Multiple sequence alignment - TraesCS5A01G041000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G041000 chr5A 100.000 3422 0 0 1 3422 36951552 36948131 0.000000e+00 6320.0
1 TraesCS5A01G041000 chr5A 86.979 791 79 19 1853 2628 37401599 37400818 0.000000e+00 869.0
2 TraesCS5A01G041000 chr5A 85.051 689 100 1 975 1663 37402282 37401597 0.000000e+00 699.0
3 TraesCS5A01G041000 chr5A 85.395 671 78 16 1853 2509 37193705 37193041 0.000000e+00 678.0
4 TraesCS5A01G041000 chr5A 83.934 666 106 1 999 1663 36942966 36942301 1.340000e-178 636.0
5 TraesCS5A01G041000 chr5A 82.367 431 47 19 2437 2842 36825577 36825151 7.030000e-92 348.0
6 TraesCS5A01G041000 chr5A 97.761 134 3 0 2776 2909 36948712 36948579 7.390000e-57 231.0
7 TraesCS5A01G041000 chr5A 97.761 134 3 0 2841 2974 36948777 36948644 7.390000e-57 231.0
8 TraesCS5A01G041000 chr5A 98.551 69 1 0 2776 2844 36948647 36948579 4.640000e-24 122.0
9 TraesCS5A01G041000 chr5A 98.551 69 1 0 2906 2974 36948777 36948709 4.640000e-24 122.0
10 TraesCS5A01G041000 chr5D 96.757 2683 66 6 748 3422 45872933 45875602 0.000000e+00 4453.0
11 TraesCS5A01G041000 chr5D 85.696 790 88 20 1857 2631 46275098 46274319 0.000000e+00 809.0
12 TraesCS5A01G041000 chr5D 84.311 682 107 0 982 1663 46128590 46127909 0.000000e+00 667.0
13 TraesCS5A01G041000 chr5D 83.893 596 69 13 15 593 75914127 75914712 8.350000e-151 544.0
14 TraesCS5A01G041000 chr5D 78.107 507 62 26 2226 2713 46126741 46126265 3.360000e-70 276.0
15 TraesCS5A01G041000 chr5D 97.761 134 3 0 2776 2909 45875020 45875153 7.390000e-57 231.0
16 TraesCS5A01G041000 chr5D 97.015 134 4 0 2841 2974 45874955 45875088 3.440000e-55 226.0
17 TraesCS5A01G041000 chr5D 98.551 69 1 0 2776 2844 45875085 45875153 4.640000e-24 122.0
18 TraesCS5A01G041000 chr5B 86.456 886 91 19 1853 2716 46746602 46745724 0.000000e+00 944.0
19 TraesCS5A01G041000 chr5B 83.723 1026 117 36 1853 2839 46635320 46634306 0.000000e+00 924.0
20 TraesCS5A01G041000 chr5B 86.020 794 86 19 1853 2631 48147046 48147829 0.000000e+00 828.0
21 TraesCS5A01G041000 chr5B 82.955 880 110 23 1852 2714 46152214 46151358 0.000000e+00 758.0
22 TraesCS5A01G041000 chr5B 83.291 784 105 20 1853 2631 47127417 47126655 0.000000e+00 699.0
23 TraesCS5A01G041000 chr5B 82.540 756 120 7 906 1653 47128176 47127425 0.000000e+00 654.0
24 TraesCS5A01G041000 chr5B 89.784 509 46 6 1853 2357 46767749 46767243 0.000000e+00 647.0
25 TraesCS5A01G041000 chr5B 82.580 752 113 9 913 1663 46768481 46767747 0.000000e+00 647.0
26 TraesCS5A01G041000 chr5B 82.306 746 120 7 905 1650 48146302 48147035 1.340000e-178 636.0
27 TraesCS5A01G041000 chr5B 82.118 727 114 9 937 1659 46152929 46152215 2.920000e-170 608.0
28 TraesCS5A01G041000 chr5B 78.798 599 78 28 2130 2713 46632632 46632068 1.170000e-94 357.0
29 TraesCS5A01G041000 chr5B 88.608 237 20 4 2906 3142 46634368 46634139 7.230000e-72 281.0
30 TraesCS5A01G041000 chr5B 85.425 247 24 7 2906 3142 46766348 46766104 2.640000e-61 246.0
31 TraesCS5A01G041000 chr2B 84.585 759 98 17 1853 2604 731711269 731712015 0.000000e+00 736.0
32 TraesCS5A01G041000 chr2B 80.319 752 131 8 909 1660 731710534 731711268 1.390000e-153 553.0
33 TraesCS5A01G041000 chr2B 90.411 73 7 0 3206 3278 731713159 731713231 2.810000e-16 97.1
34 TraesCS5A01G041000 chr2A 85.517 435 57 6 54 486 277178933 277179363 1.870000e-122 449.0
35 TraesCS5A01G041000 chr2A 83.182 220 29 6 3206 3422 734802416 734802630 9.690000e-46 195.0
36 TraesCS5A01G041000 chr3B 85.078 449 54 11 54 495 66626984 66627426 2.420000e-121 446.0
37 TraesCS5A01G041000 chr3B 82.983 476 70 10 15 486 428067374 428067842 1.470000e-113 420.0
38 TraesCS5A01G041000 chr3B 83.827 439 58 12 54 486 767301431 767301862 4.110000e-109 405.0
39 TraesCS5A01G041000 chr7B 81.919 542 71 12 59 578 124361714 124361178 1.890000e-117 433.0
40 TraesCS5A01G041000 chr6B 82.443 524 63 18 59 559 705759223 705759740 6.780000e-117 431.0
41 TraesCS5A01G041000 chr6B 81.667 540 71 14 59 575 547693996 547694530 1.140000e-114 424.0
42 TraesCS5A01G041000 chrUn 86.146 397 47 7 88 483 79888505 79888894 4.080000e-114 422.0
43 TraesCS5A01G041000 chr2D 81.385 231 30 11 3196 3422 601429587 601429808 3.510000e-40 176.0
44 TraesCS5A01G041000 chr6D 87.037 54 5 2 1666 1717 456115125 456115072 3.690000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G041000 chr5A 36948131 36951552 3421 True 1405.200000 6320 98.524800 1 3422 5 chr5A.!!$R4 3421
1 TraesCS5A01G041000 chr5A 37400818 37402282 1464 True 784.000000 869 86.015000 975 2628 2 chr5A.!!$R5 1653
2 TraesCS5A01G041000 chr5A 37193041 37193705 664 True 678.000000 678 85.395000 1853 2509 1 chr5A.!!$R3 656
3 TraesCS5A01G041000 chr5A 36942301 36942966 665 True 636.000000 636 83.934000 999 1663 1 chr5A.!!$R2 664
4 TraesCS5A01G041000 chr5D 45872933 45875602 2669 False 1258.000000 4453 97.521000 748 3422 4 chr5D.!!$F2 2674
5 TraesCS5A01G041000 chr5D 46274319 46275098 779 True 809.000000 809 85.696000 1857 2631 1 chr5D.!!$R1 774
6 TraesCS5A01G041000 chr5D 75914127 75914712 585 False 544.000000 544 83.893000 15 593 1 chr5D.!!$F1 578
7 TraesCS5A01G041000 chr5D 46126265 46128590 2325 True 471.500000 667 81.209000 982 2713 2 chr5D.!!$R2 1731
8 TraesCS5A01G041000 chr5B 46745724 46746602 878 True 944.000000 944 86.456000 1853 2716 1 chr5B.!!$R1 863
9 TraesCS5A01G041000 chr5B 48146302 48147829 1527 False 732.000000 828 84.163000 905 2631 2 chr5B.!!$F1 1726
10 TraesCS5A01G041000 chr5B 46151358 46152929 1571 True 683.000000 758 82.536500 937 2714 2 chr5B.!!$R2 1777
11 TraesCS5A01G041000 chr5B 47126655 47128176 1521 True 676.500000 699 82.915500 906 2631 2 chr5B.!!$R5 1725
12 TraesCS5A01G041000 chr5B 46632068 46635320 3252 True 520.666667 924 83.709667 1853 3142 3 chr5B.!!$R3 1289
13 TraesCS5A01G041000 chr5B 46766104 46768481 2377 True 513.333333 647 85.929667 913 3142 3 chr5B.!!$R4 2229
14 TraesCS5A01G041000 chr2B 731710534 731713231 2697 False 462.033333 736 85.105000 909 3278 3 chr2B.!!$F1 2369
15 TraesCS5A01G041000 chr7B 124361178 124361714 536 True 433.000000 433 81.919000 59 578 1 chr7B.!!$R1 519
16 TraesCS5A01G041000 chr6B 705759223 705759740 517 False 431.000000 431 82.443000 59 559 1 chr6B.!!$F2 500
17 TraesCS5A01G041000 chr6B 547693996 547694530 534 False 424.000000 424 81.667000 59 575 1 chr6B.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 601 0.033601 TGGCTTTGTGTTGGACTGGT 60.034 50.0 0.00 0.0 0.0 4.00 F
724 747 0.034670 AGAAGGAGACAGGCCAATGC 60.035 55.0 5.01 0.0 0.0 3.56 F
1554 1598 0.034896 AAGGAGCGGACGTGACATTT 59.965 50.0 0.00 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 1683 3.590574 GCCCCCTTGTTCCCCAGT 61.591 66.667 0.0 0.0 0.0 4.00 R
2294 2342 3.722147 CATCCACCTCCAAAGATCTACG 58.278 50.000 0.0 0.0 0.0 3.51 R
3327 6207 3.251487 ACAAACTTAACCGAAATCACCCG 59.749 43.478 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.393764 CTTTGGCAAAAGCTACAACCG 58.606 47.619 14.43 0.00 36.63 4.44
32 33 2.857104 GCAAAAGCTACAACCGAACCAC 60.857 50.000 0.00 0.00 0.00 4.16
38 39 0.178301 TACAACCGAACCACAGTGCA 59.822 50.000 0.00 0.00 0.00 4.57
40 41 1.095228 CAACCGAACCACAGTGCACT 61.095 55.000 15.25 15.25 0.00 4.40
41 42 0.466543 AACCGAACCACAGTGCACTA 59.533 50.000 21.20 0.00 0.00 2.74
44 45 1.291877 CGAACCACAGTGCACTAGCC 61.292 60.000 21.20 5.02 41.13 3.93
48 49 1.317613 CCACAGTGCACTAGCCAAAA 58.682 50.000 21.20 0.00 41.13 2.44
49 50 1.267806 CCACAGTGCACTAGCCAAAAG 59.732 52.381 21.20 7.04 41.13 2.27
50 51 0.954452 ACAGTGCACTAGCCAAAAGC 59.046 50.000 21.20 0.00 41.13 3.51
65 66 6.112994 GCCAAAAGCTAGAACAAGAGATAC 57.887 41.667 0.00 0.00 38.99 2.24
71 72 8.910351 AAAGCTAGAACAAGAGATACAAAAGT 57.090 30.769 0.00 0.00 0.00 2.66
81 82 7.773690 ACAAGAGATACAAAAGTTACAACCACT 59.226 33.333 0.00 0.00 0.00 4.00
85 86 8.691661 AGATACAAAAGTTACAACCACTCATT 57.308 30.769 0.00 0.00 0.00 2.57
173 175 1.067354 GGAAGCTTCAACCAGCCATTG 60.067 52.381 27.02 0.00 41.12 2.82
176 178 0.109597 GCTTCAACCAGCCATTGTCG 60.110 55.000 0.00 0.00 33.21 4.35
188 190 2.293399 GCCATTGTCGGACTGAAAAAGT 59.707 45.455 9.88 0.00 43.85 2.66
195 197 3.013921 TCGGACTGAAAAAGTTGCAACT 58.986 40.909 26.36 26.36 40.07 3.16
197 199 2.860136 GGACTGAAAAAGTTGCAACTGC 59.140 45.455 31.73 20.50 40.07 4.40
198 200 2.860136 GACTGAAAAAGTTGCAACTGCC 59.140 45.455 31.73 19.87 40.07 4.85
200 202 3.118665 ACTGAAAAAGTTGCAACTGCCAT 60.119 39.130 31.73 18.21 39.66 4.40
206 208 3.102052 AGTTGCAACTGCCATGAAAAG 57.898 42.857 30.66 0.00 41.18 2.27
306 310 3.011119 TGCAACCGTTTACAGAACAAGT 58.989 40.909 0.00 0.00 0.00 3.16
320 324 6.157211 ACAGAACAAGTTTCGATCGTAGATT 58.843 36.000 15.94 3.92 45.12 2.40
321 325 7.310664 ACAGAACAAGTTTCGATCGTAGATTA 58.689 34.615 15.94 0.00 45.12 1.75
362 367 0.678048 GGGGAAGCTTCAATCTGCGT 60.678 55.000 27.02 0.00 0.00 5.24
399 404 2.030274 GCATGGTAAAAGCTTCAACCGT 60.030 45.455 19.75 17.81 34.60 4.83
405 410 3.420839 AAAAGCTTCAACCGTTGTGAG 57.579 42.857 11.01 10.95 0.00 3.51
421 428 5.640732 GTTGTGAGAAAAAGCTTCAACTGA 58.359 37.500 14.39 1.18 33.97 3.41
426 433 1.014352 AAAAGCTTCAACTGACGCGT 58.986 45.000 13.85 13.85 43.15 6.01
463 470 4.742201 GTTGAGAGCTGCGGCCGA 62.742 66.667 33.48 13.59 39.73 5.54
486 493 4.406173 CGAGAGTGCAGCGACGGT 62.406 66.667 0.00 0.00 0.00 4.83
511 534 1.005037 TAGGTGCTGCAACGACAGG 60.005 57.895 12.67 0.00 38.16 4.00
514 537 4.641645 TGCTGCAACGACAGGGGG 62.642 66.667 0.00 0.00 38.16 5.40
559 582 2.073816 CGTTTTTGCTACGGGAGTGAT 58.926 47.619 0.00 0.00 46.80 3.06
565 588 0.107654 GCTACGGGAGTGATGGCTTT 60.108 55.000 0.00 0.00 46.80 3.51
569 592 0.606401 CGGGAGTGATGGCTTTGTGT 60.606 55.000 0.00 0.00 0.00 3.72
575 598 1.956477 GTGATGGCTTTGTGTTGGACT 59.044 47.619 0.00 0.00 0.00 3.85
578 601 0.033601 TGGCTTTGTGTTGGACTGGT 60.034 50.000 0.00 0.00 0.00 4.00
588 611 1.625818 GTTGGACTGGTGAGGACAGAT 59.374 52.381 0.00 0.00 39.24 2.90
594 617 0.322648 TGGTGAGGACAGATGCTGTG 59.677 55.000 4.60 0.00 45.44 3.66
595 618 0.392193 GGTGAGGACAGATGCTGTGG 60.392 60.000 4.60 0.00 45.44 4.17
596 619 1.023513 GTGAGGACAGATGCTGTGGC 61.024 60.000 4.60 0.00 45.44 5.01
597 620 1.812922 GAGGACAGATGCTGTGGCG 60.813 63.158 4.60 0.00 45.44 5.69
598 621 2.821366 GGACAGATGCTGTGGCGG 60.821 66.667 4.60 0.00 45.44 6.13
599 622 2.046892 GACAGATGCTGTGGCGGT 60.047 61.111 4.60 0.00 45.44 5.68
600 623 1.672356 GACAGATGCTGTGGCGGTT 60.672 57.895 4.60 0.00 45.44 4.44
601 624 0.391130 GACAGATGCTGTGGCGGTTA 60.391 55.000 4.60 0.00 45.44 2.85
602 625 0.673644 ACAGATGCTGTGGCGGTTAC 60.674 55.000 0.00 0.00 43.63 2.50
603 626 1.447838 AGATGCTGTGGCGGTTACG 60.448 57.895 0.00 0.00 42.25 3.18
604 627 1.447140 GATGCTGTGGCGGTTACGA 60.447 57.895 0.00 0.00 44.60 3.43
605 628 1.421410 GATGCTGTGGCGGTTACGAG 61.421 60.000 0.00 0.00 44.60 4.18
606 629 2.813908 GCTGTGGCGGTTACGAGG 60.814 66.667 0.00 0.00 44.60 4.63
607 630 2.967397 CTGTGGCGGTTACGAGGA 59.033 61.111 0.00 0.00 44.60 3.71
608 631 1.445582 CTGTGGCGGTTACGAGGAC 60.446 63.158 0.00 0.00 44.60 3.85
609 632 2.505557 GTGGCGGTTACGAGGACG 60.506 66.667 0.00 0.00 44.60 4.79
610 633 3.751246 TGGCGGTTACGAGGACGG 61.751 66.667 0.00 0.00 44.60 4.79
613 636 3.803082 CGGTTACGAGGACGGCGA 61.803 66.667 16.62 0.00 44.60 5.54
614 637 2.101770 GGTTACGAGGACGGCGAG 59.898 66.667 16.62 1.47 44.46 5.03
615 638 2.578981 GTTACGAGGACGGCGAGC 60.579 66.667 16.62 4.71 44.46 5.03
616 639 4.170062 TTACGAGGACGGCGAGCG 62.170 66.667 16.62 13.60 44.46 5.03
622 645 4.856607 GGACGGCGAGCGAGGAAG 62.857 72.222 16.62 0.00 0.00 3.46
623 646 4.856607 GACGGCGAGCGAGGAAGG 62.857 72.222 16.62 0.00 0.00 3.46
625 648 4.560856 CGGCGAGCGAGGAAGGAG 62.561 72.222 0.00 0.00 0.00 3.69
626 649 4.214327 GGCGAGCGAGGAAGGAGG 62.214 72.222 0.00 0.00 0.00 4.30
627 650 3.453679 GCGAGCGAGGAAGGAGGT 61.454 66.667 0.00 0.00 0.00 3.85
628 651 2.802106 CGAGCGAGGAAGGAGGTC 59.198 66.667 0.00 0.00 0.00 3.85
629 652 1.751162 CGAGCGAGGAAGGAGGTCT 60.751 63.158 0.00 0.00 0.00 3.85
630 653 0.464013 CGAGCGAGGAAGGAGGTCTA 60.464 60.000 0.00 0.00 0.00 2.59
631 654 1.314730 GAGCGAGGAAGGAGGTCTAG 58.685 60.000 0.00 0.00 0.00 2.43
632 655 0.106419 AGCGAGGAAGGAGGTCTAGG 60.106 60.000 0.00 0.00 0.00 3.02
633 656 0.396001 GCGAGGAAGGAGGTCTAGGT 60.396 60.000 0.00 0.00 0.00 3.08
634 657 1.394618 CGAGGAAGGAGGTCTAGGTG 58.605 60.000 0.00 0.00 0.00 4.00
635 658 1.064611 CGAGGAAGGAGGTCTAGGTGA 60.065 57.143 0.00 0.00 0.00 4.02
636 659 2.661718 GAGGAAGGAGGTCTAGGTGAG 58.338 57.143 0.00 0.00 0.00 3.51
637 660 2.242708 GAGGAAGGAGGTCTAGGTGAGA 59.757 54.545 0.00 0.00 0.00 3.27
638 661 2.243736 AGGAAGGAGGTCTAGGTGAGAG 59.756 54.545 0.00 0.00 33.72 3.20
639 662 2.661718 GAAGGAGGTCTAGGTGAGAGG 58.338 57.143 0.00 0.00 33.72 3.69
640 663 0.930726 AGGAGGTCTAGGTGAGAGGG 59.069 60.000 0.00 0.00 33.72 4.30
641 664 0.632294 GGAGGTCTAGGTGAGAGGGT 59.368 60.000 0.00 0.00 33.72 4.34
642 665 1.686741 GGAGGTCTAGGTGAGAGGGTG 60.687 61.905 0.00 0.00 33.72 4.61
643 666 0.336737 AGGTCTAGGTGAGAGGGTGG 59.663 60.000 0.00 0.00 33.72 4.61
644 667 0.041386 GGTCTAGGTGAGAGGGTGGT 59.959 60.000 0.00 0.00 33.72 4.16
645 668 1.187087 GTCTAGGTGAGAGGGTGGTG 58.813 60.000 0.00 0.00 33.72 4.17
646 669 0.041238 TCTAGGTGAGAGGGTGGTGG 59.959 60.000 0.00 0.00 0.00 4.61
647 670 1.612442 TAGGTGAGAGGGTGGTGGC 60.612 63.158 0.00 0.00 0.00 5.01
648 671 4.035102 GGTGAGAGGGTGGTGGCC 62.035 72.222 0.00 0.00 0.00 5.36
675 698 3.976339 GGAGGATGTCCAGTCGATG 57.024 57.895 1.30 0.00 46.10 3.84
683 706 3.402681 CCAGTCGATGGGGGCAGT 61.403 66.667 6.11 0.00 46.36 4.40
684 707 2.124983 CAGTCGATGGGGGCAGTG 60.125 66.667 0.00 0.00 0.00 3.66
685 708 4.101448 AGTCGATGGGGGCAGTGC 62.101 66.667 6.55 6.55 0.00 4.40
707 730 4.121669 GCTGCGCGTGGAGAGAGA 62.122 66.667 22.49 0.00 35.14 3.10
708 731 2.568612 CTGCGCGTGGAGAGAGAA 59.431 61.111 12.68 0.00 35.14 2.87
709 732 1.515952 CTGCGCGTGGAGAGAGAAG 60.516 63.158 12.68 0.00 35.14 2.85
710 733 2.202676 GCGCGTGGAGAGAGAAGG 60.203 66.667 8.43 0.00 0.00 3.46
711 734 2.701780 GCGCGTGGAGAGAGAAGGA 61.702 63.158 8.43 0.00 0.00 3.36
712 735 1.431440 CGCGTGGAGAGAGAAGGAG 59.569 63.158 0.00 0.00 0.00 3.69
713 736 1.027255 CGCGTGGAGAGAGAAGGAGA 61.027 60.000 0.00 0.00 0.00 3.71
714 737 0.454196 GCGTGGAGAGAGAAGGAGAC 59.546 60.000 0.00 0.00 0.00 3.36
715 738 1.827681 CGTGGAGAGAGAAGGAGACA 58.172 55.000 0.00 0.00 0.00 3.41
716 739 1.742831 CGTGGAGAGAGAAGGAGACAG 59.257 57.143 0.00 0.00 0.00 3.51
717 740 2.099405 GTGGAGAGAGAAGGAGACAGG 58.901 57.143 0.00 0.00 0.00 4.00
718 741 1.111277 GGAGAGAGAAGGAGACAGGC 58.889 60.000 0.00 0.00 0.00 4.85
719 742 1.111277 GAGAGAGAAGGAGACAGGCC 58.889 60.000 0.00 0.00 0.00 5.19
720 743 0.411452 AGAGAGAAGGAGACAGGCCA 59.589 55.000 5.01 0.00 0.00 5.36
721 744 1.203237 AGAGAGAAGGAGACAGGCCAA 60.203 52.381 5.01 0.00 0.00 4.52
722 745 1.836802 GAGAGAAGGAGACAGGCCAAT 59.163 52.381 5.01 0.00 0.00 3.16
723 746 1.558756 AGAGAAGGAGACAGGCCAATG 59.441 52.381 5.01 0.00 0.00 2.82
724 747 0.034670 AGAAGGAGACAGGCCAATGC 60.035 55.000 5.01 0.00 0.00 3.56
725 748 1.372087 GAAGGAGACAGGCCAATGCG 61.372 60.000 5.01 0.00 38.85 4.73
726 749 3.512516 GGAGACAGGCCAATGCGC 61.513 66.667 5.01 0.00 38.85 6.09
727 750 3.869272 GAGACAGGCCAATGCGCG 61.869 66.667 5.01 0.00 38.85 6.86
758 781 4.003648 CAGTACTCGCCAAGGAGAAAAAT 58.996 43.478 0.00 0.00 37.49 1.82
819 842 5.387788 TGAAGTGGTGAAGTACTGGTAGTA 58.612 41.667 0.00 0.00 0.00 1.82
820 843 5.475909 TGAAGTGGTGAAGTACTGGTAGTAG 59.524 44.000 0.00 0.00 30.12 2.57
821 844 5.252586 AGTGGTGAAGTACTGGTAGTAGA 57.747 43.478 0.00 0.00 30.12 2.59
822 845 5.638133 AGTGGTGAAGTACTGGTAGTAGAA 58.362 41.667 0.00 0.00 30.12 2.10
823 846 5.711036 AGTGGTGAAGTACTGGTAGTAGAAG 59.289 44.000 0.00 0.00 30.12 2.85
824 847 4.461781 TGGTGAAGTACTGGTAGTAGAAGC 59.538 45.833 0.00 0.00 30.12 3.86
825 848 4.438472 GGTGAAGTACTGGTAGTAGAAGCG 60.438 50.000 0.00 0.00 30.12 4.68
826 849 4.155644 GTGAAGTACTGGTAGTAGAAGCGT 59.844 45.833 0.00 0.00 30.12 5.07
832 855 4.267536 ACTGGTAGTAGAAGCGTACATCA 58.732 43.478 0.00 0.00 0.00 3.07
847 870 4.929211 CGTACATCACAATTTCTCACCTCA 59.071 41.667 0.00 0.00 0.00 3.86
860 883 4.016444 TCTCACCTCAGCACAAAACTTTT 58.984 39.130 0.00 0.00 0.00 2.27
867 890 5.159273 TCAGCACAAAACTTTTCCCTTTT 57.841 34.783 0.00 0.00 0.00 2.27
899 922 1.738099 CTCGCACCTTCTTCCACCG 60.738 63.158 0.00 0.00 0.00 4.94
958 981 0.108138 CCGGCCTTGATCGAGAGTTT 60.108 55.000 11.89 0.00 0.00 2.66
1059 1102 2.108771 TGCACAGCAGAGACGCAA 59.891 55.556 0.00 0.00 33.32 4.85
1220 1263 3.181967 CGAGGCGAGCGAAGGTTG 61.182 66.667 0.00 0.00 39.88 3.77
1322 1366 3.044305 GCAGTCGACTGTGGTGCC 61.044 66.667 38.11 21.66 45.45 5.01
1554 1598 0.034896 AAGGAGCGGACGTGACATTT 59.965 50.000 0.00 0.00 0.00 2.32
1611 1656 2.463620 GCTTGCGATGCGATCACCA 61.464 57.895 0.00 0.00 0.00 4.17
1638 1683 1.210478 GAAGCAGAGTTCTATGGGCCA 59.790 52.381 9.61 9.61 0.00 5.36
1729 1774 3.253188 GCATTTCCAACAAGTGACAGCTA 59.747 43.478 0.00 0.00 0.00 3.32
1821 1866 3.257127 TGGTTTGCTTACCTATTGGCAAC 59.743 43.478 0.00 0.00 43.03 4.17
1850 1895 2.864471 GCAGCAAACCAAGCAGCCT 61.864 57.895 0.00 0.00 38.40 4.58
2145 2190 5.950965 TCGAATTTATGCTCTCTTCGAAC 57.049 39.130 0.00 0.00 43.10 3.95
2294 2342 2.169352 TGCTGCTTATCCTTCAGTCTCC 59.831 50.000 0.00 0.00 0.00 3.71
2479 3102 7.497909 CCGAGTTGGTCCTATAAAATGTATGTT 59.502 37.037 0.00 0.00 0.00 2.71
2584 3993 7.027778 ACTTTAATTTCTGTCCTGTGTGAAC 57.972 36.000 0.00 0.00 0.00 3.18
2585 3994 6.828785 ACTTTAATTTCTGTCCTGTGTGAACT 59.171 34.615 0.00 0.00 0.00 3.01
2721 4911 4.022068 TGATTTCTTGACATGAACCTTGGC 60.022 41.667 0.00 0.00 0.00 4.52
2760 4956 9.658799 TCTTCGATTCAGAAAATCAGTTAGAAT 57.341 29.630 0.00 0.00 0.00 2.40
2797 5002 7.442364 CCAAACTACTTTGAGATCAGAGAACAA 59.558 37.037 7.33 0.00 39.43 2.83
2799 5004 6.162777 ACTACTTTGAGATCAGAGAACAAGC 58.837 40.000 7.33 0.00 32.92 4.01
3062 5276 8.870879 GCAACTACTTAAACCTCTATACTTGTG 58.129 37.037 0.00 0.00 0.00 3.33
3327 6207 9.136952 GGTAATATGTTCGTGATACCTTCATAC 57.863 37.037 0.00 0.00 36.54 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.356382 TGTGGTTCGGTTGTAGCTTTTG 59.644 45.455 0.00 0.00 0.00 2.44
13 14 2.616842 CTGTGGTTCGGTTGTAGCTTTT 59.383 45.455 0.00 0.00 0.00 2.27
14 15 2.218603 CTGTGGTTCGGTTGTAGCTTT 58.781 47.619 0.00 0.00 0.00 3.51
15 16 1.140252 ACTGTGGTTCGGTTGTAGCTT 59.860 47.619 0.00 0.00 30.45 3.74
16 17 0.756903 ACTGTGGTTCGGTTGTAGCT 59.243 50.000 0.00 0.00 30.45 3.32
17 18 0.865769 CACTGTGGTTCGGTTGTAGC 59.134 55.000 0.00 0.00 32.67 3.58
18 19 0.865769 GCACTGTGGTTCGGTTGTAG 59.134 55.000 10.21 0.00 32.67 2.74
19 20 0.178301 TGCACTGTGGTTCGGTTGTA 59.822 50.000 10.21 0.00 32.67 2.41
20 21 1.078072 TGCACTGTGGTTCGGTTGT 60.078 52.632 10.21 0.00 32.67 3.32
21 22 1.095228 AGTGCACTGTGGTTCGGTTG 61.095 55.000 20.97 0.00 32.67 3.77
22 23 0.466543 TAGTGCACTGTGGTTCGGTT 59.533 50.000 29.57 0.40 32.67 4.44
24 25 1.291877 GCTAGTGCACTGTGGTTCGG 61.292 60.000 29.57 9.47 39.41 4.30
26 27 0.250295 TGGCTAGTGCACTGTGGTTC 60.250 55.000 29.57 12.48 41.91 3.62
32 33 3.780925 GCTTTTGGCTAGTGCACTG 57.219 52.632 29.57 18.99 41.91 3.66
44 45 9.604626 CTTTTGTATCTCTTGTTCTAGCTTTTG 57.395 33.333 0.00 0.00 0.00 2.44
48 49 9.425577 GTAACTTTTGTATCTCTTGTTCTAGCT 57.574 33.333 0.00 0.00 0.00 3.32
49 50 9.204570 TGTAACTTTTGTATCTCTTGTTCTAGC 57.795 33.333 0.00 0.00 0.00 3.42
52 53 8.837389 GGTTGTAACTTTTGTATCTCTTGTTCT 58.163 33.333 0.00 0.00 0.00 3.01
53 54 8.617809 TGGTTGTAACTTTTGTATCTCTTGTTC 58.382 33.333 0.00 0.00 0.00 3.18
55 56 7.773690 AGTGGTTGTAACTTTTGTATCTCTTGT 59.226 33.333 0.00 0.00 0.00 3.16
63 64 9.398538 ACTAAATGAGTGGTTGTAACTTTTGTA 57.601 29.630 0.00 0.00 36.87 2.41
173 175 3.105937 GTTGCAACTTTTTCAGTCCGAC 58.894 45.455 22.36 0.00 32.94 4.79
176 178 2.860136 GCAGTTGCAACTTTTTCAGTCC 59.140 45.455 29.23 5.91 41.59 3.85
188 190 2.546373 GCTCTTTTCATGGCAGTTGCAA 60.546 45.455 6.43 0.00 44.36 4.08
195 197 2.297033 GGTTGAAGCTCTTTTCATGGCA 59.703 45.455 0.00 0.00 36.97 4.92
197 199 4.861102 AAGGTTGAAGCTCTTTTCATGG 57.139 40.909 0.00 0.00 36.97 3.66
198 200 5.474876 ACCTAAGGTTGAAGCTCTTTTCATG 59.525 40.000 0.00 0.00 36.97 3.07
200 202 4.821805 CACCTAAGGTTGAAGCTCTTTTCA 59.178 41.667 0.00 0.00 35.38 2.69
206 208 5.767816 TTTTTCACCTAAGGTTGAAGCTC 57.232 39.130 0.00 0.00 31.02 4.09
244 247 6.094325 CAGTGCCCGGTTGAAACTTTATATAA 59.906 38.462 0.00 0.00 0.00 0.98
249 252 1.950909 CAGTGCCCGGTTGAAACTTTA 59.049 47.619 0.00 0.00 0.00 1.85
338 342 1.657751 GATTGAAGCTTCCCCCGTGC 61.658 60.000 23.42 2.82 0.00 5.34
344 348 2.024176 TACGCAGATTGAAGCTTCCC 57.976 50.000 23.42 12.43 0.00 3.97
368 373 3.119495 GCTTTTACCATGCCGATTGAAGT 60.119 43.478 0.00 0.00 0.00 3.01
375 380 2.192664 TGAAGCTTTTACCATGCCGA 57.807 45.000 0.00 0.00 0.00 5.54
384 389 4.193090 TCTCACAACGGTTGAAGCTTTTA 58.807 39.130 26.39 5.37 0.00 1.52
399 404 5.640732 GTCAGTTGAAGCTTTTTCTCACAA 58.359 37.500 0.00 0.00 0.00 3.33
405 410 2.036933 CGCGTCAGTTGAAGCTTTTTC 58.963 47.619 15.94 0.00 45.24 2.29
514 537 2.427410 CTTGAAGCACGCCAACGC 60.427 61.111 0.00 0.00 45.53 4.84
556 579 1.955778 CAGTCCAACACAAAGCCATCA 59.044 47.619 0.00 0.00 0.00 3.07
559 582 0.033601 ACCAGTCCAACACAAAGCCA 60.034 50.000 0.00 0.00 0.00 4.75
565 588 0.468226 GTCCTCACCAGTCCAACACA 59.532 55.000 0.00 0.00 0.00 3.72
569 592 1.625315 CATCTGTCCTCACCAGTCCAA 59.375 52.381 0.00 0.00 0.00 3.53
575 598 0.322648 CACAGCATCTGTCCTCACCA 59.677 55.000 0.00 0.00 43.43 4.17
578 601 1.297689 GCCACAGCATCTGTCCTCA 59.702 57.895 0.00 0.00 43.43 3.86
588 611 2.048597 CTCGTAACCGCCACAGCA 60.049 61.111 0.00 0.00 39.83 4.41
593 616 3.751246 CCGTCCTCGTAACCGCCA 61.751 66.667 0.00 0.00 35.01 5.69
596 619 3.729906 CTCGCCGTCCTCGTAACCG 62.730 68.421 0.00 0.00 35.01 4.44
597 620 2.101770 CTCGCCGTCCTCGTAACC 59.898 66.667 0.00 0.00 35.01 2.85
598 621 2.578981 GCTCGCCGTCCTCGTAAC 60.579 66.667 0.00 0.00 35.01 2.50
599 622 4.170062 CGCTCGCCGTCCTCGTAA 62.170 66.667 0.00 0.00 35.01 3.18
605 628 4.856607 CTTCCTCGCTCGCCGTCC 62.857 72.222 0.00 0.00 38.35 4.79
606 629 4.856607 CCTTCCTCGCTCGCCGTC 62.857 72.222 0.00 0.00 38.35 4.79
608 631 4.560856 CTCCTTCCTCGCTCGCCG 62.561 72.222 0.00 0.00 38.61 6.46
609 632 4.214327 CCTCCTTCCTCGCTCGCC 62.214 72.222 0.00 0.00 0.00 5.54
610 633 3.418744 GACCTCCTTCCTCGCTCGC 62.419 68.421 0.00 0.00 0.00 5.03
611 634 0.464013 TAGACCTCCTTCCTCGCTCG 60.464 60.000 0.00 0.00 0.00 5.03
612 635 1.314730 CTAGACCTCCTTCCTCGCTC 58.685 60.000 0.00 0.00 0.00 5.03
613 636 0.106419 CCTAGACCTCCTTCCTCGCT 60.106 60.000 0.00 0.00 0.00 4.93
614 637 0.396001 ACCTAGACCTCCTTCCTCGC 60.396 60.000 0.00 0.00 0.00 5.03
615 638 1.064611 TCACCTAGACCTCCTTCCTCG 60.065 57.143 0.00 0.00 0.00 4.63
616 639 2.242708 TCTCACCTAGACCTCCTTCCTC 59.757 54.545 0.00 0.00 0.00 3.71
617 640 2.243736 CTCTCACCTAGACCTCCTTCCT 59.756 54.545 0.00 0.00 0.00 3.36
618 641 2.661718 CTCTCACCTAGACCTCCTTCC 58.338 57.143 0.00 0.00 0.00 3.46
619 642 2.661718 CCTCTCACCTAGACCTCCTTC 58.338 57.143 0.00 0.00 0.00 3.46
620 643 1.289530 CCCTCTCACCTAGACCTCCTT 59.710 57.143 0.00 0.00 0.00 3.36
621 644 0.930726 CCCTCTCACCTAGACCTCCT 59.069 60.000 0.00 0.00 0.00 3.69
622 645 0.632294 ACCCTCTCACCTAGACCTCC 59.368 60.000 0.00 0.00 0.00 4.30
623 646 1.686741 CCACCCTCTCACCTAGACCTC 60.687 61.905 0.00 0.00 0.00 3.85
624 647 0.336737 CCACCCTCTCACCTAGACCT 59.663 60.000 0.00 0.00 0.00 3.85
625 648 0.041386 ACCACCCTCTCACCTAGACC 59.959 60.000 0.00 0.00 0.00 3.85
626 649 1.187087 CACCACCCTCTCACCTAGAC 58.813 60.000 0.00 0.00 0.00 2.59
627 650 0.041238 CCACCACCCTCTCACCTAGA 59.959 60.000 0.00 0.00 0.00 2.43
628 651 1.617947 GCCACCACCCTCTCACCTAG 61.618 65.000 0.00 0.00 0.00 3.02
629 652 1.612442 GCCACCACCCTCTCACCTA 60.612 63.158 0.00 0.00 0.00 3.08
630 653 2.930562 GCCACCACCCTCTCACCT 60.931 66.667 0.00 0.00 0.00 4.00
631 654 4.035102 GGCCACCACCCTCTCACC 62.035 72.222 0.00 0.00 0.00 4.02
652 675 3.866582 CTGGACATCCTCCCGGCC 61.867 72.222 0.00 0.00 38.49 6.13
653 676 3.083997 ACTGGACATCCTCCCGGC 61.084 66.667 0.00 0.00 38.49 6.13
654 677 2.786495 CGACTGGACATCCTCCCGG 61.786 68.421 0.00 0.00 38.49 5.73
655 678 1.109920 ATCGACTGGACATCCTCCCG 61.110 60.000 0.00 0.44 38.49 5.14
656 679 0.390860 CATCGACTGGACATCCTCCC 59.609 60.000 0.00 0.00 38.49 4.30
657 680 3.976339 CATCGACTGGACATCCTCC 57.024 57.895 0.00 0.00 39.97 4.30
666 689 3.402681 ACTGCCCCCATCGACTGG 61.403 66.667 6.85 6.85 45.51 4.00
667 690 2.124983 CACTGCCCCCATCGACTG 60.125 66.667 0.00 0.00 0.00 3.51
668 691 4.101448 GCACTGCCCCCATCGACT 62.101 66.667 0.00 0.00 0.00 4.18
691 714 1.515952 CTTCTCTCTCCACGCGCAG 60.516 63.158 5.73 2.42 0.00 5.18
692 715 2.568612 CTTCTCTCTCCACGCGCA 59.431 61.111 5.73 0.00 0.00 6.09
693 716 2.202676 CCTTCTCTCTCCACGCGC 60.203 66.667 5.73 0.00 0.00 6.86
694 717 1.027255 TCTCCTTCTCTCTCCACGCG 61.027 60.000 3.53 3.53 0.00 6.01
695 718 0.454196 GTCTCCTTCTCTCTCCACGC 59.546 60.000 0.00 0.00 0.00 5.34
696 719 1.742831 CTGTCTCCTTCTCTCTCCACG 59.257 57.143 0.00 0.00 0.00 4.94
697 720 2.099405 CCTGTCTCCTTCTCTCTCCAC 58.901 57.143 0.00 0.00 0.00 4.02
698 721 1.618345 GCCTGTCTCCTTCTCTCTCCA 60.618 57.143 0.00 0.00 0.00 3.86
699 722 1.111277 GCCTGTCTCCTTCTCTCTCC 58.889 60.000 0.00 0.00 0.00 3.71
700 723 1.111277 GGCCTGTCTCCTTCTCTCTC 58.889 60.000 0.00 0.00 0.00 3.20
701 724 0.411452 TGGCCTGTCTCCTTCTCTCT 59.589 55.000 3.32 0.00 0.00 3.10
702 725 1.270907 TTGGCCTGTCTCCTTCTCTC 58.729 55.000 3.32 0.00 0.00 3.20
703 726 1.558756 CATTGGCCTGTCTCCTTCTCT 59.441 52.381 3.32 0.00 0.00 3.10
704 727 2.016096 GCATTGGCCTGTCTCCTTCTC 61.016 57.143 3.32 0.00 0.00 2.87
705 728 0.034670 GCATTGGCCTGTCTCCTTCT 60.035 55.000 3.32 0.00 0.00 2.85
706 729 1.372087 CGCATTGGCCTGTCTCCTTC 61.372 60.000 3.32 0.00 36.38 3.46
707 730 1.377725 CGCATTGGCCTGTCTCCTT 60.378 57.895 3.32 0.00 36.38 3.36
708 731 2.270205 CGCATTGGCCTGTCTCCT 59.730 61.111 3.32 0.00 36.38 3.69
709 732 3.512516 GCGCATTGGCCTGTCTCC 61.513 66.667 3.32 0.00 36.38 3.71
710 733 3.869272 CGCGCATTGGCCTGTCTC 61.869 66.667 8.75 0.00 36.38 3.36
732 755 2.509336 CTTGGCGAGTACTGGGCG 60.509 66.667 23.12 11.82 36.68 6.13
733 756 2.125106 CCTTGGCGAGTACTGGGC 60.125 66.667 22.24 22.24 0.00 5.36
734 757 0.970937 TCTCCTTGGCGAGTACTGGG 60.971 60.000 0.00 0.00 0.00 4.45
735 758 0.895530 TTCTCCTTGGCGAGTACTGG 59.104 55.000 0.00 0.00 0.00 4.00
736 759 2.743636 TTTCTCCTTGGCGAGTACTG 57.256 50.000 0.00 0.00 0.00 2.74
737 760 3.764237 TTTTTCTCCTTGGCGAGTACT 57.236 42.857 0.00 0.00 0.00 2.73
738 761 5.815740 TCATATTTTTCTCCTTGGCGAGTAC 59.184 40.000 0.12 0.00 0.00 2.73
739 762 5.984725 TCATATTTTTCTCCTTGGCGAGTA 58.015 37.500 0.12 0.00 0.00 2.59
740 763 4.843728 TCATATTTTTCTCCTTGGCGAGT 58.156 39.130 0.12 0.00 0.00 4.18
741 764 5.118990 TCTCATATTTTTCTCCTTGGCGAG 58.881 41.667 0.00 0.00 0.00 5.03
742 765 5.097742 TCTCATATTTTTCTCCTTGGCGA 57.902 39.130 0.00 0.00 0.00 5.54
743 766 5.355350 AGTTCTCATATTTTTCTCCTTGGCG 59.645 40.000 0.00 0.00 0.00 5.69
744 767 6.765915 AGTTCTCATATTTTTCTCCTTGGC 57.234 37.500 0.00 0.00 0.00 4.52
745 768 8.572855 AGAAGTTCTCATATTTTTCTCCTTGG 57.427 34.615 0.00 0.00 0.00 3.61
746 769 9.837525 CAAGAAGTTCTCATATTTTTCTCCTTG 57.162 33.333 5.70 0.00 0.00 3.61
788 811 6.873605 CAGTACTTCACCACTTCATTCATGTA 59.126 38.462 0.00 0.00 0.00 2.29
789 812 5.702670 CAGTACTTCACCACTTCATTCATGT 59.297 40.000 0.00 0.00 0.00 3.21
790 813 5.122869 CCAGTACTTCACCACTTCATTCATG 59.877 44.000 0.00 0.00 0.00 3.07
791 814 5.221925 ACCAGTACTTCACCACTTCATTCAT 60.222 40.000 0.00 0.00 0.00 2.57
792 815 4.102524 ACCAGTACTTCACCACTTCATTCA 59.897 41.667 0.00 0.00 0.00 2.57
793 816 4.642429 ACCAGTACTTCACCACTTCATTC 58.358 43.478 0.00 0.00 0.00 2.67
794 817 4.706842 ACCAGTACTTCACCACTTCATT 57.293 40.909 0.00 0.00 0.00 2.57
800 823 5.621781 GCTTCTACTACCAGTACTTCACCAC 60.622 48.000 0.00 0.00 0.00 4.16
802 825 4.438472 CGCTTCTACTACCAGTACTTCACC 60.438 50.000 0.00 0.00 0.00 4.02
804 827 4.330250 ACGCTTCTACTACCAGTACTTCA 58.670 43.478 0.00 0.00 0.00 3.02
819 842 5.120830 GTGAGAAATTGTGATGTACGCTTCT 59.879 40.000 0.00 0.00 31.00 2.85
820 843 5.316770 GTGAGAAATTGTGATGTACGCTTC 58.683 41.667 0.00 0.00 0.00 3.86
821 844 4.154195 GGTGAGAAATTGTGATGTACGCTT 59.846 41.667 0.00 0.00 0.00 4.68
822 845 3.684788 GGTGAGAAATTGTGATGTACGCT 59.315 43.478 0.00 0.00 0.00 5.07
823 846 3.684788 AGGTGAGAAATTGTGATGTACGC 59.315 43.478 0.00 0.00 0.00 4.42
824 847 4.929211 TGAGGTGAGAAATTGTGATGTACG 59.071 41.667 0.00 0.00 0.00 3.67
825 848 5.163814 GCTGAGGTGAGAAATTGTGATGTAC 60.164 44.000 0.00 0.00 0.00 2.90
826 849 4.937620 GCTGAGGTGAGAAATTGTGATGTA 59.062 41.667 0.00 0.00 0.00 2.29
832 855 3.213206 TGTGCTGAGGTGAGAAATTGT 57.787 42.857 0.00 0.00 0.00 2.71
847 870 4.513442 GGAAAAGGGAAAAGTTTTGTGCT 58.487 39.130 5.36 0.00 0.00 4.40
860 883 0.111639 CGAGGGTTTGGGAAAAGGGA 59.888 55.000 0.00 0.00 0.00 4.20
867 890 2.939261 GCGAGACGAGGGTTTGGGA 61.939 63.158 0.00 0.00 0.00 4.37
1220 1263 1.989430 CTTGAGGAAGACAGAGACGC 58.011 55.000 0.00 0.00 0.00 5.19
1322 1366 1.544825 TTGTGGCTCTTCGGAGGAGG 61.545 60.000 17.52 1.58 42.06 4.30
1554 1598 5.554350 AGAAAATACCTCCCCTTGAACCTTA 59.446 40.000 0.00 0.00 0.00 2.69
1611 1656 4.142271 CCATAGAACTCTGCTTCGAAGACT 60.142 45.833 28.95 15.28 34.32 3.24
1638 1683 3.590574 GCCCCCTTGTTCCCCAGT 61.591 66.667 0.00 0.00 0.00 4.00
1729 1774 8.675705 ACTAGCAAAATTTTGGCAAGTTTTAT 57.324 26.923 27.60 14.56 38.57 1.40
1850 1895 6.921914 TGCATGTCATCAATTGTTATGTCAA 58.078 32.000 5.13 0.00 0.00 3.18
2145 2190 4.911514 TGCCATCACATCATTCATTCTG 57.088 40.909 0.00 0.00 0.00 3.02
2294 2342 3.722147 CATCCACCTCCAAAGATCTACG 58.278 50.000 0.00 0.00 0.00 3.51
2479 3102 4.787551 ACAGGACAACCAATACAACAGAA 58.212 39.130 0.00 0.00 38.94 3.02
2585 3994 9.621629 TGTCCAAGAACTCAAAGTTTTATCTTA 57.378 29.630 0.00 0.00 38.80 2.10
2760 4956 8.208224 TCTCAAAGTAGTTTGGTTCAGTTCATA 58.792 33.333 20.32 0.00 42.98 2.15
3062 5276 8.762481 AATCCCTCCCTAAATTATGTACAAAC 57.238 34.615 0.00 0.00 0.00 2.93
3327 6207 3.251487 ACAAACTTAACCGAAATCACCCG 59.749 43.478 0.00 0.00 0.00 5.28
3393 6544 6.426587 AGATAAATATGGTCAAGCAGTGGTT 58.573 36.000 0.63 0.63 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.