAGGTTAACAACATGATTCA 57.660 32.000 8.10 0.00 0.00 2.57
6692 14708 5.048224 TCCGTTTTGACAAAGGTTAACAACA 60.048 36.000 8.10 0.00 0.00 3.33
6693 14709 5.400703 TCCGTTTTGACAAAGGTTAACAAC 58.599 37.500 8.10 0.00 0.00 3.32
6694 14710 5.640189 TCCGTTTTGACAAAGGTTAACAA 57.360 34.783 8.10 0.00 0.00 2.83
6824 14849 8.801299 TCTGATTTAACCACATTATTCAGCAAA 58.199 29.630 0.00 0.00 35.40 3.68
6886 14912 7.558161 TTCTTCTAATCATGTGCCAATGTAG 57.442 36.000 0.00 0.00 0.00 2.74
6887 14913 7.936496 TTTCTTCTAATCATGTGCCAATGTA 57.064 32.000 0.00 0.00 0.00 2.29
6934 14991 3.063997 CCAATGATAACGGTGAGCTCAAC 59.936 47.826 22.36 22.36 0.00 3.18
6937 15017 2.906354 ACCAATGATAACGGTGAGCTC 58.094 47.619 6.82 6.82 0.00 4.09
6945 15025 5.811399 TTTGCCTCTTACCAATGATAACG 57.189 39.130 0.00 0.00 0.00 3.18
6956 15036 6.455360 TGATTCATTCCATTTGCCTCTTAC 57.545 37.500 0.00 0.00 0.00 2.34
7024 15108 0.893727 ATCCTGGTGGCAAACGGTTC 60.894 55.000 0.00 0.00 0.00 3.62
7153 15247 5.523188 CCTTCTGAATCTCCGAGATTTTGAG 59.477 44.000 21.89 17.41 44.41 3.02
7168 15262 5.324409 TGATGTTTGCCTTACCTTCTGAAT 58.676 37.500 0.00 0.00 0.00 2.57
7207 15301 4.776349 ACCATTTGATCAATACCAGCGTA 58.224 39.130 9.40 0.00 0.00 4.42
7209 15303 5.505654 GGTTACCATTTGATCAATACCAGCG 60.506 44.000 9.40 0.00 0.00 5.18
7363 15466 2.810650 ACTCGTTTCGCCTTAGCTATG 58.189 47.619 0.00 0.00 36.60 2.23
7380 15483 3.130693 GTCTGTGATGTGGTACCCTACTC 59.869 52.174 10.07 1.76 0.00 2.59
7573 15707 2.161855 CATGCTTTAAGGCACTGGTGA 58.838 47.619 15.14 0.00 45.36 4.02
7582 15719 4.361451 AGAAATGCGTCATGCTTTAAGG 57.639 40.909 0.00 0.00 46.63 2.69
7589 15726 3.761657 TCATTGAAGAAATGCGTCATGC 58.238 40.909 0.00 0.00 44.63 4.06
7711 15895 5.435686 AAGATGCCACCAGATTAGTACAA 57.564 39.130 0.00 0.00 0.00 2.41
7718 15902 3.703052 GGAATCAAAGATGCCACCAGATT 59.297 43.478 0.00 0.00 0.00 2.40
7740 15924 0.956902 GGGGCATTGGCAAGCAAAAG 60.957 55.000 18.66 2.34 43.71 2.27
7761 15945 8.926710 TCTAATTTCTTCTCATCTCAACGAAAC 58.073 33.333 0.00 0.00 0.00 2.78
7766 15950 6.820656 TGCCTCTAATTTCTTCTCATCTCAAC 59.179 38.462 0.00 0.00 0.00 3.18
7793 15997 1.153086 CAGCCAGGCCAGACATACC 60.153 63.158 8.22 0.00 0.00 2.73
7815 17551 6.773638 AGGATCAAAGATGTCTACTGTTTGT 58.226 36.000 0.00 0.00 31.44 2.83
7851 17587 4.495422 ACAGACGTACATGAAGATGGAAC 58.505 43.478 0.00 0.00 33.39 3.62
7892 17628 1.606668 TCCCGTTTTGAATGCACTGTC 59.393 47.619 0.00 0.00 0.00 3.51
7898 17634 2.094906 GGTAGGTTCCCGTTTTGAATGC 60.095 50.000 0.00 0.00 0.00 3.56
7902 17638 2.302733 GGTAGGTAGGTTCCCGTTTTGA 59.697 50.000 0.00 0.00 0.00 2.69
7908 17644 0.828677 CCAAGGTAGGTAGGTTCCCG 59.171 60.000 0.00 0.00 0.00 5.14
7927 17667 3.438360 CAATTCCGTTATCTGCAAAGGC 58.562 45.455 0.00 0.00 41.68 4.35
7942 17682 4.464008 TGAGTATCTCCCATTGCAATTCC 58.536 43.478 9.83 0.00 34.92 3.01
7954 17694 6.909550 ACTTGTAGATCCATGAGTATCTCC 57.090 41.667 8.03 0.30 34.36 3.71
7961 17701 6.980978 ACGATGTTTACTTGTAGATCCATGAG 59.019 38.462 0.00 0.00 0.00 2.90
7963 17703 7.064609 ACAACGATGTTTACTTGTAGATCCATG 59.935 37.037 0.00 0.00 35.91 3.66
7981 17721 4.191544 AGAGAGAGAGAGAGACAACGATG 58.808 47.826 0.00 0.00 0.00 3.84
7983 17723 3.973206 AGAGAGAGAGAGAGACAACGA 57.027 47.619 0.00 0.00 0.00 3.85
7984 17724 5.601662 AGATAGAGAGAGAGAGAGACAACG 58.398 45.833 0.00 0.00 0.00 4.10
7985 17725 6.821388 AGAGATAGAGAGAGAGAGAGACAAC 58.179 44.000 0.00 0.00 0.00 3.32
7986 17726 6.841229 AGAGAGATAGAGAGAGAGAGAGACAA 59.159 42.308 0.00 0.00 0.00 3.18
7988 17728 6.348950 CGAGAGAGATAGAGAGAGAGAGAGAC 60.349 50.000 0.00 0.00 0.00 3.36
7989 17729 5.707764 CGAGAGAGATAGAGAGAGAGAGAGA 59.292 48.000 0.00 0.00 0.00 3.10
7990 17730 5.105957 CCGAGAGAGATAGAGAGAGAGAGAG 60.106 52.000 0.00 0.00 0.00 3.20
7991 17731 4.767409 CCGAGAGAGATAGAGAGAGAGAGA 59.233 50.000 0.00 0.00 0.00 3.10
7993 17733 3.258372 GCCGAGAGAGATAGAGAGAGAGA 59.742 52.174 0.00 0.00 0.00 3.10
7994 17734 3.589988 GCCGAGAGAGATAGAGAGAGAG 58.410 54.545 0.00 0.00 0.00 3.20
7995 17735 2.301870 GGCCGAGAGAGATAGAGAGAGA 59.698 54.545 0.00 0.00 0.00 3.10
7997 17737 2.038426 CTGGCCGAGAGAGATAGAGAGA 59.962 54.545 0.00 0.00 0.00 3.10
7998 17738 2.038426 TCTGGCCGAGAGAGATAGAGAG 59.962 54.545 0.00 0.00 0.00 3.20
8035 18719 2.358737 GAAGAGGCCCCGTGTGTG 60.359 66.667 0.00 0.00 0.00 3.82
8038 18722 3.692406 GTCGAAGAGGCCCCGTGT 61.692 66.667 0.00 0.00 36.95 4.49
8047 18731 3.182967 GTGATACTTGCTGGTCGAAGAG 58.817 50.000 0.00 0.00 36.95 2.85
8058 18742 2.069273 ACGTTCTGCTGTGATACTTGC 58.931 47.619 0.00 0.00 0.00 4.01
8063 18747 3.065510 GCTCTCTACGTTCTGCTGTGATA 59.934 47.826 0.00 0.00 0.00 2.15
8093 18792 3.531538 TGATTATTCGAGCGAGGCTTTT 58.468 40.909 0.00 0.00 39.88 2.27
8110 18809 2.978278 AGGAGGCTGCTAGCTAATGATT 59.022 45.455 17.23 0.00 41.99 2.57
8115 18814 1.826024 GCAGGAGGCTGCTAGCTAA 59.174 57.895 17.23 0.00 46.04 3.09
8116 18815 3.543537 GCAGGAGGCTGCTAGCTA 58.456 61.111 17.23 1.31 46.04 3.32
8156 18889 2.513666 TTGATGATGACCGCGGCC 60.514 61.111 28.58 17.03 0.00 6.13
8258 19219 5.104562 TCAGTTACACATATCGATCGACC 57.895 43.478 22.06 0.17 0.00 4.79
8268 19235 1.352114 GCGCCGTTCAGTTACACATA 58.648 50.000 0.00 0.00 0.00 2.29
8346 19314 4.252073 AGTAGGTACACGAGGCGATATAG 58.748 47.826 0.00 0.00 0.00 1.31
8347 19315 4.277515 AGTAGGTACACGAGGCGATATA 57.722 45.455 0.00 0.00 0.00 0.86
8354 19322 3.063180 CACGTAGAAGTAGGTACACGAGG 59.937 52.174 5.28 0.00 33.81 4.63
8375 19343 6.092122 CGATTACCAGTTTTATTCAGAGTGCA 59.908 38.462 0.00 0.00 0.00 4.57
8378 19346 6.313905 CAGCGATTACCAGTTTTATTCAGAGT 59.686 38.462 0.00 0.00 0.00 3.24
8406 19374 3.031013 TCAGTTTCCAGACAGACAGACA 58.969 45.455 0.00 0.00 0.00 3.41
8407 19375 3.385577 GTCAGTTTCCAGACAGACAGAC 58.614 50.000 0.00 0.00 36.44 3.51
8408 19376 2.034685 CGTCAGTTTCCAGACAGACAGA 59.965 50.000 0.00 0.00 36.27 3.41
8409 19377 2.223829 ACGTCAGTTTCCAGACAGACAG 60.224 50.000 0.00 0.00 36.27 3.51
8410 19378 1.754803 ACGTCAGTTTCCAGACAGACA 59.245 47.619 0.00 0.00 36.27 3.41
8411 19379 2.128035 CACGTCAGTTTCCAGACAGAC 58.872 52.381 0.00 0.00 34.48 3.51
8412 19380 2.028876 TCACGTCAGTTTCCAGACAGA 58.971 47.619 0.00 0.00 34.48 3.41
8413 19381 2.509052 TCACGTCAGTTTCCAGACAG 57.491 50.000 0.00 0.00 34.48 3.51
8414 19382 2.971660 TTCACGTCAGTTTCCAGACA 57.028 45.000 0.00 0.00 34.48 3.41
8415 19383 2.096218 GCATTCACGTCAGTTTCCAGAC 60.096 50.000 0.00 0.00 0.00 3.51
8416 19384 2.143122 GCATTCACGTCAGTTTCCAGA 58.857 47.619 0.00 0.00 0.00 3.86
8417 19385 1.872952 TGCATTCACGTCAGTTTCCAG 59.127 47.619 0.00 0.00 0.00 3.86
8418 19386 1.960417 TGCATTCACGTCAGTTTCCA 58.040 45.000 0.00 0.00 0.00 3.53
8419 19387 2.414559 CCATGCATTCACGTCAGTTTCC 60.415 50.000 0.00 0.00 0.00 3.13
8420 19388 2.226437 ACCATGCATTCACGTCAGTTTC 59.774 45.455 0.00 0.00 0.00 2.78
8421 19389 2.226437 GACCATGCATTCACGTCAGTTT 59.774 45.455 0.00 0.00 0.00 2.66
8427 19395 3.005684 ACAAATTGACCATGCATTCACGT 59.994 39.130 0.00 0.00 0.00 4.49
8428 19396 3.577667 ACAAATTGACCATGCATTCACG 58.422 40.909 0.00 0.00 0.00 4.35
8450 19418 7.040478 TCGAACCAAACTTGATTTCATCTTCAT 60.040 33.333 0.00 0.00 0.00 2.57
8463 19431 2.878406 ACTGTCCATCGAACCAAACTTG 59.122 45.455 0.00 0.00 0.00 3.16
8466 19434 2.480419 CTCACTGTCCATCGAACCAAAC 59.520 50.000 0.00 0.00 0.00 2.93
8504 19492 3.611766 GCACTCTTCATCACGTGACTGTA 60.612 47.826 22.71 12.66 36.32 2.74
8506 19494 1.723542 GCACTCTTCATCACGTGACTG 59.276 52.381 22.71 19.05 36.32 3.51
8515 19503 1.527034 TTGTGCAGGCACTCTTCATC 58.473 50.000 23.29 0.00 46.30 2.92
8525 19513 4.816786 ATTGATTTTTGTTTGTGCAGGC 57.183 36.364 0.00 0.00 0.00 4.85
8530 19518 8.070769 TGCATCATGAATTGATTTTTGTTTGTG 58.929 29.630 0.00 0.00 42.62 3.33
8536 19524 9.672086 AAAAAGTGCATCATGAATTGATTTTTG 57.328 25.926 16.63 3.89 42.62 2.44
8562 21559 6.716173 ACGGGCAATTACCTAGTTTTCTAAAA 59.284 34.615 0.00 0.00 31.45 1.52
8570 21567 1.746470 GCACGGGCAATTACCTAGTT 58.254 50.000 3.77 0.00 40.72 2.24
8577 21574 1.796190 TTGCAACGCACGGGCAATTA 61.796 50.000 11.77 0.00 42.12 1.40
8578 21575 3.144120 TTGCAACGCACGGGCAATT 62.144 52.632 11.77 0.00 42.12 2.32
8580 21577 4.560856 GTTGCAACGCACGGGCAA 62.561 61.111 14.90 16.74 44.50 4.52
8590 21587 3.726291 ATATTTATGCCCCGTTGCAAC 57.274 42.857 19.89 19.89 45.84 4.17
8592 21589 3.561143 AGAATATTTATGCCCCGTTGCA 58.439 40.909 0.00 0.00 46.94 4.08
8593 21590 5.699097 TTAGAATATTTATGCCCCGTTGC 57.301 39.130 0.00 0.00 0.00 4.17
8594 21591 6.208599 ACCATTAGAATATTTATGCCCCGTTG 59.791 38.462 0.00 0.00 0.00 4.10
8595 21592 6.311735 ACCATTAGAATATTTATGCCCCGTT 58.688 36.000 0.00 0.00 0.00 4.44
8596 21593 5.887754 ACCATTAGAATATTTATGCCCCGT 58.112 37.500 0.00 0.00 0.00 5.28
8597 21594 6.432783 TGAACCATTAGAATATTTATGCCCCG 59.567 38.462 0.00 0.00 0.00 5.73
8598 21595 7.451566 ACTGAACCATTAGAATATTTATGCCCC 59.548 37.037 0.00 0.00 0.00 5.80
8599 21596 8.409358 ACTGAACCATTAGAATATTTATGCCC 57.591 34.615 0.00 0.00 0.00 5.36
8608 21605 9.559732 CCATGATTGTACTGAACCATTAGAATA 57.440 33.333 0.00 0.00 0.00 1.75
8609 21606 7.013655 GCCATGATTGTACTGAACCATTAGAAT 59.986 37.037 0.00 0.00 0.00 2.40
8610 21607 6.318648 GCCATGATTGTACTGAACCATTAGAA 59.681 38.462 0.00 0.00 0.00 2.10
8613 21610 5.504853 TGCCATGATTGTACTGAACCATTA 58.495 37.500 0.00 0.00 0.00 1.90
8614 21611 4.343231 TGCCATGATTGTACTGAACCATT 58.657 39.130 0.00 0.00 0.00 3.16
8617 21614 4.782019 TTTGCCATGATTGTACTGAACC 57.218 40.909 0.00 0.00 0.00 3.62
8620 21617 9.448438 GGTATATATTTGCCATGATTGTACTGA 57.552 33.333 0.00 0.00 0.00 3.41
8632 21629 9.515226 GAGGATTGTAAAGGTATATATTTGCCA 57.485 33.333 3.33 0.00 0.00 4.92
8633 21630 9.515226 TGAGGATTGTAAAGGTATATATTTGCC 57.485 33.333 0.00 0.00 0.00 4.52
8638 21635 9.672673 GTGCATGAGGATTGTAAAGGTATATAT 57.327 33.333 0.00 0.00 0.00 0.86
8639 21636 8.655901 TGTGCATGAGGATTGTAAAGGTATATA 58.344 33.333 0.00 0.00 0.00 0.86
8640 21637 7.517320 TGTGCATGAGGATTGTAAAGGTATAT 58.483 34.615 0.00 0.00 0.00 0.86
8641 21638 6.894682 TGTGCATGAGGATTGTAAAGGTATA 58.105 36.000 0.00 0.00 0.00 1.47
8642 21639 5.754782 TGTGCATGAGGATTGTAAAGGTAT 58.245 37.500 0.00 0.00 0.00 2.73
8643 21640 5.172687 TGTGCATGAGGATTGTAAAGGTA 57.827 39.130 0.00 0.00 0.00 3.08
8645 21642 4.885907 AGATGTGCATGAGGATTGTAAAGG 59.114 41.667 0.00 0.00 0.00 3.11
8646 21643 6.263344 CAAGATGTGCATGAGGATTGTAAAG 58.737 40.000 0.00 0.00 0.00 1.85
8648 21645 5.823209 CAAGATGTGCATGAGGATTGTAA 57.177 39.130 0.00 0.00 0.00 2.41
8663 21660 4.525487 ACAAGACATGATTTGGCAAGATGT 59.475 37.500 16.75 16.75 34.87 3.06
8664 21661 5.068234 ACAAGACATGATTTGGCAAGATG 57.932 39.130 0.00 7.16 34.87 2.90
8667 21664 4.873817 TGAACAAGACATGATTTGGCAAG 58.126 39.130 0.00 0.00 34.87 4.01
8668 21665 4.933505 TGAACAAGACATGATTTGGCAA 57.066 36.364 0.00 0.00 34.87 4.52
8669 21666 6.587206 TTATGAACAAGACATGATTTGGCA 57.413 33.333 0.00 6.91 34.87 4.92
8670 21667 6.867816 TGTTTATGAACAAGACATGATTTGGC 59.132 34.615 0.00 1.61 42.54 4.52
8683 21680 9.840427 GCTTTCTAGCTAAATGTTTATGAACAA 57.160 29.630 7.18 0.00 44.93 2.83
8731 21728 8.268850 CTATCCATATAAAAATGGGACCGAAG 57.731 38.462 3.18 0.00 45.57 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.