Multiple sequence alignment - TraesCS5A01G038700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G038700 chr5A 100.000 2219 0 0 1 2219 35740810 35738592 0.000000e+00 4098.0
1 TraesCS5A01G038700 chr3B 97.951 732 14 1 1488 2219 533024551 533025281 0.000000e+00 1267.0
2 TraesCS5A01G038700 chr3B 81.818 121 17 5 504 624 31063694 31063809 1.810000e-16 97.1
3 TraesCS5A01G038700 chr4A 97.945 730 15 0 1490 2219 200171273 200172002 0.000000e+00 1266.0
4 TraesCS5A01G038700 chr3A 97.279 735 19 1 1485 2219 536887961 536887228 0.000000e+00 1245.0
5 TraesCS5A01G038700 chr3A 82.114 123 15 7 504 624 7083702 7083585 5.040000e-17 99.0
6 TraesCS5A01G038700 chr4B 97.394 729 19 0 1491 2219 186604811 186604083 0.000000e+00 1242.0
7 TraesCS5A01G038700 chr1B 97.003 734 21 1 1486 2219 52691726 52692458 0.000000e+00 1232.0
8 TraesCS5A01G038700 chr6B 96.982 729 21 1 1491 2219 478477605 478476878 0.000000e+00 1223.0
9 TraesCS5A01G038700 chr6B 96.467 736 24 2 1484 2219 47222717 47223450 0.000000e+00 1214.0
10 TraesCS5A01G038700 chr5D 96.735 735 21 2 1487 2219 450523548 450524281 0.000000e+00 1221.0
11 TraesCS5A01G038700 chr5D 90.013 791 33 21 628 1394 45125604 45124836 0.000000e+00 981.0
12 TraesCS5A01G038700 chr7A 96.849 730 22 1 1491 2219 669278463 669279192 0.000000e+00 1219.0
13 TraesCS5A01G038700 chr5B 86.131 858 46 24 628 1470 45031347 45030548 0.000000e+00 857.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G038700 chr5A 35738592 35740810 2218 True 4098 4098 100.000 1 2219 1 chr5A.!!$R1 2218
1 TraesCS5A01G038700 chr3B 533024551 533025281 730 False 1267 1267 97.951 1488 2219 1 chr3B.!!$F2 731
2 TraesCS5A01G038700 chr4A 200171273 200172002 729 False 1266 1266 97.945 1490 2219 1 chr4A.!!$F1 729
3 TraesCS5A01G038700 chr3A 536887228 536887961 733 True 1245 1245 97.279 1485 2219 1 chr3A.!!$R2 734
4 TraesCS5A01G038700 chr4B 186604083 186604811 728 True 1242 1242 97.394 1491 2219 1 chr4B.!!$R1 728
5 TraesCS5A01G038700 chr1B 52691726 52692458 732 False 1232 1232 97.003 1486 2219 1 chr1B.!!$F1 733
6 TraesCS5A01G038700 chr6B 478476878 478477605 727 True 1223 1223 96.982 1491 2219 1 chr6B.!!$R1 728
7 TraesCS5A01G038700 chr6B 47222717 47223450 733 False 1214 1214 96.467 1484 2219 1 chr6B.!!$F1 735
8 TraesCS5A01G038700 chr5D 450523548 450524281 733 False 1221 1221 96.735 1487 2219 1 chr5D.!!$F1 732
9 TraesCS5A01G038700 chr5D 45124836 45125604 768 True 981 981 90.013 628 1394 1 chr5D.!!$R1 766
10 TraesCS5A01G038700 chr7A 669278463 669279192 729 False 1219 1219 96.849 1491 2219 1 chr7A.!!$F1 728
11 TraesCS5A01G038700 chr5B 45030548 45031347 799 True 857 857 86.131 628 1470 1 chr5B.!!$R1 842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 354 0.037232 GTAACTGGCGCAGTCCTTCT 60.037 55.0 10.83 0.0 44.62 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1419 1445 0.830444 TGGAGAACCTACCACAGCGT 60.83 55.0 0.0 0.0 37.04 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 8.939201 TTGTAAGAAAATGCTCACAAAATTGA 57.061 26.923 0.00 0.00 0.00 2.57
56 57 9.545105 TTGTAAGAAAATGCTCACAAAATTGAT 57.455 25.926 0.00 0.00 0.00 2.57
57 58 9.545105 TGTAAGAAAATGCTCACAAAATTGATT 57.455 25.926 0.00 0.00 0.00 2.57
84 85 8.986039 GCTTTTGCGAAATTAGAAAAATTCAA 57.014 26.923 0.00 0.00 34.86 2.69
85 86 9.432077 GCTTTTGCGAAATTAGAAAAATTCAAA 57.568 25.926 0.00 0.00 34.86 2.69
223 224 8.880878 ACAAAACAAAAATGGTAGACAATACC 57.119 30.769 0.00 0.00 38.07 2.73
224 225 7.929245 ACAAAACAAAAATGGTAGACAATACCC 59.071 33.333 1.76 0.00 36.79 3.69
225 226 5.890424 ACAAAAATGGTAGACAATACCCG 57.110 39.130 1.76 0.00 36.79 5.28
226 227 4.703093 ACAAAAATGGTAGACAATACCCGG 59.297 41.667 0.00 0.00 36.79 5.73
227 228 4.579647 AAAATGGTAGACAATACCCGGT 57.420 40.909 0.00 0.00 36.79 5.28
228 229 3.832615 AATGGTAGACAATACCCGGTC 57.167 47.619 0.00 0.00 36.79 4.79
229 230 1.488390 TGGTAGACAATACCCGGTCC 58.512 55.000 0.00 0.00 36.79 4.46
230 231 1.273154 TGGTAGACAATACCCGGTCCA 60.273 52.381 0.00 0.00 36.79 4.02
231 232 1.411612 GGTAGACAATACCCGGTCCAG 59.588 57.143 0.00 0.00 34.58 3.86
232 233 1.411612 GTAGACAATACCCGGTCCAGG 59.588 57.143 0.00 0.00 34.58 4.45
233 234 0.252558 AGACAATACCCGGTCCAGGT 60.253 55.000 1.42 1.42 41.64 4.00
234 235 1.007479 AGACAATACCCGGTCCAGGTA 59.993 52.381 6.45 6.45 43.86 3.08
235 236 1.832998 GACAATACCCGGTCCAGGTAA 59.167 52.381 8.12 0.00 42.99 2.85
236 237 2.236893 GACAATACCCGGTCCAGGTAAA 59.763 50.000 8.12 0.00 42.99 2.01
237 238 2.026915 ACAATACCCGGTCCAGGTAAAC 60.027 50.000 8.12 0.00 42.99 2.01
238 239 1.206878 ATACCCGGTCCAGGTAAACC 58.793 55.000 8.12 0.00 42.99 3.27
239 240 0.178909 TACCCGGTCCAGGTAAACCA 60.179 55.000 1.03 0.00 36.92 3.67
240 241 1.298667 CCCGGTCCAGGTAAACCAG 59.701 63.158 0.00 0.00 38.89 4.00
241 242 1.196104 CCCGGTCCAGGTAAACCAGA 61.196 60.000 0.00 0.00 38.89 3.86
242 243 0.688487 CCGGTCCAGGTAAACCAGAA 59.312 55.000 1.26 0.00 38.89 3.02
243 244 1.072648 CCGGTCCAGGTAAACCAGAAA 59.927 52.381 1.26 0.00 38.89 2.52
244 245 2.148768 CGGTCCAGGTAAACCAGAAAC 58.851 52.381 1.26 0.00 38.89 2.78
245 246 2.148768 GGTCCAGGTAAACCAGAAACG 58.851 52.381 1.26 0.00 38.89 3.60
246 247 2.148768 GTCCAGGTAAACCAGAAACGG 58.851 52.381 1.26 0.00 38.89 4.44
247 248 2.048601 TCCAGGTAAACCAGAAACGGA 58.951 47.619 1.26 0.00 38.89 4.69
248 249 2.438763 TCCAGGTAAACCAGAAACGGAA 59.561 45.455 1.26 0.00 38.89 4.30
249 250 3.117963 TCCAGGTAAACCAGAAACGGAAA 60.118 43.478 1.26 0.00 38.89 3.13
250 251 3.633065 CCAGGTAAACCAGAAACGGAAAA 59.367 43.478 1.26 0.00 38.89 2.29
251 252 4.098196 CCAGGTAAACCAGAAACGGAAAAA 59.902 41.667 1.26 0.00 38.89 1.94
252 253 5.221362 CCAGGTAAACCAGAAACGGAAAAAT 60.221 40.000 1.26 0.00 38.89 1.82
253 254 6.016108 CCAGGTAAACCAGAAACGGAAAAATA 60.016 38.462 1.26 0.00 38.89 1.40
254 255 7.427214 CAGGTAAACCAGAAACGGAAAAATAA 58.573 34.615 1.26 0.00 38.89 1.40
255 256 7.921745 CAGGTAAACCAGAAACGGAAAAATAAA 59.078 33.333 1.26 0.00 38.89 1.40
256 257 7.922278 AGGTAAACCAGAAACGGAAAAATAAAC 59.078 33.333 1.26 0.00 38.89 2.01
257 258 6.815672 AAACCAGAAACGGAAAAATAAACG 57.184 33.333 0.00 0.00 0.00 3.60
258 259 5.503662 ACCAGAAACGGAAAAATAAACGT 57.496 34.783 0.00 0.00 41.88 3.99
265 266 4.292599 ACGGAAAAATAAACGTTGGAAGC 58.707 39.130 0.00 0.00 35.90 3.86
266 267 4.037089 ACGGAAAAATAAACGTTGGAAGCT 59.963 37.500 0.00 0.00 35.90 3.74
267 268 4.979815 CGGAAAAATAAACGTTGGAAGCTT 59.020 37.500 0.00 0.00 0.00 3.74
268 269 5.116528 CGGAAAAATAAACGTTGGAAGCTTC 59.883 40.000 18.54 18.54 0.00 3.86
269 270 6.213677 GGAAAAATAAACGTTGGAAGCTTCT 58.786 36.000 25.05 6.87 0.00 2.85
270 271 6.143919 GGAAAAATAAACGTTGGAAGCTTCTG 59.856 38.462 25.05 14.86 0.00 3.02
271 272 6.385649 AAAATAAACGTTGGAAGCTTCTGA 57.614 33.333 25.05 11.76 0.00 3.27
272 273 6.385649 AAATAAACGTTGGAAGCTTCTGAA 57.614 33.333 25.05 15.37 0.00 3.02
273 274 6.385649 AATAAACGTTGGAAGCTTCTGAAA 57.614 33.333 25.05 14.50 0.00 2.69
274 275 4.712122 AAACGTTGGAAGCTTCTGAAAA 57.288 36.364 25.05 12.22 0.00 2.29
275 276 3.692791 ACGTTGGAAGCTTCTGAAAAC 57.307 42.857 25.05 20.35 0.00 2.43
276 277 3.279434 ACGTTGGAAGCTTCTGAAAACT 58.721 40.909 25.05 11.51 0.00 2.66
277 278 4.448210 ACGTTGGAAGCTTCTGAAAACTA 58.552 39.130 25.05 2.55 0.00 2.24
278 279 4.511826 ACGTTGGAAGCTTCTGAAAACTAG 59.488 41.667 25.05 14.01 0.00 2.57
279 280 4.083802 CGTTGGAAGCTTCTGAAAACTAGG 60.084 45.833 25.05 7.06 0.00 3.02
280 281 4.974645 TGGAAGCTTCTGAAAACTAGGA 57.025 40.909 25.05 0.00 0.00 2.94
281 282 4.642429 TGGAAGCTTCTGAAAACTAGGAC 58.358 43.478 25.05 5.12 0.00 3.85
282 283 3.680458 GGAAGCTTCTGAAAACTAGGACG 59.320 47.826 25.05 0.00 0.00 4.79
283 284 4.557205 GAAGCTTCTGAAAACTAGGACGA 58.443 43.478 19.44 0.00 0.00 4.20
284 285 4.602340 AGCTTCTGAAAACTAGGACGAA 57.398 40.909 0.00 0.00 0.00 3.85
285 286 5.153950 AGCTTCTGAAAACTAGGACGAAT 57.846 39.130 0.00 0.00 0.00 3.34
286 287 5.172205 AGCTTCTGAAAACTAGGACGAATC 58.828 41.667 0.00 0.00 0.00 2.52
287 288 4.330347 GCTTCTGAAAACTAGGACGAATCC 59.670 45.833 0.00 0.00 46.69 3.01
295 296 3.113745 GGACGAATCCCGCTACGA 58.886 61.111 0.00 0.00 43.32 3.43
296 297 1.008767 GGACGAATCCCGCTACGAG 60.009 63.158 0.00 0.00 43.32 4.18
297 298 1.008767 GACGAATCCCGCTACGAGG 60.009 63.158 0.00 0.00 43.32 4.63
303 304 4.222847 CCCGCTACGAGGGGCTTC 62.223 72.222 10.99 0.00 46.03 3.86
304 305 3.458163 CCGCTACGAGGGGCTTCA 61.458 66.667 0.00 0.00 41.59 3.02
305 306 2.105128 CGCTACGAGGGGCTTCAG 59.895 66.667 0.00 0.00 0.00 3.02
306 307 2.501610 GCTACGAGGGGCTTCAGG 59.498 66.667 0.00 0.00 0.00 3.86
307 308 2.501610 CTACGAGGGGCTTCAGGC 59.498 66.667 0.00 0.00 40.90 4.85
308 309 3.432051 CTACGAGGGGCTTCAGGCG 62.432 68.421 0.00 0.00 42.94 5.52
310 311 2.842188 TACGAGGGGCTTCAGGCGTA 62.842 60.000 0.00 0.00 42.94 4.42
311 312 2.501610 GAGGGGCTTCAGGCGTAG 59.498 66.667 0.00 0.00 42.94 3.51
312 313 3.083997 AGGGGCTTCAGGCGTAGG 61.084 66.667 0.00 0.00 42.94 3.18
324 325 4.582760 CGTAGGCGCCAGTTAACA 57.417 55.556 31.54 0.66 0.00 2.41
325 326 2.369870 CGTAGGCGCCAGTTAACAG 58.630 57.895 31.54 6.74 0.00 3.16
326 327 0.108992 CGTAGGCGCCAGTTAACAGA 60.109 55.000 31.54 0.00 0.00 3.41
327 328 1.670674 CGTAGGCGCCAGTTAACAGAA 60.671 52.381 31.54 0.00 0.00 3.02
328 329 2.629051 GTAGGCGCCAGTTAACAGAAT 58.371 47.619 31.54 5.27 0.00 2.40
329 330 3.735820 CGTAGGCGCCAGTTAACAGAATA 60.736 47.826 31.54 4.10 0.00 1.75
330 331 2.906354 AGGCGCCAGTTAACAGAATAG 58.094 47.619 31.54 0.00 0.00 1.73
331 332 1.330829 GGCGCCAGTTAACAGAATAGC 59.669 52.381 24.80 5.45 0.00 2.97
332 333 2.006888 GCGCCAGTTAACAGAATAGCA 58.993 47.619 8.61 0.00 0.00 3.49
333 334 2.614057 GCGCCAGTTAACAGAATAGCAT 59.386 45.455 8.61 0.00 0.00 3.79
334 335 3.546815 GCGCCAGTTAACAGAATAGCATG 60.547 47.826 8.61 0.00 0.00 4.06
335 336 3.623060 CGCCAGTTAACAGAATAGCATGT 59.377 43.478 8.61 0.00 0.00 3.21
336 337 4.808895 CGCCAGTTAACAGAATAGCATGTA 59.191 41.667 8.61 0.00 0.00 2.29
337 338 5.293324 CGCCAGTTAACAGAATAGCATGTAA 59.707 40.000 8.61 0.00 0.00 2.41
338 339 6.487103 GCCAGTTAACAGAATAGCATGTAAC 58.513 40.000 8.61 0.00 0.00 2.50
339 340 6.316390 GCCAGTTAACAGAATAGCATGTAACT 59.684 38.462 8.61 0.00 0.00 2.24
340 341 7.677276 GCCAGTTAACAGAATAGCATGTAACTG 60.677 40.741 8.61 15.11 38.70 3.16
341 342 7.201644 CCAGTTAACAGAATAGCATGTAACTGG 60.202 40.741 21.78 21.78 43.97 4.00
342 343 6.316390 AGTTAACAGAATAGCATGTAACTGGC 59.684 38.462 8.61 0.00 29.85 4.85
343 344 3.198068 ACAGAATAGCATGTAACTGGCG 58.802 45.455 0.00 0.00 0.00 5.69
344 345 2.032549 CAGAATAGCATGTAACTGGCGC 60.033 50.000 0.00 0.00 0.00 6.53
345 346 1.939934 GAATAGCATGTAACTGGCGCA 59.060 47.619 10.83 0.00 0.00 6.09
346 347 1.586422 ATAGCATGTAACTGGCGCAG 58.414 50.000 10.83 7.58 37.52 5.18
348 349 1.021390 AGCATGTAACTGGCGCAGTC 61.021 55.000 10.83 0.95 44.62 3.51
349 350 1.982073 GCATGTAACTGGCGCAGTCC 61.982 60.000 10.83 6.25 44.62 3.85
350 351 0.391661 CATGTAACTGGCGCAGTCCT 60.392 55.000 10.83 0.00 44.62 3.85
351 352 0.324943 ATGTAACTGGCGCAGTCCTT 59.675 50.000 10.83 0.00 44.62 3.36
352 353 0.320421 TGTAACTGGCGCAGTCCTTC 60.320 55.000 10.83 3.83 44.62 3.46
353 354 0.037232 GTAACTGGCGCAGTCCTTCT 60.037 55.000 10.83 0.00 44.62 2.85
354 355 0.685097 TAACTGGCGCAGTCCTTCTT 59.315 50.000 10.83 0.00 44.62 2.52
355 356 0.603975 AACTGGCGCAGTCCTTCTTC 60.604 55.000 10.83 0.00 44.62 2.87
356 357 1.294780 CTGGCGCAGTCCTTCTTCT 59.705 57.895 10.83 0.00 0.00 2.85
357 358 1.004560 TGGCGCAGTCCTTCTTCTG 60.005 57.895 10.83 0.00 35.12 3.02
358 359 1.743252 GGCGCAGTCCTTCTTCTGG 60.743 63.158 10.83 0.00 32.94 3.86
359 360 2.394563 GCGCAGTCCTTCTTCTGGC 61.395 63.158 0.30 0.00 32.94 4.85
360 361 1.743252 CGCAGTCCTTCTTCTGGCC 60.743 63.158 0.00 0.00 32.94 5.36
361 362 1.682257 GCAGTCCTTCTTCTGGCCT 59.318 57.895 3.32 0.00 32.94 5.19
362 363 0.676151 GCAGTCCTTCTTCTGGCCTG 60.676 60.000 3.32 2.92 32.94 4.85
363 364 0.979665 CAGTCCTTCTTCTGGCCTGA 59.020 55.000 8.48 8.48 0.00 3.86
364 365 1.349026 CAGTCCTTCTTCTGGCCTGAA 59.651 52.381 22.23 22.23 0.00 3.02
365 366 2.026449 CAGTCCTTCTTCTGGCCTGAAT 60.026 50.000 23.59 6.09 0.00 2.57
366 367 3.198635 CAGTCCTTCTTCTGGCCTGAATA 59.801 47.826 23.59 14.99 0.00 1.75
367 368 4.043596 AGTCCTTCTTCTGGCCTGAATAT 58.956 43.478 23.59 0.84 0.00 1.28
368 369 4.476479 AGTCCTTCTTCTGGCCTGAATATT 59.524 41.667 23.59 5.05 0.00 1.28
369 370 5.667626 AGTCCTTCTTCTGGCCTGAATATTA 59.332 40.000 23.59 8.70 0.00 0.98
370 371 6.158695 AGTCCTTCTTCTGGCCTGAATATTAA 59.841 38.462 23.59 14.59 0.00 1.40
371 372 6.261158 GTCCTTCTTCTGGCCTGAATATTAAC 59.739 42.308 23.59 15.52 0.00 2.01
372 373 5.237344 CCTTCTTCTGGCCTGAATATTAACG 59.763 44.000 23.59 11.45 0.00 3.18
373 374 5.353394 TCTTCTGGCCTGAATATTAACGT 57.647 39.130 23.59 0.00 0.00 3.99
374 375 5.741011 TCTTCTGGCCTGAATATTAACGTT 58.259 37.500 23.59 5.88 0.00 3.99
375 376 5.584649 TCTTCTGGCCTGAATATTAACGTTG 59.415 40.000 23.59 9.50 0.00 4.10
376 377 4.839121 TCTGGCCTGAATATTAACGTTGT 58.161 39.130 11.99 1.90 0.00 3.32
377 378 4.634004 TCTGGCCTGAATATTAACGTTGTG 59.366 41.667 11.99 0.00 0.00 3.33
378 379 4.328536 TGGCCTGAATATTAACGTTGTGT 58.671 39.130 11.99 0.00 0.00 3.72
379 380 4.762765 TGGCCTGAATATTAACGTTGTGTT 59.237 37.500 11.99 4.16 44.78 3.32
380 381 5.092781 GGCCTGAATATTAACGTTGTGTTG 58.907 41.667 11.99 0.00 42.01 3.33
381 382 5.335348 GGCCTGAATATTAACGTTGTGTTGT 60.335 40.000 11.99 0.00 42.01 3.32
382 383 6.146898 GCCTGAATATTAACGTTGTGTTGTT 58.853 36.000 11.99 0.00 42.01 2.83
383 384 7.299586 GCCTGAATATTAACGTTGTGTTGTTA 58.700 34.615 11.99 0.00 42.01 2.41
384 385 7.966204 GCCTGAATATTAACGTTGTGTTGTTAT 59.034 33.333 11.99 0.00 42.01 1.89
385 386 9.834628 CCTGAATATTAACGTTGTGTTGTTATT 57.165 29.630 11.99 3.93 42.01 1.40
396 397 9.959775 ACGTTGTGTTGTTATTTTACATTTTTG 57.040 25.926 0.00 0.00 0.00 2.44
397 398 9.414834 CGTTGTGTTGTTATTTTACATTTTTGG 57.585 29.630 0.00 0.00 0.00 3.28
400 401 9.099454 TGTGTTGTTATTTTACATTTTTGGTCC 57.901 29.630 0.00 0.00 0.00 4.46
401 402 9.320352 GTGTTGTTATTTTACATTTTTGGTCCT 57.680 29.630 0.00 0.00 0.00 3.85
402 403 9.892130 TGTTGTTATTTTACATTTTTGGTCCTT 57.108 25.926 0.00 0.00 0.00 3.36
404 405 8.894768 TGTTATTTTACATTTTTGGTCCTTGG 57.105 30.769 0.00 0.00 0.00 3.61
405 406 7.934120 TGTTATTTTACATTTTTGGTCCTTGGG 59.066 33.333 0.00 0.00 0.00 4.12
406 407 6.755542 ATTTTACATTTTTGGTCCTTGGGA 57.244 33.333 0.00 0.00 0.00 4.37
407 408 6.561519 TTTTACATTTTTGGTCCTTGGGAA 57.438 33.333 0.00 0.00 31.38 3.97
408 409 6.755542 TTTACATTTTTGGTCCTTGGGAAT 57.244 33.333 0.00 0.00 31.38 3.01
409 410 7.857404 TTTACATTTTTGGTCCTTGGGAATA 57.143 32.000 0.00 0.00 31.38 1.75
410 411 8.442660 TTTACATTTTTGGTCCTTGGGAATAT 57.557 30.769 0.00 0.00 31.38 1.28
411 412 6.544928 ACATTTTTGGTCCTTGGGAATATC 57.455 37.500 0.00 0.00 31.38 1.63
412 413 6.263754 ACATTTTTGGTCCTTGGGAATATCT 58.736 36.000 0.00 0.00 31.38 1.98
413 414 6.730507 ACATTTTTGGTCCTTGGGAATATCTT 59.269 34.615 0.00 0.00 31.38 2.40
414 415 7.237471 ACATTTTTGGTCCTTGGGAATATCTTT 59.763 33.333 0.00 0.00 31.38 2.52
415 416 7.625498 TTTTTGGTCCTTGGGAATATCTTTT 57.375 32.000 0.00 0.00 31.38 2.27
416 417 7.625498 TTTTGGTCCTTGGGAATATCTTTTT 57.375 32.000 0.00 0.00 31.38 1.94
417 418 6.850752 TTGGTCCTTGGGAATATCTTTTTC 57.149 37.500 0.00 0.00 31.38 2.29
418 419 5.269189 TGGTCCTTGGGAATATCTTTTTCC 58.731 41.667 0.00 0.00 41.64 3.13
419 420 5.222442 TGGTCCTTGGGAATATCTTTTTCCA 60.222 40.000 4.96 0.00 43.72 3.53
420 421 5.899547 GGTCCTTGGGAATATCTTTTTCCAT 59.100 40.000 4.96 0.00 43.72 3.41
421 422 6.384015 GGTCCTTGGGAATATCTTTTTCCATT 59.616 38.462 4.96 0.00 43.72 3.16
422 423 7.092891 GGTCCTTGGGAATATCTTTTTCCATTT 60.093 37.037 4.96 0.00 43.72 2.32
423 424 7.765819 GTCCTTGGGAATATCTTTTTCCATTTG 59.234 37.037 4.96 0.00 43.72 2.32
424 425 7.677745 TCCTTGGGAATATCTTTTTCCATTTGA 59.322 33.333 4.96 0.00 43.72 2.69
425 426 8.320617 CCTTGGGAATATCTTTTTCCATTTGAA 58.679 33.333 4.96 0.00 43.72 2.69
426 427 9.723601 CTTGGGAATATCTTTTTCCATTTGAAA 57.276 29.630 4.96 0.00 43.72 2.69
438 439 6.806668 TTCCATTTGAAAAAGAAAGAGGGT 57.193 33.333 0.00 0.00 0.00 4.34
439 440 6.160576 TCCATTTGAAAAAGAAAGAGGGTG 57.839 37.500 0.00 0.00 0.00 4.61
440 441 5.660864 TCCATTTGAAAAAGAAAGAGGGTGT 59.339 36.000 0.00 0.00 0.00 4.16
441 442 6.836527 TCCATTTGAAAAAGAAAGAGGGTGTA 59.163 34.615 0.00 0.00 0.00 2.90
442 443 7.014230 TCCATTTGAAAAAGAAAGAGGGTGTAG 59.986 37.037 0.00 0.00 0.00 2.74
443 444 5.767816 TTGAAAAAGAAAGAGGGTGTAGC 57.232 39.130 0.00 0.00 0.00 3.58
444 445 5.048846 TGAAAAAGAAAGAGGGTGTAGCT 57.951 39.130 0.00 0.00 0.00 3.32
445 446 6.182507 TGAAAAAGAAAGAGGGTGTAGCTA 57.817 37.500 0.00 0.00 0.00 3.32
446 447 6.779860 TGAAAAAGAAAGAGGGTGTAGCTAT 58.220 36.000 0.00 0.00 0.00 2.97
447 448 7.913789 TGAAAAAGAAAGAGGGTGTAGCTATA 58.086 34.615 0.00 0.00 0.00 1.31
448 449 8.548877 TGAAAAAGAAAGAGGGTGTAGCTATAT 58.451 33.333 0.00 0.00 0.00 0.86
449 450 8.966069 AAAAAGAAAGAGGGTGTAGCTATATC 57.034 34.615 0.00 0.00 0.00 1.63
450 451 7.922699 AAAGAAAGAGGGTGTAGCTATATCT 57.077 36.000 0.00 0.00 0.00 1.98
451 452 7.922699 AAGAAAGAGGGTGTAGCTATATCTT 57.077 36.000 0.00 0.00 0.00 2.40
452 453 9.435570 AAAGAAAGAGGGTGTAGCTATATCTTA 57.564 33.333 0.00 0.00 0.00 2.10
453 454 8.644374 AGAAAGAGGGTGTAGCTATATCTTAG 57.356 38.462 0.00 0.00 0.00 2.18
454 455 8.228905 AGAAAGAGGGTGTAGCTATATCTTAGT 58.771 37.037 0.00 0.00 0.00 2.24
455 456 8.785184 AAAGAGGGTGTAGCTATATCTTAGTT 57.215 34.615 0.00 0.00 0.00 2.24
456 457 7.768807 AGAGGGTGTAGCTATATCTTAGTTG 57.231 40.000 0.00 0.00 0.00 3.16
457 458 7.527796 AGAGGGTGTAGCTATATCTTAGTTGA 58.472 38.462 0.00 0.00 0.00 3.18
458 459 7.449086 AGAGGGTGTAGCTATATCTTAGTTGAC 59.551 40.741 0.00 0.00 0.00 3.18
459 460 7.299134 AGGGTGTAGCTATATCTTAGTTGACT 58.701 38.462 0.00 0.00 0.00 3.41
460 461 7.231722 AGGGTGTAGCTATATCTTAGTTGACTG 59.768 40.741 0.00 0.00 0.00 3.51
461 462 7.230913 GGGTGTAGCTATATCTTAGTTGACTGA 59.769 40.741 0.00 0.00 0.00 3.41
462 463 8.293867 GGTGTAGCTATATCTTAGTTGACTGAG 58.706 40.741 0.00 0.00 0.00 3.35
463 464 9.058174 GTGTAGCTATATCTTAGTTGACTGAGA 57.942 37.037 7.91 7.91 41.83 3.27
464 465 9.800572 TGTAGCTATATCTTAGTTGACTGAGAT 57.199 33.333 18.59 18.59 46.72 2.75
476 477 9.996554 TTAGTTGACTGAGATTTAATCAAGTCA 57.003 29.630 25.76 25.76 45.45 3.41
481 482 9.809096 TGACTGAGATTTAATCAAGTCATAGTC 57.191 33.333 25.76 16.62 43.87 2.59
482 483 9.809096 GACTGAGATTTAATCAAGTCATAGTCA 57.191 33.333 23.73 10.07 41.30 3.41
526 527 9.810545 TGGTAAGAAAGTAAAATGAAAAACCTG 57.189 29.630 0.00 0.00 0.00 4.00
541 542 7.534282 TGAAAAACCTGAAAAGAAAATTTGGC 58.466 30.769 0.00 0.00 0.00 4.52
542 543 7.175641 TGAAAAACCTGAAAAGAAAATTTGGCA 59.824 29.630 0.00 0.00 0.00 4.92
543 544 6.435430 AAACCTGAAAAGAAAATTTGGCAC 57.565 33.333 0.00 0.00 0.00 5.01
544 545 5.096443 ACCTGAAAAGAAAATTTGGCACA 57.904 34.783 0.00 0.00 0.00 4.57
545 546 5.118286 ACCTGAAAAGAAAATTTGGCACAG 58.882 37.500 0.00 0.00 42.39 3.66
546 547 5.104982 ACCTGAAAAGAAAATTTGGCACAGA 60.105 36.000 0.00 0.00 42.39 3.41
547 548 5.993441 CCTGAAAAGAAAATTTGGCACAGAT 59.007 36.000 0.00 0.00 42.39 2.90
548 549 6.146673 CCTGAAAAGAAAATTTGGCACAGATC 59.853 38.462 0.00 0.00 42.39 2.75
549 550 6.819284 TGAAAAGAAAATTTGGCACAGATCT 58.181 32.000 0.00 0.00 42.39 2.75
550 551 7.274447 TGAAAAGAAAATTTGGCACAGATCTT 58.726 30.769 0.00 0.00 42.39 2.40
551 552 7.769970 TGAAAAGAAAATTTGGCACAGATCTTT 59.230 29.630 0.00 4.99 42.39 2.52
552 553 9.260002 GAAAAGAAAATTTGGCACAGATCTTTA 57.740 29.630 9.48 0.00 42.39 1.85
553 554 9.612066 AAAAGAAAATTTGGCACAGATCTTTAA 57.388 25.926 9.48 0.00 42.39 1.52
554 555 9.783081 AAAGAAAATTTGGCACAGATCTTTAAT 57.217 25.926 7.96 0.00 42.39 1.40
555 556 8.767478 AGAAAATTTGGCACAGATCTTTAATG 57.233 30.769 0.00 0.00 42.39 1.90
556 557 6.973229 AAATTTGGCACAGATCTTTAATGC 57.027 33.333 0.00 0.76 42.39 3.56
557 558 5.664294 ATTTGGCACAGATCTTTAATGCA 57.336 34.783 15.97 0.00 42.39 3.96
558 559 5.465532 TTTGGCACAGATCTTTAATGCAA 57.534 34.783 15.97 5.90 42.39 4.08
559 560 4.707030 TGGCACAGATCTTTAATGCAAG 57.293 40.909 15.97 0.00 38.05 4.01
560 561 4.334552 TGGCACAGATCTTTAATGCAAGA 58.665 39.130 15.97 0.00 38.05 3.02
561 562 4.951715 TGGCACAGATCTTTAATGCAAGAT 59.048 37.500 15.97 0.00 44.70 2.40
570 571 6.408858 TCTTTAATGCAAGATCTGACGAAC 57.591 37.500 0.00 0.00 0.00 3.95
571 572 5.931724 TCTTTAATGCAAGATCTGACGAACA 59.068 36.000 0.00 0.00 0.00 3.18
572 573 6.595326 TCTTTAATGCAAGATCTGACGAACAT 59.405 34.615 0.00 0.00 0.00 2.71
573 574 7.763985 TCTTTAATGCAAGATCTGACGAACATA 59.236 33.333 0.00 0.00 0.00 2.29
574 575 7.841915 TTAATGCAAGATCTGACGAACATAA 57.158 32.000 0.00 0.00 0.00 1.90
575 576 5.980698 ATGCAAGATCTGACGAACATAAG 57.019 39.130 0.00 0.00 0.00 1.73
576 577 3.618594 TGCAAGATCTGACGAACATAAGC 59.381 43.478 0.00 0.00 0.00 3.09
577 578 3.618594 GCAAGATCTGACGAACATAAGCA 59.381 43.478 0.00 0.00 0.00 3.91
578 579 4.272018 GCAAGATCTGACGAACATAAGCAT 59.728 41.667 0.00 0.00 0.00 3.79
579 580 5.735324 CAAGATCTGACGAACATAAGCATG 58.265 41.667 0.00 0.00 38.21 4.06
580 581 4.375272 AGATCTGACGAACATAAGCATGG 58.625 43.478 0.00 0.00 36.39 3.66
581 582 3.885724 TCTGACGAACATAAGCATGGA 57.114 42.857 0.00 0.00 36.39 3.41
582 583 3.521560 TCTGACGAACATAAGCATGGAC 58.478 45.455 0.00 0.00 36.39 4.02
583 584 3.195610 TCTGACGAACATAAGCATGGACT 59.804 43.478 0.00 0.00 36.39 3.85
584 585 3.261580 TGACGAACATAAGCATGGACTG 58.738 45.455 0.00 0.00 36.39 3.51
585 586 3.056179 TGACGAACATAAGCATGGACTGA 60.056 43.478 0.00 0.00 36.39 3.41
586 587 3.525537 ACGAACATAAGCATGGACTGAG 58.474 45.455 0.00 0.00 36.39 3.35
587 588 3.195610 ACGAACATAAGCATGGACTGAGA 59.804 43.478 0.00 0.00 36.39 3.27
588 589 3.553511 CGAACATAAGCATGGACTGAGAC 59.446 47.826 0.00 0.00 36.39 3.36
589 590 4.679106 CGAACATAAGCATGGACTGAGACT 60.679 45.833 0.00 0.00 36.39 3.24
590 591 4.833478 ACATAAGCATGGACTGAGACTT 57.167 40.909 0.00 0.00 36.39 3.01
591 592 5.939764 ACATAAGCATGGACTGAGACTTA 57.060 39.130 0.00 0.00 36.39 2.24
592 593 5.665459 ACATAAGCATGGACTGAGACTTAC 58.335 41.667 0.00 0.00 36.39 2.34
593 594 5.423610 ACATAAGCATGGACTGAGACTTACT 59.576 40.000 0.00 0.00 36.39 2.24
594 595 4.899352 AAGCATGGACTGAGACTTACTT 57.101 40.909 0.00 0.00 0.00 2.24
595 596 4.199432 AGCATGGACTGAGACTTACTTG 57.801 45.455 0.00 0.00 0.00 3.16
596 597 3.834813 AGCATGGACTGAGACTTACTTGA 59.165 43.478 0.00 0.00 0.00 3.02
597 598 4.081752 AGCATGGACTGAGACTTACTTGAG 60.082 45.833 0.00 0.00 0.00 3.02
598 599 4.322349 GCATGGACTGAGACTTACTTGAGT 60.322 45.833 0.00 0.00 0.00 3.41
599 600 5.406649 CATGGACTGAGACTTACTTGAGTC 58.593 45.833 0.00 0.00 45.05 3.36
609 610 6.484818 GACTTACTTGAGTCTTAGTCGACT 57.515 41.667 23.66 23.66 46.39 4.18
610 611 6.243811 ACTTACTTGAGTCTTAGTCGACTG 57.756 41.667 28.12 12.46 43.91 3.51
611 612 5.996513 ACTTACTTGAGTCTTAGTCGACTGA 59.003 40.000 28.12 19.13 43.91 3.41
612 613 6.148150 ACTTACTTGAGTCTTAGTCGACTGAG 59.852 42.308 26.80 26.80 43.91 3.35
613 614 4.643463 ACTTGAGTCTTAGTCGACTGAGA 58.357 43.478 30.05 30.05 43.91 3.27
614 615 5.250200 ACTTGAGTCTTAGTCGACTGAGAT 58.750 41.667 34.18 24.67 43.91 2.75
615 616 5.708230 ACTTGAGTCTTAGTCGACTGAGATT 59.292 40.000 34.18 31.06 43.91 2.40
616 617 6.207810 ACTTGAGTCTTAGTCGACTGAGATTT 59.792 38.462 34.18 26.65 43.91 2.17
617 618 7.390996 ACTTGAGTCTTAGTCGACTGAGATTTA 59.609 37.037 34.18 26.24 43.91 1.40
618 619 7.310072 TGAGTCTTAGTCGACTGAGATTTAG 57.690 40.000 34.18 17.08 43.91 1.85
619 620 6.126568 AGTCTTAGTCGACTGAGATTTAGC 57.873 41.667 34.18 23.58 42.39 3.09
620 621 5.648526 AGTCTTAGTCGACTGAGATTTAGCA 59.351 40.000 34.18 14.27 42.39 3.49
621 622 6.151312 AGTCTTAGTCGACTGAGATTTAGCAA 59.849 38.462 34.18 14.78 42.39 3.91
622 623 6.470877 GTCTTAGTCGACTGAGATTTAGCAAG 59.529 42.308 34.18 22.00 40.13 4.01
623 624 6.374613 TCTTAGTCGACTGAGATTTAGCAAGA 59.625 38.462 30.05 21.29 34.24 3.02
624 625 4.739195 AGTCGACTGAGATTTAGCAAGAC 58.261 43.478 19.30 0.00 0.00 3.01
625 626 3.860536 GTCGACTGAGATTTAGCAAGACC 59.139 47.826 8.70 0.00 0.00 3.85
626 627 2.854777 CGACTGAGATTTAGCAAGACCG 59.145 50.000 0.00 0.00 0.00 4.79
656 657 1.243902 TGTCCTTTTCCCGTTGCATC 58.756 50.000 0.00 0.00 0.00 3.91
714 715 0.737715 CACTCGGCAGAGCCAAGTAC 60.738 60.000 14.20 0.00 44.99 2.73
715 716 2.214181 ACTCGGCAGAGCCAAGTACG 62.214 60.000 14.20 0.00 44.93 3.67
768 772 0.951040 GGCTTCACCTCGACTGGTTG 60.951 60.000 0.00 0.00 38.45 3.77
809 813 2.746277 AAGGATGGCCACGCGAAC 60.746 61.111 15.93 0.15 36.29 3.95
869 875 3.114616 CCTGCGAGTCAAGCACGG 61.115 66.667 0.00 0.00 40.01 4.94
916 923 4.350225 ACGACCCTCTCACCTCTATATACA 59.650 45.833 0.00 0.00 0.00 2.29
917 924 4.696402 CGACCCTCTCACCTCTATATACAC 59.304 50.000 0.00 0.00 0.00 2.90
927 934 6.095021 TCACCTCTATATACACACACACTGAC 59.905 42.308 0.00 0.00 0.00 3.51
931 938 4.808414 ATATACACACACACTGACTGCT 57.192 40.909 0.00 0.00 0.00 4.24
933 940 1.372582 ACACACACACTGACTGCTTG 58.627 50.000 0.00 0.00 0.00 4.01
967 974 2.691409 GGATACTGTGGCTTGCTACA 57.309 50.000 11.10 11.10 0.00 2.74
968 975 2.280628 GGATACTGTGGCTTGCTACAC 58.719 52.381 7.70 1.83 38.08 2.90
969 976 2.093447 GGATACTGTGGCTTGCTACACT 60.093 50.000 7.70 2.63 38.39 3.55
970 977 3.600388 GATACTGTGGCTTGCTACACTT 58.400 45.455 7.70 1.49 38.39 3.16
975 982 1.264288 GTGGCTTGCTACACTTCACAC 59.736 52.381 4.25 0.00 34.84 3.82
976 983 1.134250 TGGCTTGCTACACTTCACACA 60.134 47.619 0.00 0.00 0.00 3.72
993 1000 1.872952 CACAAGGAGTGCACAAATCGA 59.127 47.619 21.04 0.00 42.15 3.59
994 1001 2.485426 CACAAGGAGTGCACAAATCGAT 59.515 45.455 21.04 0.00 42.15 3.59
1294 1312 2.289382 TGTGCATGATGGTGTACTCGTT 60.289 45.455 0.00 0.00 35.96 3.85
1295 1313 3.056465 TGTGCATGATGGTGTACTCGTTA 60.056 43.478 0.00 0.00 35.96 3.18
1357 1383 3.635373 TGGTTCTTCGTAGTTCTCACTGT 59.365 43.478 0.00 0.00 34.06 3.55
1364 1390 2.846550 CGTAGTTCTCACTGTATGCGTG 59.153 50.000 0.00 0.74 34.06 5.34
1400 1426 5.656416 TGAAACTGGTTCACTTTCCTTTGAT 59.344 36.000 3.54 0.00 41.47 2.57
1406 1432 6.706295 TGGTTCACTTTCCTTTGATTGTTTT 58.294 32.000 0.00 0.00 0.00 2.43
1419 1445 8.286800 CCTTTGATTGTTTTCATTCAGTACGTA 58.713 33.333 0.00 0.00 39.99 3.57
1422 1448 4.634349 TGTTTTCATTCAGTACGTACGC 57.366 40.909 19.49 0.00 0.00 4.42
1424 1450 4.149221 TGTTTTCATTCAGTACGTACGCTG 59.851 41.667 19.49 15.39 0.00 5.18
1438 1464 0.830444 ACGCTGTGGTAGGTTCTCCA 60.830 55.000 0.00 0.00 35.89 3.86
1439 1465 0.108615 CGCTGTGGTAGGTTCTCCAG 60.109 60.000 0.00 0.00 34.16 3.86
1615 1644 0.893447 ACTAAAGCCGCCGTCTAAGT 59.107 50.000 0.00 0.00 0.00 2.24
1894 1923 1.421485 CGCAAACATCTGAGGACGC 59.579 57.895 0.00 0.00 0.00 5.19
2089 2118 3.710722 CGCTCCACCTCCAGCCTT 61.711 66.667 0.00 0.00 31.37 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.545105 TCAATTTTGTGAGCATTTTCTTACAAT 57.455 25.926 2.72 0.00 40.61 2.71
30 31 8.939201 TCAATTTTGTGAGCATTTTCTTACAA 57.061 26.923 0.00 0.00 39.69 2.41
31 32 9.545105 AATCAATTTTGTGAGCATTTTCTTACA 57.455 25.926 0.00 0.00 31.83 2.41
34 35 7.858879 GCAAATCAATTTTGTGAGCATTTTCTT 59.141 29.630 0.63 0.00 45.41 2.52
35 36 7.227910 AGCAAATCAATTTTGTGAGCATTTTCT 59.772 29.630 0.63 0.00 45.41 2.52
36 37 7.357303 AGCAAATCAATTTTGTGAGCATTTTC 58.643 30.769 0.63 0.00 45.41 2.29
37 38 7.266922 AGCAAATCAATTTTGTGAGCATTTT 57.733 28.000 0.63 0.00 45.41 1.82
38 39 6.870971 AGCAAATCAATTTTGTGAGCATTT 57.129 29.167 0.63 0.00 45.41 2.32
39 40 6.870971 AAGCAAATCAATTTTGTGAGCATT 57.129 29.167 0.63 0.00 45.41 3.56
40 41 6.870971 AAAGCAAATCAATTTTGTGAGCAT 57.129 29.167 0.63 0.00 45.41 3.79
41 42 6.487960 CAAAAGCAAATCAATTTTGTGAGCA 58.512 32.000 0.00 0.00 45.41 4.26
42 43 5.397240 GCAAAAGCAAATCAATTTTGTGAGC 59.603 36.000 10.31 0.00 45.41 4.26
43 44 6.963017 GCAAAAGCAAATCAATTTTGTGAG 57.037 33.333 10.31 0.00 45.41 3.51
45 46 5.776850 CGCAAAAGCAAATCAATTTTGTG 57.223 34.783 10.31 9.31 45.41 3.33
46 47 5.731599 TCGCAAAAGCAAATCAATTTTGT 57.268 30.435 10.31 0.00 45.41 2.83
47 48 7.611821 ATTTCGCAAAAGCAAATCAATTTTG 57.388 28.000 5.49 5.49 46.22 2.44
48 49 9.384682 CTAATTTCGCAAAAGCAAATCAATTTT 57.615 25.926 0.00 0.00 0.00 1.82
49 50 8.772705 TCTAATTTCGCAAAAGCAAATCAATTT 58.227 25.926 0.00 0.00 0.00 1.82
50 51 8.309163 TCTAATTTCGCAAAAGCAAATCAATT 57.691 26.923 0.00 0.00 0.00 2.32
51 52 7.887996 TCTAATTTCGCAAAAGCAAATCAAT 57.112 28.000 0.00 0.00 0.00 2.57
52 53 7.706281 TTCTAATTTCGCAAAAGCAAATCAA 57.294 28.000 0.00 0.00 0.00 2.57
53 54 7.706281 TTTCTAATTTCGCAAAAGCAAATCA 57.294 28.000 0.00 0.00 0.00 2.57
54 55 8.986039 TTTTTCTAATTTCGCAAAAGCAAATC 57.014 26.923 0.00 0.00 0.00 2.17
55 56 9.949174 AATTTTTCTAATTTCGCAAAAGCAAAT 57.051 22.222 0.00 0.00 0.00 2.32
56 57 9.432077 GAATTTTTCTAATTTCGCAAAAGCAAA 57.568 25.926 0.00 0.00 0.00 3.68
57 58 8.607459 TGAATTTTTCTAATTTCGCAAAAGCAA 58.393 25.926 0.00 0.00 0.00 3.91
58 59 8.136057 TGAATTTTTCTAATTTCGCAAAAGCA 57.864 26.923 0.00 0.00 0.00 3.91
59 60 8.986039 TTGAATTTTTCTAATTTCGCAAAAGC 57.014 26.923 0.00 0.00 0.00 3.51
197 198 9.320352 GGTATTGTCTACCATTTTTGTTTTGTT 57.680 29.630 0.00 0.00 37.53 2.83
198 199 7.929245 GGGTATTGTCTACCATTTTTGTTTTGT 59.071 33.333 3.99 0.00 39.31 2.83
199 200 7.115663 CGGGTATTGTCTACCATTTTTGTTTTG 59.884 37.037 3.99 0.00 39.31 2.44
200 201 7.149307 CGGGTATTGTCTACCATTTTTGTTTT 58.851 34.615 3.99 0.00 39.31 2.43
201 202 6.294843 CCGGGTATTGTCTACCATTTTTGTTT 60.295 38.462 0.00 0.00 39.31 2.83
202 203 5.184287 CCGGGTATTGTCTACCATTTTTGTT 59.816 40.000 0.00 0.00 39.31 2.83
203 204 4.703093 CCGGGTATTGTCTACCATTTTTGT 59.297 41.667 0.00 0.00 39.31 2.83
204 205 4.703093 ACCGGGTATTGTCTACCATTTTTG 59.297 41.667 6.32 0.00 39.31 2.44
205 206 4.925836 ACCGGGTATTGTCTACCATTTTT 58.074 39.130 6.32 0.00 39.31 1.94
206 207 4.520179 GACCGGGTATTGTCTACCATTTT 58.480 43.478 6.32 0.00 39.31 1.82
207 208 3.118149 GGACCGGGTATTGTCTACCATTT 60.118 47.826 6.32 0.00 39.31 2.32
208 209 2.436911 GGACCGGGTATTGTCTACCATT 59.563 50.000 6.32 0.00 39.31 3.16
209 210 2.044758 GGACCGGGTATTGTCTACCAT 58.955 52.381 6.32 0.00 39.31 3.55
210 211 1.273154 TGGACCGGGTATTGTCTACCA 60.273 52.381 6.32 0.00 39.31 3.25
211 212 1.411612 CTGGACCGGGTATTGTCTACC 59.588 57.143 6.32 0.00 36.88 3.18
212 213 1.411612 CCTGGACCGGGTATTGTCTAC 59.588 57.143 11.72 0.00 0.00 2.59
213 214 1.007479 ACCTGGACCGGGTATTGTCTA 59.993 52.381 24.49 0.00 41.98 2.59
214 215 0.252558 ACCTGGACCGGGTATTGTCT 60.253 55.000 24.49 0.00 41.98 3.41
215 216 1.488390 TACCTGGACCGGGTATTGTC 58.512 55.000 26.03 0.00 41.98 3.18
216 217 1.955451 TTACCTGGACCGGGTATTGT 58.045 50.000 29.35 8.74 43.86 2.71
217 218 2.635714 GTTTACCTGGACCGGGTATTG 58.364 52.381 29.35 2.53 43.86 1.90
218 219 1.561076 GGTTTACCTGGACCGGGTATT 59.439 52.381 29.35 9.48 43.86 1.89
219 220 1.206878 GGTTTACCTGGACCGGGTAT 58.793 55.000 29.35 10.22 43.86 2.73
220 221 0.178909 TGGTTTACCTGGACCGGGTA 60.179 55.000 26.03 26.03 41.98 3.69
221 222 1.461849 TGGTTTACCTGGACCGGGT 60.462 57.895 28.26 28.26 46.08 5.28
222 223 1.196104 TCTGGTTTACCTGGACCGGG 61.196 60.000 18.66 18.66 41.65 5.73
223 224 0.688487 TTCTGGTTTACCTGGACCGG 59.312 55.000 0.00 0.00 42.51 5.28
224 225 2.148768 GTTTCTGGTTTACCTGGACCG 58.851 52.381 0.00 0.00 38.81 4.79
225 226 2.148768 CGTTTCTGGTTTACCTGGACC 58.851 52.381 0.00 0.00 35.87 4.46
226 227 2.148768 CCGTTTCTGGTTTACCTGGAC 58.851 52.381 0.00 5.09 35.87 4.02
227 228 2.048601 TCCGTTTCTGGTTTACCTGGA 58.951 47.619 0.00 0.00 35.87 3.86
228 229 2.554370 TCCGTTTCTGGTTTACCTGG 57.446 50.000 6.04 0.00 35.87 4.45
229 230 4.904253 TTTTCCGTTTCTGGTTTACCTG 57.096 40.909 0.00 0.00 36.82 4.00
230 231 7.585579 TTATTTTTCCGTTTCTGGTTTACCT 57.414 32.000 0.00 0.00 36.82 3.08
231 232 7.096518 CGTTTATTTTTCCGTTTCTGGTTTACC 60.097 37.037 0.00 0.00 0.00 2.85
232 233 7.431960 ACGTTTATTTTTCCGTTTCTGGTTTAC 59.568 33.333 0.00 0.00 0.00 2.01
233 234 7.479150 ACGTTTATTTTTCCGTTTCTGGTTTA 58.521 30.769 0.00 0.00 0.00 2.01
234 235 6.331845 ACGTTTATTTTTCCGTTTCTGGTTT 58.668 32.000 0.00 0.00 0.00 3.27
235 236 5.893687 ACGTTTATTTTTCCGTTTCTGGTT 58.106 33.333 0.00 0.00 0.00 3.67
236 237 5.503662 ACGTTTATTTTTCCGTTTCTGGT 57.496 34.783 0.00 0.00 0.00 4.00
237 238 5.174216 CCAACGTTTATTTTTCCGTTTCTGG 59.826 40.000 0.00 0.00 41.14 3.86
238 239 5.972382 TCCAACGTTTATTTTTCCGTTTCTG 59.028 36.000 0.00 0.00 41.14 3.02
239 240 6.134040 TCCAACGTTTATTTTTCCGTTTCT 57.866 33.333 0.00 0.00 41.14 2.52
240 241 6.560799 GCTTCCAACGTTTATTTTTCCGTTTC 60.561 38.462 0.00 0.00 41.14 2.78
241 242 5.232626 GCTTCCAACGTTTATTTTTCCGTTT 59.767 36.000 0.00 0.00 41.14 3.60
242 243 4.741185 GCTTCCAACGTTTATTTTTCCGTT 59.259 37.500 0.00 0.00 43.58 4.44
243 244 4.037089 AGCTTCCAACGTTTATTTTTCCGT 59.963 37.500 0.00 0.00 34.56 4.69
244 245 4.542735 AGCTTCCAACGTTTATTTTTCCG 58.457 39.130 0.00 0.00 0.00 4.30
245 246 6.143919 CAGAAGCTTCCAACGTTTATTTTTCC 59.856 38.462 22.81 0.00 0.00 3.13
246 247 6.915843 TCAGAAGCTTCCAACGTTTATTTTTC 59.084 34.615 22.81 0.00 0.00 2.29
247 248 6.801575 TCAGAAGCTTCCAACGTTTATTTTT 58.198 32.000 22.81 0.00 0.00 1.94
248 249 6.385649 TCAGAAGCTTCCAACGTTTATTTT 57.614 33.333 22.81 0.00 0.00 1.82
249 250 6.385649 TTCAGAAGCTTCCAACGTTTATTT 57.614 33.333 22.81 0.00 0.00 1.40
250 251 6.385649 TTTCAGAAGCTTCCAACGTTTATT 57.614 33.333 22.81 0.00 0.00 1.40
251 252 6.039382 AGTTTTCAGAAGCTTCCAACGTTTAT 59.961 34.615 22.81 0.00 0.00 1.40
252 253 5.355910 AGTTTTCAGAAGCTTCCAACGTTTA 59.644 36.000 22.81 0.00 0.00 2.01
253 254 4.157840 AGTTTTCAGAAGCTTCCAACGTTT 59.842 37.500 22.81 0.00 0.00 3.60
254 255 3.694566 AGTTTTCAGAAGCTTCCAACGTT 59.305 39.130 22.81 0.00 0.00 3.99
255 256 3.279434 AGTTTTCAGAAGCTTCCAACGT 58.721 40.909 22.81 0.59 0.00 3.99
256 257 3.971032 AGTTTTCAGAAGCTTCCAACG 57.029 42.857 22.81 9.38 0.00 4.10
257 258 5.049336 GTCCTAGTTTTCAGAAGCTTCCAAC 60.049 44.000 22.81 18.44 0.00 3.77
258 259 5.063880 GTCCTAGTTTTCAGAAGCTTCCAA 58.936 41.667 22.81 13.09 0.00 3.53
259 260 4.642429 GTCCTAGTTTTCAGAAGCTTCCA 58.358 43.478 22.81 7.24 0.00 3.53
260 261 3.680458 CGTCCTAGTTTTCAGAAGCTTCC 59.320 47.826 22.81 6.44 0.00 3.46
261 262 4.557205 TCGTCCTAGTTTTCAGAAGCTTC 58.443 43.478 19.11 19.11 0.00 3.86
262 263 4.602340 TCGTCCTAGTTTTCAGAAGCTT 57.398 40.909 0.00 0.00 0.00 3.74
263 264 4.602340 TTCGTCCTAGTTTTCAGAAGCT 57.398 40.909 0.00 0.00 0.00 3.74
264 265 4.330347 GGATTCGTCCTAGTTTTCAGAAGC 59.670 45.833 0.00 0.00 0.00 3.86
265 266 4.870991 GGGATTCGTCCTAGTTTTCAGAAG 59.129 45.833 0.00 0.00 0.00 2.85
266 267 4.619863 CGGGATTCGTCCTAGTTTTCAGAA 60.620 45.833 0.00 0.00 0.00 3.02
267 268 3.119245 CGGGATTCGTCCTAGTTTTCAGA 60.119 47.826 0.00 0.00 0.00 3.27
268 269 3.187700 CGGGATTCGTCCTAGTTTTCAG 58.812 50.000 0.00 0.00 0.00 3.02
269 270 2.675889 GCGGGATTCGTCCTAGTTTTCA 60.676 50.000 0.00 0.00 41.72 2.69
270 271 1.931841 GCGGGATTCGTCCTAGTTTTC 59.068 52.381 0.00 0.00 41.72 2.29
271 272 1.553704 AGCGGGATTCGTCCTAGTTTT 59.446 47.619 0.00 0.00 41.72 2.43
272 273 1.192428 AGCGGGATTCGTCCTAGTTT 58.808 50.000 0.00 0.00 41.72 2.66
273 274 1.680207 GTAGCGGGATTCGTCCTAGTT 59.320 52.381 0.00 0.00 41.72 2.24
274 275 1.316651 GTAGCGGGATTCGTCCTAGT 58.683 55.000 0.00 0.00 41.72 2.57
275 276 0.237761 CGTAGCGGGATTCGTCCTAG 59.762 60.000 0.00 0.00 41.72 3.02
276 277 0.179048 TCGTAGCGGGATTCGTCCTA 60.179 55.000 0.00 0.00 41.72 2.94
277 278 1.445716 CTCGTAGCGGGATTCGTCCT 61.446 60.000 0.00 0.00 41.72 3.85
278 279 1.008767 CTCGTAGCGGGATTCGTCC 60.009 63.158 0.00 0.00 41.72 4.79
279 280 1.008767 CCTCGTAGCGGGATTCGTC 60.009 63.158 0.00 0.00 41.72 4.20
280 281 3.117372 CCTCGTAGCGGGATTCGT 58.883 61.111 0.00 0.00 41.72 3.85
287 288 3.432051 CTGAAGCCCCTCGTAGCGG 62.432 68.421 0.00 0.00 0.00 5.52
288 289 2.105128 CTGAAGCCCCTCGTAGCG 59.895 66.667 0.00 0.00 0.00 4.26
289 290 2.501610 CCTGAAGCCCCTCGTAGC 59.498 66.667 0.00 0.00 0.00 3.58
290 291 2.501610 GCCTGAAGCCCCTCGTAG 59.498 66.667 0.00 0.00 34.35 3.51
291 292 2.842188 TACGCCTGAAGCCCCTCGTA 62.842 60.000 0.00 0.00 38.78 3.43
293 294 3.432051 CTACGCCTGAAGCCCCTCG 62.432 68.421 0.00 0.00 38.78 4.63
294 295 2.501610 CTACGCCTGAAGCCCCTC 59.498 66.667 0.00 0.00 38.78 4.30
295 296 3.083997 CCTACGCCTGAAGCCCCT 61.084 66.667 0.00 0.00 38.78 4.79
296 297 4.858680 GCCTACGCCTGAAGCCCC 62.859 72.222 0.00 0.00 38.78 5.80
307 308 0.108992 TCTGTTAACTGGCGCCTACG 60.109 55.000 29.70 18.09 44.07 3.51
308 309 2.088950 TTCTGTTAACTGGCGCCTAC 57.911 50.000 29.70 17.07 0.00 3.18
309 310 3.740141 GCTATTCTGTTAACTGGCGCCTA 60.740 47.826 29.70 13.31 0.00 3.93
310 311 2.906354 CTATTCTGTTAACTGGCGCCT 58.094 47.619 29.70 10.43 0.00 5.52
311 312 1.330829 GCTATTCTGTTAACTGGCGCC 59.669 52.381 22.73 22.73 0.00 6.53
312 313 2.006888 TGCTATTCTGTTAACTGGCGC 58.993 47.619 12.00 0.00 0.00 6.53
313 314 3.623060 ACATGCTATTCTGTTAACTGGCG 59.377 43.478 12.00 1.21 0.00 5.69
314 315 6.316390 AGTTACATGCTATTCTGTTAACTGGC 59.684 38.462 12.00 8.20 0.00 4.85
315 316 7.201644 CCAGTTACATGCTATTCTGTTAACTGG 60.202 40.741 21.78 21.78 42.43 4.00
316 317 7.677276 GCCAGTTACATGCTATTCTGTTAACTG 60.677 40.741 15.11 15.11 37.11 3.16
317 318 6.316390 GCCAGTTACATGCTATTCTGTTAACT 59.684 38.462 7.22 0.00 0.00 2.24
318 319 6.487103 GCCAGTTACATGCTATTCTGTTAAC 58.513 40.000 0.00 0.00 0.00 2.01
319 320 5.293324 CGCCAGTTACATGCTATTCTGTTAA 59.707 40.000 0.00 0.00 0.00 2.01
320 321 4.808895 CGCCAGTTACATGCTATTCTGTTA 59.191 41.667 0.00 0.00 0.00 2.41
321 322 3.623060 CGCCAGTTACATGCTATTCTGTT 59.377 43.478 0.00 0.00 0.00 3.16
322 323 3.198068 CGCCAGTTACATGCTATTCTGT 58.802 45.455 0.00 0.00 0.00 3.41
323 324 2.032549 GCGCCAGTTACATGCTATTCTG 60.033 50.000 0.00 0.00 0.00 3.02
324 325 2.213499 GCGCCAGTTACATGCTATTCT 58.787 47.619 0.00 0.00 0.00 2.40
325 326 1.939934 TGCGCCAGTTACATGCTATTC 59.060 47.619 4.18 0.00 0.00 1.75
326 327 1.942657 CTGCGCCAGTTACATGCTATT 59.057 47.619 4.18 0.00 0.00 1.73
327 328 1.134401 ACTGCGCCAGTTACATGCTAT 60.134 47.619 4.18 0.00 42.59 2.97
328 329 0.249120 ACTGCGCCAGTTACATGCTA 59.751 50.000 4.18 0.00 42.59 3.49
329 330 1.003355 ACTGCGCCAGTTACATGCT 60.003 52.632 4.18 0.00 42.59 3.79
330 331 1.425428 GACTGCGCCAGTTACATGC 59.575 57.895 4.18 0.00 45.44 4.06
331 332 0.391661 AGGACTGCGCCAGTTACATG 60.392 55.000 4.18 0.00 45.44 3.21
332 333 0.324943 AAGGACTGCGCCAGTTACAT 59.675 50.000 4.18 0.00 45.44 2.29
333 334 0.320421 GAAGGACTGCGCCAGTTACA 60.320 55.000 4.18 0.00 45.44 2.41
334 335 0.037232 AGAAGGACTGCGCCAGTTAC 60.037 55.000 4.18 6.27 45.44 2.50
335 336 0.685097 AAGAAGGACTGCGCCAGTTA 59.315 50.000 4.18 0.00 45.44 2.24
336 337 0.603975 GAAGAAGGACTGCGCCAGTT 60.604 55.000 4.18 0.00 45.44 3.16
338 339 1.018226 CAGAAGAAGGACTGCGCCAG 61.018 60.000 4.18 4.99 37.52 4.85
339 340 1.004560 CAGAAGAAGGACTGCGCCA 60.005 57.895 4.18 0.00 0.00 5.69
340 341 1.743252 CCAGAAGAAGGACTGCGCC 60.743 63.158 4.18 0.00 33.40 6.53
341 342 2.394563 GCCAGAAGAAGGACTGCGC 61.395 63.158 0.00 0.00 33.40 6.09
342 343 1.743252 GGCCAGAAGAAGGACTGCG 60.743 63.158 0.00 0.00 33.40 5.18
343 344 1.682257 AGGCCAGAAGAAGGACTGC 59.318 57.895 5.01 0.00 44.84 4.40
346 347 2.797177 ATTCAGGCCAGAAGAAGGAC 57.203 50.000 16.35 0.00 0.00 3.85
347 348 6.357367 GTTAATATTCAGGCCAGAAGAAGGA 58.643 40.000 16.35 0.00 0.00 3.36
348 349 5.237344 CGTTAATATTCAGGCCAGAAGAAGG 59.763 44.000 16.35 9.08 0.00 3.46
349 350 5.817816 ACGTTAATATTCAGGCCAGAAGAAG 59.182 40.000 16.35 5.51 0.00 2.85
350 351 5.741011 ACGTTAATATTCAGGCCAGAAGAA 58.259 37.500 16.35 9.29 0.00 2.52
351 352 5.353394 ACGTTAATATTCAGGCCAGAAGA 57.647 39.130 16.35 12.24 0.00 2.87
352 353 5.354234 ACAACGTTAATATTCAGGCCAGAAG 59.646 40.000 16.35 3.36 0.00 2.85
353 354 5.123186 CACAACGTTAATATTCAGGCCAGAA 59.877 40.000 13.54 13.54 0.00 3.02
354 355 4.634004 CACAACGTTAATATTCAGGCCAGA 59.366 41.667 5.01 0.00 0.00 3.86
355 356 4.394920 ACACAACGTTAATATTCAGGCCAG 59.605 41.667 5.01 0.00 0.00 4.85
356 357 4.328536 ACACAACGTTAATATTCAGGCCA 58.671 39.130 5.01 0.00 0.00 5.36
357 358 4.957759 ACACAACGTTAATATTCAGGCC 57.042 40.909 0.00 0.00 0.00 5.19
358 359 5.695818 ACAACACAACGTTAATATTCAGGC 58.304 37.500 0.00 0.00 35.52 4.85
359 360 9.834628 AATAACAACACAACGTTAATATTCAGG 57.165 29.630 0.00 0.00 35.52 3.86
370 371 9.959775 CAAAAATGTAAAATAACAACACAACGT 57.040 25.926 0.00 0.00 32.02 3.99
371 372 9.414834 CCAAAAATGTAAAATAACAACACAACG 57.585 29.630 0.00 0.00 32.02 4.10
374 375 9.099454 GGACCAAAAATGTAAAATAACAACACA 57.901 29.630 0.00 0.00 32.02 3.72
375 376 9.320352 AGGACCAAAAATGTAAAATAACAACAC 57.680 29.630 0.00 0.00 32.02 3.32
376 377 9.892130 AAGGACCAAAAATGTAAAATAACAACA 57.108 25.926 0.00 0.00 32.02 3.33
378 379 9.331282 CCAAGGACCAAAAATGTAAAATAACAA 57.669 29.630 0.00 0.00 32.02 2.83
379 380 7.934120 CCCAAGGACCAAAAATGTAAAATAACA 59.066 33.333 0.00 0.00 0.00 2.41
380 381 8.151596 TCCCAAGGACCAAAAATGTAAAATAAC 58.848 33.333 0.00 0.00 0.00 1.89
381 382 8.263854 TCCCAAGGACCAAAAATGTAAAATAA 57.736 30.769 0.00 0.00 0.00 1.40
382 383 7.857404 TCCCAAGGACCAAAAATGTAAAATA 57.143 32.000 0.00 0.00 0.00 1.40
383 384 6.755542 TCCCAAGGACCAAAAATGTAAAAT 57.244 33.333 0.00 0.00 0.00 1.82
384 385 6.561519 TTCCCAAGGACCAAAAATGTAAAA 57.438 33.333 0.00 0.00 0.00 1.52
385 386 6.755542 ATTCCCAAGGACCAAAAATGTAAA 57.244 33.333 0.00 0.00 0.00 2.01
386 387 7.898636 AGATATTCCCAAGGACCAAAAATGTAA 59.101 33.333 0.00 0.00 0.00 2.41
387 388 7.418378 AGATATTCCCAAGGACCAAAAATGTA 58.582 34.615 0.00 0.00 0.00 2.29
388 389 6.263754 AGATATTCCCAAGGACCAAAAATGT 58.736 36.000 0.00 0.00 0.00 2.71
389 390 6.796785 AGATATTCCCAAGGACCAAAAATG 57.203 37.500 0.00 0.00 0.00 2.32
390 391 7.813087 AAAGATATTCCCAAGGACCAAAAAT 57.187 32.000 0.00 0.00 0.00 1.82
391 392 7.625498 AAAAGATATTCCCAAGGACCAAAAA 57.375 32.000 0.00 0.00 0.00 1.94
392 393 7.256511 GGAAAAAGATATTCCCAAGGACCAAAA 60.257 37.037 0.00 0.00 40.41 2.44
393 394 6.212589 GGAAAAAGATATTCCCAAGGACCAAA 59.787 38.462 0.00 0.00 40.41 3.28
394 395 5.719563 GGAAAAAGATATTCCCAAGGACCAA 59.280 40.000 0.00 0.00 40.41 3.67
395 396 5.222442 TGGAAAAAGATATTCCCAAGGACCA 60.222 40.000 0.00 0.00 44.72 4.02
396 397 5.269189 TGGAAAAAGATATTCCCAAGGACC 58.731 41.667 3.06 0.00 44.72 4.46
397 398 7.423844 AATGGAAAAAGATATTCCCAAGGAC 57.576 36.000 3.06 0.00 44.72 3.85
398 399 7.677745 TCAAATGGAAAAAGATATTCCCAAGGA 59.322 33.333 3.06 0.00 44.72 3.36
399 400 7.850193 TCAAATGGAAAAAGATATTCCCAAGG 58.150 34.615 3.06 0.00 44.72 3.61
400 401 9.723601 TTTCAAATGGAAAAAGATATTCCCAAG 57.276 29.630 3.06 0.00 44.72 3.61
414 415 7.047271 CACCCTCTTTCTTTTTCAAATGGAAA 58.953 34.615 0.00 0.00 43.59 3.13
415 416 6.156083 ACACCCTCTTTCTTTTTCAAATGGAA 59.844 34.615 0.00 0.00 0.00 3.53
416 417 5.660864 ACACCCTCTTTCTTTTTCAAATGGA 59.339 36.000 0.00 0.00 0.00 3.41
417 418 5.917462 ACACCCTCTTTCTTTTTCAAATGG 58.083 37.500 0.00 0.00 0.00 3.16
418 419 6.642540 GCTACACCCTCTTTCTTTTTCAAATG 59.357 38.462 0.00 0.00 0.00 2.32
419 420 6.551227 AGCTACACCCTCTTTCTTTTTCAAAT 59.449 34.615 0.00 0.00 0.00 2.32
420 421 5.891551 AGCTACACCCTCTTTCTTTTTCAAA 59.108 36.000 0.00 0.00 0.00 2.69
421 422 5.445964 AGCTACACCCTCTTTCTTTTTCAA 58.554 37.500 0.00 0.00 0.00 2.69
422 423 5.048846 AGCTACACCCTCTTTCTTTTTCA 57.951 39.130 0.00 0.00 0.00 2.69
423 424 8.966069 ATATAGCTACACCCTCTTTCTTTTTC 57.034 34.615 0.00 0.00 0.00 2.29
424 425 8.773216 AGATATAGCTACACCCTCTTTCTTTTT 58.227 33.333 0.00 0.00 0.00 1.94
425 426 8.325477 AGATATAGCTACACCCTCTTTCTTTT 57.675 34.615 0.00 0.00 0.00 2.27
426 427 7.922699 AGATATAGCTACACCCTCTTTCTTT 57.077 36.000 0.00 0.00 0.00 2.52
427 428 7.922699 AAGATATAGCTACACCCTCTTTCTT 57.077 36.000 0.00 0.00 0.00 2.52
428 429 8.228905 ACTAAGATATAGCTACACCCTCTTTCT 58.771 37.037 0.00 0.00 0.00 2.52
429 430 8.411991 ACTAAGATATAGCTACACCCTCTTTC 57.588 38.462 0.00 0.00 0.00 2.62
430 431 8.643324 CAACTAAGATATAGCTACACCCTCTTT 58.357 37.037 0.00 0.00 0.00 2.52
431 432 8.005388 TCAACTAAGATATAGCTACACCCTCTT 58.995 37.037 0.00 3.30 0.00 2.85
432 433 7.449086 GTCAACTAAGATATAGCTACACCCTCT 59.551 40.741 0.00 0.00 0.00 3.69
433 434 7.449086 AGTCAACTAAGATATAGCTACACCCTC 59.551 40.741 0.00 0.00 0.00 4.30
434 435 7.231722 CAGTCAACTAAGATATAGCTACACCCT 59.768 40.741 0.00 0.00 0.00 4.34
435 436 7.230913 TCAGTCAACTAAGATATAGCTACACCC 59.769 40.741 0.00 0.00 0.00 4.61
436 437 8.167605 TCAGTCAACTAAGATATAGCTACACC 57.832 38.462 0.00 0.00 0.00 4.16
437 438 9.058174 TCTCAGTCAACTAAGATATAGCTACAC 57.942 37.037 0.00 0.00 0.00 2.90
438 439 9.800572 ATCTCAGTCAACTAAGATATAGCTACA 57.199 33.333 0.00 0.00 29.29 2.74
450 451 9.996554 TGACTTGATTAAATCTCAGTCAACTAA 57.003 29.630 11.66 0.00 42.29 2.24
455 456 9.809096 GACTATGACTTGATTAAATCTCAGTCA 57.191 33.333 14.81 14.81 45.62 3.41
456 457 9.809096 TGACTATGACTTGATTAAATCTCAGTC 57.191 33.333 0.00 0.00 39.11 3.51
500 501 9.810545 CAGGTTTTTCATTTTACTTTCTTACCA 57.189 29.630 0.00 0.00 0.00 3.25
515 516 8.190122 GCCAAATTTTCTTTTCAGGTTTTTCAT 58.810 29.630 0.00 0.00 0.00 2.57
516 517 7.175641 TGCCAAATTTTCTTTTCAGGTTTTTCA 59.824 29.630 0.00 0.00 0.00 2.69
517 518 7.484641 GTGCCAAATTTTCTTTTCAGGTTTTTC 59.515 33.333 0.00 0.00 0.00 2.29
518 519 7.040132 TGTGCCAAATTTTCTTTTCAGGTTTTT 60.040 29.630 0.00 0.00 0.00 1.94
519 520 6.432472 TGTGCCAAATTTTCTTTTCAGGTTTT 59.568 30.769 0.00 0.00 0.00 2.43
520 521 5.942826 TGTGCCAAATTTTCTTTTCAGGTTT 59.057 32.000 0.00 0.00 0.00 3.27
521 522 5.495640 TGTGCCAAATTTTCTTTTCAGGTT 58.504 33.333 0.00 0.00 0.00 3.50
522 523 5.096443 TGTGCCAAATTTTCTTTTCAGGT 57.904 34.783 0.00 0.00 0.00 4.00
523 524 5.358922 TCTGTGCCAAATTTTCTTTTCAGG 58.641 37.500 0.00 0.00 0.00 3.86
524 525 6.927381 AGATCTGTGCCAAATTTTCTTTTCAG 59.073 34.615 0.00 0.00 0.00 3.02
525 526 6.819284 AGATCTGTGCCAAATTTTCTTTTCA 58.181 32.000 0.00 0.00 0.00 2.69
526 527 7.719778 AAGATCTGTGCCAAATTTTCTTTTC 57.280 32.000 0.00 0.00 0.00 2.29
527 528 9.612066 TTAAAGATCTGTGCCAAATTTTCTTTT 57.388 25.926 12.83 2.45 34.84 2.27
528 529 9.783081 ATTAAAGATCTGTGCCAAATTTTCTTT 57.217 25.926 12.42 12.42 36.47 2.52
529 530 9.211485 CATTAAAGATCTGTGCCAAATTTTCTT 57.789 29.630 0.00 0.00 0.00 2.52
530 531 7.332678 GCATTAAAGATCTGTGCCAAATTTTCT 59.667 33.333 0.00 0.00 0.00 2.52
531 532 7.118101 TGCATTAAAGATCTGTGCCAAATTTTC 59.882 33.333 15.65 0.00 35.03 2.29
532 533 6.935771 TGCATTAAAGATCTGTGCCAAATTTT 59.064 30.769 15.65 0.00 35.03 1.82
533 534 6.465948 TGCATTAAAGATCTGTGCCAAATTT 58.534 32.000 15.65 0.00 35.03 1.82
534 535 6.040209 TGCATTAAAGATCTGTGCCAAATT 57.960 33.333 15.65 0.16 35.03 1.82
535 536 5.664294 TGCATTAAAGATCTGTGCCAAAT 57.336 34.783 15.65 0.00 35.03 2.32
536 537 5.243507 TCTTGCATTAAAGATCTGTGCCAAA 59.756 36.000 15.65 7.33 35.03 3.28
537 538 4.766373 TCTTGCATTAAAGATCTGTGCCAA 59.234 37.500 15.65 10.85 35.03 4.52
538 539 4.334552 TCTTGCATTAAAGATCTGTGCCA 58.665 39.130 15.65 7.72 35.03 4.92
539 540 4.970662 TCTTGCATTAAAGATCTGTGCC 57.029 40.909 15.65 4.03 35.03 5.01
547 548 5.931724 TGTTCGTCAGATCTTGCATTAAAGA 59.068 36.000 0.00 0.00 40.36 2.52
548 549 6.169419 TGTTCGTCAGATCTTGCATTAAAG 57.831 37.500 0.00 0.00 0.00 1.85
549 550 6.741992 ATGTTCGTCAGATCTTGCATTAAA 57.258 33.333 0.00 0.00 0.00 1.52
550 551 7.465916 GCTTATGTTCGTCAGATCTTGCATTAA 60.466 37.037 0.00 0.00 0.00 1.40
551 552 6.018751 GCTTATGTTCGTCAGATCTTGCATTA 60.019 38.462 0.00 0.00 0.00 1.90
552 553 5.220739 GCTTATGTTCGTCAGATCTTGCATT 60.221 40.000 0.00 0.00 0.00 3.56
553 554 4.272018 GCTTATGTTCGTCAGATCTTGCAT 59.728 41.667 0.00 0.00 0.00 3.96
554 555 3.618594 GCTTATGTTCGTCAGATCTTGCA 59.381 43.478 0.00 0.00 0.00 4.08
555 556 3.618594 TGCTTATGTTCGTCAGATCTTGC 59.381 43.478 0.00 0.00 0.00 4.01
556 557 5.277202 CCATGCTTATGTTCGTCAGATCTTG 60.277 44.000 0.00 0.00 0.00 3.02
557 558 4.813161 CCATGCTTATGTTCGTCAGATCTT 59.187 41.667 0.00 0.00 0.00 2.40
558 559 4.100035 TCCATGCTTATGTTCGTCAGATCT 59.900 41.667 0.00 0.00 0.00 2.75
559 560 4.210120 GTCCATGCTTATGTTCGTCAGATC 59.790 45.833 0.00 0.00 0.00 2.75
560 561 4.122776 GTCCATGCTTATGTTCGTCAGAT 58.877 43.478 0.00 0.00 0.00 2.90
561 562 3.195610 AGTCCATGCTTATGTTCGTCAGA 59.804 43.478 0.00 0.00 0.00 3.27
562 563 3.308053 CAGTCCATGCTTATGTTCGTCAG 59.692 47.826 0.00 0.00 0.00 3.51
563 564 3.056179 TCAGTCCATGCTTATGTTCGTCA 60.056 43.478 0.00 0.00 0.00 4.35
564 565 3.521560 TCAGTCCATGCTTATGTTCGTC 58.478 45.455 0.00 0.00 0.00 4.20
565 566 3.195610 TCTCAGTCCATGCTTATGTTCGT 59.804 43.478 0.00 0.00 0.00 3.85
566 567 3.553511 GTCTCAGTCCATGCTTATGTTCG 59.446 47.826 0.00 0.00 0.00 3.95
567 568 4.764172 AGTCTCAGTCCATGCTTATGTTC 58.236 43.478 0.00 0.00 0.00 3.18
568 569 4.833478 AGTCTCAGTCCATGCTTATGTT 57.167 40.909 0.00 0.00 0.00 2.71
569 570 4.833478 AAGTCTCAGTCCATGCTTATGT 57.167 40.909 0.00 0.00 0.00 2.29
570 571 5.911752 AGTAAGTCTCAGTCCATGCTTATG 58.088 41.667 0.00 0.00 0.00 1.90
571 572 6.155221 TCAAGTAAGTCTCAGTCCATGCTTAT 59.845 38.462 0.00 0.00 0.00 1.73
572 573 5.480422 TCAAGTAAGTCTCAGTCCATGCTTA 59.520 40.000 0.00 0.00 0.00 3.09
573 574 4.284490 TCAAGTAAGTCTCAGTCCATGCTT 59.716 41.667 0.00 0.00 0.00 3.91
574 575 3.834813 TCAAGTAAGTCTCAGTCCATGCT 59.165 43.478 0.00 0.00 0.00 3.79
575 576 4.180057 CTCAAGTAAGTCTCAGTCCATGC 58.820 47.826 0.00 0.00 0.00 4.06
576 577 5.398603 ACTCAAGTAAGTCTCAGTCCATG 57.601 43.478 0.00 0.00 0.00 3.66
577 578 5.652994 GACTCAAGTAAGTCTCAGTCCAT 57.347 43.478 0.00 0.00 42.01 3.41
597 598 5.881447 TGCTAAATCTCAGTCGACTAAGAC 58.119 41.667 20.77 8.32 41.23 3.01
598 599 6.374613 TCTTGCTAAATCTCAGTCGACTAAGA 59.625 38.462 20.63 20.63 0.00 2.10
599 600 6.470877 GTCTTGCTAAATCTCAGTCGACTAAG 59.529 42.308 19.57 14.47 0.00 2.18
600 601 6.323266 GTCTTGCTAAATCTCAGTCGACTAA 58.677 40.000 19.57 1.94 0.00 2.24
601 602 5.163642 GGTCTTGCTAAATCTCAGTCGACTA 60.164 44.000 19.57 2.81 0.00 2.59
602 603 4.381079 GGTCTTGCTAAATCTCAGTCGACT 60.381 45.833 13.58 13.58 0.00 4.18
603 604 3.860536 GGTCTTGCTAAATCTCAGTCGAC 59.139 47.826 7.70 7.70 0.00 4.20
604 605 3.427638 CGGTCTTGCTAAATCTCAGTCGA 60.428 47.826 0.00 0.00 0.00 4.20
605 606 2.854777 CGGTCTTGCTAAATCTCAGTCG 59.145 50.000 0.00 0.00 0.00 4.18
606 607 4.111375 TCGGTCTTGCTAAATCTCAGTC 57.889 45.455 0.00 0.00 0.00 3.51
607 608 4.537135 TTCGGTCTTGCTAAATCTCAGT 57.463 40.909 0.00 0.00 0.00 3.41
608 609 5.862924 TTTTCGGTCTTGCTAAATCTCAG 57.137 39.130 0.00 0.00 0.00 3.35
634 635 2.035632 TGCAACGGGAAAAGGACATTT 58.964 42.857 0.00 0.00 0.00 2.32
637 638 1.243902 GATGCAACGGGAAAAGGACA 58.756 50.000 0.00 0.00 0.00 4.02
638 639 1.200020 CTGATGCAACGGGAAAAGGAC 59.800 52.381 0.00 0.00 0.00 3.85
639 640 1.073125 TCTGATGCAACGGGAAAAGGA 59.927 47.619 2.62 0.00 0.00 3.36
640 641 1.533625 TCTGATGCAACGGGAAAAGG 58.466 50.000 2.62 0.00 0.00 3.11
642 643 2.690497 TGTTTCTGATGCAACGGGAAAA 59.310 40.909 13.42 0.31 0.00 2.29
646 647 0.109597 GCTGTTTCTGATGCAACGGG 60.110 55.000 2.62 0.00 30.97 5.28
656 657 5.927689 TGCCATTTATCTTTTGCTGTTTCTG 59.072 36.000 0.00 0.00 0.00 3.02
710 711 2.362397 CCAGAGTATGGTGATGCGTACT 59.638 50.000 0.00 0.00 44.91 2.73
826 832 3.120511 GGAGAAAGTTAGCTGCGTTTCAG 60.121 47.826 15.02 0.00 45.62 3.02
869 875 0.324645 ATCATTGGGTTGGGTGAGGC 60.325 55.000 0.00 0.00 0.00 4.70
916 923 0.392863 TGCAAGCAGTCAGTGTGTGT 60.393 50.000 0.00 0.00 0.00 3.72
917 924 0.734309 TTGCAAGCAGTCAGTGTGTG 59.266 50.000 0.00 0.00 0.00 3.82
933 940 0.875908 TATCCTCGCGATGCTGTTGC 60.876 55.000 10.36 0.00 40.20 4.17
955 962 1.264288 GTGTGAAGTGTAGCAAGCCAC 59.736 52.381 0.00 0.00 0.00 5.01
956 963 1.134250 TGTGTGAAGTGTAGCAAGCCA 60.134 47.619 0.00 0.00 0.00 4.75
957 964 1.593196 TGTGTGAAGTGTAGCAAGCC 58.407 50.000 0.00 0.00 0.00 4.35
958 965 2.031682 CCTTGTGTGAAGTGTAGCAAGC 60.032 50.000 0.00 0.00 33.94 4.01
959 966 3.466836 TCCTTGTGTGAAGTGTAGCAAG 58.533 45.455 0.00 0.00 34.74 4.01
960 967 3.118408 ACTCCTTGTGTGAAGTGTAGCAA 60.118 43.478 0.00 0.00 0.00 3.91
961 968 2.434336 ACTCCTTGTGTGAAGTGTAGCA 59.566 45.455 0.00 0.00 0.00 3.49
962 969 2.802816 CACTCCTTGTGTGAAGTGTAGC 59.197 50.000 0.00 0.00 41.53 3.58
975 982 2.222886 CGATCGATTTGTGCACTCCTTG 60.223 50.000 19.41 5.54 0.00 3.61
976 983 2.002586 CGATCGATTTGTGCACTCCTT 58.997 47.619 19.41 0.00 0.00 3.36
991 998 3.390017 CGGCAGCATCGACGATCG 61.390 66.667 14.88 14.88 42.10 3.69
1357 1383 1.069568 CAGAACAAAACCGCACGCATA 60.070 47.619 0.00 0.00 0.00 3.14
1364 1390 2.159296 ACCAGTTTCAGAACAAAACCGC 60.159 45.455 0.00 0.00 37.33 5.68
1400 1426 4.746115 AGCGTACGTACTGAATGAAAACAA 59.254 37.500 22.55 0.00 0.00 2.83
1406 1432 2.414957 CCACAGCGTACGTACTGAATGA 60.415 50.000 23.91 0.00 37.35 2.57
1419 1445 0.830444 TGGAGAACCTACCACAGCGT 60.830 55.000 0.00 0.00 37.04 5.07
1422 1448 2.248248 TGACTGGAGAACCTACCACAG 58.752 52.381 0.00 0.00 37.04 3.66
1424 1450 3.515901 AGAATGACTGGAGAACCTACCAC 59.484 47.826 0.00 0.00 37.04 4.16
1615 1644 4.406972 CCCTTCATCAACTGGATAGAGTGA 59.593 45.833 0.00 0.00 33.95 3.41
2089 2118 1.198094 TGCTCCCATCCCGTTCAGAA 61.198 55.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.