Multiple sequence alignment - TraesCS5A01G041600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G041600 chr5A 100.000 4677 0 0 1 4677 37628130 37623454 0.000000e+00 8637
1 TraesCS5A01G041600 chr5A 97.638 762 11 6 2356 3116 493018146 493017391 0.000000e+00 1301
2 TraesCS5A01G041600 chr5A 94.043 789 31 10 2345 3119 616921870 616922656 0.000000e+00 1182
3 TraesCS5A01G041600 chr5B 90.183 1691 112 24 692 2355 47584173 47585836 0.000000e+00 2154
4 TraesCS5A01G041600 chr5B 93.996 1066 62 2 3115 4180 47585828 47586891 0.000000e+00 1613
5 TraesCS5A01G041600 chr5B 96.391 471 16 1 4208 4677 47587536 47588006 0.000000e+00 774
6 TraesCS5A01G041600 chr5D 89.617 1695 123 23 667 2355 46316312 46314665 0.000000e+00 2106
7 TraesCS5A01G041600 chr5D 87.819 1059 100 16 3115 4158 46314673 46313629 0.000000e+00 1214
8 TraesCS5A01G041600 chr6A 96.373 772 15 8 2356 3116 82102592 82101823 0.000000e+00 1258
9 TraesCS5A01G041600 chr6A 95.567 767 19 5 2361 3119 66644676 66643917 0.000000e+00 1214
10 TraesCS5A01G041600 chr6A 88.115 244 24 5 2332 2573 555438202 555437962 7.660000e-73 285
11 TraesCS5A01G041600 chr3A 95.349 774 23 11 2356 3120 44586975 44586206 0.000000e+00 1218
12 TraesCS5A01G041600 chr3A 95.550 764 23 6 2356 3111 744083405 744084165 0.000000e+00 1212
13 TraesCS5A01G041600 chr4A 95.207 772 23 9 2355 3115 683260356 683259588 0.000000e+00 1208
14 TraesCS5A01G041600 chr4A 94.643 784 28 10 2343 3115 36520312 36521092 0.000000e+00 1203
15 TraesCS5A01G041600 chr4A 94.825 773 25 11 2356 3116 679188551 679187782 0.000000e+00 1192
16 TraesCS5A01G041600 chr7D 79.147 211 31 8 335 543 84422673 84422474 2.940000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G041600 chr5A 37623454 37628130 4676 True 8637.000000 8637 100.000000 1 4677 1 chr5A.!!$R1 4676
1 TraesCS5A01G041600 chr5A 493017391 493018146 755 True 1301.000000 1301 97.638000 2356 3116 1 chr5A.!!$R2 760
2 TraesCS5A01G041600 chr5A 616921870 616922656 786 False 1182.000000 1182 94.043000 2345 3119 1 chr5A.!!$F1 774
3 TraesCS5A01G041600 chr5B 47584173 47588006 3833 False 1513.666667 2154 93.523333 692 4677 3 chr5B.!!$F1 3985
4 TraesCS5A01G041600 chr5D 46313629 46316312 2683 True 1660.000000 2106 88.718000 667 4158 2 chr5D.!!$R1 3491
5 TraesCS5A01G041600 chr6A 82101823 82102592 769 True 1258.000000 1258 96.373000 2356 3116 1 chr6A.!!$R2 760
6 TraesCS5A01G041600 chr6A 66643917 66644676 759 True 1214.000000 1214 95.567000 2361 3119 1 chr6A.!!$R1 758
7 TraesCS5A01G041600 chr3A 44586206 44586975 769 True 1218.000000 1218 95.349000 2356 3120 1 chr3A.!!$R1 764
8 TraesCS5A01G041600 chr3A 744083405 744084165 760 False 1212.000000 1212 95.550000 2356 3111 1 chr3A.!!$F1 755
9 TraesCS5A01G041600 chr4A 683259588 683260356 768 True 1208.000000 1208 95.207000 2355 3115 1 chr4A.!!$R2 760
10 TraesCS5A01G041600 chr4A 36520312 36521092 780 False 1203.000000 1203 94.643000 2343 3115 1 chr4A.!!$F1 772
11 TraesCS5A01G041600 chr4A 679187782 679188551 769 True 1192.000000 1192 94.825000 2356 3116 1 chr4A.!!$R1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 635 0.029035 CAGGCATCGAATTGCTGCTC 59.971 55.000 10.61 0.63 42.38 4.26 F
1251 1275 0.034896 ATCCTCGCGTGTGGAAAACT 59.965 50.000 22.31 4.57 40.90 2.66 F
1601 1626 0.035458 AGCCAGAGTTCCGTTTCAGG 59.965 55.000 0.00 0.00 0.00 3.86 F
1613 1640 1.262950 CGTTTCAGGATTTGCGTGACA 59.737 47.619 0.00 0.00 40.78 3.58 F
3324 3388 1.243902 TTCATGTTTCCTTCGCACCC 58.756 50.000 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2254 2284 0.181350 CCCTCCATGCAAGTAGGACC 59.819 60.000 1.59 0.0 0.00 4.46 R
2940 3004 1.071299 AGTCAGCATGCCACGTCAA 59.929 52.632 15.66 0.0 34.76 3.18 R
3316 3380 0.988832 AAACCTAGATGGGGTGCGAA 59.011 50.000 0.00 0.0 41.11 4.70 R
3472 3536 1.003545 CGCTTGCCTTTGATGTATCGG 60.004 52.381 0.00 0.0 0.00 4.18 R
4537 5233 0.761187 TGTATCCAGGATGAGCTGCC 59.239 55.000 12.80 0.0 39.69 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.869272 GCATCTGGCGCGACAAGG 61.869 66.667 19.01 10.39 0.00 3.61
18 19 3.869272 CATCTGGCGCGACAAGGC 61.869 66.667 19.01 0.00 0.00 4.35
24 25 3.204827 GCGCGACAAGGCCATGAT 61.205 61.111 16.33 0.00 0.00 2.45
25 26 2.711311 CGCGACAAGGCCATGATG 59.289 61.111 16.33 7.40 0.00 3.07
26 27 2.827051 CGCGACAAGGCCATGATGG 61.827 63.158 16.33 7.21 41.55 3.51
27 28 1.451927 GCGACAAGGCCATGATGGA 60.452 57.895 17.22 0.00 40.96 3.41
28 29 1.442526 GCGACAAGGCCATGATGGAG 61.443 60.000 17.22 3.91 40.96 3.86
29 30 0.816825 CGACAAGGCCATGATGGAGG 60.817 60.000 17.22 3.13 40.96 4.30
30 31 0.548031 GACAAGGCCATGATGGAGGA 59.452 55.000 17.22 0.00 40.96 3.71
31 32 0.549950 ACAAGGCCATGATGGAGGAG 59.450 55.000 17.22 4.28 40.96 3.69
32 33 0.178998 CAAGGCCATGATGGAGGAGG 60.179 60.000 17.22 0.00 40.96 4.30
33 34 0.625683 AAGGCCATGATGGAGGAGGT 60.626 55.000 17.22 0.00 40.96 3.85
34 35 1.150081 GGCCATGATGGAGGAGGTG 59.850 63.158 17.22 0.00 40.96 4.00
35 36 1.527844 GCCATGATGGAGGAGGTGC 60.528 63.158 17.22 0.00 40.96 5.01
36 37 1.150081 CCATGATGGAGGAGGTGCC 59.850 63.158 5.27 0.00 40.96 5.01
37 38 1.150081 CATGATGGAGGAGGTGCCC 59.850 63.158 0.00 0.00 37.37 5.36
38 39 2.081161 ATGATGGAGGAGGTGCCCC 61.081 63.158 0.00 0.00 37.37 5.80
39 40 2.367512 GATGGAGGAGGTGCCCCT 60.368 66.667 0.00 0.00 46.66 4.79
40 41 2.693864 ATGGAGGAGGTGCCCCTG 60.694 66.667 0.00 0.00 42.86 4.45
52 53 2.887360 CCCCTGGCAATTGCGAAG 59.113 61.111 23.48 21.30 43.26 3.79
53 54 2.713967 CCCCTGGCAATTGCGAAGG 61.714 63.158 30.36 30.36 42.12 3.46
54 55 2.182537 CCTGGCAATTGCGAAGGC 59.817 61.111 28.01 14.99 43.26 4.35
55 56 2.202518 CTGGCAATTGCGAAGGCG 60.203 61.111 23.48 4.74 44.10 5.52
56 57 2.981560 CTGGCAATTGCGAAGGCGT 61.982 57.895 23.48 0.00 44.10 5.68
57 58 2.504681 GGCAATTGCGAAGGCGTG 60.505 61.111 23.48 0.00 44.10 5.34
58 59 2.255252 GCAATTGCGAAGGCGTGT 59.745 55.556 15.87 0.00 44.10 4.49
59 60 2.082366 GCAATTGCGAAGGCGTGTG 61.082 57.895 15.87 0.00 44.10 3.82
60 61 1.442520 CAATTGCGAAGGCGTGTGG 60.443 57.895 0.00 0.00 44.10 4.17
61 62 3.267597 AATTGCGAAGGCGTGTGGC 62.268 57.895 0.00 0.00 44.10 5.01
89 90 2.811317 CAACGGCAGCTCCTCGTC 60.811 66.667 6.07 0.00 36.01 4.20
90 91 4.421479 AACGGCAGCTCCTCGTCG 62.421 66.667 6.07 0.34 36.01 5.12
93 94 4.803426 GGCAGCTCCTCGTCGTGG 62.803 72.222 7.02 7.02 0.00 4.94
94 95 3.749064 GCAGCTCCTCGTCGTGGA 61.749 66.667 14.89 14.89 0.00 4.02
98 99 3.201494 CTCCTCGTCGTGGAGCAT 58.799 61.111 25.65 0.00 43.67 3.79
99 100 1.064946 CTCCTCGTCGTGGAGCATC 59.935 63.158 25.65 0.00 43.67 3.91
100 101 1.657751 CTCCTCGTCGTGGAGCATCA 61.658 60.000 25.65 0.83 43.67 3.07
101 102 1.037579 TCCTCGTCGTGGAGCATCAT 61.038 55.000 11.90 0.00 36.25 2.45
102 103 0.873312 CCTCGTCGTGGAGCATCATG 60.873 60.000 7.59 0.00 36.25 3.07
103 104 0.101219 CTCGTCGTGGAGCATCATGA 59.899 55.000 0.00 0.00 36.25 3.07
104 105 0.179137 TCGTCGTGGAGCATCATGAC 60.179 55.000 16.76 16.76 45.34 3.06
105 106 2.291843 GTCGTGGAGCATCATGACG 58.708 57.895 13.37 0.00 41.79 4.35
106 107 1.141665 TCGTGGAGCATCATGACGG 59.858 57.895 0.00 0.00 35.37 4.79
107 108 2.528743 CGTGGAGCATCATGACGGC 61.529 63.158 12.14 12.14 36.25 5.68
108 109 2.202919 TGGAGCATCATGACGGCG 60.203 61.111 4.80 4.80 36.25 6.46
109 110 2.969238 GGAGCATCATGACGGCGG 60.969 66.667 13.24 0.00 36.25 6.13
110 111 2.106938 GAGCATCATGACGGCGGA 59.893 61.111 13.24 0.00 33.17 5.54
111 112 1.953138 GAGCATCATGACGGCGGAG 60.953 63.158 13.24 0.00 33.17 4.63
112 113 2.969238 GCATCATGACGGCGGAGG 60.969 66.667 13.24 0.91 0.00 4.30
113 114 2.814604 CATCATGACGGCGGAGGA 59.185 61.111 13.24 4.74 0.00 3.71
114 115 1.300465 CATCATGACGGCGGAGGAG 60.300 63.158 13.24 0.00 0.00 3.69
115 116 1.455773 ATCATGACGGCGGAGGAGA 60.456 57.895 13.24 2.56 0.00 3.71
116 117 1.459455 ATCATGACGGCGGAGGAGAG 61.459 60.000 13.24 0.00 0.00 3.20
117 118 2.835431 ATGACGGCGGAGGAGAGG 60.835 66.667 13.24 0.00 0.00 3.69
123 124 3.462678 GCGGAGGAGAGGGTGGTC 61.463 72.222 0.00 0.00 0.00 4.02
124 125 2.037367 CGGAGGAGAGGGTGGTCA 59.963 66.667 0.00 0.00 0.00 4.02
125 126 1.609501 CGGAGGAGAGGGTGGTCAA 60.610 63.158 0.00 0.00 0.00 3.18
126 127 1.192146 CGGAGGAGAGGGTGGTCAAA 61.192 60.000 0.00 0.00 0.00 2.69
127 128 1.064825 GGAGGAGAGGGTGGTCAAAA 58.935 55.000 0.00 0.00 0.00 2.44
128 129 1.423921 GGAGGAGAGGGTGGTCAAAAA 59.576 52.381 0.00 0.00 0.00 1.94
129 130 2.553247 GGAGGAGAGGGTGGTCAAAAAG 60.553 54.545 0.00 0.00 0.00 2.27
130 131 1.425448 AGGAGAGGGTGGTCAAAAAGG 59.575 52.381 0.00 0.00 0.00 3.11
131 132 1.145119 GGAGAGGGTGGTCAAAAAGGT 59.855 52.381 0.00 0.00 0.00 3.50
132 133 2.374170 GGAGAGGGTGGTCAAAAAGGTA 59.626 50.000 0.00 0.00 0.00 3.08
133 134 3.559384 GGAGAGGGTGGTCAAAAAGGTAG 60.559 52.174 0.00 0.00 0.00 3.18
134 135 2.375509 AGAGGGTGGTCAAAAAGGTAGG 59.624 50.000 0.00 0.00 0.00 3.18
135 136 1.203013 AGGGTGGTCAAAAAGGTAGGC 60.203 52.381 0.00 0.00 0.00 3.93
136 137 0.879090 GGTGGTCAAAAAGGTAGGCG 59.121 55.000 0.00 0.00 0.00 5.52
137 138 0.879090 GTGGTCAAAAAGGTAGGCGG 59.121 55.000 0.00 0.00 0.00 6.13
138 139 0.766131 TGGTCAAAAAGGTAGGCGGA 59.234 50.000 0.00 0.00 0.00 5.54
139 140 1.271163 TGGTCAAAAAGGTAGGCGGAG 60.271 52.381 0.00 0.00 0.00 4.63
140 141 1.450025 GTCAAAAAGGTAGGCGGAGG 58.550 55.000 0.00 0.00 0.00 4.30
141 142 0.326927 TCAAAAAGGTAGGCGGAGGG 59.673 55.000 0.00 0.00 0.00 4.30
142 143 0.326927 CAAAAAGGTAGGCGGAGGGA 59.673 55.000 0.00 0.00 0.00 4.20
143 144 0.618981 AAAAAGGTAGGCGGAGGGAG 59.381 55.000 0.00 0.00 0.00 4.30
144 145 0.546988 AAAAGGTAGGCGGAGGGAGT 60.547 55.000 0.00 0.00 0.00 3.85
145 146 0.337428 AAAGGTAGGCGGAGGGAGTA 59.663 55.000 0.00 0.00 0.00 2.59
146 147 0.106116 AAGGTAGGCGGAGGGAGTAG 60.106 60.000 0.00 0.00 0.00 2.57
147 148 2.201708 GGTAGGCGGAGGGAGTAGC 61.202 68.421 0.00 0.00 0.00 3.58
148 149 1.455217 GTAGGCGGAGGGAGTAGCA 60.455 63.158 0.00 0.00 0.00 3.49
149 150 1.455217 TAGGCGGAGGGAGTAGCAC 60.455 63.158 0.00 0.00 0.00 4.40
150 151 2.219449 TAGGCGGAGGGAGTAGCACA 62.219 60.000 0.00 0.00 0.00 4.57
151 152 2.656069 GGCGGAGGGAGTAGCACAA 61.656 63.158 0.00 0.00 0.00 3.33
152 153 1.448013 GCGGAGGGAGTAGCACAAC 60.448 63.158 0.00 0.00 0.00 3.32
153 154 1.153823 CGGAGGGAGTAGCACAACG 60.154 63.158 0.00 0.00 0.00 4.10
154 155 1.592400 CGGAGGGAGTAGCACAACGA 61.592 60.000 0.00 0.00 0.00 3.85
155 156 0.606604 GGAGGGAGTAGCACAACGAA 59.393 55.000 0.00 0.00 0.00 3.85
156 157 1.672145 GGAGGGAGTAGCACAACGAAC 60.672 57.143 0.00 0.00 0.00 3.95
157 158 0.320697 AGGGAGTAGCACAACGAACC 59.679 55.000 0.00 0.00 0.00 3.62
158 159 0.034337 GGGAGTAGCACAACGAACCA 59.966 55.000 0.00 0.00 0.00 3.67
159 160 1.145803 GGAGTAGCACAACGAACCAC 58.854 55.000 0.00 0.00 0.00 4.16
161 162 1.203313 GTAGCACAACGAACCACGC 59.797 57.895 0.00 0.00 46.94 5.34
162 163 1.957186 TAGCACAACGAACCACGCC 60.957 57.895 0.00 0.00 46.94 5.68
163 164 4.659874 GCACAACGAACCACGCCG 62.660 66.667 0.00 0.00 46.94 6.46
164 165 4.007940 CACAACGAACCACGCCGG 62.008 66.667 0.00 0.00 46.94 6.13
177 178 3.195698 GCCGGGCGTTTGCTCTAG 61.196 66.667 1.81 0.00 40.44 2.43
178 179 2.577059 CCGGGCGTTTGCTCTAGA 59.423 61.111 0.00 0.00 40.44 2.43
179 180 1.079405 CCGGGCGTTTGCTCTAGAA 60.079 57.895 0.00 0.00 40.44 2.10
180 181 0.672401 CCGGGCGTTTGCTCTAGAAA 60.672 55.000 0.00 0.00 40.44 2.52
181 182 1.369625 CGGGCGTTTGCTCTAGAAAT 58.630 50.000 0.00 0.00 40.44 2.17
182 183 1.737793 CGGGCGTTTGCTCTAGAAATT 59.262 47.619 0.00 0.00 40.44 1.82
183 184 2.161609 CGGGCGTTTGCTCTAGAAATTT 59.838 45.455 0.00 0.00 40.44 1.82
184 185 3.501950 GGGCGTTTGCTCTAGAAATTTG 58.498 45.455 0.00 0.00 39.08 2.32
185 186 3.190535 GGGCGTTTGCTCTAGAAATTTGA 59.809 43.478 0.00 0.00 39.08 2.69
186 187 4.142381 GGGCGTTTGCTCTAGAAATTTGAT 60.142 41.667 0.00 0.00 39.08 2.57
187 188 5.030936 GGCGTTTGCTCTAGAAATTTGATC 58.969 41.667 0.00 0.00 42.25 2.92
188 189 5.163713 GGCGTTTGCTCTAGAAATTTGATCT 60.164 40.000 0.00 0.00 42.25 2.75
189 190 6.037172 GGCGTTTGCTCTAGAAATTTGATCTA 59.963 38.462 0.00 0.00 42.25 1.98
190 191 6.902417 GCGTTTGCTCTAGAAATTTGATCTAC 59.098 38.462 0.00 0.00 38.39 2.59
191 192 7.413000 GCGTTTGCTCTAGAAATTTGATCTACA 60.413 37.037 0.00 0.00 38.39 2.74
192 193 8.443160 CGTTTGCTCTAGAAATTTGATCTACAA 58.557 33.333 0.00 0.00 36.65 2.41
246 247 7.891498 AAAAAGGACTTTGCTCCTACTTAAA 57.109 32.000 0.00 0.00 40.04 1.52
247 248 7.891498 AAAAGGACTTTGCTCCTACTTAAAA 57.109 32.000 0.00 0.00 40.04 1.52
248 249 6.879276 AAGGACTTTGCTCCTACTTAAAAC 57.121 37.500 0.00 0.00 40.04 2.43
249 250 5.937111 AGGACTTTGCTCCTACTTAAAACA 58.063 37.500 0.00 0.00 39.06 2.83
250 251 6.362248 AGGACTTTGCTCCTACTTAAAACAA 58.638 36.000 0.00 0.00 39.06 2.83
251 252 7.004691 AGGACTTTGCTCCTACTTAAAACAAT 58.995 34.615 0.00 0.00 39.06 2.71
252 253 8.161425 AGGACTTTGCTCCTACTTAAAACAATA 58.839 33.333 0.00 0.00 39.06 1.90
253 254 8.451748 GGACTTTGCTCCTACTTAAAACAATAG 58.548 37.037 0.00 0.00 0.00 1.73
254 255 8.919777 ACTTTGCTCCTACTTAAAACAATAGT 57.080 30.769 0.00 0.00 0.00 2.12
255 256 9.350951 ACTTTGCTCCTACTTAAAACAATAGTT 57.649 29.630 0.00 0.00 40.40 2.24
256 257 9.612620 CTTTGCTCCTACTTAAAACAATAGTTG 57.387 33.333 0.00 0.00 38.17 3.16
258 259 9.781633 TTGCTCCTACTTAAAACAATAGTTGTA 57.218 29.630 0.00 0.00 44.59 2.41
259 260 9.781633 TGCTCCTACTTAAAACAATAGTTGTAA 57.218 29.630 0.00 0.00 44.59 2.41
273 274 8.395633 ACAATAGTTGTAATTGTATTTCCGAGC 58.604 33.333 0.00 0.00 43.84 5.03
274 275 8.612619 CAATAGTTGTAATTGTATTTCCGAGCT 58.387 33.333 0.00 0.00 31.13 4.09
275 276 8.732746 ATAGTTGTAATTGTATTTCCGAGCTT 57.267 30.769 0.00 0.00 0.00 3.74
276 277 9.826574 ATAGTTGTAATTGTATTTCCGAGCTTA 57.173 29.630 0.00 0.00 0.00 3.09
277 278 8.197988 AGTTGTAATTGTATTTCCGAGCTTAG 57.802 34.615 0.00 0.00 0.00 2.18
278 279 7.280205 AGTTGTAATTGTATTTCCGAGCTTAGG 59.720 37.037 3.02 3.02 0.00 2.69
279 280 6.646267 TGTAATTGTATTTCCGAGCTTAGGT 58.354 36.000 8.73 0.00 0.00 3.08
280 281 7.107542 TGTAATTGTATTTCCGAGCTTAGGTT 58.892 34.615 8.73 0.00 0.00 3.50
281 282 7.608761 TGTAATTGTATTTCCGAGCTTAGGTTT 59.391 33.333 8.73 0.00 0.00 3.27
282 283 9.101655 GTAATTGTATTTCCGAGCTTAGGTTTA 57.898 33.333 8.73 0.00 0.00 2.01
283 284 8.747538 AATTGTATTTCCGAGCTTAGGTTTAT 57.252 30.769 8.73 4.64 0.00 1.40
284 285 8.747538 ATTGTATTTCCGAGCTTAGGTTTATT 57.252 30.769 8.73 0.00 0.00 1.40
285 286 8.570068 TTGTATTTCCGAGCTTAGGTTTATTT 57.430 30.769 8.73 0.00 0.00 1.40
286 287 7.981142 TGTATTTCCGAGCTTAGGTTTATTTG 58.019 34.615 8.73 0.00 0.00 2.32
287 288 4.957759 TTCCGAGCTTAGGTTTATTTGC 57.042 40.909 8.73 0.00 0.00 3.68
288 289 3.945346 TCCGAGCTTAGGTTTATTTGCA 58.055 40.909 8.73 0.00 0.00 4.08
289 290 3.687698 TCCGAGCTTAGGTTTATTTGCAC 59.312 43.478 8.73 0.00 0.00 4.57
290 291 3.181500 CCGAGCTTAGGTTTATTTGCACC 60.181 47.826 0.00 0.00 0.00 5.01
291 292 3.181500 CGAGCTTAGGTTTATTTGCACCC 60.181 47.826 0.00 0.00 32.92 4.61
292 293 2.752903 AGCTTAGGTTTATTTGCACCCG 59.247 45.455 0.00 0.00 32.92 5.28
293 294 2.159296 GCTTAGGTTTATTTGCACCCGG 60.159 50.000 0.00 0.00 32.92 5.73
294 295 2.883122 TAGGTTTATTTGCACCCGGT 57.117 45.000 0.00 0.00 32.92 5.28
295 296 1.541379 AGGTTTATTTGCACCCGGTC 58.459 50.000 0.00 0.00 32.92 4.79
296 297 1.202952 AGGTTTATTTGCACCCGGTCA 60.203 47.619 0.00 0.00 32.92 4.02
297 298 1.614413 GGTTTATTTGCACCCGGTCAA 59.386 47.619 0.00 0.00 0.00 3.18
298 299 2.036089 GGTTTATTTGCACCCGGTCAAA 59.964 45.455 13.67 13.67 36.72 2.69
299 300 3.492829 GGTTTATTTGCACCCGGTCAAAA 60.493 43.478 14.81 7.61 36.02 2.44
300 301 4.120589 GTTTATTTGCACCCGGTCAAAAA 58.879 39.130 14.81 5.29 36.02 1.94
354 355 7.826260 AAAAATTGCACGGTAGATAATTTGG 57.174 32.000 0.00 0.00 32.92 3.28
355 356 6.524101 AAATTGCACGGTAGATAATTTGGT 57.476 33.333 0.00 0.00 31.79 3.67
356 357 4.955925 TTGCACGGTAGATAATTTGGTG 57.044 40.909 0.00 0.00 0.00 4.17
357 358 2.680841 TGCACGGTAGATAATTTGGTGC 59.319 45.455 6.32 6.32 46.83 5.01
358 359 2.680841 GCACGGTAGATAATTTGGTGCA 59.319 45.455 8.22 0.00 46.16 4.57
359 360 3.315191 GCACGGTAGATAATTTGGTGCAT 59.685 43.478 8.22 0.00 46.16 3.96
360 361 4.789481 GCACGGTAGATAATTTGGTGCATG 60.789 45.833 8.22 0.00 46.16 4.06
361 362 4.574421 CACGGTAGATAATTTGGTGCATGA 59.426 41.667 0.00 0.00 0.00 3.07
362 363 5.065859 CACGGTAGATAATTTGGTGCATGAA 59.934 40.000 0.00 0.00 0.00 2.57
363 364 5.296780 ACGGTAGATAATTTGGTGCATGAAG 59.703 40.000 0.00 0.00 0.00 3.02
364 365 5.296780 CGGTAGATAATTTGGTGCATGAAGT 59.703 40.000 0.00 0.00 0.00 3.01
365 366 6.498304 GGTAGATAATTTGGTGCATGAAGTG 58.502 40.000 0.00 0.00 0.00 3.16
373 374 3.266964 GCATGAAGTGCGCTCCAA 58.733 55.556 9.73 0.00 45.23 3.53
374 375 1.580942 GCATGAAGTGCGCTCCAAA 59.419 52.632 9.73 0.00 45.23 3.28
375 376 0.171903 GCATGAAGTGCGCTCCAAAT 59.828 50.000 9.73 0.00 45.23 2.32
376 377 1.403249 GCATGAAGTGCGCTCCAAATT 60.403 47.619 9.73 0.00 45.23 1.82
377 378 2.927871 GCATGAAGTGCGCTCCAAATTT 60.928 45.455 9.73 0.00 45.23 1.82
378 379 2.704725 TGAAGTGCGCTCCAAATTTC 57.295 45.000 9.73 5.21 0.00 2.17
379 380 1.952990 TGAAGTGCGCTCCAAATTTCA 59.047 42.857 9.73 7.95 0.00 2.69
380 381 2.030893 TGAAGTGCGCTCCAAATTTCAG 60.031 45.455 9.73 0.00 0.00 3.02
381 382 1.896220 AGTGCGCTCCAAATTTCAGA 58.104 45.000 9.73 0.00 0.00 3.27
382 383 2.440409 AGTGCGCTCCAAATTTCAGAT 58.560 42.857 9.73 0.00 0.00 2.90
383 384 2.421424 AGTGCGCTCCAAATTTCAGATC 59.579 45.455 9.73 0.00 0.00 2.75
384 385 2.421424 GTGCGCTCCAAATTTCAGATCT 59.579 45.455 9.73 0.00 0.00 2.75
385 386 3.084039 TGCGCTCCAAATTTCAGATCTT 58.916 40.909 9.73 0.00 0.00 2.40
386 387 3.507233 TGCGCTCCAAATTTCAGATCTTT 59.493 39.130 9.73 0.00 0.00 2.52
387 388 4.022068 TGCGCTCCAAATTTCAGATCTTTT 60.022 37.500 9.73 0.00 0.00 2.27
388 389 5.182950 TGCGCTCCAAATTTCAGATCTTTTA 59.817 36.000 9.73 0.00 0.00 1.52
389 390 6.092748 GCGCTCCAAATTTCAGATCTTTTAA 58.907 36.000 0.00 0.00 0.00 1.52
390 391 6.586082 GCGCTCCAAATTTCAGATCTTTTAAA 59.414 34.615 0.00 0.00 0.00 1.52
391 392 7.410835 GCGCTCCAAATTTCAGATCTTTTAAAC 60.411 37.037 0.00 0.00 0.00 2.01
392 393 7.594758 CGCTCCAAATTTCAGATCTTTTAAACA 59.405 33.333 0.00 0.00 0.00 2.83
393 394 9.428097 GCTCCAAATTTCAGATCTTTTAAACAT 57.572 29.630 0.00 0.00 0.00 2.71
414 415 9.709495 AAACATATGAATAGCTTTGAGCAAAAA 57.291 25.926 10.38 0.00 45.56 1.94
449 450 8.819643 ACTTAGAACAGTAAGCTTCTTTACAG 57.180 34.615 0.00 0.00 36.27 2.74
450 451 8.639761 ACTTAGAACAGTAAGCTTCTTTACAGA 58.360 33.333 0.00 0.00 36.27 3.41
451 452 8.813643 TTAGAACAGTAAGCTTCTTTACAGAC 57.186 34.615 0.00 0.00 36.27 3.51
452 453 6.224584 AGAACAGTAAGCTTCTTTACAGACC 58.775 40.000 0.00 0.00 36.27 3.85
453 454 4.895961 ACAGTAAGCTTCTTTACAGACCC 58.104 43.478 0.00 0.00 36.27 4.46
454 455 4.254492 CAGTAAGCTTCTTTACAGACCCC 58.746 47.826 0.00 0.00 36.27 4.95
455 456 2.881111 AAGCTTCTTTACAGACCCCC 57.119 50.000 0.00 0.00 0.00 5.40
456 457 1.742308 AGCTTCTTTACAGACCCCCA 58.258 50.000 0.00 0.00 0.00 4.96
457 458 2.062636 AGCTTCTTTACAGACCCCCAA 58.937 47.619 0.00 0.00 0.00 4.12
458 459 2.445525 AGCTTCTTTACAGACCCCCAAA 59.554 45.455 0.00 0.00 0.00 3.28
459 460 2.557056 GCTTCTTTACAGACCCCCAAAC 59.443 50.000 0.00 0.00 0.00 2.93
460 461 3.750922 GCTTCTTTACAGACCCCCAAACT 60.751 47.826 0.00 0.00 0.00 2.66
461 462 4.470602 CTTCTTTACAGACCCCCAAACTT 58.529 43.478 0.00 0.00 0.00 2.66
462 463 3.827722 TCTTTACAGACCCCCAAACTTG 58.172 45.455 0.00 0.00 0.00 3.16
463 464 3.203487 TCTTTACAGACCCCCAAACTTGT 59.797 43.478 0.00 0.00 0.00 3.16
464 465 2.943036 TACAGACCCCCAAACTTGTC 57.057 50.000 0.00 0.00 0.00 3.18
465 466 0.185175 ACAGACCCCCAAACTTGTCC 59.815 55.000 0.00 0.00 0.00 4.02
466 467 0.184933 CAGACCCCCAAACTTGTCCA 59.815 55.000 0.00 0.00 0.00 4.02
467 468 1.158007 AGACCCCCAAACTTGTCCAT 58.842 50.000 0.00 0.00 0.00 3.41
468 469 1.503347 AGACCCCCAAACTTGTCCATT 59.497 47.619 0.00 0.00 0.00 3.16
469 470 2.090775 AGACCCCCAAACTTGTCCATTT 60.091 45.455 0.00 0.00 0.00 2.32
470 471 2.703536 GACCCCCAAACTTGTCCATTTT 59.296 45.455 0.00 0.00 0.00 1.82
471 472 2.437651 ACCCCCAAACTTGTCCATTTTG 59.562 45.455 0.00 0.00 0.00 2.44
472 473 2.493035 CCCCAAACTTGTCCATTTTGC 58.507 47.619 0.00 0.00 0.00 3.68
473 474 2.493035 CCCAAACTTGTCCATTTTGCC 58.507 47.619 0.00 0.00 0.00 4.52
474 475 2.134346 CCAAACTTGTCCATTTTGCCG 58.866 47.619 0.00 0.00 0.00 5.69
475 476 2.223923 CCAAACTTGTCCATTTTGCCGA 60.224 45.455 0.00 0.00 0.00 5.54
476 477 3.052036 CAAACTTGTCCATTTTGCCGAG 58.948 45.455 0.00 0.00 0.00 4.63
477 478 2.270352 ACTTGTCCATTTTGCCGAGA 57.730 45.000 0.00 0.00 0.00 4.04
478 479 2.154462 ACTTGTCCATTTTGCCGAGAG 58.846 47.619 0.00 0.00 0.00 3.20
479 480 2.154462 CTTGTCCATTTTGCCGAGAGT 58.846 47.619 0.00 0.00 0.00 3.24
480 481 2.270352 TGTCCATTTTGCCGAGAGTT 57.730 45.000 0.00 0.00 0.00 3.01
481 482 3.410631 TGTCCATTTTGCCGAGAGTTA 57.589 42.857 0.00 0.00 0.00 2.24
482 483 3.071479 TGTCCATTTTGCCGAGAGTTAC 58.929 45.455 0.00 0.00 0.00 2.50
483 484 3.244422 TGTCCATTTTGCCGAGAGTTACT 60.244 43.478 0.00 0.00 0.00 2.24
484 485 3.371285 GTCCATTTTGCCGAGAGTTACTC 59.629 47.826 3.85 3.85 41.79 2.59
485 486 3.007506 TCCATTTTGCCGAGAGTTACTCA 59.992 43.478 15.23 0.00 45.14 3.41
486 487 3.751175 CCATTTTGCCGAGAGTTACTCAA 59.249 43.478 15.23 0.00 45.14 3.02
487 488 4.215399 CCATTTTGCCGAGAGTTACTCAAA 59.785 41.667 15.23 5.55 45.14 2.69
488 489 5.106157 CCATTTTGCCGAGAGTTACTCAAAT 60.106 40.000 15.23 7.56 45.14 2.32
489 490 5.356882 TTTTGCCGAGAGTTACTCAAATG 57.643 39.130 15.23 1.44 45.14 2.32
490 491 3.678056 TGCCGAGAGTTACTCAAATGT 57.322 42.857 15.23 0.00 45.14 2.71
491 492 4.002906 TGCCGAGAGTTACTCAAATGTT 57.997 40.909 15.23 0.00 45.14 2.71
492 493 3.994392 TGCCGAGAGTTACTCAAATGTTC 59.006 43.478 15.23 1.31 45.14 3.18
493 494 3.994392 GCCGAGAGTTACTCAAATGTTCA 59.006 43.478 15.23 0.00 45.14 3.18
494 495 4.451096 GCCGAGAGTTACTCAAATGTTCAA 59.549 41.667 15.23 0.00 45.14 2.69
495 496 5.049680 GCCGAGAGTTACTCAAATGTTCAAA 60.050 40.000 15.23 0.00 45.14 2.69
496 497 6.512741 GCCGAGAGTTACTCAAATGTTCAAAA 60.513 38.462 15.23 0.00 45.14 2.44
497 498 7.072030 CCGAGAGTTACTCAAATGTTCAAAAG 58.928 38.462 15.23 0.00 45.14 2.27
498 499 7.042051 CCGAGAGTTACTCAAATGTTCAAAAGA 60.042 37.037 15.23 0.00 45.14 2.52
499 500 8.499162 CGAGAGTTACTCAAATGTTCAAAAGAT 58.501 33.333 15.23 0.00 45.14 2.40
500 501 9.604626 GAGAGTTACTCAAATGTTCAAAAGATG 57.395 33.333 15.23 0.00 44.36 2.90
501 502 9.125026 AGAGTTACTCAAATGTTCAAAAGATGT 57.875 29.630 15.23 0.00 32.06 3.06
514 515 9.311916 TGTTCAAAAGATGTAAAATTTGGAGTG 57.688 29.630 0.00 0.00 34.39 3.51
515 516 8.764287 GTTCAAAAGATGTAAAATTTGGAGTGG 58.236 33.333 0.00 0.00 34.39 4.00
516 517 8.243961 TCAAAAGATGTAAAATTTGGAGTGGA 57.756 30.769 0.00 0.00 34.39 4.02
517 518 8.141268 TCAAAAGATGTAAAATTTGGAGTGGAC 58.859 33.333 0.00 0.00 34.39 4.02
518 519 6.590234 AAGATGTAAAATTTGGAGTGGACC 57.410 37.500 0.00 0.00 0.00 4.46
519 520 5.892348 AGATGTAAAATTTGGAGTGGACCT 58.108 37.500 0.00 0.00 0.00 3.85
520 521 5.946377 AGATGTAAAATTTGGAGTGGACCTC 59.054 40.000 0.00 0.00 39.67 3.85
521 522 5.055265 TGTAAAATTTGGAGTGGACCTCA 57.945 39.130 0.00 0.00 42.40 3.86
522 523 4.825085 TGTAAAATTTGGAGTGGACCTCAC 59.175 41.667 0.00 0.00 46.39 3.51
529 530 2.110213 GTGGACCTCACGCACCAA 59.890 61.111 0.00 0.00 36.56 3.67
530 531 1.525077 GTGGACCTCACGCACCAAA 60.525 57.895 0.00 0.00 36.56 3.28
531 532 0.889186 GTGGACCTCACGCACCAAAT 60.889 55.000 0.00 0.00 36.56 2.32
532 533 0.179004 TGGACCTCACGCACCAAATT 60.179 50.000 0.00 0.00 0.00 1.82
533 534 1.072489 TGGACCTCACGCACCAAATTA 59.928 47.619 0.00 0.00 0.00 1.40
534 535 2.290641 TGGACCTCACGCACCAAATTAT 60.291 45.455 0.00 0.00 0.00 1.28
535 536 2.354821 GGACCTCACGCACCAAATTATC 59.645 50.000 0.00 0.00 0.00 1.75
536 537 3.270877 GACCTCACGCACCAAATTATCT 58.729 45.455 0.00 0.00 0.00 1.98
537 538 4.439057 GACCTCACGCACCAAATTATCTA 58.561 43.478 0.00 0.00 0.00 1.98
538 539 4.189231 ACCTCACGCACCAAATTATCTAC 58.811 43.478 0.00 0.00 0.00 2.59
539 540 3.560068 CCTCACGCACCAAATTATCTACC 59.440 47.826 0.00 0.00 0.00 3.18
540 541 3.191669 TCACGCACCAAATTATCTACCG 58.808 45.455 0.00 0.00 0.00 4.02
541 542 2.933906 CACGCACCAAATTATCTACCGT 59.066 45.455 0.00 0.00 0.00 4.83
542 543 2.933906 ACGCACCAAATTATCTACCGTG 59.066 45.455 0.00 0.00 0.00 4.94
543 544 2.286184 CGCACCAAATTATCTACCGTGC 60.286 50.000 0.00 0.00 41.23 5.34
544 545 2.680841 GCACCAAATTATCTACCGTGCA 59.319 45.455 0.00 0.00 43.46 4.57
545 546 3.127895 GCACCAAATTATCTACCGTGCAA 59.872 43.478 0.00 0.00 43.46 4.08
546 547 4.380023 GCACCAAATTATCTACCGTGCAAA 60.380 41.667 0.00 0.00 43.46 3.68
547 548 5.704888 CACCAAATTATCTACCGTGCAAAA 58.295 37.500 0.00 0.00 0.00 2.44
548 549 6.153067 CACCAAATTATCTACCGTGCAAAAA 58.847 36.000 0.00 0.00 0.00 1.94
549 550 6.307800 CACCAAATTATCTACCGTGCAAAAAG 59.692 38.462 0.00 0.00 0.00 2.27
550 551 6.207810 ACCAAATTATCTACCGTGCAAAAAGA 59.792 34.615 0.00 0.00 0.00 2.52
551 552 7.087639 CCAAATTATCTACCGTGCAAAAAGAA 58.912 34.615 0.00 0.00 0.00 2.52
552 553 7.596995 CCAAATTATCTACCGTGCAAAAAGAAA 59.403 33.333 0.00 0.00 0.00 2.52
553 554 8.973378 CAAATTATCTACCGTGCAAAAAGAAAA 58.027 29.630 0.00 0.00 0.00 2.29
554 555 9.705290 AAATTATCTACCGTGCAAAAAGAAAAT 57.295 25.926 0.00 0.00 0.00 1.82
555 556 9.705290 AATTATCTACCGTGCAAAAAGAAAATT 57.295 25.926 0.00 0.00 0.00 1.82
557 558 9.834628 TTATCTACCGTGCAAAAAGAAAATTAG 57.165 29.630 0.00 0.00 0.00 1.73
558 559 7.499321 TCTACCGTGCAAAAAGAAAATTAGA 57.501 32.000 0.00 0.00 0.00 2.10
559 560 7.932335 TCTACCGTGCAAAAAGAAAATTAGAA 58.068 30.769 0.00 0.00 0.00 2.10
560 561 8.573035 TCTACCGTGCAAAAAGAAAATTAGAAT 58.427 29.630 0.00 0.00 0.00 2.40
561 562 9.191995 CTACCGTGCAAAAAGAAAATTAGAATT 57.808 29.630 0.00 0.00 0.00 2.17
562 563 8.432110 ACCGTGCAAAAAGAAAATTAGAATTT 57.568 26.923 0.00 0.00 40.15 1.82
564 565 9.715123 CCGTGCAAAAAGAAAATTAGAATTTTT 57.285 25.926 12.87 3.12 45.70 1.94
601 602 8.606040 TTTGATTTCTTTTTCCTTTAGCATGG 57.394 30.769 0.00 0.00 0.00 3.66
602 603 6.700352 TGATTTCTTTTTCCTTTAGCATGGG 58.300 36.000 0.00 0.00 0.00 4.00
603 604 6.269769 TGATTTCTTTTTCCTTTAGCATGGGT 59.730 34.615 0.00 0.00 0.00 4.51
604 605 5.467035 TTCTTTTTCCTTTAGCATGGGTG 57.533 39.130 0.00 0.00 0.00 4.61
615 616 3.091318 CATGGGTGCAGATGAGTCC 57.909 57.895 0.00 0.00 0.00 3.85
616 617 0.253894 CATGGGTGCAGATGAGTCCA 59.746 55.000 0.00 0.00 0.00 4.02
617 618 0.545171 ATGGGTGCAGATGAGTCCAG 59.455 55.000 0.00 0.00 0.00 3.86
618 619 1.222936 GGGTGCAGATGAGTCCAGG 59.777 63.158 0.00 0.00 0.00 4.45
619 620 1.451028 GGTGCAGATGAGTCCAGGC 60.451 63.158 0.00 0.00 0.00 4.85
620 621 1.297689 GTGCAGATGAGTCCAGGCA 59.702 57.895 0.00 0.00 0.00 4.75
621 622 0.107312 GTGCAGATGAGTCCAGGCAT 60.107 55.000 0.00 0.00 32.87 4.40
622 623 0.179702 TGCAGATGAGTCCAGGCATC 59.820 55.000 0.00 0.00 40.85 3.91
623 624 0.879400 GCAGATGAGTCCAGGCATCG 60.879 60.000 0.00 0.00 44.23 3.84
624 625 0.749049 CAGATGAGTCCAGGCATCGA 59.251 55.000 0.00 0.00 44.23 3.59
625 626 1.137675 CAGATGAGTCCAGGCATCGAA 59.862 52.381 0.00 0.00 44.23 3.71
626 627 2.045524 AGATGAGTCCAGGCATCGAAT 58.954 47.619 0.00 0.00 44.23 3.34
627 628 2.437281 AGATGAGTCCAGGCATCGAATT 59.563 45.455 0.00 0.00 44.23 2.17
628 629 2.028420 TGAGTCCAGGCATCGAATTG 57.972 50.000 0.00 0.00 0.00 2.32
629 630 0.659957 GAGTCCAGGCATCGAATTGC 59.340 55.000 2.28 2.28 42.01 3.56
630 631 0.254178 AGTCCAGGCATCGAATTGCT 59.746 50.000 10.61 0.00 42.38 3.91
631 632 0.379669 GTCCAGGCATCGAATTGCTG 59.620 55.000 10.61 7.09 42.38 4.41
632 633 1.065273 CCAGGCATCGAATTGCTGC 59.935 57.895 10.61 5.22 42.38 5.25
633 634 1.381928 CCAGGCATCGAATTGCTGCT 61.382 55.000 10.61 0.00 42.38 4.24
634 635 0.029035 CAGGCATCGAATTGCTGCTC 59.971 55.000 10.61 0.63 42.38 4.26
635 636 0.107312 AGGCATCGAATTGCTGCTCT 60.107 50.000 10.61 2.76 42.38 4.09
636 637 0.737219 GGCATCGAATTGCTGCTCTT 59.263 50.000 10.61 0.00 42.38 2.85
637 638 1.133790 GGCATCGAATTGCTGCTCTTT 59.866 47.619 10.61 0.00 42.38 2.52
638 639 2.416431 GGCATCGAATTGCTGCTCTTTT 60.416 45.455 10.61 0.00 42.38 2.27
639 640 2.597305 GCATCGAATTGCTGCTCTTTTG 59.403 45.455 3.74 0.00 39.57 2.44
640 641 3.829948 CATCGAATTGCTGCTCTTTTGT 58.170 40.909 0.00 0.00 0.00 2.83
641 642 4.672542 GCATCGAATTGCTGCTCTTTTGTA 60.673 41.667 3.74 0.00 39.57 2.41
642 643 5.575957 CATCGAATTGCTGCTCTTTTGTAT 58.424 37.500 0.00 0.00 0.00 2.29
643 644 5.627499 TCGAATTGCTGCTCTTTTGTATT 57.373 34.783 0.00 0.00 0.00 1.89
644 645 6.735678 TCGAATTGCTGCTCTTTTGTATTA 57.264 33.333 0.00 0.00 0.00 0.98
645 646 6.542852 TCGAATTGCTGCTCTTTTGTATTAC 58.457 36.000 0.00 0.00 0.00 1.89
646 647 6.148645 TCGAATTGCTGCTCTTTTGTATTACA 59.851 34.615 0.00 0.00 0.00 2.41
647 648 6.467047 CGAATTGCTGCTCTTTTGTATTACAG 59.533 38.462 0.00 0.00 0.00 2.74
648 649 6.824305 ATTGCTGCTCTTTTGTATTACAGT 57.176 33.333 0.00 0.00 0.00 3.55
649 650 5.611796 TGCTGCTCTTTTGTATTACAGTG 57.388 39.130 0.00 0.00 0.00 3.66
650 651 5.063204 TGCTGCTCTTTTGTATTACAGTGT 58.937 37.500 0.00 0.00 0.00 3.55
651 652 5.530915 TGCTGCTCTTTTGTATTACAGTGTT 59.469 36.000 0.00 0.00 0.00 3.32
652 653 6.039270 TGCTGCTCTTTTGTATTACAGTGTTT 59.961 34.615 0.00 0.00 0.00 2.83
653 654 6.918022 GCTGCTCTTTTGTATTACAGTGTTTT 59.082 34.615 0.00 0.00 0.00 2.43
654 655 7.435192 GCTGCTCTTTTGTATTACAGTGTTTTT 59.565 33.333 0.00 0.00 0.00 1.94
655 656 8.850454 TGCTCTTTTGTATTACAGTGTTTTTC 57.150 30.769 0.00 0.00 0.00 2.29
656 657 8.682710 TGCTCTTTTGTATTACAGTGTTTTTCT 58.317 29.630 0.00 0.00 0.00 2.52
657 658 9.516314 GCTCTTTTGTATTACAGTGTTTTTCTT 57.484 29.630 0.00 0.00 0.00 2.52
708 709 2.157279 CAGCTTCAAAGAAGAGAGCACG 59.843 50.000 10.72 0.00 0.00 5.34
754 755 1.807814 ACCTTTGTCTCTCCACCACT 58.192 50.000 0.00 0.00 0.00 4.00
756 757 1.337260 CCTTTGTCTCTCCACCACTCG 60.337 57.143 0.00 0.00 0.00 4.18
759 760 3.062466 TCTCTCCACCACTCGCCG 61.062 66.667 0.00 0.00 0.00 6.46
925 941 1.807142 CTCTTTCGCCTCCAAAGAACC 59.193 52.381 0.00 0.00 38.98 3.62
958 978 0.462047 CGGGTAGTGACATTGGAGGC 60.462 60.000 0.00 0.00 0.00 4.70
963 983 4.385310 GGGTAGTGACATTGGAGGCTTAAT 60.385 45.833 0.00 0.00 0.00 1.40
1009 1029 3.131577 TGCAGATTTCATCATGCTTTCCC 59.868 43.478 0.00 0.00 35.71 3.97
1012 1032 4.401519 CAGATTTCATCATGCTTTCCCTGT 59.598 41.667 0.00 0.00 0.00 4.00
1127 1151 3.530260 CCATGGCATGCGGGGTTC 61.530 66.667 22.02 0.00 0.00 3.62
1176 1200 3.118038 GGTGGTGGTGCTTATCCTGATTA 60.118 47.826 0.00 0.00 0.00 1.75
1181 1205 5.070580 GGTGGTGCTTATCCTGATTAGTACT 59.929 44.000 12.04 0.00 34.82 2.73
1182 1206 5.986135 GTGGTGCTTATCCTGATTAGTACTG 59.014 44.000 5.39 0.00 34.82 2.74
1183 1207 5.661312 TGGTGCTTATCCTGATTAGTACTGT 59.339 40.000 5.39 0.00 34.82 3.55
1184 1208 5.986135 GGTGCTTATCCTGATTAGTACTGTG 59.014 44.000 5.39 0.00 34.82 3.66
1185 1209 5.463724 GTGCTTATCCTGATTAGTACTGTGC 59.536 44.000 5.39 0.00 32.76 4.57
1251 1275 0.034896 ATCCTCGCGTGTGGAAAACT 59.965 50.000 22.31 4.57 40.90 2.66
1272 1296 4.041740 TGATAAGAGAATCGGAACCGTG 57.958 45.455 12.93 0.00 42.67 4.94
1376 1400 5.252547 TGTAGATTTGTGCTTATTCCTGCA 58.747 37.500 0.00 0.00 36.79 4.41
1392 1416 3.194329 TCCTGCACTGAGACACTAGATTG 59.806 47.826 0.00 0.00 0.00 2.67
1418 1442 3.506096 CTCCATGCCTGCACTGCG 61.506 66.667 0.00 0.00 0.00 5.18
1449 1474 3.137533 GTTGTCTCTGCTTCAGCTTTCT 58.862 45.455 0.00 0.00 42.66 2.52
1450 1475 2.763933 TGTCTCTGCTTCAGCTTTCTG 58.236 47.619 0.00 0.00 42.66 3.02
1467 1492 5.703130 GCTTTCTGATGGAACTCTACAACTT 59.297 40.000 0.00 0.00 33.13 2.66
1471 1496 6.459066 TCTGATGGAACTCTACAACTTTCAG 58.541 40.000 0.00 0.00 0.00 3.02
1489 1514 4.350368 TCAGTTGCTCTGTGGTGATTTA 57.650 40.909 8.75 0.00 43.97 1.40
1549 1574 1.809133 TTGGGCCGACAGGGATTATA 58.191 50.000 0.00 0.00 38.47 0.98
1558 1583 4.997395 CCGACAGGGATTATATGTTCCTTG 59.003 45.833 13.21 13.21 42.95 3.61
1601 1626 0.035458 AGCCAGAGTTCCGTTTCAGG 59.965 55.000 0.00 0.00 0.00 3.86
1613 1640 1.262950 CGTTTCAGGATTTGCGTGACA 59.737 47.619 0.00 0.00 40.78 3.58
1620 1647 2.693074 AGGATTTGCGTGACACCTTTTT 59.307 40.909 0.00 0.00 0.00 1.94
1625 1652 2.920524 TGCGTGACACCTTTTTCCTTA 58.079 42.857 0.00 0.00 0.00 2.69
1805 1832 6.680810 TCAAATAGGAGTTCATGCTTGTTTG 58.319 36.000 0.00 1.51 36.23 2.93
1813 1841 4.398988 AGTTCATGCTTGTTTGTGTGAAGA 59.601 37.500 0.00 0.00 0.00 2.87
1913 1941 8.574309 AATATCTAGAATTGACTCCTCCCTTT 57.426 34.615 0.00 0.00 0.00 3.11
1924 1952 9.942526 ATTGACTCCTCCCTTTCAATAATATTT 57.057 29.630 0.00 0.00 37.01 1.40
1953 1983 8.929827 TCTATGTCAACAAAATAATTGCATGG 57.070 30.769 0.00 0.00 30.53 3.66
1957 1987 7.215789 TGTCAACAAAATAATTGCATGGTCTT 58.784 30.769 0.00 0.00 0.00 3.01
1958 1988 7.384660 TGTCAACAAAATAATTGCATGGTCTTC 59.615 33.333 0.00 0.00 0.00 2.87
1959 1989 7.599998 GTCAACAAAATAATTGCATGGTCTTCT 59.400 33.333 0.00 0.00 0.00 2.85
2196 2226 7.093992 TGTTTGAGGTAGGAAAACAAAACTTG 58.906 34.615 0.00 0.00 39.99 3.16
2325 2355 8.183104 TCTGCATACTTAGCTGACATAGTAAT 57.817 34.615 0.00 0.00 35.45 1.89
2327 2357 9.347934 CTGCATACTTAGCTGACATAGTAATAC 57.652 37.037 0.00 0.00 33.39 1.89
2346 2376 6.920569 AATACGCGAATCTGTATTCCTTTT 57.079 33.333 15.93 0.00 36.77 2.27
2347 2377 8.971321 GTAATACGCGAATCTGTATTCCTTTTA 58.029 33.333 15.93 0.00 40.64 1.52
2348 2378 8.603242 AATACGCGAATCTGTATTCCTTTTAT 57.397 30.769 15.93 0.00 36.77 1.40
2349 2379 6.920569 ACGCGAATCTGTATTCCTTTTATT 57.079 33.333 15.93 0.00 38.66 1.40
2350 2380 7.316544 ACGCGAATCTGTATTCCTTTTATTT 57.683 32.000 15.93 0.00 38.66 1.40
2779 2826 6.533730 GGAATTTGAAATTTTTCCCTGGAGT 58.466 36.000 4.46 0.00 36.36 3.85
3182 3246 8.099364 AGTTTGAGTTGGTTGTATTCTACATG 57.901 34.615 0.00 0.00 38.68 3.21
3183 3247 7.174946 AGTTTGAGTTGGTTGTATTCTACATGG 59.825 37.037 0.00 0.00 38.68 3.66
3221 3285 6.016213 TGGATGTGATTGTCTCAACATTTG 57.984 37.500 0.00 0.00 35.07 2.32
3238 3302 7.277539 TCAACATTTGCTTTTGTGGTAGAAAAG 59.722 33.333 6.78 6.78 41.44 2.27
3259 3323 4.923415 AGCTAGGCTTAAAGGAACATTGT 58.077 39.130 0.00 0.00 33.89 2.71
3261 3325 5.183904 AGCTAGGCTTAAAGGAACATTGTTG 59.816 40.000 6.80 0.00 33.89 3.33
3316 3380 6.704050 CCATTTTTAACCGTTTCATGTTTCCT 59.296 34.615 0.00 0.00 0.00 3.36
3322 3386 2.307049 CGTTTCATGTTTCCTTCGCAC 58.693 47.619 0.00 0.00 0.00 5.34
3324 3388 1.243902 TTCATGTTTCCTTCGCACCC 58.756 50.000 0.00 0.00 0.00 4.61
3472 3536 4.181309 TCCACCGCCAAAATTTGAATAC 57.819 40.909 7.37 0.00 0.00 1.89
3564 3628 4.532834 AGAGACTCTGGTAGAGATGAACC 58.467 47.826 12.45 0.00 45.07 3.62
3609 3673 7.771927 ATCCTGACAATGAATTGAAAGAAGT 57.228 32.000 9.94 0.00 40.14 3.01
3614 3678 5.535333 ACAATGAATTGAAAGAAGTGCCAG 58.465 37.500 9.94 0.00 40.14 4.85
3673 3737 4.320788 GCTTCTGGAGACCTTGAATTTGTG 60.321 45.833 0.00 0.00 0.00 3.33
3687 3751 6.304356 TGAATTTGTGTAGCTCAGAACTTG 57.696 37.500 0.00 0.00 0.00 3.16
3691 3755 5.929697 TTGTGTAGCTCAGAACTTGAATG 57.070 39.130 0.00 0.00 34.81 2.67
3729 3794 3.455910 TGCTTCATCATAGCAGGTAAGGT 59.544 43.478 0.00 0.00 43.30 3.50
3965 4034 2.220653 AGGTGTCCAACATGGGAATG 57.779 50.000 0.00 0.00 39.05 2.67
4036 4114 8.138712 GTGTAAGGTGTTTGACAATGGAATTTA 58.861 33.333 0.00 0.00 31.22 1.40
4045 4123 8.992073 GTTTGACAATGGAATTTAAAGAATGCT 58.008 29.630 0.00 0.00 31.22 3.79
4057 4135 9.979578 AATTTAAAGAATGCTGTGTTTGATGTA 57.020 25.926 0.00 0.00 0.00 2.29
4115 4193 5.321102 TGGTGGTTTACTACATCAGCATTT 58.679 37.500 0.00 0.00 32.05 2.32
4146 4224 4.768130 GCATATTGCTCATGCTTCATCT 57.232 40.909 9.56 0.00 44.35 2.90
4154 4232 3.304123 GCTCATGCTTCATCTCAATGCTC 60.304 47.826 0.00 0.00 36.03 4.26
4161 4239 5.889853 TGCTTCATCTCAATGCTCCTAATTT 59.110 36.000 0.00 0.00 32.58 1.82
4185 4263 9.936759 TTTGATTTACACATATCTGTAGACACA 57.063 29.630 0.00 0.00 33.14 3.72
4187 4265 9.936759 TGATTTACACATATCTGTAGACACAAA 57.063 29.630 0.00 0.00 33.22 2.83
4192 4270 6.531594 ACACATATCTGTAGACACAAATCGTG 59.468 38.462 0.00 0.00 42.05 4.35
4193 4271 6.751888 CACATATCTGTAGACACAAATCGTGA 59.248 38.462 0.00 0.00 40.14 4.35
4194 4272 7.436376 CACATATCTGTAGACACAAATCGTGAT 59.564 37.037 0.00 0.00 40.14 3.06
4239 4934 8.100164 TCATATTTTCGATGCCTATAACATGGA 58.900 33.333 0.00 0.00 31.45 3.41
4265 4960 3.096489 TCTGCATTTTTCAGTTGTGCC 57.904 42.857 0.00 0.00 35.03 5.01
4277 4972 2.787191 TTGTGCCGCAACTCTTTCA 58.213 47.368 0.00 0.00 31.07 2.69
4414 5110 6.720309 TGATGATAGTTCATTTCCAGGACAA 58.280 36.000 0.00 0.00 42.73 3.18
4480 5176 1.876322 GCATGAGGCAGGATACAGTC 58.124 55.000 0.00 0.00 43.97 3.51
4500 5196 4.949856 AGTCCTTGATGTCTTTGTTGTGTT 59.050 37.500 0.00 0.00 0.00 3.32
4514 5210 8.681806 TCTTTGTTGTGTTGTATTCATCAAGAA 58.318 29.630 0.00 0.00 41.28 2.52
4537 5233 1.817099 GCATTGGTGCGGGAGAGAG 60.817 63.158 0.00 0.00 42.28 3.20
4547 5243 1.747774 GGGAGAGAGGCAGCTCATC 59.252 63.158 9.57 4.89 37.37 2.92
4595 5291 2.758979 GTCCTGAGACGGATGGACTTAA 59.241 50.000 0.00 0.00 43.91 1.85
4609 5305 5.080969 TGGACTTAAAATCCTGACTACGG 57.919 43.478 6.91 0.00 37.13 4.02
4641 5337 4.582701 TGCTTTGGGTAATGTTCAACTG 57.417 40.909 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.869272 CCTTGTCGCGCCAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
1 2 3.869272 GCCTTGTCGCGCCAGATG 61.869 66.667 0.00 0.00 0.00 2.90
8 9 2.711311 CATCATGGCCTTGTCGCG 59.289 61.111 17.54 0.00 0.00 5.87
9 10 1.442526 CTCCATCATGGCCTTGTCGC 61.443 60.000 17.54 0.00 37.47 5.19
10 11 0.816825 CCTCCATCATGGCCTTGTCG 60.817 60.000 17.54 10.07 37.47 4.35
11 12 0.548031 TCCTCCATCATGGCCTTGTC 59.452 55.000 17.54 0.00 37.47 3.18
12 13 0.549950 CTCCTCCATCATGGCCTTGT 59.450 55.000 17.54 3.55 37.47 3.16
13 14 0.178998 CCTCCTCCATCATGGCCTTG 60.179 60.000 12.41 12.41 37.47 3.61
14 15 0.625683 ACCTCCTCCATCATGGCCTT 60.626 55.000 3.32 0.00 37.47 4.35
15 16 1.005289 ACCTCCTCCATCATGGCCT 59.995 57.895 3.32 0.00 37.47 5.19
16 17 1.150081 CACCTCCTCCATCATGGCC 59.850 63.158 0.00 0.00 37.47 5.36
17 18 1.527844 GCACCTCCTCCATCATGGC 60.528 63.158 0.00 0.00 37.47 4.40
18 19 1.150081 GGCACCTCCTCCATCATGG 59.850 63.158 0.00 0.00 39.43 3.66
19 20 4.894201 GGCACCTCCTCCATCATG 57.106 61.111 0.00 0.00 0.00 3.07
35 36 2.713967 CCTTCGCAATTGCCAGGGG 61.714 63.158 26.10 18.54 35.42 4.79
36 37 2.887360 CCTTCGCAATTGCCAGGG 59.113 61.111 26.10 20.12 35.42 4.45
37 38 2.182537 GCCTTCGCAATTGCCAGG 59.817 61.111 28.14 28.14 39.71 4.45
38 39 2.202518 CGCCTTCGCAATTGCCAG 60.203 61.111 24.24 18.92 37.91 4.85
39 40 2.983030 ACGCCTTCGCAATTGCCA 60.983 55.556 24.24 9.58 39.84 4.92
40 41 2.504681 CACGCCTTCGCAATTGCC 60.505 61.111 24.24 9.08 39.84 4.52
41 42 2.082366 CACACGCCTTCGCAATTGC 61.082 57.895 20.76 20.76 39.84 3.56
42 43 1.442520 CCACACGCCTTCGCAATTG 60.443 57.895 0.00 0.00 39.84 2.32
43 44 2.953821 CCACACGCCTTCGCAATT 59.046 55.556 0.00 0.00 39.84 2.32
44 45 3.737172 GCCACACGCCTTCGCAAT 61.737 61.111 0.00 0.00 39.84 3.56
72 73 2.811317 GACGAGGAGCTGCCGTTG 60.811 66.667 19.22 2.16 43.43 4.10
73 74 4.421479 CGACGAGGAGCTGCCGTT 62.421 66.667 19.22 6.94 43.43 4.44
76 77 4.803426 CCACGACGAGGAGCTGCC 62.803 72.222 5.25 0.00 0.00 4.85
77 78 3.691744 CTCCACGACGAGGAGCTGC 62.692 68.421 25.14 0.00 45.51 5.25
78 79 2.487428 CTCCACGACGAGGAGCTG 59.513 66.667 25.14 6.54 45.51 4.24
82 83 1.037579 ATGATGCTCCACGACGAGGA 61.038 55.000 13.55 13.55 34.46 3.71
83 84 0.873312 CATGATGCTCCACGACGAGG 60.873 60.000 4.78 4.78 0.00 4.63
84 85 0.101219 TCATGATGCTCCACGACGAG 59.899 55.000 0.00 0.00 0.00 4.18
85 86 0.179137 GTCATGATGCTCCACGACGA 60.179 55.000 0.00 0.00 0.00 4.20
86 87 1.474648 CGTCATGATGCTCCACGACG 61.475 60.000 11.54 11.54 40.04 5.12
87 88 1.148157 CCGTCATGATGCTCCACGAC 61.148 60.000 9.58 0.00 32.08 4.34
88 89 1.141665 CCGTCATGATGCTCCACGA 59.858 57.895 9.58 0.00 32.08 4.35
89 90 2.528743 GCCGTCATGATGCTCCACG 61.529 63.158 9.58 1.62 0.00 4.94
90 91 2.528743 CGCCGTCATGATGCTCCAC 61.529 63.158 9.58 0.00 0.00 4.02
91 92 2.202919 CGCCGTCATGATGCTCCA 60.203 61.111 9.58 0.00 0.00 3.86
92 93 2.969238 CCGCCGTCATGATGCTCC 60.969 66.667 9.58 0.00 0.00 4.70
93 94 1.953138 CTCCGCCGTCATGATGCTC 60.953 63.158 9.58 2.72 0.00 4.26
94 95 2.107750 CTCCGCCGTCATGATGCT 59.892 61.111 9.58 0.00 0.00 3.79
95 96 2.969238 CCTCCGCCGTCATGATGC 60.969 66.667 9.58 9.52 0.00 3.91
96 97 1.300465 CTCCTCCGCCGTCATGATG 60.300 63.158 8.03 8.03 0.00 3.07
97 98 1.455773 TCTCCTCCGCCGTCATGAT 60.456 57.895 0.00 0.00 0.00 2.45
98 99 2.044352 TCTCCTCCGCCGTCATGA 60.044 61.111 0.00 0.00 0.00 3.07
99 100 2.415010 CTCTCCTCCGCCGTCATG 59.585 66.667 0.00 0.00 0.00 3.07
100 101 2.835431 CCTCTCCTCCGCCGTCAT 60.835 66.667 0.00 0.00 0.00 3.06
106 107 3.462678 GACCACCCTCTCCTCCGC 61.463 72.222 0.00 0.00 0.00 5.54
107 108 1.192146 TTTGACCACCCTCTCCTCCG 61.192 60.000 0.00 0.00 0.00 4.63
108 109 1.064825 TTTTGACCACCCTCTCCTCC 58.935 55.000 0.00 0.00 0.00 4.30
109 110 2.553247 CCTTTTTGACCACCCTCTCCTC 60.553 54.545 0.00 0.00 0.00 3.71
110 111 1.425448 CCTTTTTGACCACCCTCTCCT 59.575 52.381 0.00 0.00 0.00 3.69
111 112 1.145119 ACCTTTTTGACCACCCTCTCC 59.855 52.381 0.00 0.00 0.00 3.71
112 113 2.658807 ACCTTTTTGACCACCCTCTC 57.341 50.000 0.00 0.00 0.00 3.20
113 114 2.375509 CCTACCTTTTTGACCACCCTCT 59.624 50.000 0.00 0.00 0.00 3.69
114 115 2.791655 CCTACCTTTTTGACCACCCTC 58.208 52.381 0.00 0.00 0.00 4.30
115 116 1.203013 GCCTACCTTTTTGACCACCCT 60.203 52.381 0.00 0.00 0.00 4.34
116 117 1.254026 GCCTACCTTTTTGACCACCC 58.746 55.000 0.00 0.00 0.00 4.61
117 118 0.879090 CGCCTACCTTTTTGACCACC 59.121 55.000 0.00 0.00 0.00 4.61
118 119 0.879090 CCGCCTACCTTTTTGACCAC 59.121 55.000 0.00 0.00 0.00 4.16
119 120 0.766131 TCCGCCTACCTTTTTGACCA 59.234 50.000 0.00 0.00 0.00 4.02
120 121 1.450025 CTCCGCCTACCTTTTTGACC 58.550 55.000 0.00 0.00 0.00 4.02
121 122 1.450025 CCTCCGCCTACCTTTTTGAC 58.550 55.000 0.00 0.00 0.00 3.18
122 123 0.326927 CCCTCCGCCTACCTTTTTGA 59.673 55.000 0.00 0.00 0.00 2.69
123 124 0.326927 TCCCTCCGCCTACCTTTTTG 59.673 55.000 0.00 0.00 0.00 2.44
124 125 0.618981 CTCCCTCCGCCTACCTTTTT 59.381 55.000 0.00 0.00 0.00 1.94
125 126 0.546988 ACTCCCTCCGCCTACCTTTT 60.547 55.000 0.00 0.00 0.00 2.27
126 127 0.337428 TACTCCCTCCGCCTACCTTT 59.663 55.000 0.00 0.00 0.00 3.11
127 128 0.106116 CTACTCCCTCCGCCTACCTT 60.106 60.000 0.00 0.00 0.00 3.50
128 129 1.537669 CTACTCCCTCCGCCTACCT 59.462 63.158 0.00 0.00 0.00 3.08
129 130 2.201708 GCTACTCCCTCCGCCTACC 61.202 68.421 0.00 0.00 0.00 3.18
130 131 1.455217 TGCTACTCCCTCCGCCTAC 60.455 63.158 0.00 0.00 0.00 3.18
131 132 1.455217 GTGCTACTCCCTCCGCCTA 60.455 63.158 0.00 0.00 0.00 3.93
132 133 2.760385 GTGCTACTCCCTCCGCCT 60.760 66.667 0.00 0.00 0.00 5.52
133 134 2.656069 TTGTGCTACTCCCTCCGCC 61.656 63.158 0.00 0.00 0.00 6.13
134 135 1.448013 GTTGTGCTACTCCCTCCGC 60.448 63.158 0.00 0.00 0.00 5.54
135 136 1.153823 CGTTGTGCTACTCCCTCCG 60.154 63.158 0.00 0.00 0.00 4.63
136 137 0.606604 TTCGTTGTGCTACTCCCTCC 59.393 55.000 0.00 0.00 0.00 4.30
137 138 1.672145 GGTTCGTTGTGCTACTCCCTC 60.672 57.143 0.00 0.00 0.00 4.30
138 139 0.320697 GGTTCGTTGTGCTACTCCCT 59.679 55.000 0.00 0.00 0.00 4.20
139 140 0.034337 TGGTTCGTTGTGCTACTCCC 59.966 55.000 0.00 0.00 0.00 4.30
140 141 1.145803 GTGGTTCGTTGTGCTACTCC 58.854 55.000 0.00 0.00 0.00 3.85
141 142 0.782384 CGTGGTTCGTTGTGCTACTC 59.218 55.000 0.00 0.00 34.52 2.59
142 143 1.219522 GCGTGGTTCGTTGTGCTACT 61.220 55.000 0.00 0.00 42.13 2.57
143 144 1.203313 GCGTGGTTCGTTGTGCTAC 59.797 57.895 0.00 0.00 42.13 3.58
144 145 1.957186 GGCGTGGTTCGTTGTGCTA 60.957 57.895 0.00 0.00 42.13 3.49
145 146 3.276846 GGCGTGGTTCGTTGTGCT 61.277 61.111 0.00 0.00 42.13 4.40
146 147 4.659874 CGGCGTGGTTCGTTGTGC 62.660 66.667 0.00 0.00 42.13 4.57
147 148 4.007940 CCGGCGTGGTTCGTTGTG 62.008 66.667 6.01 0.00 42.13 3.33
160 161 3.195698 CTAGAGCAAACGCCCGGC 61.196 66.667 0.00 0.00 0.00 6.13
161 162 0.672401 TTTCTAGAGCAAACGCCCGG 60.672 55.000 0.00 0.00 0.00 5.73
162 163 1.369625 ATTTCTAGAGCAAACGCCCG 58.630 50.000 0.00 0.00 0.00 6.13
163 164 3.190535 TCAAATTTCTAGAGCAAACGCCC 59.809 43.478 0.00 0.00 0.00 6.13
164 165 4.419522 TCAAATTTCTAGAGCAAACGCC 57.580 40.909 0.00 0.00 0.00 5.68
165 166 5.873732 AGATCAAATTTCTAGAGCAAACGC 58.126 37.500 0.00 0.00 0.00 4.84
166 167 7.963981 TGTAGATCAAATTTCTAGAGCAAACG 58.036 34.615 0.00 0.00 0.00 3.60
222 223 7.891498 TTTAAGTAGGAGCAAAGTCCTTTTT 57.109 32.000 0.00 0.00 45.39 1.94
223 224 7.340999 TGTTTTAAGTAGGAGCAAAGTCCTTTT 59.659 33.333 0.00 0.00 45.39 2.27
224 225 6.831868 TGTTTTAAGTAGGAGCAAAGTCCTTT 59.168 34.615 0.00 0.00 45.39 3.11
225 226 6.362248 TGTTTTAAGTAGGAGCAAAGTCCTT 58.638 36.000 0.00 0.00 45.39 3.36
227 228 6.628919 TTGTTTTAAGTAGGAGCAAAGTCC 57.371 37.500 0.00 0.00 36.79 3.85
228 229 9.000486 ACTATTGTTTTAAGTAGGAGCAAAGTC 58.000 33.333 0.00 0.00 0.00 3.01
229 230 8.919777 ACTATTGTTTTAAGTAGGAGCAAAGT 57.080 30.769 0.00 0.00 0.00 2.66
230 231 9.612620 CAACTATTGTTTTAAGTAGGAGCAAAG 57.387 33.333 0.00 0.00 33.52 2.77
231 232 9.127277 ACAACTATTGTTTTAAGTAGGAGCAAA 57.873 29.630 0.00 0.00 42.22 3.68
232 233 8.685838 ACAACTATTGTTTTAAGTAGGAGCAA 57.314 30.769 0.00 0.00 42.22 3.91
233 234 9.781633 TTACAACTATTGTTTTAAGTAGGAGCA 57.218 29.630 0.00 0.00 42.22 4.26
247 248 8.395633 GCTCGGAAATACAATTACAACTATTGT 58.604 33.333 0.00 0.00 45.45 2.71
248 249 8.612619 AGCTCGGAAATACAATTACAACTATTG 58.387 33.333 0.00 0.00 38.61 1.90
249 250 8.732746 AGCTCGGAAATACAATTACAACTATT 57.267 30.769 0.00 0.00 0.00 1.73
250 251 8.732746 AAGCTCGGAAATACAATTACAACTAT 57.267 30.769 0.00 0.00 0.00 2.12
251 252 9.309516 CTAAGCTCGGAAATACAATTACAACTA 57.690 33.333 0.00 0.00 0.00 2.24
252 253 7.280205 CCTAAGCTCGGAAATACAATTACAACT 59.720 37.037 0.00 0.00 0.00 3.16
253 254 7.065443 ACCTAAGCTCGGAAATACAATTACAAC 59.935 37.037 8.86 0.00 0.00 3.32
254 255 7.107542 ACCTAAGCTCGGAAATACAATTACAA 58.892 34.615 8.86 0.00 0.00 2.41
255 256 6.646267 ACCTAAGCTCGGAAATACAATTACA 58.354 36.000 8.86 0.00 0.00 2.41
256 257 7.549615 AACCTAAGCTCGGAAATACAATTAC 57.450 36.000 8.86 0.00 0.00 1.89
257 258 9.841295 ATAAACCTAAGCTCGGAAATACAATTA 57.159 29.630 8.86 0.00 0.00 1.40
258 259 8.747538 ATAAACCTAAGCTCGGAAATACAATT 57.252 30.769 8.86 0.00 0.00 2.32
259 260 8.747538 AATAAACCTAAGCTCGGAAATACAAT 57.252 30.769 8.86 0.00 0.00 2.71
260 261 8.455682 CAAATAAACCTAAGCTCGGAAATACAA 58.544 33.333 8.86 0.00 0.00 2.41
261 262 7.414762 GCAAATAAACCTAAGCTCGGAAATACA 60.415 37.037 8.86 0.00 0.00 2.29
262 263 6.910972 GCAAATAAACCTAAGCTCGGAAATAC 59.089 38.462 8.86 0.00 0.00 1.89
263 264 6.600032 TGCAAATAAACCTAAGCTCGGAAATA 59.400 34.615 8.86 0.46 0.00 1.40
264 265 5.417580 TGCAAATAAACCTAAGCTCGGAAAT 59.582 36.000 8.86 0.00 0.00 2.17
265 266 4.762765 TGCAAATAAACCTAAGCTCGGAAA 59.237 37.500 8.86 0.00 0.00 3.13
266 267 4.155280 GTGCAAATAAACCTAAGCTCGGAA 59.845 41.667 8.86 0.00 0.00 4.30
267 268 3.687698 GTGCAAATAAACCTAAGCTCGGA 59.312 43.478 8.86 0.00 0.00 4.55
268 269 3.181500 GGTGCAAATAAACCTAAGCTCGG 60.181 47.826 0.00 0.00 33.40 4.63
269 270 3.181500 GGGTGCAAATAAACCTAAGCTCG 60.181 47.826 0.00 0.00 36.64 5.03
270 271 3.181500 CGGGTGCAAATAAACCTAAGCTC 60.181 47.826 0.00 0.00 36.64 4.09
271 272 2.752903 CGGGTGCAAATAAACCTAAGCT 59.247 45.455 0.00 0.00 36.64 3.74
272 273 2.159296 CCGGGTGCAAATAAACCTAAGC 60.159 50.000 0.00 0.00 36.64 3.09
273 274 3.086282 ACCGGGTGCAAATAAACCTAAG 58.914 45.455 6.32 0.00 36.64 2.18
274 275 3.083293 GACCGGGTGCAAATAAACCTAA 58.917 45.455 3.30 0.00 36.64 2.69
275 276 2.040012 TGACCGGGTGCAAATAAACCTA 59.960 45.455 3.30 0.00 36.64 3.08
276 277 1.202952 TGACCGGGTGCAAATAAACCT 60.203 47.619 3.30 0.00 36.64 3.50
277 278 1.249407 TGACCGGGTGCAAATAAACC 58.751 50.000 3.30 0.00 35.59 3.27
278 279 3.372660 TTTGACCGGGTGCAAATAAAC 57.627 42.857 3.30 0.00 0.00 2.01
279 280 4.402056 TTTTTGACCGGGTGCAAATAAA 57.598 36.364 18.76 12.02 34.36 1.40
330 331 7.330700 CACCAAATTATCTACCGTGCAATTTTT 59.669 33.333 0.00 0.00 28.88 1.94
331 332 6.811170 CACCAAATTATCTACCGTGCAATTTT 59.189 34.615 0.00 0.00 28.88 1.82
332 333 6.329496 CACCAAATTATCTACCGTGCAATTT 58.671 36.000 0.00 0.00 30.89 1.82
333 334 5.678616 GCACCAAATTATCTACCGTGCAATT 60.679 40.000 0.00 0.00 43.46 2.32
334 335 4.202010 GCACCAAATTATCTACCGTGCAAT 60.202 41.667 0.00 0.00 43.46 3.56
335 336 3.127895 GCACCAAATTATCTACCGTGCAA 59.872 43.478 0.00 0.00 43.46 4.08
336 337 2.680841 GCACCAAATTATCTACCGTGCA 59.319 45.455 0.00 0.00 43.46 4.57
337 338 2.680841 TGCACCAAATTATCTACCGTGC 59.319 45.455 0.00 0.00 44.08 5.34
338 339 4.574421 TCATGCACCAAATTATCTACCGTG 59.426 41.667 0.00 0.00 0.00 4.94
339 340 4.776349 TCATGCACCAAATTATCTACCGT 58.224 39.130 0.00 0.00 0.00 4.83
340 341 5.296780 ACTTCATGCACCAAATTATCTACCG 59.703 40.000 0.00 0.00 0.00 4.02
341 342 6.498304 CACTTCATGCACCAAATTATCTACC 58.502 40.000 0.00 0.00 0.00 3.18
357 358 2.642139 AATTTGGAGCGCACTTCATG 57.358 45.000 11.47 0.00 29.02 3.07
358 359 2.557924 TGAAATTTGGAGCGCACTTCAT 59.442 40.909 11.47 0.00 29.02 2.57
359 360 1.952990 TGAAATTTGGAGCGCACTTCA 59.047 42.857 11.47 6.25 0.00 3.02
360 361 2.226437 TCTGAAATTTGGAGCGCACTTC 59.774 45.455 11.47 3.34 0.00 3.01
361 362 2.229792 TCTGAAATTTGGAGCGCACTT 58.770 42.857 11.47 0.00 0.00 3.16
362 363 1.896220 TCTGAAATTTGGAGCGCACT 58.104 45.000 11.47 0.00 0.00 4.40
363 364 2.421424 AGATCTGAAATTTGGAGCGCAC 59.579 45.455 11.47 1.97 0.00 5.34
364 365 2.715046 AGATCTGAAATTTGGAGCGCA 58.285 42.857 11.47 0.00 0.00 6.09
365 366 3.772060 AAGATCTGAAATTTGGAGCGC 57.228 42.857 0.00 0.00 0.00 5.92
366 367 7.594758 TGTTTAAAAGATCTGAAATTTGGAGCG 59.405 33.333 0.00 0.00 0.00 5.03
367 368 8.816640 TGTTTAAAAGATCTGAAATTTGGAGC 57.183 30.769 0.00 0.00 0.00 4.70
388 389 9.709495 TTTTTGCTCAAAGCTATTCATATGTTT 57.291 25.926 1.90 0.00 42.97 2.83
423 424 9.909644 CTGTAAAGAAGCTTACTGTTCTAAGTA 57.090 33.333 0.00 0.00 32.56 2.24
424 425 8.639761 TCTGTAAAGAAGCTTACTGTTCTAAGT 58.360 33.333 0.00 0.00 34.26 2.24
425 426 8.917655 GTCTGTAAAGAAGCTTACTGTTCTAAG 58.082 37.037 0.00 0.00 34.26 2.18
426 427 7.871463 GGTCTGTAAAGAAGCTTACTGTTCTAA 59.129 37.037 0.00 0.00 34.26 2.10
427 428 7.376615 GGTCTGTAAAGAAGCTTACTGTTCTA 58.623 38.462 0.00 0.00 34.26 2.10
428 429 6.224584 GGTCTGTAAAGAAGCTTACTGTTCT 58.775 40.000 0.00 0.00 34.26 3.01
429 430 5.408909 GGGTCTGTAAAGAAGCTTACTGTTC 59.591 44.000 0.00 0.00 34.26 3.18
430 431 5.306394 GGGTCTGTAAAGAAGCTTACTGTT 58.694 41.667 0.00 0.00 34.26 3.16
431 432 4.262938 GGGGTCTGTAAAGAAGCTTACTGT 60.263 45.833 0.00 0.00 34.26 3.55
432 433 4.254492 GGGGTCTGTAAAGAAGCTTACTG 58.746 47.826 0.00 0.00 33.67 2.74
433 434 3.263681 GGGGGTCTGTAAAGAAGCTTACT 59.736 47.826 0.00 0.00 33.67 2.24
434 435 3.008704 TGGGGGTCTGTAAAGAAGCTTAC 59.991 47.826 0.00 0.00 33.22 2.34
435 436 3.253220 TGGGGGTCTGTAAAGAAGCTTA 58.747 45.455 0.00 0.00 0.00 3.09
436 437 2.062636 TGGGGGTCTGTAAAGAAGCTT 58.937 47.619 0.00 0.00 0.00 3.74
437 438 1.742308 TGGGGGTCTGTAAAGAAGCT 58.258 50.000 0.00 0.00 0.00 3.74
438 439 2.557056 GTTTGGGGGTCTGTAAAGAAGC 59.443 50.000 0.00 0.00 0.00 3.86
439 440 4.100279 AGTTTGGGGGTCTGTAAAGAAG 57.900 45.455 0.00 0.00 0.00 2.85
440 441 4.211920 CAAGTTTGGGGGTCTGTAAAGAA 58.788 43.478 0.00 0.00 0.00 2.52
441 442 3.203487 ACAAGTTTGGGGGTCTGTAAAGA 59.797 43.478 0.00 0.00 0.00 2.52
442 443 3.562182 ACAAGTTTGGGGGTCTGTAAAG 58.438 45.455 0.00 0.00 0.00 1.85
443 444 3.558033 GACAAGTTTGGGGGTCTGTAAA 58.442 45.455 0.00 0.00 0.00 2.01
444 445 2.158579 GGACAAGTTTGGGGGTCTGTAA 60.159 50.000 0.00 0.00 0.00 2.41
445 446 1.422402 GGACAAGTTTGGGGGTCTGTA 59.578 52.381 0.00 0.00 0.00 2.74
446 447 0.185175 GGACAAGTTTGGGGGTCTGT 59.815 55.000 0.00 0.00 0.00 3.41
447 448 0.184933 TGGACAAGTTTGGGGGTCTG 59.815 55.000 0.00 0.00 0.00 3.51
448 449 1.158007 ATGGACAAGTTTGGGGGTCT 58.842 50.000 0.00 0.00 0.00 3.85
449 450 2.009681 AATGGACAAGTTTGGGGGTC 57.990 50.000 0.00 0.00 0.00 4.46
450 451 2.437651 CAAAATGGACAAGTTTGGGGGT 59.562 45.455 0.00 0.00 0.00 4.95
451 452 2.810032 GCAAAATGGACAAGTTTGGGGG 60.810 50.000 5.00 0.00 33.72 5.40
452 453 2.493035 GCAAAATGGACAAGTTTGGGG 58.507 47.619 5.00 0.00 33.72 4.96
453 454 2.493035 GGCAAAATGGACAAGTTTGGG 58.507 47.619 5.00 0.00 33.72 4.12
454 455 2.134346 CGGCAAAATGGACAAGTTTGG 58.866 47.619 5.00 0.00 33.72 3.28
455 456 3.052036 CTCGGCAAAATGGACAAGTTTG 58.948 45.455 0.00 0.00 35.74 2.93
456 457 2.955660 TCTCGGCAAAATGGACAAGTTT 59.044 40.909 0.00 0.00 0.00 2.66
457 458 2.554032 CTCTCGGCAAAATGGACAAGTT 59.446 45.455 0.00 0.00 0.00 2.66
458 459 2.154462 CTCTCGGCAAAATGGACAAGT 58.846 47.619 0.00 0.00 0.00 3.16
459 460 2.154462 ACTCTCGGCAAAATGGACAAG 58.846 47.619 0.00 0.00 0.00 3.16
460 461 2.270352 ACTCTCGGCAAAATGGACAA 57.730 45.000 0.00 0.00 0.00 3.18
461 462 2.270352 AACTCTCGGCAAAATGGACA 57.730 45.000 0.00 0.00 0.00 4.02
462 463 3.335579 AGTAACTCTCGGCAAAATGGAC 58.664 45.455 0.00 0.00 0.00 4.02
463 464 3.007506 TGAGTAACTCTCGGCAAAATGGA 59.992 43.478 0.00 0.00 45.46 3.41
464 465 3.334691 TGAGTAACTCTCGGCAAAATGG 58.665 45.455 0.00 0.00 45.46 3.16
465 466 5.356882 TTTGAGTAACTCTCGGCAAAATG 57.643 39.130 0.00 0.00 45.46 2.32
466 467 5.473504 ACATTTGAGTAACTCTCGGCAAAAT 59.526 36.000 0.00 0.00 45.46 1.82
467 468 4.819630 ACATTTGAGTAACTCTCGGCAAAA 59.180 37.500 0.00 0.00 45.46 2.44
468 469 4.385825 ACATTTGAGTAACTCTCGGCAAA 58.614 39.130 0.00 0.00 45.46 3.68
469 470 4.002906 ACATTTGAGTAACTCTCGGCAA 57.997 40.909 0.00 0.00 45.46 4.52
470 471 3.678056 ACATTTGAGTAACTCTCGGCA 57.322 42.857 0.00 0.00 45.46 5.69
471 472 3.994392 TGAACATTTGAGTAACTCTCGGC 59.006 43.478 0.00 0.00 45.46 5.54
472 473 6.539649 TTTGAACATTTGAGTAACTCTCGG 57.460 37.500 0.00 0.00 45.46 4.63
473 474 7.851508 TCTTTTGAACATTTGAGTAACTCTCG 58.148 34.615 0.00 0.00 45.46 4.04
474 475 9.604626 CATCTTTTGAACATTTGAGTAACTCTC 57.395 33.333 0.00 0.00 43.03 3.20
475 476 9.125026 ACATCTTTTGAACATTTGAGTAACTCT 57.875 29.630 0.00 0.00 0.00 3.24
488 489 9.311916 CACTCCAAATTTTACATCTTTTGAACA 57.688 29.630 0.00 0.00 32.17 3.18
489 490 8.764287 CCACTCCAAATTTTACATCTTTTGAAC 58.236 33.333 0.00 0.00 32.17 3.18
490 491 8.700051 TCCACTCCAAATTTTACATCTTTTGAA 58.300 29.630 0.00 0.00 32.17 2.69
491 492 8.141268 GTCCACTCCAAATTTTACATCTTTTGA 58.859 33.333 0.00 0.00 32.17 2.69
492 493 7.384932 GGTCCACTCCAAATTTTACATCTTTTG 59.615 37.037 0.00 0.00 0.00 2.44
493 494 7.290014 AGGTCCACTCCAAATTTTACATCTTTT 59.710 33.333 0.00 0.00 0.00 2.27
494 495 6.782494 AGGTCCACTCCAAATTTTACATCTTT 59.218 34.615 0.00 0.00 0.00 2.52
495 496 6.314917 AGGTCCACTCCAAATTTTACATCTT 58.685 36.000 0.00 0.00 0.00 2.40
496 497 5.892348 AGGTCCACTCCAAATTTTACATCT 58.108 37.500 0.00 0.00 0.00 2.90
497 498 5.710099 TGAGGTCCACTCCAAATTTTACATC 59.290 40.000 0.00 0.00 46.01 3.06
498 499 5.476945 GTGAGGTCCACTCCAAATTTTACAT 59.523 40.000 0.00 0.00 46.01 2.29
499 500 4.825085 GTGAGGTCCACTCCAAATTTTACA 59.175 41.667 0.00 0.00 46.01 2.41
500 501 4.083484 CGTGAGGTCCACTCCAAATTTTAC 60.083 45.833 0.00 0.00 46.01 2.01
501 502 4.069304 CGTGAGGTCCACTCCAAATTTTA 58.931 43.478 0.00 0.00 46.01 1.52
502 503 2.884639 CGTGAGGTCCACTCCAAATTTT 59.115 45.455 0.00 0.00 46.01 1.82
503 504 2.504367 CGTGAGGTCCACTCCAAATTT 58.496 47.619 0.00 0.00 46.01 1.82
504 505 1.882352 GCGTGAGGTCCACTCCAAATT 60.882 52.381 0.00 0.00 46.01 1.82
505 506 0.321653 GCGTGAGGTCCACTCCAAAT 60.322 55.000 0.00 0.00 46.01 2.32
506 507 1.070786 GCGTGAGGTCCACTCCAAA 59.929 57.895 0.00 0.00 46.01 3.28
507 508 2.137528 TGCGTGAGGTCCACTCCAA 61.138 57.895 0.00 0.00 46.01 3.53
508 509 2.523168 TGCGTGAGGTCCACTCCA 60.523 61.111 0.00 0.00 46.01 3.86
509 510 2.048127 GTGCGTGAGGTCCACTCC 60.048 66.667 0.00 0.00 46.01 3.85
510 511 2.048127 GGTGCGTGAGGTCCACTC 60.048 66.667 0.00 0.00 46.78 3.51
511 512 1.978455 TTTGGTGCGTGAGGTCCACT 61.978 55.000 0.00 0.00 43.53 4.00
512 513 0.889186 ATTTGGTGCGTGAGGTCCAC 60.889 55.000 0.00 0.00 42.30 4.02
513 514 0.179004 AATTTGGTGCGTGAGGTCCA 60.179 50.000 0.00 0.00 0.00 4.02
514 515 1.816074 TAATTTGGTGCGTGAGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
515 516 3.270877 AGATAATTTGGTGCGTGAGGTC 58.729 45.455 0.00 0.00 0.00 3.85
516 517 3.350219 AGATAATTTGGTGCGTGAGGT 57.650 42.857 0.00 0.00 0.00 3.85
517 518 3.560068 GGTAGATAATTTGGTGCGTGAGG 59.440 47.826 0.00 0.00 0.00 3.86
518 519 3.245284 CGGTAGATAATTTGGTGCGTGAG 59.755 47.826 0.00 0.00 0.00 3.51
519 520 3.191669 CGGTAGATAATTTGGTGCGTGA 58.808 45.455 0.00 0.00 0.00 4.35
520 521 2.933906 ACGGTAGATAATTTGGTGCGTG 59.066 45.455 0.00 0.00 0.00 5.34
521 522 2.933906 CACGGTAGATAATTTGGTGCGT 59.066 45.455 0.00 0.00 0.00 5.24
522 523 2.286184 GCACGGTAGATAATTTGGTGCG 60.286 50.000 0.00 0.00 39.68 5.34
523 524 2.680841 TGCACGGTAGATAATTTGGTGC 59.319 45.455 6.32 6.32 46.83 5.01
524 525 4.955925 TTGCACGGTAGATAATTTGGTG 57.044 40.909 0.00 0.00 0.00 4.17
525 526 5.968528 TTTTGCACGGTAGATAATTTGGT 57.031 34.783 0.00 0.00 0.00 3.67
526 527 6.616947 TCTTTTTGCACGGTAGATAATTTGG 58.383 36.000 0.00 0.00 0.00 3.28
527 528 8.514136 TTTCTTTTTGCACGGTAGATAATTTG 57.486 30.769 0.00 0.00 0.00 2.32
528 529 9.705290 ATTTTCTTTTTGCACGGTAGATAATTT 57.295 25.926 0.00 0.00 0.00 1.82
529 530 9.705290 AATTTTCTTTTTGCACGGTAGATAATT 57.295 25.926 0.00 0.00 0.00 1.40
531 532 9.834628 CTAATTTTCTTTTTGCACGGTAGATAA 57.165 29.630 0.00 0.00 0.00 1.75
532 533 9.221933 TCTAATTTTCTTTTTGCACGGTAGATA 57.778 29.630 0.00 0.00 0.00 1.98
533 534 8.106247 TCTAATTTTCTTTTTGCACGGTAGAT 57.894 30.769 0.00 0.00 0.00 1.98
534 535 7.499321 TCTAATTTTCTTTTTGCACGGTAGA 57.501 32.000 0.00 0.00 0.00 2.59
535 536 8.742554 ATTCTAATTTTCTTTTTGCACGGTAG 57.257 30.769 0.00 0.00 0.00 3.18
536 537 9.535878 AAATTCTAATTTTCTTTTTGCACGGTA 57.464 25.926 0.00 0.00 35.16 4.02
537 538 8.432110 AAATTCTAATTTTCTTTTTGCACGGT 57.568 26.923 0.00 0.00 35.16 4.83
538 539 9.715123 AAAAATTCTAATTTTCTTTTTGCACGG 57.285 25.926 12.48 0.00 45.16 4.94
575 576 9.054922 CCATGCTAAAGGAAAAAGAAATCAAAA 57.945 29.630 0.00 0.00 0.00 2.44
576 577 7.661027 CCCATGCTAAAGGAAAAAGAAATCAAA 59.339 33.333 0.00 0.00 0.00 2.69
577 578 7.160726 CCCATGCTAAAGGAAAAAGAAATCAA 58.839 34.615 0.00 0.00 0.00 2.57
578 579 6.269769 ACCCATGCTAAAGGAAAAAGAAATCA 59.730 34.615 0.00 0.00 0.00 2.57
579 580 6.591448 CACCCATGCTAAAGGAAAAAGAAATC 59.409 38.462 0.00 0.00 0.00 2.17
580 581 6.466812 CACCCATGCTAAAGGAAAAAGAAAT 58.533 36.000 0.00 0.00 0.00 2.17
581 582 5.852827 CACCCATGCTAAAGGAAAAAGAAA 58.147 37.500 0.00 0.00 0.00 2.52
582 583 5.467035 CACCCATGCTAAAGGAAAAAGAA 57.533 39.130 0.00 0.00 0.00 2.52
597 598 0.253894 TGGACTCATCTGCACCCATG 59.746 55.000 0.00 0.00 0.00 3.66
598 599 0.545171 CTGGACTCATCTGCACCCAT 59.455 55.000 0.00 0.00 0.00 4.00
599 600 1.556373 CCTGGACTCATCTGCACCCA 61.556 60.000 0.00 0.00 0.00 4.51
600 601 1.222936 CCTGGACTCATCTGCACCC 59.777 63.158 0.00 0.00 0.00 4.61
601 602 1.451028 GCCTGGACTCATCTGCACC 60.451 63.158 0.00 0.00 0.00 5.01
602 603 0.107312 ATGCCTGGACTCATCTGCAC 60.107 55.000 0.00 0.00 30.45 4.57
603 604 0.179702 GATGCCTGGACTCATCTGCA 59.820 55.000 0.00 0.00 36.91 4.41
604 605 0.879400 CGATGCCTGGACTCATCTGC 60.879 60.000 0.00 0.00 37.52 4.26
605 606 0.749049 TCGATGCCTGGACTCATCTG 59.251 55.000 0.00 0.00 37.52 2.90
606 607 1.489481 TTCGATGCCTGGACTCATCT 58.511 50.000 0.00 0.00 37.52 2.90
607 608 2.540265 ATTCGATGCCTGGACTCATC 57.460 50.000 0.00 0.00 36.60 2.92
608 609 2.569059 CAATTCGATGCCTGGACTCAT 58.431 47.619 0.00 0.00 0.00 2.90
609 610 2.013563 GCAATTCGATGCCTGGACTCA 61.014 52.381 0.00 0.00 40.49 3.41
610 611 0.659957 GCAATTCGATGCCTGGACTC 59.340 55.000 0.00 0.00 40.49 3.36
611 612 2.785868 GCAATTCGATGCCTGGACT 58.214 52.632 0.00 0.00 40.49 3.85
619 620 3.829948 ACAAAAGAGCAGCAATTCGATG 58.170 40.909 0.00 0.00 0.00 3.84
620 621 5.824904 ATACAAAAGAGCAGCAATTCGAT 57.175 34.783 0.00 0.00 0.00 3.59
621 622 5.627499 AATACAAAAGAGCAGCAATTCGA 57.373 34.783 0.00 0.00 0.00 3.71
622 623 6.314018 TGTAATACAAAAGAGCAGCAATTCG 58.686 36.000 0.00 0.00 0.00 3.34
623 624 7.272084 CACTGTAATACAAAAGAGCAGCAATTC 59.728 37.037 0.00 0.00 0.00 2.17
624 625 7.086376 CACTGTAATACAAAAGAGCAGCAATT 58.914 34.615 0.00 0.00 0.00 2.32
625 626 6.207417 ACACTGTAATACAAAAGAGCAGCAAT 59.793 34.615 0.00 0.00 0.00 3.56
626 627 5.530915 ACACTGTAATACAAAAGAGCAGCAA 59.469 36.000 0.00 0.00 0.00 3.91
627 628 5.063204 ACACTGTAATACAAAAGAGCAGCA 58.937 37.500 0.00 0.00 0.00 4.41
628 629 5.613358 ACACTGTAATACAAAAGAGCAGC 57.387 39.130 0.00 0.00 0.00 5.25
629 630 8.856490 AAAAACACTGTAATACAAAAGAGCAG 57.144 30.769 0.00 0.00 0.00 4.24
630 631 8.682710 AGAAAAACACTGTAATACAAAAGAGCA 58.317 29.630 0.00 0.00 0.00 4.26
631 632 9.516314 AAGAAAAACACTGTAATACAAAAGAGC 57.484 29.630 0.00 0.00 0.00 4.09
654 655 9.715121 ACTGACCGTACAAAATTATAGAAAAGA 57.285 29.630 0.00 0.00 0.00 2.52
657 658 9.491675 TGAACTGACCGTACAAAATTATAGAAA 57.508 29.630 0.00 0.00 0.00 2.52
658 659 9.146984 CTGAACTGACCGTACAAAATTATAGAA 57.853 33.333 0.00 0.00 0.00 2.10
659 660 8.308931 ACTGAACTGACCGTACAAAATTATAGA 58.691 33.333 0.00 0.00 0.00 1.98
660 661 8.475331 ACTGAACTGACCGTACAAAATTATAG 57.525 34.615 0.00 0.00 0.00 1.31
661 662 8.836268 AACTGAACTGACCGTACAAAATTATA 57.164 30.769 0.00 0.00 0.00 0.98
662 663 7.442969 TGAACTGAACTGACCGTACAAAATTAT 59.557 33.333 0.00 0.00 0.00 1.28
663 664 6.762187 TGAACTGAACTGACCGTACAAAATTA 59.238 34.615 0.00 0.00 0.00 1.40
664 665 5.587043 TGAACTGAACTGACCGTACAAAATT 59.413 36.000 0.00 0.00 0.00 1.82
665 666 5.120399 TGAACTGAACTGACCGTACAAAAT 58.880 37.500 0.00 0.00 0.00 1.82
670 671 2.059541 GCTGAACTGAACTGACCGTAC 58.940 52.381 0.00 0.00 0.00 3.67
682 683 4.083908 GCTCTCTTCTTTGAAGCTGAACTG 60.084 45.833 2.71 0.00 0.00 3.16
722 723 5.299531 AGAGACAAAGGTAAGTTTTCCAAGC 59.700 40.000 0.78 0.00 0.00 4.01
767 768 3.898969 GAGGGTCCTCTTCCTCGTA 57.101 57.895 9.64 0.00 39.95 3.43
925 941 4.570663 CCCGCCTACTTCTCCGCG 62.571 72.222 0.00 0.00 44.08 6.46
958 978 3.646534 AGCAGGAATCCCCCAAATTAAG 58.353 45.455 0.00 0.00 34.66 1.85
963 983 0.041090 GGAAGCAGGAATCCCCCAAA 59.959 55.000 0.00 0.00 34.66 3.28
1041 1061 0.099082 GAACGACGGCTCTCTCGAAT 59.901 55.000 0.00 0.00 33.96 3.34
1065 1085 0.164002 GAGAGTTGAACTTTCGCGGC 59.836 55.000 6.13 0.00 0.00 6.53
1127 1151 3.119990 ACAACAACACCAAGTTCTGAACG 60.120 43.478 14.35 3.90 38.74 3.95
1138 1162 0.891373 CACCACCAACAACAACACCA 59.109 50.000 0.00 0.00 0.00 4.17
1139 1163 0.174617 CCACCACCAACAACAACACC 59.825 55.000 0.00 0.00 0.00 4.16
1140 1164 0.892063 ACCACCACCAACAACAACAC 59.108 50.000 0.00 0.00 0.00 3.32
1141 1165 0.891373 CACCACCACCAACAACAACA 59.109 50.000 0.00 0.00 0.00 3.33
1142 1166 0.174617 CCACCACCACCAACAACAAC 59.825 55.000 0.00 0.00 0.00 3.32
1143 1167 0.251832 ACCACCACCACCAACAACAA 60.252 50.000 0.00 0.00 0.00 2.83
1144 1168 0.967887 CACCACCACCACCAACAACA 60.968 55.000 0.00 0.00 0.00 3.33
1145 1169 1.813192 CACCACCACCACCAACAAC 59.187 57.895 0.00 0.00 0.00 3.32
1176 1200 1.967319 CCACAAGGTTGCACAGTACT 58.033 50.000 0.00 0.00 0.00 2.73
1181 1205 3.898509 GCGCCACAAGGTTGCACA 61.899 61.111 0.00 0.00 38.02 4.57
1182 1206 3.829272 CTGCGCCACAAGGTTGCAC 62.829 63.158 4.18 0.00 41.41 4.57
1183 1207 3.594775 CTGCGCCACAAGGTTGCA 61.595 61.111 4.18 0.00 43.15 4.08
1184 1208 4.347453 CCTGCGCCACAAGGTTGC 62.347 66.667 4.18 0.00 38.43 4.17
1185 1209 2.015227 AAACCTGCGCCACAAGGTTG 62.015 55.000 25.39 0.00 38.78 3.77
1251 1275 3.446161 ACACGGTTCCGATTCTCTTATCA 59.554 43.478 18.28 0.00 0.00 2.15
1272 1296 0.514691 CAAGCTTCTGCGACTTGGAC 59.485 55.000 0.00 0.00 45.42 4.02
1354 1378 5.818136 TGCAGGAATAAGCACAAATCTAC 57.182 39.130 0.00 0.00 35.51 2.59
1376 1400 1.834263 GGGGCAATCTAGTGTCTCAGT 59.166 52.381 0.00 0.00 0.00 3.41
1392 1416 0.825010 CAGGCATGGAGTTATGGGGC 60.825 60.000 0.00 0.00 0.00 5.80
1471 1496 8.986477 ATTTATTTAAATCACCACAGAGCAAC 57.014 30.769 3.39 0.00 30.50 4.17
1549 1574 4.346418 TGGTGCCAAAATAACAAGGAACAT 59.654 37.500 0.00 0.00 30.85 2.71
1558 1583 3.762407 ACCCTTTGGTGCCAAAATAAC 57.238 42.857 16.08 0.00 45.58 1.89
1580 1605 0.884704 TGAAACGGAACTCTGGCTGC 60.885 55.000 0.00 0.00 0.00 5.25
1601 1626 3.049912 GGAAAAAGGTGTCACGCAAATC 58.950 45.455 0.00 0.00 0.00 2.17
1613 1640 4.657814 TCTGCAGGATAAGGAAAAAGGT 57.342 40.909 15.13 0.00 0.00 3.50
1620 1647 4.307259 ACCCTTAATCTGCAGGATAAGGA 58.693 43.478 35.53 13.92 37.37 3.36
1625 1652 4.018050 AGACAAACCCTTAATCTGCAGGAT 60.018 41.667 15.13 5.61 35.97 3.24
1805 1832 7.116376 TCAGACAAAATAATCGACTCTTCACAC 59.884 37.037 0.00 0.00 0.00 3.82
1813 1841 7.672983 AACACATCAGACAAAATAATCGACT 57.327 32.000 0.00 0.00 0.00 4.18
1885 1913 7.791766 AGGGAGGAGTCAATTCTAGATATTCAA 59.208 37.037 0.00 0.00 0.00 2.69
1929 1957 8.706492 ACCATGCAATTATTTTGTTGACATAG 57.294 30.769 0.00 0.00 0.00 2.23
1931 1961 7.388437 AGACCATGCAATTATTTTGTTGACAT 58.612 30.769 0.00 0.00 0.00 3.06
1933 1963 7.599998 AGAAGACCATGCAATTATTTTGTTGAC 59.400 33.333 0.00 0.00 0.00 3.18
1938 1968 7.894376 AACAGAAGACCATGCAATTATTTTG 57.106 32.000 0.00 0.00 0.00 2.44
1951 1981 6.934645 CACTTGATAACCTAAACAGAAGACCA 59.065 38.462 0.00 0.00 0.00 4.02
1953 1983 7.159372 TCCACTTGATAACCTAAACAGAAGAC 58.841 38.462 0.00 0.00 0.00 3.01
1957 1987 7.016153 ACATCCACTTGATAACCTAAACAGA 57.984 36.000 0.00 0.00 30.56 3.41
1958 1988 7.390440 TGAACATCCACTTGATAACCTAAACAG 59.610 37.037 0.00 0.00 30.56 3.16
1959 1989 7.227873 TGAACATCCACTTGATAACCTAAACA 58.772 34.615 0.00 0.00 30.56 2.83
2254 2284 0.181350 CCCTCCATGCAAGTAGGACC 59.819 60.000 1.59 0.00 0.00 4.46
2325 2355 8.428186 AAATAAAAGGAATACAGATTCGCGTA 57.572 30.769 5.77 0.00 42.20 4.42
2327 2357 9.878599 AATAAATAAAAGGAATACAGATTCGCG 57.121 29.630 0.00 0.00 42.20 5.87
2347 2377 9.985730 TGAAAAATGCACTTCTCTCAAATAAAT 57.014 25.926 0.00 0.00 0.00 1.40
2348 2378 9.814899 TTGAAAAATGCACTTCTCTCAAATAAA 57.185 25.926 0.00 0.00 0.00 1.40
2349 2379 9.248291 GTTGAAAAATGCACTTCTCTCAAATAA 57.752 29.630 0.00 0.00 0.00 1.40
2350 2380 7.867403 GGTTGAAAAATGCACTTCTCTCAAATA 59.133 33.333 0.00 0.00 0.00 1.40
2940 3004 1.071299 AGTCAGCATGCCACGTCAA 59.929 52.632 15.66 0.00 34.76 3.18
3182 3246 4.876107 CACATCCAGTGTAAGGTCAATACC 59.124 45.833 0.00 0.00 43.78 2.73
3238 3302 5.402398 CAACAATGTTCCTTTAAGCCTAGC 58.598 41.667 0.00 0.00 0.00 3.42
3257 3321 4.616604 GCAGTAAGCATCATTTCTGCAACA 60.617 41.667 11.61 0.00 46.69 3.33
3259 3323 4.100707 GCAGTAAGCATCATTTCTGCAA 57.899 40.909 11.61 0.00 46.69 4.08
3293 3357 7.168469 CGAAGGAAACATGAAACGGTTAAAAAT 59.832 33.333 0.00 0.00 0.00 1.82
3294 3358 6.472808 CGAAGGAAACATGAAACGGTTAAAAA 59.527 34.615 0.00 0.00 0.00 1.94
3316 3380 0.988832 AAACCTAGATGGGGTGCGAA 59.011 50.000 0.00 0.00 41.11 4.70
3322 3386 3.085952 TCAGCAAAAACCTAGATGGGG 57.914 47.619 0.00 0.00 41.11 4.96
3324 3388 6.064060 TCCATATCAGCAAAAACCTAGATGG 58.936 40.000 0.00 0.00 42.93 3.51
3472 3536 1.003545 CGCTTGCCTTTGATGTATCGG 60.004 52.381 0.00 0.00 0.00 4.18
3553 3617 3.031013 TGCATCTTCCGGTTCATCTCTA 58.969 45.455 0.00 0.00 0.00 2.43
3614 3678 0.038166 TTCATGTCCAGGCCTGTTCC 59.962 55.000 30.63 17.80 0.00 3.62
3673 3737 3.126000 GCCACATTCAAGTTCTGAGCTAC 59.874 47.826 0.00 0.00 34.81 3.58
3687 3751 1.263217 AGACACGAAAACGCCACATTC 59.737 47.619 0.00 0.00 0.00 2.67
3691 3755 1.368850 GCAGACACGAAAACGCCAC 60.369 57.895 0.00 0.00 0.00 5.01
3827 3892 4.119136 CAACAGCATGATATGTACCGACA 58.881 43.478 0.00 0.00 39.69 4.35
3932 4000 7.681679 TGTTGGACACCTTACATTACATTCTA 58.318 34.615 0.00 0.00 0.00 2.10
4036 4114 9.979578 TTATTTACATCAAACACAGCATTCTTT 57.020 25.926 0.00 0.00 0.00 2.52
4043 4121 9.463443 AACTTTCTTATTTACATCAAACACAGC 57.537 29.630 0.00 0.00 0.00 4.40
4085 4163 7.254795 GCTGATGTAGTAAACCACCATGAATAC 60.255 40.741 0.00 0.00 0.00 1.89
4087 4165 5.590259 GCTGATGTAGTAAACCACCATGAAT 59.410 40.000 0.00 0.00 0.00 2.57
4146 4224 8.347004 TGTGTAAATCAAATTAGGAGCATTGA 57.653 30.769 0.00 0.00 36.35 2.57
4161 4239 9.936759 TTTGTGTCTACAGATATGTGTAAATCA 57.063 29.630 13.22 9.68 38.23 2.57
4184 4262 6.162079 AGCTCCATACTATCATCACGATTTG 58.838 40.000 0.00 0.00 35.39 2.32
4185 4263 6.352016 AGCTCCATACTATCATCACGATTT 57.648 37.500 0.00 0.00 35.39 2.17
4187 4265 5.991933 AAGCTCCATACTATCATCACGAT 57.008 39.130 0.00 0.00 38.21 3.73
4188 4266 5.069119 ACAAAGCTCCATACTATCATCACGA 59.931 40.000 0.00 0.00 0.00 4.35
4189 4267 5.292765 ACAAAGCTCCATACTATCATCACG 58.707 41.667 0.00 0.00 0.00 4.35
4192 4270 7.976135 ATGAACAAAGCTCCATACTATCATC 57.024 36.000 0.00 0.00 0.00 2.92
4194 4272 9.851686 AAATATGAACAAAGCTCCATACTATCA 57.148 29.630 0.00 0.00 0.00 2.15
4198 4276 7.552687 TCGAAAATATGAACAAAGCTCCATACT 59.447 33.333 0.00 0.00 0.00 2.12
4200 4278 7.857734 TCGAAAATATGAACAAAGCTCCATA 57.142 32.000 0.00 0.00 0.00 2.74
4201 4279 6.757897 TCGAAAATATGAACAAAGCTCCAT 57.242 33.333 0.00 0.00 0.00 3.41
4202 4280 6.554419 CATCGAAAATATGAACAAAGCTCCA 58.446 36.000 0.00 0.00 0.00 3.86
4203 4281 5.456822 GCATCGAAAATATGAACAAAGCTCC 59.543 40.000 0.00 0.00 0.00 4.70
4204 4282 5.456822 GGCATCGAAAATATGAACAAAGCTC 59.543 40.000 0.00 0.00 0.00 4.09
4205 4283 5.126061 AGGCATCGAAAATATGAACAAAGCT 59.874 36.000 0.00 0.00 0.00 3.74
4206 4284 5.343249 AGGCATCGAAAATATGAACAAAGC 58.657 37.500 0.00 0.00 0.00 3.51
4265 4960 6.349973 TGCTAGATTATTGAAAGAGTTGCG 57.650 37.500 0.00 0.00 0.00 4.85
4276 4971 8.798859 AGTGGCCTAATATTGCTAGATTATTG 57.201 34.615 3.32 0.00 0.00 1.90
4277 4972 8.830741 AGAGTGGCCTAATATTGCTAGATTATT 58.169 33.333 3.32 0.00 0.00 1.40
4325 5021 3.817084 TCTTCAGTCAAATTGCTGGACAG 59.183 43.478 14.18 0.00 34.04 3.51
4480 5176 4.997565 ACAACACAACAAAGACATCAAGG 58.002 39.130 0.00 0.00 0.00 3.61
4481 5177 7.914871 TGAATACAACACAACAAAGACATCAAG 59.085 33.333 0.00 0.00 0.00 3.02
4500 5196 7.036829 CCAATGCACAATTCTTGATGAATACA 58.963 34.615 0.00 0.00 43.99 2.29
4537 5233 0.761187 TGTATCCAGGATGAGCTGCC 59.239 55.000 12.80 0.00 39.69 4.85
4547 5243 5.163513 GTGAAAACTTGCAATGTATCCAGG 58.836 41.667 0.00 0.00 0.00 4.45
4609 5305 0.798776 CCCAAAGCATCTCGTGTGAC 59.201 55.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.