Multiple sequence alignment - TraesCS5A01G041900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G041900 chr5A 100.000 2671 0 0 1 2671 37921777 37924447 0.000000e+00 4933.0
1 TraesCS5A01G041900 chr5B 87.184 1225 52 41 869 2033 49882679 49883858 0.000000e+00 1295.0
2 TraesCS5A01G041900 chr5B 86.346 520 70 1 6 525 527982932 527983450 1.390000e-157 566.0
3 TraesCS5A01G041900 chr5B 83.178 642 62 31 1053 1671 688589489 688588871 1.810000e-151 545.0
4 TraesCS5A01G041900 chr5B 84.897 437 31 15 2249 2671 49884044 49884459 2.480000e-110 409.0
5 TraesCS5A01G041900 chr5B 78.761 226 21 18 1456 1671 664243822 664244030 2.790000e-25 126.0
6 TraesCS5A01G041900 chr5B 81.633 98 10 6 2072 2162 49883914 49884010 1.030000e-09 75.0
7 TraesCS5A01G041900 chr5D 92.905 902 24 12 868 1741 47082429 47083318 0.000000e+00 1275.0
8 TraesCS5A01G041900 chr5D 87.904 959 41 22 811 1743 47286671 47285762 0.000000e+00 1059.0
9 TraesCS5A01G041900 chr5D 87.462 989 31 25 1733 2669 47084748 47085695 0.000000e+00 1053.0
10 TraesCS5A01G041900 chr5D 87.752 645 36 21 1877 2508 47285680 47285066 0.000000e+00 713.0
11 TraesCS5A01G041900 chr5D 85.630 508 20 12 999 1460 47517094 47516594 4.000000e-133 484.0
12 TraesCS5A01G041900 chr5D 87.352 253 14 8 523 773 47045247 47045483 9.420000e-70 274.0
13 TraesCS5A01G041900 chr5D 93.548 93 4 1 2072 2162 47516292 47516200 1.290000e-28 137.0
14 TraesCS5A01G041900 chr5D 98.039 51 1 0 1804 1854 47285731 47285681 3.660000e-14 89.8
15 TraesCS5A01G041900 chr5D 100.000 31 0 0 2430 2460 47285081 47285051 1.030000e-04 58.4
16 TraesCS5A01G041900 chr5D 96.970 33 1 0 633 665 138484588 138484620 3.710000e-04 56.5
17 TraesCS5A01G041900 chr5D 96.875 32 1 0 633 664 233795510 233795479 1.000000e-03 54.7
18 TraesCS5A01G041900 chr7D 92.000 525 41 1 1 525 117540207 117540730 0.000000e+00 736.0
19 TraesCS5A01G041900 chr7D 85.199 527 73 4 1 525 277727275 277726752 1.090000e-148 536.0
20 TraesCS5A01G041900 chr7D 82.636 645 62 33 1053 1671 484694369 484693749 2.360000e-145 525.0
21 TraesCS5A01G041900 chr6B 87.023 524 67 1 3 526 674149230 674149752 8.240000e-165 590.0
22 TraesCS5A01G041900 chr2B 77.053 475 96 11 9 478 571761243 571761709 7.330000e-66 261.0
23 TraesCS5A01G041900 chr1D 75.962 520 118 6 9 525 441090512 441091027 7.330000e-66 261.0
24 TraesCS5A01G041900 chr1A 100.000 33 0 0 675 707 361189742 361189710 7.980000e-06 62.1
25 TraesCS5A01G041900 chr4B 96.875 32 1 0 633 664 270823512 270823481 1.000000e-03 54.7
26 TraesCS5A01G041900 chr7B 100.000 28 0 0 633 660 120740830 120740803 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G041900 chr5A 37921777 37924447 2670 False 4933.00 4933 100.000000 1 2671 1 chr5A.!!$F1 2670
1 TraesCS5A01G041900 chr5B 49882679 49884459 1780 False 593.00 1295 84.571333 869 2671 3 chr5B.!!$F3 1802
2 TraesCS5A01G041900 chr5B 527982932 527983450 518 False 566.00 566 86.346000 6 525 1 chr5B.!!$F1 519
3 TraesCS5A01G041900 chr5B 688588871 688589489 618 True 545.00 545 83.178000 1053 1671 1 chr5B.!!$R1 618
4 TraesCS5A01G041900 chr5D 47082429 47085695 3266 False 1164.00 1275 90.183500 868 2669 2 chr5D.!!$F3 1801
5 TraesCS5A01G041900 chr5D 47285051 47286671 1620 True 480.05 1059 93.423750 811 2508 4 chr5D.!!$R2 1697
6 TraesCS5A01G041900 chr5D 47516200 47517094 894 True 310.50 484 89.589000 999 2162 2 chr5D.!!$R3 1163
7 TraesCS5A01G041900 chr7D 117540207 117540730 523 False 736.00 736 92.000000 1 525 1 chr7D.!!$F1 524
8 TraesCS5A01G041900 chr7D 277726752 277727275 523 True 536.00 536 85.199000 1 525 1 chr7D.!!$R1 524
9 TraesCS5A01G041900 chr7D 484693749 484694369 620 True 525.00 525 82.636000 1053 1671 1 chr7D.!!$R2 618
10 TraesCS5A01G041900 chr6B 674149230 674149752 522 False 590.00 590 87.023000 3 526 1 chr6B.!!$F1 523
11 TraesCS5A01G041900 chr1D 441090512 441091027 515 False 261.00 261 75.962000 9 525 1 chr1D.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 450 0.034477 ACGGGAATTGGATGACCCAC 60.034 55.0 0.0 0.0 46.62 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2233 3959 2.983907 TCGACCTCGATGAGTAGAGT 57.016 50.0 0.0 0.0 44.22 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 7.795482 AGCAATTAACATTAAGCATACGGTA 57.205 32.000 0.00 0.00 0.00 4.02
107 108 1.200020 GTCCATTTTCGCCTCACCTTG 59.800 52.381 0.00 0.00 0.00 3.61
157 158 1.173444 AGTGAAGCAGAGACGACCGT 61.173 55.000 0.00 0.00 0.00 4.83
203 204 1.946156 CGACGGAGACATGGCATCG 60.946 63.158 0.00 6.67 0.00 3.84
204 205 2.202932 ACGGAGACATGGCATCGC 60.203 61.111 12.51 0.00 0.00 4.58
259 260 2.998097 CCAGGGGAAGCGGATCAA 59.002 61.111 0.00 0.00 0.00 2.57
267 268 0.749454 GAAGCGGATCAACATGCCCT 60.749 55.000 0.00 0.00 0.00 5.19
292 293 1.077429 GGAAGTCACCCATGGAGGC 60.077 63.158 15.22 7.02 35.39 4.70
293 294 1.685224 GAAGTCACCCATGGAGGCA 59.315 57.895 15.22 0.00 35.39 4.75
297 298 1.097547 GTCACCCATGGAGGCAATCG 61.098 60.000 15.22 0.00 35.39 3.34
322 323 1.887320 GCAACAACAGATGATGCGAC 58.113 50.000 0.00 0.00 46.03 5.19
354 355 1.134310 AGCATGAGTCGCCATCATCAA 60.134 47.619 0.00 0.00 35.20 2.57
388 389 1.066430 GTGGTAGCATCCTCCGAACAA 60.066 52.381 0.00 0.00 0.00 2.83
390 391 1.207329 GGTAGCATCCTCCGAACAAGT 59.793 52.381 0.00 0.00 0.00 3.16
393 394 1.347707 AGCATCCTCCGAACAAGTGAA 59.652 47.619 0.00 0.00 0.00 3.18
411 412 2.208431 GAACGAGAATGAGAGCCATGG 58.792 52.381 7.63 7.63 35.24 3.66
412 413 0.179062 ACGAGAATGAGAGCCATGGC 60.179 55.000 30.12 30.12 42.33 4.40
413 414 0.883814 CGAGAATGAGAGCCATGGCC 60.884 60.000 33.14 23.29 43.17 5.36
414 415 0.883814 GAGAATGAGAGCCATGGCCG 60.884 60.000 33.14 0.00 43.17 6.13
415 416 1.153086 GAATGAGAGCCATGGCCGT 60.153 57.895 33.14 20.78 43.17 5.68
416 417 0.749454 GAATGAGAGCCATGGCCGTT 60.749 55.000 33.14 23.62 43.17 4.44
417 418 1.033746 AATGAGAGCCATGGCCGTTG 61.034 55.000 33.14 0.00 43.17 4.10
418 419 3.512516 GAGAGCCATGGCCGTTGC 61.513 66.667 33.14 13.12 43.17 4.17
424 425 3.853330 CATGGCCGTTGCGTCGAG 61.853 66.667 0.00 0.00 38.85 4.04
429 430 4.351938 CCGTTGCGTCGAGGGTGA 62.352 66.667 7.31 0.00 0.00 4.02
430 431 2.355363 CGTTGCGTCGAGGGTGAA 60.355 61.111 7.31 0.00 0.00 3.18
431 432 2.654912 CGTTGCGTCGAGGGTGAAC 61.655 63.158 7.31 0.00 0.00 3.18
432 433 2.355363 TTGCGTCGAGGGTGAACG 60.355 61.111 7.31 0.00 0.00 3.95
433 434 3.851845 TTGCGTCGAGGGTGAACGG 62.852 63.158 7.31 0.00 0.00 4.44
435 436 3.367743 CGTCGAGGGTGAACGGGA 61.368 66.667 0.00 0.00 0.00 5.14
436 437 2.922950 CGTCGAGGGTGAACGGGAA 61.923 63.158 0.00 0.00 0.00 3.97
437 438 1.595357 GTCGAGGGTGAACGGGAAT 59.405 57.895 0.00 0.00 0.00 3.01
438 439 0.036671 GTCGAGGGTGAACGGGAATT 60.037 55.000 0.00 0.00 0.00 2.17
439 440 0.036765 TCGAGGGTGAACGGGAATTG 60.037 55.000 0.00 0.00 0.00 2.32
440 441 1.024579 CGAGGGTGAACGGGAATTGG 61.025 60.000 0.00 0.00 0.00 3.16
441 442 0.326927 GAGGGTGAACGGGAATTGGA 59.673 55.000 0.00 0.00 0.00 3.53
442 443 0.999712 AGGGTGAACGGGAATTGGAT 59.000 50.000 0.00 0.00 0.00 3.41
443 444 1.102978 GGGTGAACGGGAATTGGATG 58.897 55.000 0.00 0.00 0.00 3.51
444 445 1.340600 GGGTGAACGGGAATTGGATGA 60.341 52.381 0.00 0.00 0.00 2.92
445 446 1.743394 GGTGAACGGGAATTGGATGAC 59.257 52.381 0.00 0.00 0.00 3.06
446 447 1.743394 GTGAACGGGAATTGGATGACC 59.257 52.381 0.00 0.00 0.00 4.02
447 448 1.340600 TGAACGGGAATTGGATGACCC 60.341 52.381 0.00 0.00 39.02 4.46
448 449 0.701731 AACGGGAATTGGATGACCCA 59.298 50.000 0.00 0.00 44.93 4.51
449 450 0.034477 ACGGGAATTGGATGACCCAC 60.034 55.000 0.00 0.00 46.62 4.61
450 451 1.095228 CGGGAATTGGATGACCCACG 61.095 60.000 0.00 0.00 46.62 4.94
451 452 1.384222 GGGAATTGGATGACCCACGC 61.384 60.000 0.00 0.00 46.62 5.34
452 453 0.679640 GGAATTGGATGACCCACGCA 60.680 55.000 0.00 0.00 46.62 5.24
453 454 1.392589 GAATTGGATGACCCACGCAT 58.607 50.000 0.00 0.00 46.62 4.73
454 455 2.571212 GAATTGGATGACCCACGCATA 58.429 47.619 0.00 0.00 46.62 3.14
455 456 1.967319 ATTGGATGACCCACGCATAC 58.033 50.000 0.00 0.00 46.62 2.39
456 457 0.615850 TTGGATGACCCACGCATACA 59.384 50.000 0.00 0.00 46.62 2.29
457 458 0.836606 TGGATGACCCACGCATACAT 59.163 50.000 0.00 0.00 40.82 2.29
458 459 1.229428 GGATGACCCACGCATACATG 58.771 55.000 0.00 0.00 34.14 3.21
459 460 2.740630 GGATGACCCACGCATACATGC 61.741 57.143 4.04 4.04 41.74 4.06
484 485 3.998672 GTGAGGTTGGCGGTCGGA 61.999 66.667 0.00 0.00 0.00 4.55
485 486 3.691342 TGAGGTTGGCGGTCGGAG 61.691 66.667 0.00 0.00 0.00 4.63
486 487 3.692406 GAGGTTGGCGGTCGGAGT 61.692 66.667 0.00 0.00 0.00 3.85
487 488 3.644399 GAGGTTGGCGGTCGGAGTC 62.644 68.421 0.00 0.00 0.00 3.36
489 490 4.047059 GTTGGCGGTCGGAGTCGA 62.047 66.667 5.08 0.00 43.86 4.20
504 505 3.238108 AGTCGATGGTGACTTGTGATC 57.762 47.619 0.00 0.00 46.85 2.92
505 506 1.920574 GTCGATGGTGACTTGTGATCG 59.079 52.381 0.00 0.00 37.78 3.69
506 507 1.135112 TCGATGGTGACTTGTGATCGG 60.135 52.381 0.00 0.00 37.20 4.18
507 508 1.135112 CGATGGTGACTTGTGATCGGA 60.135 52.381 0.00 0.00 33.82 4.55
508 509 2.544685 GATGGTGACTTGTGATCGGAG 58.455 52.381 0.00 0.00 0.00 4.63
509 510 0.037326 TGGTGACTTGTGATCGGAGC 60.037 55.000 0.00 0.00 0.00 4.70
510 511 0.247736 GGTGACTTGTGATCGGAGCT 59.752 55.000 0.00 0.00 0.00 4.09
511 512 1.476891 GGTGACTTGTGATCGGAGCTA 59.523 52.381 0.00 0.00 0.00 3.32
512 513 2.101582 GGTGACTTGTGATCGGAGCTAT 59.898 50.000 0.00 0.00 0.00 2.97
513 514 3.119291 GTGACTTGTGATCGGAGCTATG 58.881 50.000 0.00 0.00 0.00 2.23
514 515 3.023832 TGACTTGTGATCGGAGCTATGA 58.976 45.455 0.00 0.00 0.00 2.15
515 516 3.181486 TGACTTGTGATCGGAGCTATGAC 60.181 47.826 0.00 0.00 0.00 3.06
516 517 2.101582 ACTTGTGATCGGAGCTATGACC 59.898 50.000 0.00 0.00 0.00 4.02
517 518 1.775385 TGTGATCGGAGCTATGACCA 58.225 50.000 0.00 0.00 0.00 4.02
518 519 1.683385 TGTGATCGGAGCTATGACCAG 59.317 52.381 0.00 0.00 0.00 4.00
519 520 1.000283 GTGATCGGAGCTATGACCAGG 60.000 57.143 0.00 0.00 0.00 4.45
520 521 0.037790 GATCGGAGCTATGACCAGGC 60.038 60.000 0.00 0.00 0.00 4.85
521 522 1.476007 ATCGGAGCTATGACCAGGCC 61.476 60.000 0.00 0.00 0.00 5.19
522 523 2.434843 CGGAGCTATGACCAGGCCA 61.435 63.158 5.01 0.00 0.00 5.36
523 524 1.147153 GGAGCTATGACCAGGCCAC 59.853 63.158 5.01 0.00 0.00 5.01
524 525 1.626356 GGAGCTATGACCAGGCCACA 61.626 60.000 5.01 0.00 0.00 4.17
525 526 0.471617 GAGCTATGACCAGGCCACAT 59.528 55.000 5.01 7.72 0.00 3.21
526 527 0.921896 AGCTATGACCAGGCCACATT 59.078 50.000 5.01 0.00 0.00 2.71
527 528 1.027357 GCTATGACCAGGCCACATTG 58.973 55.000 5.01 7.34 0.00 2.82
528 529 1.683011 GCTATGACCAGGCCACATTGT 60.683 52.381 5.01 0.00 0.00 2.71
529 530 2.019249 CTATGACCAGGCCACATTGTG 58.981 52.381 5.01 9.92 0.00 3.33
530 531 0.112995 ATGACCAGGCCACATTGTGT 59.887 50.000 15.34 0.00 0.00 3.72
531 532 0.106268 TGACCAGGCCACATTGTGTT 60.106 50.000 15.34 0.00 0.00 3.32
532 533 1.039856 GACCAGGCCACATTGTGTTT 58.960 50.000 15.34 0.00 0.00 2.83
533 534 0.752054 ACCAGGCCACATTGTGTTTG 59.248 50.000 15.34 9.90 0.00 2.93
534 535 1.039068 CCAGGCCACATTGTGTTTGA 58.961 50.000 15.34 0.00 0.00 2.69
535 536 1.619827 CCAGGCCACATTGTGTTTGAT 59.380 47.619 15.34 0.00 0.00 2.57
536 537 2.824936 CCAGGCCACATTGTGTTTGATA 59.175 45.455 15.34 0.00 0.00 2.15
537 538 3.119388 CCAGGCCACATTGTGTTTGATAG 60.119 47.826 15.34 0.00 0.00 2.08
538 539 3.507233 CAGGCCACATTGTGTTTGATAGT 59.493 43.478 15.34 0.00 0.00 2.12
539 540 4.699735 CAGGCCACATTGTGTTTGATAGTA 59.300 41.667 15.34 0.00 0.00 1.82
540 541 5.357878 CAGGCCACATTGTGTTTGATAGTAT 59.642 40.000 15.34 0.00 0.00 2.12
541 542 5.357878 AGGCCACATTGTGTTTGATAGTATG 59.642 40.000 15.34 0.00 0.00 2.39
542 543 5.356751 GGCCACATTGTGTTTGATAGTATGA 59.643 40.000 15.34 0.00 0.00 2.15
543 544 6.039717 GGCCACATTGTGTTTGATAGTATGAT 59.960 38.462 15.34 0.00 0.00 2.45
544 545 6.914215 GCCACATTGTGTTTGATAGTATGATG 59.086 38.462 15.34 0.00 0.00 3.07
545 546 7.415541 GCCACATTGTGTTTGATAGTATGATGT 60.416 37.037 15.34 0.00 0.00 3.06
546 547 7.911727 CCACATTGTGTTTGATAGTATGATGTG 59.088 37.037 15.34 0.00 39.94 3.21
547 548 8.453320 CACATTGTGTTTGATAGTATGATGTGT 58.547 33.333 8.69 0.00 37.15 3.72
548 549 9.013229 ACATTGTGTTTGATAGTATGATGTGTT 57.987 29.630 0.00 0.00 0.00 3.32
551 552 8.487313 TGTGTTTGATAGTATGATGTGTTACC 57.513 34.615 0.00 0.00 0.00 2.85
552 553 8.318412 TGTGTTTGATAGTATGATGTGTTACCT 58.682 33.333 0.00 0.00 0.00 3.08
553 554 9.811995 GTGTTTGATAGTATGATGTGTTACCTA 57.188 33.333 0.00 0.00 0.00 3.08
585 586 9.250624 TCATTGTTTTTGGTTATTTTAACTCCG 57.749 29.630 0.00 0.00 0.00 4.63
586 587 9.036671 CATTGTTTTTGGTTATTTTAACTCCGT 57.963 29.630 0.00 0.00 0.00 4.69
587 588 7.988904 TGTTTTTGGTTATTTTAACTCCGTG 57.011 32.000 0.00 0.00 0.00 4.94
588 589 7.769220 TGTTTTTGGTTATTTTAACTCCGTGA 58.231 30.769 0.00 0.00 0.00 4.35
589 590 7.916450 TGTTTTTGGTTATTTTAACTCCGTGAG 59.084 33.333 0.03 0.03 35.52 3.51
590 591 7.571080 TTTTGGTTATTTTAACTCCGTGAGT 57.429 32.000 1.23 1.23 45.64 3.41
591 592 8.674263 TTTTGGTTATTTTAACTCCGTGAGTA 57.326 30.769 6.93 0.00 42.59 2.59
592 593 8.851541 TTTGGTTATTTTAACTCCGTGAGTAT 57.148 30.769 6.93 1.16 42.59 2.12
593 594 8.483307 TTGGTTATTTTAACTCCGTGAGTATC 57.517 34.615 6.93 0.00 42.59 2.24
594 595 7.844009 TGGTTATTTTAACTCCGTGAGTATCT 58.156 34.615 6.93 0.00 42.59 1.98
595 596 7.977853 TGGTTATTTTAACTCCGTGAGTATCTC 59.022 37.037 6.93 0.00 42.59 2.75
596 597 8.196103 GGTTATTTTAACTCCGTGAGTATCTCT 58.804 37.037 6.93 0.00 42.59 3.10
597 598 9.583765 GTTATTTTAACTCCGTGAGTATCTCTT 57.416 33.333 6.93 0.00 42.59 2.85
600 601 8.530269 TTTTAACTCCGTGAGTATCTCTTTTC 57.470 34.615 6.93 0.00 42.59 2.29
601 602 5.986501 AACTCCGTGAGTATCTCTTTTCT 57.013 39.130 6.93 0.00 42.59 2.52
602 603 8.571461 TTAACTCCGTGAGTATCTCTTTTCTA 57.429 34.615 6.93 0.00 42.59 2.10
603 604 6.687081 ACTCCGTGAGTATCTCTTTTCTAG 57.313 41.667 4.93 0.00 41.51 2.43
604 605 6.416415 ACTCCGTGAGTATCTCTTTTCTAGA 58.584 40.000 4.93 0.00 41.51 2.43
605 606 6.885376 ACTCCGTGAGTATCTCTTTTCTAGAA 59.115 38.462 0.00 0.00 41.51 2.10
606 607 7.066525 ACTCCGTGAGTATCTCTTTTCTAGAAG 59.933 40.741 5.12 0.00 41.51 2.85
607 608 5.974751 CCGTGAGTATCTCTTTTCTAGAAGC 59.025 44.000 5.12 0.00 34.92 3.86
608 609 5.974751 CGTGAGTATCTCTTTTCTAGAAGCC 59.025 44.000 5.12 0.00 34.92 4.35
609 610 6.277605 GTGAGTATCTCTTTTCTAGAAGCCC 58.722 44.000 5.12 0.00 34.92 5.19
610 611 5.067936 TGAGTATCTCTTTTCTAGAAGCCCG 59.932 44.000 5.12 0.00 34.92 6.13
611 612 4.957327 AGTATCTCTTTTCTAGAAGCCCGT 59.043 41.667 5.12 0.00 30.91 5.28
612 613 4.828072 ATCTCTTTTCTAGAAGCCCGTT 57.172 40.909 5.12 0.00 30.91 4.44
613 614 3.926616 TCTCTTTTCTAGAAGCCCGTTG 58.073 45.455 5.12 0.00 30.91 4.10
614 615 2.416893 CTCTTTTCTAGAAGCCCGTTGC 59.583 50.000 5.12 0.00 41.71 4.17
615 616 2.151202 CTTTTCTAGAAGCCCGTTGCA 58.849 47.619 5.12 0.00 44.83 4.08
616 617 2.264005 TTTCTAGAAGCCCGTTGCAA 57.736 45.000 5.12 0.00 44.83 4.08
617 618 2.489938 TTCTAGAAGCCCGTTGCAAT 57.510 45.000 0.59 0.00 44.83 3.56
618 619 1.737838 TCTAGAAGCCCGTTGCAATG 58.262 50.000 11.90 11.90 44.83 2.82
619 620 0.099436 CTAGAAGCCCGTTGCAATGC 59.901 55.000 13.42 11.33 44.83 3.56
620 621 0.607762 TAGAAGCCCGTTGCAATGCA 60.608 50.000 13.42 2.72 44.83 3.96
621 622 1.734117 GAAGCCCGTTGCAATGCAC 60.734 57.895 7.72 7.05 44.83 4.57
622 623 3.556543 AAGCCCGTTGCAATGCACG 62.557 57.895 7.72 14.71 44.83 5.34
623 624 4.036804 GCCCGTTGCAATGCACGA 62.037 61.111 23.91 3.84 38.71 4.35
624 625 2.176546 CCCGTTGCAATGCACGAG 59.823 61.111 23.91 12.58 38.71 4.18
625 626 2.502510 CCGTTGCAATGCACGAGC 60.503 61.111 23.91 0.00 38.71 5.03
626 627 2.557805 CGTTGCAATGCACGAGCT 59.442 55.556 19.78 0.00 38.71 4.09
627 628 1.634757 CCGTTGCAATGCACGAGCTA 61.635 55.000 23.91 1.73 38.71 3.32
628 629 0.519175 CGTTGCAATGCACGAGCTAC 60.519 55.000 19.78 9.34 38.71 3.58
629 630 0.798776 GTTGCAATGCACGAGCTACT 59.201 50.000 7.72 0.00 38.71 2.57
630 631 1.999735 GTTGCAATGCACGAGCTACTA 59.000 47.619 7.72 0.00 38.71 1.82
631 632 1.926561 TGCAATGCACGAGCTACTAG 58.073 50.000 2.72 0.00 42.74 2.57
632 633 1.204704 TGCAATGCACGAGCTACTAGT 59.795 47.619 2.72 0.00 42.74 2.57
633 634 1.855360 GCAATGCACGAGCTACTAGTC 59.145 52.381 6.36 0.00 42.74 2.59
634 635 2.735444 GCAATGCACGAGCTACTAGTCA 60.735 50.000 6.36 0.00 42.74 3.41
635 636 2.853731 ATGCACGAGCTACTAGTCAC 57.146 50.000 6.36 0.00 42.74 3.67
636 637 0.446616 TGCACGAGCTACTAGTCACG 59.553 55.000 6.36 4.08 42.74 4.35
637 638 0.248134 GCACGAGCTACTAGTCACGG 60.248 60.000 0.00 0.00 37.91 4.94
638 639 0.377554 CACGAGCTACTAGTCACGGG 59.622 60.000 0.00 0.00 0.00 5.28
639 640 1.355916 CGAGCTACTAGTCACGGGC 59.644 63.158 0.00 0.00 0.00 6.13
640 641 1.096386 CGAGCTACTAGTCACGGGCT 61.096 60.000 0.00 2.80 0.00 5.19
641 642 1.809271 CGAGCTACTAGTCACGGGCTA 60.809 57.143 0.00 0.00 0.00 3.93
642 643 2.295885 GAGCTACTAGTCACGGGCTAA 58.704 52.381 0.00 0.00 0.00 3.09
643 644 2.022934 AGCTACTAGTCACGGGCTAAC 58.977 52.381 0.00 0.00 0.00 2.34
644 645 1.268437 GCTACTAGTCACGGGCTAACG 60.268 57.143 0.00 0.00 40.31 3.18
646 647 2.113860 ACTAGTCACGGGCTAACGTA 57.886 50.000 0.00 0.00 46.75 3.57
647 648 1.740025 ACTAGTCACGGGCTAACGTAC 59.260 52.381 0.00 0.00 46.75 3.67
648 649 2.012673 CTAGTCACGGGCTAACGTACT 58.987 52.381 0.00 8.16 46.75 2.73
649 650 2.113860 AGTCACGGGCTAACGTACTA 57.886 50.000 0.00 0.00 46.75 1.82
650 651 2.012673 AGTCACGGGCTAACGTACTAG 58.987 52.381 0.00 0.00 46.75 2.57
651 652 2.009774 GTCACGGGCTAACGTACTAGA 58.990 52.381 0.00 0.00 46.75 2.43
652 653 2.420022 GTCACGGGCTAACGTACTAGAA 59.580 50.000 0.00 0.00 46.75 2.10
653 654 3.065925 GTCACGGGCTAACGTACTAGAAT 59.934 47.826 0.00 0.00 46.75 2.40
654 655 4.273480 GTCACGGGCTAACGTACTAGAATA 59.727 45.833 0.00 0.00 46.75 1.75
655 656 5.049129 GTCACGGGCTAACGTACTAGAATAT 60.049 44.000 0.00 0.00 46.75 1.28
656 657 5.532406 TCACGGGCTAACGTACTAGAATATT 59.468 40.000 0.00 0.00 46.75 1.28
657 658 6.039717 TCACGGGCTAACGTACTAGAATATTT 59.960 38.462 0.00 0.00 46.75 1.40
658 659 7.228507 TCACGGGCTAACGTACTAGAATATTTA 59.771 37.037 0.00 0.00 46.75 1.40
659 660 8.025445 CACGGGCTAACGTACTAGAATATTTAT 58.975 37.037 0.00 0.00 46.75 1.40
660 661 9.231297 ACGGGCTAACGTACTAGAATATTTATA 57.769 33.333 0.00 0.00 46.58 0.98
697 698 9.869757 AAAAGAATATTTATACCCTGTTGCAAC 57.130 29.630 22.83 22.83 0.00 4.17
698 699 8.588290 AAGAATATTTATACCCTGTTGCAACA 57.412 30.769 29.36 29.36 37.37 3.33
699 700 7.996385 AGAATATTTATACCCTGTTGCAACAC 58.004 34.615 27.96 12.83 34.70 3.32
700 701 7.613801 AGAATATTTATACCCTGTTGCAACACA 59.386 33.333 27.96 13.56 34.70 3.72
701 702 4.839668 TTTATACCCTGTTGCAACACAC 57.160 40.909 27.96 3.39 34.70 3.82
702 703 1.234821 ATACCCTGTTGCAACACACG 58.765 50.000 27.96 18.01 34.70 4.49
703 704 0.816018 TACCCTGTTGCAACACACGG 60.816 55.000 27.96 25.14 34.70 4.94
704 705 2.721231 CCTGTTGCAACACACGGG 59.279 61.111 27.96 22.41 34.70 5.28
705 706 2.026014 CTGTTGCAACACACGGGC 59.974 61.111 27.96 0.00 34.70 6.13
706 707 2.751837 TGTTGCAACACACGGGCA 60.752 55.556 27.96 2.87 33.17 5.36
707 708 2.074230 CTGTTGCAACACACGGGCAT 62.074 55.000 27.96 0.00 37.39 4.40
708 709 1.067250 GTTGCAACACACGGGCATT 59.933 52.632 24.52 0.00 37.39 3.56
709 710 1.067084 TTGCAACACACGGGCATTG 59.933 52.632 0.00 0.00 37.39 2.82
710 711 1.670949 TTGCAACACACGGGCATTGT 61.671 50.000 0.00 0.00 37.39 2.71
711 712 1.371635 GCAACACACGGGCATTGTC 60.372 57.895 3.68 0.00 0.00 3.18
712 713 1.082169 CAACACACGGGCATTGTCG 60.082 57.895 0.00 1.21 0.00 4.35
713 714 1.525077 AACACACGGGCATTGTCGT 60.525 52.632 0.00 2.30 40.49 4.34
717 718 4.980805 ACGGGCATTGTCGTGCGT 62.981 61.111 6.43 0.00 45.97 5.24
718 719 2.811747 CGGGCATTGTCGTGCGTA 60.812 61.111 0.00 0.00 45.97 4.42
719 720 2.171079 CGGGCATTGTCGTGCGTAT 61.171 57.895 0.00 0.00 45.97 3.06
720 721 1.701545 CGGGCATTGTCGTGCGTATT 61.702 55.000 0.00 0.00 45.97 1.89
721 722 0.248054 GGGCATTGTCGTGCGTATTG 60.248 55.000 0.00 0.00 45.97 1.90
722 723 0.446222 GGCATTGTCGTGCGTATTGT 59.554 50.000 0.00 0.00 45.97 2.71
723 724 1.529010 GGCATTGTCGTGCGTATTGTC 60.529 52.381 0.00 0.00 45.97 3.18
724 725 1.529010 GCATTGTCGTGCGTATTGTCC 60.529 52.381 0.00 0.00 35.10 4.02
725 726 1.999735 CATTGTCGTGCGTATTGTCCT 59.000 47.619 0.00 0.00 0.00 3.85
726 727 3.183754 CATTGTCGTGCGTATTGTCCTA 58.816 45.455 0.00 0.00 0.00 2.94
727 728 2.554806 TGTCGTGCGTATTGTCCTAG 57.445 50.000 0.00 0.00 0.00 3.02
728 729 1.814394 TGTCGTGCGTATTGTCCTAGT 59.186 47.619 0.00 0.00 0.00 2.57
729 730 3.009026 TGTCGTGCGTATTGTCCTAGTA 58.991 45.455 0.00 0.00 0.00 1.82
730 731 3.628942 TGTCGTGCGTATTGTCCTAGTAT 59.371 43.478 0.00 0.00 0.00 2.12
731 732 4.815846 TGTCGTGCGTATTGTCCTAGTATA 59.184 41.667 0.00 0.00 0.00 1.47
732 733 5.142962 GTCGTGCGTATTGTCCTAGTATAC 58.857 45.833 0.00 0.00 0.00 1.47
733 734 5.049818 GTCGTGCGTATTGTCCTAGTATACT 60.050 44.000 10.87 10.87 0.00 2.12
734 735 5.528690 TCGTGCGTATTGTCCTAGTATACTT 59.471 40.000 11.40 0.00 0.00 2.24
735 736 5.624081 CGTGCGTATTGTCCTAGTATACTTG 59.376 44.000 11.40 9.10 0.00 3.16
736 737 6.501781 GTGCGTATTGTCCTAGTATACTTGT 58.498 40.000 11.40 0.00 0.00 3.16
737 738 7.518848 CGTGCGTATTGTCCTAGTATACTTGTA 60.519 40.741 11.40 0.00 0.00 2.41
738 739 7.802251 GTGCGTATTGTCCTAGTATACTTGTAG 59.198 40.741 11.40 2.33 0.00 2.74
739 740 7.716560 TGCGTATTGTCCTAGTATACTTGTAGA 59.283 37.037 11.40 0.14 0.00 2.59
740 741 8.562892 GCGTATTGTCCTAGTATACTTGTAGAA 58.437 37.037 11.40 1.27 0.00 2.10
744 745 6.967135 TGTCCTAGTATACTTGTAGAATGCG 58.033 40.000 11.40 0.00 0.00 4.73
745 746 6.769341 TGTCCTAGTATACTTGTAGAATGCGA 59.231 38.462 11.40 0.00 0.00 5.10
746 747 7.076983 GTCCTAGTATACTTGTAGAATGCGAC 58.923 42.308 11.40 5.68 0.00 5.19
747 748 6.206243 TCCTAGTATACTTGTAGAATGCGACC 59.794 42.308 11.40 0.00 0.00 4.79
748 749 5.847111 AGTATACTTGTAGAATGCGACCA 57.153 39.130 0.00 0.00 0.00 4.02
749 750 6.406692 AGTATACTTGTAGAATGCGACCAT 57.593 37.500 0.00 0.00 0.00 3.55
750 751 6.216569 AGTATACTTGTAGAATGCGACCATG 58.783 40.000 0.00 0.00 0.00 3.66
751 752 3.334583 ACTTGTAGAATGCGACCATGT 57.665 42.857 0.00 0.00 0.00 3.21
752 753 3.674997 ACTTGTAGAATGCGACCATGTT 58.325 40.909 0.00 0.00 0.00 2.71
753 754 4.827692 ACTTGTAGAATGCGACCATGTTA 58.172 39.130 0.00 0.00 0.00 2.41
754 755 4.870426 ACTTGTAGAATGCGACCATGTTAG 59.130 41.667 0.00 0.00 0.00 2.34
755 756 4.465632 TGTAGAATGCGACCATGTTAGT 57.534 40.909 0.00 0.00 0.00 2.24
756 757 4.180817 TGTAGAATGCGACCATGTTAGTG 58.819 43.478 0.00 0.00 0.00 2.74
757 758 3.610040 AGAATGCGACCATGTTAGTGA 57.390 42.857 0.00 0.00 0.00 3.41
758 759 3.525537 AGAATGCGACCATGTTAGTGAG 58.474 45.455 0.00 0.00 0.00 3.51
759 760 3.055819 AGAATGCGACCATGTTAGTGAGT 60.056 43.478 0.00 0.00 0.00 3.41
760 761 2.078849 TGCGACCATGTTAGTGAGTG 57.921 50.000 0.00 0.00 0.00 3.51
761 762 1.616374 TGCGACCATGTTAGTGAGTGA 59.384 47.619 0.00 0.00 0.00 3.41
762 763 2.036604 TGCGACCATGTTAGTGAGTGAA 59.963 45.455 0.00 0.00 0.00 3.18
763 764 3.064207 GCGACCATGTTAGTGAGTGAAA 58.936 45.455 0.00 0.00 0.00 2.69
764 765 3.120649 GCGACCATGTTAGTGAGTGAAAC 60.121 47.826 0.00 0.00 0.00 2.78
765 766 3.432252 CGACCATGTTAGTGAGTGAAACC 59.568 47.826 0.00 0.00 37.80 3.27
766 767 3.399330 ACCATGTTAGTGAGTGAAACCG 58.601 45.455 0.00 0.00 37.80 4.44
767 768 2.742053 CCATGTTAGTGAGTGAAACCGG 59.258 50.000 0.00 0.00 37.80 5.28
768 769 3.399330 CATGTTAGTGAGTGAAACCGGT 58.601 45.455 0.00 0.00 37.80 5.28
769 770 3.102052 TGTTAGTGAGTGAAACCGGTC 57.898 47.619 8.04 0.00 37.80 4.79
770 771 2.056577 GTTAGTGAGTGAAACCGGTCG 58.943 52.381 8.04 0.00 37.80 4.79
771 772 1.608055 TAGTGAGTGAAACCGGTCGA 58.392 50.000 8.04 0.00 37.80 4.20
772 773 0.966920 AGTGAGTGAAACCGGTCGAT 59.033 50.000 8.04 0.00 37.80 3.59
773 774 1.067776 AGTGAGTGAAACCGGTCGATC 60.068 52.381 8.04 7.87 37.80 3.69
774 775 0.963225 TGAGTGAAACCGGTCGATCA 59.037 50.000 8.04 10.76 37.80 2.92
775 776 1.341852 TGAGTGAAACCGGTCGATCAA 59.658 47.619 8.04 0.00 37.80 2.57
776 777 1.725164 GAGTGAAACCGGTCGATCAAC 59.275 52.381 8.04 7.49 37.80 3.18
777 778 1.343465 AGTGAAACCGGTCGATCAACT 59.657 47.619 8.04 10.20 37.80 3.16
778 779 2.559668 AGTGAAACCGGTCGATCAACTA 59.440 45.455 8.04 0.00 37.80 2.24
779 780 2.665052 GTGAAACCGGTCGATCAACTAC 59.335 50.000 8.04 0.00 0.00 2.73
780 781 2.559668 TGAAACCGGTCGATCAACTACT 59.440 45.455 8.04 0.00 0.00 2.57
781 782 2.935481 AACCGGTCGATCAACTACTC 57.065 50.000 8.04 0.00 0.00 2.59
782 783 1.101331 ACCGGTCGATCAACTACTCC 58.899 55.000 0.00 0.00 0.00 3.85
783 784 1.340795 ACCGGTCGATCAACTACTCCT 60.341 52.381 0.00 0.00 0.00 3.69
784 785 1.334243 CCGGTCGATCAACTACTCCTC 59.666 57.143 0.00 0.00 0.00 3.71
785 786 1.334243 CGGTCGATCAACTACTCCTCC 59.666 57.143 0.00 0.00 0.00 4.30
786 787 2.376109 GGTCGATCAACTACTCCTCCA 58.624 52.381 0.00 0.00 0.00 3.86
787 788 2.359531 GGTCGATCAACTACTCCTCCAG 59.640 54.545 0.00 0.00 0.00 3.86
788 789 3.018149 GTCGATCAACTACTCCTCCAGT 58.982 50.000 0.00 0.00 39.41 4.00
789 790 4.197750 GTCGATCAACTACTCCTCCAGTA 58.802 47.826 0.00 0.00 36.43 2.74
873 874 7.773489 TTGGAATGGAGTGTTGAATTATTGA 57.227 32.000 0.00 0.00 0.00 2.57
899 900 6.670695 AGGGCTAGAAATGTCAATTTGTTT 57.329 33.333 0.00 0.00 36.10 2.83
907 908 6.980397 AGAAATGTCAATTTGTTTGAGTGTCC 59.020 34.615 0.00 0.00 44.89 4.02
995 996 1.082496 GAAGCAGAGCGCAACACAC 60.082 57.895 11.47 0.00 46.13 3.82
1098 1110 5.296283 CAGAACATCTCCAATCCAGAATCAC 59.704 44.000 0.00 0.00 0.00 3.06
1115 1127 5.802451 AGAATCACGCGAGCATATGTATAAG 59.198 40.000 15.93 0.00 0.00 1.73
1116 1128 4.499037 TCACGCGAGCATATGTATAAGT 57.501 40.909 15.93 0.00 0.00 2.24
1117 1129 5.616488 TCACGCGAGCATATGTATAAGTA 57.384 39.130 15.93 0.00 0.00 2.24
1118 1130 6.004408 TCACGCGAGCATATGTATAAGTAA 57.996 37.500 15.93 0.00 0.00 2.24
1165 1190 3.445008 TCAGTCCCTAACTCATTCTGCT 58.555 45.455 0.00 0.00 35.45 4.24
1235 1267 1.442148 GGACCTGGAGATACGGCAC 59.558 63.158 0.00 0.00 0.00 5.01
1785 3422 2.314647 TGCGTGCGTGGTTTAGCTC 61.315 57.895 0.00 0.00 0.00 4.09
1832 3478 6.671779 AGTCCCAAATCTACTCTTCTCTTCAT 59.328 38.462 0.00 0.00 0.00 2.57
1854 3500 3.455910 TGGATGTGTAATCCTCTCAAGGG 59.544 47.826 5.98 0.00 43.56 3.95
2363 4100 7.041372 GCAGTGGAAGTTACATAAAAGACAAGA 60.041 37.037 0.00 0.00 0.00 3.02
2418 4155 2.414481 CAGCAGAGTTGTTTCCGATGAG 59.586 50.000 0.00 0.00 0.00 2.90
2503 4259 1.830279 ACAGATGAGCACCACCAATG 58.170 50.000 0.00 0.00 0.00 2.82
2578 4334 9.206870 AGCATGTATGTAAACCAAAAGAATTTG 57.793 29.630 0.00 0.00 44.50 2.32
2606 4365 3.211045 TGGTTGCTTCTGTACAAGTTCC 58.789 45.455 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 1.533625 CAAGGTGAGGCGAAAATGGA 58.466 50.000 0.00 0.00 0.00 3.41
91 92 1.250840 GCCCAAGGTGAGGCGAAAAT 61.251 55.000 0.00 0.00 39.87 1.82
107 108 3.827898 CCGTCTCTCGACCTGCCC 61.828 72.222 0.00 0.00 42.86 5.36
157 158 1.078637 ATGTCTCCCTCGTCGTCGA 60.079 57.895 4.42 4.42 44.12 4.20
259 260 3.866379 TTCCGCAAGCAGGGCATGT 62.866 57.895 0.00 0.00 29.47 3.21
267 268 2.281484 GGGTGACTTCCGCAAGCA 60.281 61.111 0.00 0.00 32.09 3.91
292 293 1.729131 GTTGTTGCCACGCCGATTG 60.729 57.895 0.00 0.00 0.00 2.67
293 294 2.128853 CTGTTGTTGCCACGCCGATT 62.129 55.000 0.00 0.00 0.00 3.34
297 298 1.081242 CATCTGTTGTTGCCACGCC 60.081 57.895 0.00 0.00 0.00 5.68
309 310 0.246360 TTCACCGTCGCATCATCTGT 59.754 50.000 0.00 0.00 0.00 3.41
313 314 0.179100 CTCCTTCACCGTCGCATCAT 60.179 55.000 0.00 0.00 0.00 2.45
322 323 1.066573 ACTCATGCTTCTCCTTCACCG 60.067 52.381 0.00 0.00 0.00 4.94
354 355 1.003580 CTACCACCACTTCAGCACCAT 59.996 52.381 0.00 0.00 0.00 3.55
360 361 1.556911 AGGATGCTACCACCACTTCAG 59.443 52.381 0.00 0.00 0.00 3.02
388 389 1.895798 TGGCTCTCATTCTCGTTCACT 59.104 47.619 0.00 0.00 0.00 3.41
390 391 2.419159 CCATGGCTCTCATTCTCGTTCA 60.419 50.000 0.00 0.00 32.92 3.18
393 394 0.179062 GCCATGGCTCTCATTCTCGT 60.179 55.000 29.98 0.00 38.26 4.18
412 413 3.851845 TTCACCCTCGACGCAACGG 62.852 63.158 0.00 0.00 0.00 4.44
413 414 2.355363 TTCACCCTCGACGCAACG 60.355 61.111 0.00 0.00 0.00 4.10
414 415 2.654912 CGTTCACCCTCGACGCAAC 61.655 63.158 0.00 0.00 0.00 4.17
415 416 2.355363 CGTTCACCCTCGACGCAA 60.355 61.111 0.00 0.00 0.00 4.85
416 417 4.351938 CCGTTCACCCTCGACGCA 62.352 66.667 0.00 0.00 35.60 5.24
418 419 2.221906 ATTCCCGTTCACCCTCGACG 62.222 60.000 0.00 0.00 36.61 5.12
419 420 0.036671 AATTCCCGTTCACCCTCGAC 60.037 55.000 0.00 0.00 0.00 4.20
420 421 0.036765 CAATTCCCGTTCACCCTCGA 60.037 55.000 0.00 0.00 0.00 4.04
421 422 1.024579 CCAATTCCCGTTCACCCTCG 61.025 60.000 0.00 0.00 0.00 4.63
422 423 0.326927 TCCAATTCCCGTTCACCCTC 59.673 55.000 0.00 0.00 0.00 4.30
423 424 0.999712 ATCCAATTCCCGTTCACCCT 59.000 50.000 0.00 0.00 0.00 4.34
424 425 1.102978 CATCCAATTCCCGTTCACCC 58.897 55.000 0.00 0.00 0.00 4.61
425 426 1.743394 GTCATCCAATTCCCGTTCACC 59.257 52.381 0.00 0.00 0.00 4.02
426 427 1.743394 GGTCATCCAATTCCCGTTCAC 59.257 52.381 0.00 0.00 0.00 3.18
427 428 1.340600 GGGTCATCCAATTCCCGTTCA 60.341 52.381 0.00 0.00 35.00 3.18
428 429 1.340600 TGGGTCATCCAATTCCCGTTC 60.341 52.381 0.00 0.00 43.84 3.95
429 430 0.701731 TGGGTCATCCAATTCCCGTT 59.298 50.000 0.00 0.00 43.84 4.44
430 431 2.393416 TGGGTCATCCAATTCCCGT 58.607 52.632 0.00 0.00 43.84 5.28
438 439 0.836606 ATGTATGCGTGGGTCATCCA 59.163 50.000 0.00 0.00 44.79 3.41
439 440 1.229428 CATGTATGCGTGGGTCATCC 58.771 55.000 0.00 0.00 0.00 3.51
440 441 0.588252 GCATGTATGCGTGGGTCATC 59.412 55.000 5.11 0.00 44.67 2.92
441 442 2.706636 GCATGTATGCGTGGGTCAT 58.293 52.632 5.11 0.00 44.67 3.06
442 443 4.217035 GCATGTATGCGTGGGTCA 57.783 55.556 5.11 0.00 44.67 4.02
460 461 3.134127 GCCAACCTCACGGATGCC 61.134 66.667 0.00 0.00 32.10 4.40
461 462 3.499737 CGCCAACCTCACGGATGC 61.500 66.667 0.00 0.00 32.10 3.91
467 468 3.934391 CTCCGACCGCCAACCTCAC 62.934 68.421 0.00 0.00 0.00 3.51
468 469 3.691342 CTCCGACCGCCAACCTCA 61.691 66.667 0.00 0.00 0.00 3.86
469 470 3.644399 GACTCCGACCGCCAACCTC 62.644 68.421 0.00 0.00 0.00 3.85
470 471 3.692406 GACTCCGACCGCCAACCT 61.692 66.667 0.00 0.00 0.00 3.50
472 473 4.047059 TCGACTCCGACCGCCAAC 62.047 66.667 0.00 0.00 40.30 3.77
480 481 0.526211 CAAGTCACCATCGACTCCGA 59.474 55.000 0.00 0.00 45.56 4.55
481 482 0.243907 ACAAGTCACCATCGACTCCG 59.756 55.000 0.00 0.00 45.56 4.63
482 483 1.272490 TCACAAGTCACCATCGACTCC 59.728 52.381 0.00 0.00 45.56 3.85
483 484 2.724977 TCACAAGTCACCATCGACTC 57.275 50.000 0.00 0.00 45.56 3.36
485 486 1.920574 CGATCACAAGTCACCATCGAC 59.079 52.381 0.00 0.00 38.92 4.20
486 487 1.135112 CCGATCACAAGTCACCATCGA 60.135 52.381 1.31 0.00 38.92 3.59
487 488 1.135112 TCCGATCACAAGTCACCATCG 60.135 52.381 0.00 0.00 36.85 3.84
488 489 2.544685 CTCCGATCACAAGTCACCATC 58.455 52.381 0.00 0.00 0.00 3.51
489 490 1.406069 GCTCCGATCACAAGTCACCAT 60.406 52.381 0.00 0.00 0.00 3.55
490 491 0.037326 GCTCCGATCACAAGTCACCA 60.037 55.000 0.00 0.00 0.00 4.17
491 492 0.247736 AGCTCCGATCACAAGTCACC 59.752 55.000 0.00 0.00 0.00 4.02
492 493 2.941453 TAGCTCCGATCACAAGTCAC 57.059 50.000 0.00 0.00 0.00 3.67
493 494 3.023832 TCATAGCTCCGATCACAAGTCA 58.976 45.455 0.00 0.00 0.00 3.41
494 495 3.376540 GTCATAGCTCCGATCACAAGTC 58.623 50.000 0.00 0.00 0.00 3.01
495 496 2.101582 GGTCATAGCTCCGATCACAAGT 59.898 50.000 0.00 0.00 0.00 3.16
496 497 2.101415 TGGTCATAGCTCCGATCACAAG 59.899 50.000 0.00 0.00 0.00 3.16
497 498 2.101415 CTGGTCATAGCTCCGATCACAA 59.899 50.000 0.00 0.00 0.00 3.33
498 499 1.683385 CTGGTCATAGCTCCGATCACA 59.317 52.381 0.00 0.00 0.00 3.58
499 500 1.000283 CCTGGTCATAGCTCCGATCAC 60.000 57.143 0.00 0.00 0.00 3.06
500 501 1.332195 CCTGGTCATAGCTCCGATCA 58.668 55.000 0.00 0.00 0.00 2.92
501 502 0.037790 GCCTGGTCATAGCTCCGATC 60.038 60.000 0.00 0.00 0.00 3.69
502 503 1.476007 GGCCTGGTCATAGCTCCGAT 61.476 60.000 0.00 0.00 0.00 4.18
503 504 2.134287 GGCCTGGTCATAGCTCCGA 61.134 63.158 0.00 0.00 0.00 4.55
504 505 2.423446 GGCCTGGTCATAGCTCCG 59.577 66.667 0.00 0.00 0.00 4.63
505 506 1.147153 GTGGCCTGGTCATAGCTCC 59.853 63.158 3.40 0.00 0.00 4.70
506 507 0.471617 ATGTGGCCTGGTCATAGCTC 59.528 55.000 3.40 0.00 0.00 4.09
507 508 0.921896 AATGTGGCCTGGTCATAGCT 59.078 50.000 3.40 0.00 0.00 3.32
508 509 1.027357 CAATGTGGCCTGGTCATAGC 58.973 55.000 3.40 0.00 0.00 2.97
509 510 2.019249 CACAATGTGGCCTGGTCATAG 58.981 52.381 3.40 0.00 0.00 2.23
510 511 1.354031 ACACAATGTGGCCTGGTCATA 59.646 47.619 18.37 0.90 37.94 2.15
511 512 0.112995 ACACAATGTGGCCTGGTCAT 59.887 50.000 18.37 0.00 37.94 3.06
512 513 0.106268 AACACAATGTGGCCTGGTCA 60.106 50.000 18.37 0.00 37.94 4.02
513 514 1.039856 AAACACAATGTGGCCTGGTC 58.960 50.000 18.37 0.00 37.94 4.02
514 515 0.752054 CAAACACAATGTGGCCTGGT 59.248 50.000 18.37 0.00 37.94 4.00
515 516 1.039068 TCAAACACAATGTGGCCTGG 58.961 50.000 18.37 2.73 37.94 4.45
516 517 3.507233 ACTATCAAACACAATGTGGCCTG 59.493 43.478 18.37 11.13 37.94 4.85
517 518 3.766545 ACTATCAAACACAATGTGGCCT 58.233 40.909 18.37 0.00 37.94 5.19
518 519 5.356751 TCATACTATCAAACACAATGTGGCC 59.643 40.000 18.37 0.00 37.94 5.36
519 520 6.435430 TCATACTATCAAACACAATGTGGC 57.565 37.500 18.37 0.00 37.94 5.01
520 521 7.911727 CACATCATACTATCAAACACAATGTGG 59.088 37.037 18.37 0.00 37.61 4.17
521 522 8.453320 ACACATCATACTATCAAACACAATGTG 58.547 33.333 12.40 12.40 43.50 3.21
522 523 8.565896 ACACATCATACTATCAAACACAATGT 57.434 30.769 0.00 0.00 0.00 2.71
525 526 8.941977 GGTAACACATCATACTATCAAACACAA 58.058 33.333 0.00 0.00 0.00 3.33
526 527 8.318412 AGGTAACACATCATACTATCAAACACA 58.682 33.333 0.00 0.00 41.41 3.72
527 528 8.718102 AGGTAACACATCATACTATCAAACAC 57.282 34.615 0.00 0.00 41.41 3.32
559 560 9.250624 CGGAGTTAAAATAACCAAAAACAATGA 57.749 29.630 0.00 0.00 0.00 2.57
560 561 9.036671 ACGGAGTTAAAATAACCAAAAACAATG 57.963 29.630 0.00 0.00 37.78 2.82
561 562 9.036671 CACGGAGTTAAAATAACCAAAAACAAT 57.963 29.630 0.00 0.00 41.61 2.71
562 563 8.248945 TCACGGAGTTAAAATAACCAAAAACAA 58.751 29.630 0.00 0.00 41.61 2.83
563 564 7.769220 TCACGGAGTTAAAATAACCAAAAACA 58.231 30.769 0.00 0.00 41.61 2.83
564 565 7.916977 ACTCACGGAGTTAAAATAACCAAAAAC 59.083 33.333 1.23 0.00 40.28 2.43
565 566 7.998580 ACTCACGGAGTTAAAATAACCAAAAA 58.001 30.769 1.23 0.00 40.28 1.94
566 567 7.571080 ACTCACGGAGTTAAAATAACCAAAA 57.429 32.000 1.23 0.00 40.28 2.44
567 568 8.851541 ATACTCACGGAGTTAAAATAACCAAA 57.148 30.769 11.09 0.00 40.28 3.28
568 569 8.316214 AGATACTCACGGAGTTAAAATAACCAA 58.684 33.333 11.09 0.00 40.28 3.67
569 570 7.844009 AGATACTCACGGAGTTAAAATAACCA 58.156 34.615 11.09 0.00 40.28 3.67
570 571 8.196103 AGAGATACTCACGGAGTTAAAATAACC 58.804 37.037 11.09 0.00 40.28 2.85
571 572 9.583765 AAGAGATACTCACGGAGTTAAAATAAC 57.416 33.333 11.09 0.00 40.28 1.89
574 575 9.152595 GAAAAGAGATACTCACGGAGTTAAAAT 57.847 33.333 11.09 0.61 40.28 1.82
575 576 8.365647 AGAAAAGAGATACTCACGGAGTTAAAA 58.634 33.333 11.09 0.00 40.28 1.52
576 577 7.893658 AGAAAAGAGATACTCACGGAGTTAAA 58.106 34.615 11.09 0.00 40.28 1.52
577 578 7.463961 AGAAAAGAGATACTCACGGAGTTAA 57.536 36.000 11.09 0.00 40.28 2.01
578 579 8.045507 TCTAGAAAAGAGATACTCACGGAGTTA 58.954 37.037 11.09 0.64 40.28 2.24
579 580 5.986501 AGAAAAGAGATACTCACGGAGTT 57.013 39.130 11.09 1.61 40.28 3.01
580 581 6.885376 TTCTAGAAAAGAGATACTCACGGAGT 59.115 38.462 1.68 10.71 39.90 3.85
581 582 6.928979 TCTAGAAAAGAGATACTCACGGAG 57.071 41.667 0.00 0.03 35.52 4.63
582 583 6.183360 GCTTCTAGAAAAGAGATACTCACGGA 60.183 42.308 6.63 0.00 35.05 4.69
583 584 5.974751 GCTTCTAGAAAAGAGATACTCACGG 59.025 44.000 6.63 0.00 35.05 4.94
584 585 5.974751 GGCTTCTAGAAAAGAGATACTCACG 59.025 44.000 6.63 0.00 35.05 4.35
585 586 6.277605 GGGCTTCTAGAAAAGAGATACTCAC 58.722 44.000 6.63 0.00 35.05 3.51
586 587 5.067936 CGGGCTTCTAGAAAAGAGATACTCA 59.932 44.000 6.63 0.00 35.05 3.41
587 588 5.068067 ACGGGCTTCTAGAAAAGAGATACTC 59.932 44.000 6.63 0.00 35.05 2.59
588 589 4.957327 ACGGGCTTCTAGAAAAGAGATACT 59.043 41.667 6.63 0.00 35.05 2.12
589 590 5.265350 ACGGGCTTCTAGAAAAGAGATAC 57.735 43.478 6.63 0.00 35.05 2.24
590 591 5.661458 CAACGGGCTTCTAGAAAAGAGATA 58.339 41.667 6.63 0.00 35.05 1.98
591 592 4.508662 CAACGGGCTTCTAGAAAAGAGAT 58.491 43.478 6.63 0.00 35.05 2.75
592 593 3.864921 GCAACGGGCTTCTAGAAAAGAGA 60.865 47.826 6.63 0.00 40.25 3.10
593 594 2.416893 GCAACGGGCTTCTAGAAAAGAG 59.583 50.000 6.63 1.84 40.25 2.85
594 595 2.224426 TGCAACGGGCTTCTAGAAAAGA 60.224 45.455 6.63 0.00 45.15 2.52
595 596 2.151202 TGCAACGGGCTTCTAGAAAAG 58.849 47.619 6.63 0.00 45.15 2.27
596 597 2.264005 TGCAACGGGCTTCTAGAAAA 57.736 45.000 6.63 0.00 45.15 2.29
597 598 2.264005 TTGCAACGGGCTTCTAGAAA 57.736 45.000 6.63 0.00 45.15 2.52
598 599 2.083774 CATTGCAACGGGCTTCTAGAA 58.916 47.619 0.00 4.81 45.15 2.10
599 600 1.737838 CATTGCAACGGGCTTCTAGA 58.262 50.000 0.00 0.00 45.15 2.43
600 601 0.099436 GCATTGCAACGGGCTTCTAG 59.901 55.000 0.00 0.00 45.15 2.43
601 602 0.607762 TGCATTGCAACGGGCTTCTA 60.608 50.000 9.33 0.00 45.15 2.10
602 603 1.902918 TGCATTGCAACGGGCTTCT 60.903 52.632 9.33 0.00 45.15 2.85
603 604 1.734117 GTGCATTGCAACGGGCTTC 60.734 57.895 13.94 9.18 41.47 3.86
604 605 2.339712 GTGCATTGCAACGGGCTT 59.660 55.556 13.94 0.00 41.47 4.35
605 606 4.041917 CGTGCATTGCAACGGGCT 62.042 61.111 13.94 0.00 41.47 5.19
606 607 3.951655 CTCGTGCATTGCAACGGGC 62.952 63.158 23.51 6.98 41.47 6.13
607 608 2.176546 CTCGTGCATTGCAACGGG 59.823 61.111 23.51 19.77 41.47 5.28
608 609 1.634757 TAGCTCGTGCATTGCAACGG 61.635 55.000 23.51 17.77 41.47 4.44
609 610 0.519175 GTAGCTCGTGCATTGCAACG 60.519 55.000 13.94 17.98 41.47 4.10
610 611 0.798776 AGTAGCTCGTGCATTGCAAC 59.201 50.000 13.94 6.84 41.47 4.17
611 612 2.270923 CTAGTAGCTCGTGCATTGCAA 58.729 47.619 13.94 0.00 41.47 4.08
612 613 1.204704 ACTAGTAGCTCGTGCATTGCA 59.795 47.619 7.38 7.38 42.74 4.08
613 614 1.855360 GACTAGTAGCTCGTGCATTGC 59.145 52.381 12.58 0.46 42.74 3.56
614 615 2.854777 GTGACTAGTAGCTCGTGCATTG 59.145 50.000 12.58 1.32 42.74 2.82
615 616 2.478031 CGTGACTAGTAGCTCGTGCATT 60.478 50.000 12.58 0.00 42.74 3.56
616 617 1.064208 CGTGACTAGTAGCTCGTGCAT 59.936 52.381 12.58 0.00 42.74 3.96
617 618 0.446616 CGTGACTAGTAGCTCGTGCA 59.553 55.000 12.58 0.00 42.74 4.57
618 619 0.248134 CCGTGACTAGTAGCTCGTGC 60.248 60.000 0.07 0.07 40.05 5.34
619 620 0.377554 CCCGTGACTAGTAGCTCGTG 59.622 60.000 0.00 0.00 0.00 4.35
620 621 1.375098 GCCCGTGACTAGTAGCTCGT 61.375 60.000 0.00 0.00 0.00 4.18
621 622 1.096386 AGCCCGTGACTAGTAGCTCG 61.096 60.000 0.00 0.00 0.00 5.03
622 623 1.964552 TAGCCCGTGACTAGTAGCTC 58.035 55.000 0.00 0.00 0.00 4.09
623 624 2.022934 GTTAGCCCGTGACTAGTAGCT 58.977 52.381 0.00 2.30 0.00 3.32
624 625 1.268437 CGTTAGCCCGTGACTAGTAGC 60.268 57.143 0.00 0.00 0.00 3.58
625 626 2.012673 ACGTTAGCCCGTGACTAGTAG 58.987 52.381 0.00 0.00 40.08 2.57
626 627 2.113860 ACGTTAGCCCGTGACTAGTA 57.886 50.000 0.00 0.00 40.08 1.82
627 628 1.740025 GTACGTTAGCCCGTGACTAGT 59.260 52.381 0.00 0.00 41.92 2.57
628 629 2.012673 AGTACGTTAGCCCGTGACTAG 58.987 52.381 0.00 0.00 41.92 2.57
629 630 2.113860 AGTACGTTAGCCCGTGACTA 57.886 50.000 0.00 0.00 41.92 2.59
630 631 2.012673 CTAGTACGTTAGCCCGTGACT 58.987 52.381 0.00 0.00 41.92 3.41
631 632 2.009774 TCTAGTACGTTAGCCCGTGAC 58.990 52.381 0.00 0.00 41.92 3.67
632 633 2.401583 TCTAGTACGTTAGCCCGTGA 57.598 50.000 0.00 0.00 41.92 4.35
633 634 3.705043 ATTCTAGTACGTTAGCCCGTG 57.295 47.619 0.00 0.00 41.92 4.94
634 635 6.396829 AAATATTCTAGTACGTTAGCCCGT 57.603 37.500 0.00 0.00 44.50 5.28
671 672 9.869757 GTTGCAACAGGGTATAAATATTCTTTT 57.130 29.630 24.52 0.00 0.00 2.27
672 673 9.030452 TGTTGCAACAGGGTATAAATATTCTTT 57.970 29.630 27.96 0.00 34.30 2.52
673 674 8.466798 GTGTTGCAACAGGGTATAAATATTCTT 58.533 33.333 31.81 0.00 40.05 2.52
674 675 7.613801 TGTGTTGCAACAGGGTATAAATATTCT 59.386 33.333 31.81 0.00 40.05 2.40
675 676 7.700656 GTGTGTTGCAACAGGGTATAAATATTC 59.299 37.037 31.81 15.10 40.05 1.75
676 677 7.543756 GTGTGTTGCAACAGGGTATAAATATT 58.456 34.615 31.81 0.00 40.05 1.28
677 678 6.183360 CGTGTGTTGCAACAGGGTATAAATAT 60.183 38.462 31.81 0.00 40.05 1.28
678 679 5.122554 CGTGTGTTGCAACAGGGTATAAATA 59.877 40.000 31.81 2.96 40.05 1.40
679 680 4.083003 CGTGTGTTGCAACAGGGTATAAAT 60.083 41.667 31.81 0.00 40.05 1.40
680 681 3.251245 CGTGTGTTGCAACAGGGTATAAA 59.749 43.478 31.81 4.33 40.05 1.40
681 682 2.809119 CGTGTGTTGCAACAGGGTATAA 59.191 45.455 31.81 5.12 40.05 0.98
682 683 2.418692 CGTGTGTTGCAACAGGGTATA 58.581 47.619 31.81 11.69 40.05 1.47
683 684 1.234821 CGTGTGTTGCAACAGGGTAT 58.765 50.000 31.81 0.00 40.05 2.73
684 685 0.816018 CCGTGTGTTGCAACAGGGTA 60.816 55.000 31.81 15.79 46.36 3.69
685 686 2.118404 CCGTGTGTTGCAACAGGGT 61.118 57.895 31.81 0.00 46.36 4.34
686 687 2.721231 CCGTGTGTTGCAACAGGG 59.279 61.111 31.81 26.35 46.34 4.45
687 688 2.721231 CCCGTGTGTTGCAACAGG 59.279 61.111 31.81 26.81 40.05 4.00
688 689 2.026014 GCCCGTGTGTTGCAACAG 59.974 61.111 31.81 20.24 40.05 3.16
689 690 1.670949 AATGCCCGTGTGTTGCAACA 61.671 50.000 27.96 27.96 38.69 3.33
690 691 1.067250 AATGCCCGTGTGTTGCAAC 59.933 52.632 22.83 22.83 38.69 4.17
691 692 1.067084 CAATGCCCGTGTGTTGCAA 59.933 52.632 0.00 0.00 38.69 4.08
692 693 2.069465 GACAATGCCCGTGTGTTGCA 62.069 55.000 0.00 0.00 39.68 4.08
693 694 1.371635 GACAATGCCCGTGTGTTGC 60.372 57.895 0.00 0.00 0.00 4.17
694 695 1.082169 CGACAATGCCCGTGTGTTG 60.082 57.895 0.00 0.00 0.00 3.33
695 696 1.525077 ACGACAATGCCCGTGTGTT 60.525 52.632 0.75 0.00 37.64 3.32
696 697 2.110213 ACGACAATGCCCGTGTGT 59.890 55.556 0.75 0.00 37.64 3.72
700 701 2.845752 ATACGCACGACAATGCCCGT 62.846 55.000 0.00 0.00 42.99 5.28
701 702 1.701545 AATACGCACGACAATGCCCG 61.702 55.000 0.00 0.00 42.99 6.13
702 703 0.248054 CAATACGCACGACAATGCCC 60.248 55.000 0.00 0.00 42.99 5.36
703 704 0.446222 ACAATACGCACGACAATGCC 59.554 50.000 0.00 0.00 42.99 4.40
704 705 1.529010 GGACAATACGCACGACAATGC 60.529 52.381 0.00 0.00 42.48 3.56
705 706 1.999735 AGGACAATACGCACGACAATG 59.000 47.619 0.00 0.00 0.00 2.82
706 707 2.380084 AGGACAATACGCACGACAAT 57.620 45.000 0.00 0.00 0.00 2.71
707 708 2.229543 ACTAGGACAATACGCACGACAA 59.770 45.455 0.00 0.00 0.00 3.18
708 709 1.814394 ACTAGGACAATACGCACGACA 59.186 47.619 0.00 0.00 0.00 4.35
709 710 2.556534 ACTAGGACAATACGCACGAC 57.443 50.000 0.00 0.00 0.00 4.34
710 711 5.059161 AGTATACTAGGACAATACGCACGA 58.941 41.667 2.75 0.00 32.52 4.35
711 712 5.354054 AGTATACTAGGACAATACGCACG 57.646 43.478 2.75 0.00 32.52 5.34
712 713 6.501781 ACAAGTATACTAGGACAATACGCAC 58.498 40.000 5.65 0.00 32.52 5.34
713 714 6.704289 ACAAGTATACTAGGACAATACGCA 57.296 37.500 5.65 0.00 32.52 5.24
714 715 8.092521 TCTACAAGTATACTAGGACAATACGC 57.907 38.462 5.65 0.00 32.52 4.42
718 719 8.082852 CGCATTCTACAAGTATACTAGGACAAT 58.917 37.037 5.65 0.21 0.00 2.71
719 720 7.283807 TCGCATTCTACAAGTATACTAGGACAA 59.716 37.037 5.65 0.00 0.00 3.18
720 721 6.769341 TCGCATTCTACAAGTATACTAGGACA 59.231 38.462 5.65 0.00 0.00 4.02
721 722 7.076983 GTCGCATTCTACAAGTATACTAGGAC 58.923 42.308 5.65 0.00 0.00 3.85
722 723 6.206243 GGTCGCATTCTACAAGTATACTAGGA 59.794 42.308 5.65 0.00 0.00 2.94
723 724 6.016527 TGGTCGCATTCTACAAGTATACTAGG 60.017 42.308 5.65 4.41 0.00 3.02
724 725 6.967135 TGGTCGCATTCTACAAGTATACTAG 58.033 40.000 5.65 0.01 0.00 2.57
725 726 6.947644 TGGTCGCATTCTACAAGTATACTA 57.052 37.500 5.65 0.00 0.00 1.82
726 727 5.847111 TGGTCGCATTCTACAAGTATACT 57.153 39.130 0.00 0.00 0.00 2.12
727 728 5.983720 ACATGGTCGCATTCTACAAGTATAC 59.016 40.000 0.00 0.00 0.00 1.47
728 729 6.156748 ACATGGTCGCATTCTACAAGTATA 57.843 37.500 0.00 0.00 0.00 1.47
729 730 5.023533 ACATGGTCGCATTCTACAAGTAT 57.976 39.130 0.00 0.00 0.00 2.12
730 731 4.465632 ACATGGTCGCATTCTACAAGTA 57.534 40.909 0.00 0.00 0.00 2.24
731 732 3.334583 ACATGGTCGCATTCTACAAGT 57.665 42.857 0.00 0.00 0.00 3.16
732 733 4.870426 ACTAACATGGTCGCATTCTACAAG 59.130 41.667 0.00 0.00 0.00 3.16
733 734 4.629634 CACTAACATGGTCGCATTCTACAA 59.370 41.667 0.00 0.00 0.00 2.41
734 735 4.081917 TCACTAACATGGTCGCATTCTACA 60.082 41.667 0.00 0.00 0.00 2.74
735 736 4.430007 TCACTAACATGGTCGCATTCTAC 58.570 43.478 0.00 0.00 0.00 2.59
736 737 4.159693 ACTCACTAACATGGTCGCATTCTA 59.840 41.667 0.00 0.00 0.00 2.10
737 738 3.055819 ACTCACTAACATGGTCGCATTCT 60.056 43.478 0.00 0.00 0.00 2.40
738 739 3.062639 CACTCACTAACATGGTCGCATTC 59.937 47.826 0.00 0.00 0.00 2.67
739 740 3.002791 CACTCACTAACATGGTCGCATT 58.997 45.455 0.00 0.00 0.00 3.56
740 741 2.233676 TCACTCACTAACATGGTCGCAT 59.766 45.455 0.00 0.00 0.00 4.73
741 742 1.616374 TCACTCACTAACATGGTCGCA 59.384 47.619 0.00 0.00 0.00 5.10
742 743 2.363788 TCACTCACTAACATGGTCGC 57.636 50.000 0.00 0.00 0.00 5.19
743 744 3.432252 GGTTTCACTCACTAACATGGTCG 59.568 47.826 0.00 0.00 0.00 4.79
744 745 3.432252 CGGTTTCACTCACTAACATGGTC 59.568 47.826 0.00 0.00 0.00 4.02
745 746 3.399330 CGGTTTCACTCACTAACATGGT 58.601 45.455 0.00 0.00 0.00 3.55
746 747 2.742053 CCGGTTTCACTCACTAACATGG 59.258 50.000 0.00 0.00 0.00 3.66
747 748 3.399330 ACCGGTTTCACTCACTAACATG 58.601 45.455 0.00 0.00 0.00 3.21
748 749 3.660865 GACCGGTTTCACTCACTAACAT 58.339 45.455 9.42 0.00 0.00 2.71
749 750 2.544277 CGACCGGTTTCACTCACTAACA 60.544 50.000 9.42 0.00 0.00 2.41
750 751 2.056577 CGACCGGTTTCACTCACTAAC 58.943 52.381 9.42 0.00 0.00 2.34
751 752 1.955778 TCGACCGGTTTCACTCACTAA 59.044 47.619 9.42 0.00 0.00 2.24
752 753 1.608055 TCGACCGGTTTCACTCACTA 58.392 50.000 9.42 0.00 0.00 2.74
753 754 0.966920 ATCGACCGGTTTCACTCACT 59.033 50.000 9.42 0.00 0.00 3.41
754 755 1.336517 TGATCGACCGGTTTCACTCAC 60.337 52.381 9.42 0.00 0.00 3.51
755 756 0.963225 TGATCGACCGGTTTCACTCA 59.037 50.000 9.42 5.35 0.00 3.41
756 757 1.725164 GTTGATCGACCGGTTTCACTC 59.275 52.381 9.42 2.50 0.00 3.51
757 758 1.343465 AGTTGATCGACCGGTTTCACT 59.657 47.619 9.42 9.79 0.00 3.41
758 759 1.792006 AGTTGATCGACCGGTTTCAC 58.208 50.000 9.42 7.83 0.00 3.18
759 760 2.559668 AGTAGTTGATCGACCGGTTTCA 59.440 45.455 9.42 10.24 0.00 2.69
760 761 3.177487 GAGTAGTTGATCGACCGGTTTC 58.823 50.000 9.42 7.40 0.00 2.78
761 762 2.094338 GGAGTAGTTGATCGACCGGTTT 60.094 50.000 9.42 0.00 0.00 3.27
762 763 1.475682 GGAGTAGTTGATCGACCGGTT 59.524 52.381 9.42 0.00 0.00 4.44
763 764 1.101331 GGAGTAGTTGATCGACCGGT 58.899 55.000 6.92 6.92 0.00 5.28
764 765 1.334243 GAGGAGTAGTTGATCGACCGG 59.666 57.143 9.62 0.00 0.00 5.28
765 766 1.334243 GGAGGAGTAGTTGATCGACCG 59.666 57.143 9.62 0.00 0.00 4.79
766 767 2.359531 CTGGAGGAGTAGTTGATCGACC 59.640 54.545 9.62 0.00 0.00 4.79
767 768 3.018149 ACTGGAGGAGTAGTTGATCGAC 58.982 50.000 4.78 4.78 30.86 4.20
768 769 3.367646 ACTGGAGGAGTAGTTGATCGA 57.632 47.619 0.00 0.00 30.86 3.59
769 770 4.822036 CTACTGGAGGAGTAGTTGATCG 57.178 50.000 0.00 0.00 46.53 3.69
833 834 7.126061 TCCATTCCAAAGACTCATCTAGTAGA 58.874 38.462 1.45 1.45 39.07 2.59
842 843 4.136796 CAACACTCCATTCCAAAGACTCA 58.863 43.478 0.00 0.00 0.00 3.41
847 848 8.306038 TCAATAATTCAACACTCCATTCCAAAG 58.694 33.333 0.00 0.00 0.00 2.77
849 850 7.232330 TGTCAATAATTCAACACTCCATTCCAA 59.768 33.333 0.00 0.00 0.00 3.53
873 874 5.539955 ACAAATTGACATTTCTAGCCCTTGT 59.460 36.000 0.00 0.00 29.41 3.16
899 900 3.311110 GGAGCACGGGGACACTCA 61.311 66.667 0.00 0.00 0.00 3.41
907 908 4.235360 CGTATTTATAGAAGGAGCACGGG 58.765 47.826 0.00 0.00 0.00 5.28
995 996 1.325355 CTGCCCCATAGCCATTCTTG 58.675 55.000 0.00 0.00 0.00 3.02
1013 1020 2.188994 GCTTGATGCGCCTCTCCT 59.811 61.111 13.93 0.00 0.00 3.69
1098 1110 8.174484 AGAAATTACTTATACATATGCTCGCG 57.826 34.615 0.00 0.00 0.00 5.87
1115 1127 3.679980 TCACGAGCTGCTCAAGAAATTAC 59.320 43.478 27.46 0.00 0.00 1.89
1116 1128 3.925379 TCACGAGCTGCTCAAGAAATTA 58.075 40.909 27.46 2.13 0.00 1.40
1117 1129 2.771089 TCACGAGCTGCTCAAGAAATT 58.229 42.857 27.46 1.47 0.00 1.82
1118 1130 2.462456 TCACGAGCTGCTCAAGAAAT 57.538 45.000 27.46 4.36 0.00 2.17
1235 1267 0.817654 TGTAGCTGTCGACCTGGATG 59.182 55.000 14.12 0.00 0.00 3.51
1723 1921 7.281324 CACCCACAACTTATTTTATCATACGGA 59.719 37.037 0.00 0.00 0.00 4.69
1724 1922 7.281324 TCACCCACAACTTATTTTATCATACGG 59.719 37.037 0.00 0.00 0.00 4.02
1726 1924 9.783256 GTTCACCCACAACTTATTTTATCATAC 57.217 33.333 0.00 0.00 0.00 2.39
1727 1925 9.747898 AGTTCACCCACAACTTATTTTATCATA 57.252 29.630 0.00 0.00 29.29 2.15
1773 3410 4.389077 CCAAAACTCTAGAGCTAAACCACG 59.611 45.833 19.97 0.00 0.00 4.94
1774 3411 4.695928 CCCAAAACTCTAGAGCTAAACCAC 59.304 45.833 19.97 0.00 0.00 4.16
1785 3422 5.102953 TGGTCATCATCCCAAAACTCTAG 57.897 43.478 0.00 0.00 0.00 2.43
1832 3478 3.455910 CCCTTGAGAGGATTACACATCCA 59.544 47.826 3.72 0.00 46.74 3.41
1873 3524 9.932207 TGATTCTGCAAATACTTGATTGATTTT 57.068 25.926 0.00 0.00 34.14 1.82
1898 3549 4.149747 ACTCAACAAAAGCACAAAACGTTG 59.850 37.500 0.00 0.00 40.84 4.10
2201 3927 8.937207 AATAGTAACGATAATACTCCCTCTGT 57.063 34.615 0.00 0.00 35.34 3.41
2233 3959 2.983907 TCGACCTCGATGAGTAGAGT 57.016 50.000 0.00 0.00 44.22 3.24
2418 4155 5.697633 TCACGATAGGTGGTAACAGTTTTTC 59.302 40.000 0.00 0.00 46.96 2.29
2503 4259 1.615392 GCTGCATTGGTGGGATAATCC 59.385 52.381 0.00 0.00 35.23 3.01
2505 4261 1.063038 TGGCTGCATTGGTGGGATAAT 60.063 47.619 0.50 0.00 0.00 1.28
2506 4262 0.334335 TGGCTGCATTGGTGGGATAA 59.666 50.000 0.50 0.00 0.00 1.75
2507 4263 0.557238 ATGGCTGCATTGGTGGGATA 59.443 50.000 0.50 0.00 0.00 2.59
2508 4264 0.557238 TATGGCTGCATTGGTGGGAT 59.443 50.000 0.50 0.00 0.00 3.85
2510 4266 0.683828 TGTATGGCTGCATTGGTGGG 60.684 55.000 0.50 0.00 0.00 4.61
2511 4267 0.742505 CTGTATGGCTGCATTGGTGG 59.257 55.000 0.50 0.00 0.00 4.61
2560 4316 6.947464 TGGGAACAAATTCTTTTGGTTTACA 58.053 32.000 3.76 0.00 42.80 2.41
2561 4317 7.041440 CCATGGGAACAAATTCTTTTGGTTTAC 60.041 37.037 2.85 0.00 42.80 2.01
2562 4318 6.995091 CCATGGGAACAAATTCTTTTGGTTTA 59.005 34.615 2.85 0.00 42.80 2.01
2563 4319 5.827267 CCATGGGAACAAATTCTTTTGGTTT 59.173 36.000 2.85 0.00 42.80 3.27
2578 4334 1.620822 ACAGAAGCAACCATGGGAAC 58.379 50.000 18.09 4.23 0.00 3.62
2646 4405 3.576078 TTCTGCCTCCAAAGAAGACAA 57.424 42.857 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.