Multiple sequence alignment - TraesCS5A01G037600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G037600 chr5A 100.000 4120 0 0 1 4120 34907826 34911945 0.000000e+00 7609.0
1 TraesCS5A01G037600 chr5B 92.963 3297 156 35 859 4118 44226036 44222779 0.000000e+00 4734.0
2 TraesCS5A01G037600 chr5B 93.571 2271 100 20 1170 3416 43925270 43927518 0.000000e+00 3343.0
3 TraesCS5A01G037600 chr5B 96.677 632 16 3 1 629 44226762 44226133 0.000000e+00 1046.0
4 TraesCS5A01G037600 chr5B 95.261 633 24 4 1 629 43888459 43889089 0.000000e+00 998.0
5 TraesCS5A01G037600 chr5B 91.336 681 39 8 3442 4118 43927812 43928476 0.000000e+00 913.0
6 TraesCS5A01G037600 chr5B 89.972 359 22 6 780 1132 43889082 43889432 6.280000e-123 451.0
7 TraesCS5A01G037600 chr5B 87.500 152 19 0 628 779 546980227 546980076 4.230000e-40 176.0
8 TraesCS5A01G037600 chr5D 94.137 3019 128 21 780 3783 44493771 44496755 0.000000e+00 4549.0
9 TraesCS5A01G037600 chr5D 94.811 636 24 6 1 629 44493145 44493778 0.000000e+00 983.0
10 TraesCS5A01G037600 chr5D 80.533 750 130 14 2130 2871 3766517 3767258 2.780000e-156 562.0
11 TraesCS5A01G037600 chr5D 88.663 344 26 6 3779 4120 44496856 44497188 1.380000e-109 407.0
12 TraesCS5A01G037600 chr5D 89.726 146 11 3 634 776 443360630 443360774 2.530000e-42 183.0
13 TraesCS5A01G037600 chr5D 88.591 149 14 1 628 776 474212283 474212428 1.180000e-40 178.0
14 TraesCS5A01G037600 chr5D 83.815 173 26 2 1831 2002 3766293 3766464 3.300000e-36 163.0
15 TraesCS5A01G037600 chr5D 100.000 33 0 0 3594 3626 553674832 553674800 1.240000e-05 62.1
16 TraesCS5A01G037600 chr2B 84.112 856 102 22 1172 1995 41865833 41864980 0.000000e+00 797.0
17 TraesCS5A01G037600 chr2B 82.927 779 107 17 2130 2885 41864900 41864125 0.000000e+00 678.0
18 TraesCS5A01G037600 chr2B 81.258 779 117 20 2130 2885 41848003 41847231 1.640000e-168 603.0
19 TraesCS5A01G037600 chr2A 83.428 881 103 24 1162 2002 28809658 28808781 0.000000e+00 778.0
20 TraesCS5A01G037600 chr2A 82.345 776 113 16 2130 2885 28808722 28807951 0.000000e+00 652.0
21 TraesCS5A01G037600 chr2A 86.842 152 20 0 625 776 24347592 24347743 1.970000e-38 171.0
22 TraesCS5A01G037600 chr2D 87.869 610 71 1 1162 1768 26560179 26559570 0.000000e+00 713.0
23 TraesCS5A01G037600 chr2D 82.558 774 111 18 2130 2885 26559208 26558441 0.000000e+00 660.0
24 TraesCS5A01G037600 chr2D 97.297 37 0 1 3601 3636 5088945 5088909 1.240000e-05 62.1
25 TraesCS5A01G037600 chrUn 80.066 602 100 12 1181 1763 87285401 87286001 2.940000e-116 429.0
26 TraesCS5A01G037600 chrUn 87.000 100 13 0 3014 3113 87282478 87282379 3.370000e-21 113.0
27 TraesCS5A01G037600 chr7B 80.066 602 100 12 1181 1763 680269222 680268622 2.940000e-116 429.0
28 TraesCS5A01G037600 chr7B 81.609 87 13 3 3596 3679 149610252 149610338 7.390000e-08 69.4
29 TraesCS5A01G037600 chr3D 89.744 156 15 1 628 782 591203974 591203819 9.030000e-47 198.0
30 TraesCS5A01G037600 chr7A 90.066 151 14 1 630 779 28271993 28271843 1.170000e-45 195.0
31 TraesCS5A01G037600 chr7A 85.799 169 21 2 623 791 709548863 709549028 4.230000e-40 176.0
32 TraesCS5A01G037600 chr1A 89.189 148 15 1 630 776 503581357 503581504 2.530000e-42 183.0
33 TraesCS5A01G037600 chr1A 81.609 87 9 6 3600 3679 568391200 568391286 9.560000e-07 65.8
34 TraesCS5A01G037600 chr4A 87.013 154 19 1 624 776 18654639 18654486 5.480000e-39 172.0
35 TraesCS5A01G037600 chr7D 90.000 100 10 0 3014 3113 601123329 601123230 3.340000e-26 130.0
36 TraesCS5A01G037600 chr6A 97.143 35 1 0 3595 3629 563550631 563550665 4.450000e-05 60.2
37 TraesCS5A01G037600 chr4B 100.000 31 0 0 3636 3666 639127889 639127859 1.600000e-04 58.4
38 TraesCS5A01G037600 chr3B 90.476 42 4 0 3588 3629 596053707 596053666 5.750000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G037600 chr5A 34907826 34911945 4119 False 7609.000000 7609 100.0000 1 4120 1 chr5A.!!$F1 4119
1 TraesCS5A01G037600 chr5B 44222779 44226762 3983 True 2890.000000 4734 94.8200 1 4118 2 chr5B.!!$R2 4117
2 TraesCS5A01G037600 chr5B 43925270 43928476 3206 False 2128.000000 3343 92.4535 1170 4118 2 chr5B.!!$F2 2948
3 TraesCS5A01G037600 chr5B 43888459 43889432 973 False 724.500000 998 92.6165 1 1132 2 chr5B.!!$F1 1131
4 TraesCS5A01G037600 chr5D 44493145 44497188 4043 False 1979.666667 4549 92.5370 1 4120 3 chr5D.!!$F4 4119
5 TraesCS5A01G037600 chr5D 3766293 3767258 965 False 362.500000 562 82.1740 1831 2871 2 chr5D.!!$F3 1040
6 TraesCS5A01G037600 chr2B 41864125 41865833 1708 True 737.500000 797 83.5195 1172 2885 2 chr2B.!!$R2 1713
7 TraesCS5A01G037600 chr2B 41847231 41848003 772 True 603.000000 603 81.2580 2130 2885 1 chr2B.!!$R1 755
8 TraesCS5A01G037600 chr2A 28807951 28809658 1707 True 715.000000 778 82.8865 1162 2885 2 chr2A.!!$R1 1723
9 TraesCS5A01G037600 chr2D 26558441 26560179 1738 True 686.500000 713 85.2135 1162 2885 2 chr2D.!!$R2 1723
10 TraesCS5A01G037600 chrUn 87285401 87286001 600 False 429.000000 429 80.0660 1181 1763 1 chrUn.!!$F1 582
11 TraesCS5A01G037600 chr7B 680268622 680269222 600 True 429.000000 429 80.0660 1181 1763 1 chr7B.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 775 0.239347 CCGCTGCTATTTGGCATAGC 59.761 55.000 12.17 12.17 45.28 2.97 F
1160 1215 0.032017 ACCTCCGCTTCTCCAGGTAT 60.032 55.000 0.00 0.00 37.50 2.73 F
1217 1275 1.077716 GTGAGTGGGTATGGTGGCC 60.078 63.158 0.00 0.00 0.00 5.36 F
2452 2652 0.253113 TCACCCATGATGACCTCCCA 60.253 55.000 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2340 0.667792 GAAGACCGCGTTCAGCTTCT 60.668 55.0 6.39 0.0 45.59 2.85 R
2176 2371 0.695347 CCACCTTCTTCCTTGCCTCT 59.305 55.0 0.00 0.0 0.00 3.69 R
2805 3046 0.790866 GCAACTTCGCGAGCATGTTC 60.791 55.0 9.59 0.0 0.00 3.18 R
3365 3610 0.249657 GCGCACCCATTCAACCAAAA 60.250 50.0 0.30 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 43 3.525537 CATCGCTGATTGGTAAGTCAGT 58.474 45.455 4.53 0.00 42.91 3.41
154 161 6.761714 ACTCTAAATGTTGACAGTTTCGAAGT 59.238 34.615 1.98 0.00 35.62 3.01
155 162 7.280205 ACTCTAAATGTTGACAGTTTCGAAGTT 59.720 33.333 1.98 0.00 35.62 2.66
185 192 5.136828 ACACCAACATTTGTAGATCACCAA 58.863 37.500 0.00 0.00 0.00 3.67
193 200 4.713824 TTGTAGATCACCAACTACTCGG 57.286 45.455 0.00 0.00 39.46 4.63
204 211 2.191128 ACTACTCGGTACAGGTTCGT 57.809 50.000 0.00 0.00 0.00 3.85
218 225 5.280945 ACAGGTTCGTTTGTTGATGAAATG 58.719 37.500 0.00 0.00 0.00 2.32
231 238 7.596494 TGTTGATGAAATGGAATCTGAAACTC 58.404 34.615 0.00 0.00 0.00 3.01
648 663 9.908152 AATTTATCATAGTTTTAAATAGCCGGC 57.092 29.630 21.89 21.89 0.00 6.13
649 664 8.685838 TTTATCATAGTTTTAAATAGCCGGCT 57.314 30.769 34.85 34.85 0.00 5.52
650 665 9.781633 TTTATCATAGTTTTAAATAGCCGGCTA 57.218 29.630 36.88 36.88 0.00 3.93
651 666 9.953565 TTATCATAGTTTTAAATAGCCGGCTAT 57.046 29.630 37.79 37.79 40.63 2.97
653 668 8.997621 TCATAGTTTTAAATAGCCGGCTATAG 57.002 34.615 41.53 22.50 38.20 1.31
654 669 7.548075 TCATAGTTTTAAATAGCCGGCTATAGC 59.452 37.037 41.53 29.09 38.20 2.97
655 670 5.866207 AGTTTTAAATAGCCGGCTATAGCT 58.134 37.500 41.53 30.55 43.20 3.32
656 671 5.932883 AGTTTTAAATAGCCGGCTATAGCTC 59.067 40.000 41.53 28.58 40.56 4.09
657 672 5.740290 TTTAAATAGCCGGCTATAGCTCT 57.260 39.130 41.53 26.79 40.56 4.09
658 673 3.601443 AAATAGCCGGCTATAGCTCTG 57.399 47.619 41.53 13.61 40.56 3.35
659 674 0.820871 ATAGCCGGCTATAGCTCTGC 59.179 55.000 41.03 21.05 40.56 4.26
660 675 0.251386 TAGCCGGCTATAGCTCTGCT 60.251 55.000 32.24 27.03 43.41 4.24
661 676 0.251386 AGCCGGCTATAGCTCTGCTA 60.251 55.000 31.86 1.60 45.55 3.49
669 684 2.268022 TAGCTCTGCTATAGCCCGC 58.732 57.895 21.84 19.21 41.02 6.13
670 685 0.251386 TAGCTCTGCTATAGCCCGCT 60.251 55.000 25.64 25.64 41.02 5.52
671 686 0.251386 AGCTCTGCTATAGCCCGCTA 60.251 55.000 22.97 6.21 41.02 4.26
672 687 0.820871 GCTCTGCTATAGCCCGCTAT 59.179 55.000 21.84 13.46 41.58 2.97
673 688 2.025155 GCTCTGCTATAGCCCGCTATA 58.975 52.381 21.84 14.20 39.65 1.31
680 695 4.473477 CTATAGCCCGCTATAGCCTTTT 57.527 45.455 23.85 5.54 46.26 2.27
681 696 2.833631 TAGCCCGCTATAGCCTTTTC 57.166 50.000 19.00 4.36 37.91 2.29
682 697 0.837272 AGCCCGCTATAGCCTTTTCA 59.163 50.000 19.00 0.00 37.91 2.69
683 698 1.202698 AGCCCGCTATAGCCTTTTCAG 60.203 52.381 19.00 2.99 37.91 3.02
684 699 1.475213 GCCCGCTATAGCCTTTTCAGT 60.475 52.381 19.00 0.00 37.91 3.41
685 700 2.224209 GCCCGCTATAGCCTTTTCAGTA 60.224 50.000 19.00 0.00 37.91 2.74
686 701 3.654414 CCCGCTATAGCCTTTTCAGTAG 58.346 50.000 19.00 0.81 37.91 2.57
687 702 3.555168 CCCGCTATAGCCTTTTCAGTAGG 60.555 52.174 19.00 9.66 37.91 3.18
688 703 3.069729 CCGCTATAGCCTTTTCAGTAGGT 59.930 47.826 19.00 0.00 37.91 3.08
689 704 4.443034 CCGCTATAGCCTTTTCAGTAGGTT 60.443 45.833 19.00 0.00 37.91 3.50
690 705 4.745620 CGCTATAGCCTTTTCAGTAGGTTC 59.254 45.833 19.00 0.00 37.91 3.62
691 706 5.057819 GCTATAGCCTTTTCAGTAGGTTCC 58.942 45.833 14.13 0.00 35.13 3.62
692 707 2.881111 AGCCTTTTCAGTAGGTTCCC 57.119 50.000 0.00 0.00 35.13 3.97
693 708 1.003233 AGCCTTTTCAGTAGGTTCCCG 59.997 52.381 0.00 0.00 35.13 5.14
694 709 1.450025 CCTTTTCAGTAGGTTCCCGC 58.550 55.000 0.00 0.00 0.00 6.13
695 710 1.003233 CCTTTTCAGTAGGTTCCCGCT 59.997 52.381 0.00 0.00 0.00 5.52
696 711 2.235402 CCTTTTCAGTAGGTTCCCGCTA 59.765 50.000 0.00 0.00 0.00 4.26
697 712 3.307199 CCTTTTCAGTAGGTTCCCGCTAA 60.307 47.826 0.00 0.00 0.00 3.09
698 713 4.320870 CTTTTCAGTAGGTTCCCGCTAAA 58.679 43.478 0.00 0.00 0.00 1.85
699 714 4.563140 TTTCAGTAGGTTCCCGCTAAAT 57.437 40.909 0.00 0.00 0.00 1.40
700 715 3.536956 TCAGTAGGTTCCCGCTAAATG 57.463 47.619 0.00 0.00 0.00 2.32
701 716 2.169769 TCAGTAGGTTCCCGCTAAATGG 59.830 50.000 0.00 0.00 0.00 3.16
702 717 2.093128 CAGTAGGTTCCCGCTAAATGGT 60.093 50.000 0.00 0.00 0.00 3.55
703 718 2.169978 AGTAGGTTCCCGCTAAATGGTC 59.830 50.000 0.00 0.00 0.00 4.02
704 719 1.286248 AGGTTCCCGCTAAATGGTCT 58.714 50.000 0.00 0.00 0.00 3.85
705 720 1.209747 AGGTTCCCGCTAAATGGTCTC 59.790 52.381 0.00 0.00 0.00 3.36
706 721 1.065709 GGTTCCCGCTAAATGGTCTCA 60.066 52.381 0.00 0.00 0.00 3.27
707 722 2.421529 GGTTCCCGCTAAATGGTCTCAT 60.422 50.000 0.00 0.00 34.56 2.90
708 723 2.614057 GTTCCCGCTAAATGGTCTCATG 59.386 50.000 0.00 0.00 33.18 3.07
709 724 1.837439 TCCCGCTAAATGGTCTCATGT 59.163 47.619 0.00 0.00 33.18 3.21
710 725 3.035363 TCCCGCTAAATGGTCTCATGTA 58.965 45.455 0.00 0.00 33.18 2.29
711 726 3.131396 CCCGCTAAATGGTCTCATGTAC 58.869 50.000 0.00 0.00 33.18 2.90
712 727 3.431626 CCCGCTAAATGGTCTCATGTACA 60.432 47.826 0.00 0.00 33.18 2.90
713 728 4.188462 CCGCTAAATGGTCTCATGTACAA 58.812 43.478 0.00 0.00 33.18 2.41
714 729 4.634004 CCGCTAAATGGTCTCATGTACAAA 59.366 41.667 0.00 0.00 33.18 2.83
715 730 5.296780 CCGCTAAATGGTCTCATGTACAAAT 59.703 40.000 0.00 0.00 33.18 2.32
716 731 6.481976 CCGCTAAATGGTCTCATGTACAAATA 59.518 38.462 0.00 0.00 33.18 1.40
717 732 7.307396 CCGCTAAATGGTCTCATGTACAAATAG 60.307 40.741 0.00 0.00 33.18 1.73
718 733 7.355778 GCTAAATGGTCTCATGTACAAATAGC 58.644 38.462 0.00 2.57 33.18 2.97
719 734 6.699575 AAATGGTCTCATGTACAAATAGCC 57.300 37.500 0.00 0.85 33.18 3.93
720 735 4.150897 TGGTCTCATGTACAAATAGCCC 57.849 45.455 0.00 0.00 0.00 5.19
721 736 3.131396 GGTCTCATGTACAAATAGCCCG 58.869 50.000 0.00 0.00 0.00 6.13
722 737 2.544267 GTCTCATGTACAAATAGCCCGC 59.456 50.000 0.00 0.00 0.00 6.13
723 738 2.434336 TCTCATGTACAAATAGCCCGCT 59.566 45.455 0.00 0.00 0.00 5.52
724 739 3.639561 TCTCATGTACAAATAGCCCGCTA 59.360 43.478 0.00 0.00 0.00 4.26
725 740 4.283467 TCTCATGTACAAATAGCCCGCTAT 59.717 41.667 0.00 3.31 40.63 2.97
726 741 5.479027 TCTCATGTACAAATAGCCCGCTATA 59.521 40.000 9.56 0.00 38.20 1.31
727 742 5.720202 TCATGTACAAATAGCCCGCTATAG 58.280 41.667 9.56 8.22 38.20 1.31
728 743 3.921677 TGTACAAATAGCCCGCTATAGC 58.078 45.455 15.09 15.09 38.20 2.97
729 744 3.576982 TGTACAAATAGCCCGCTATAGCT 59.423 43.478 21.98 6.31 43.20 3.32
730 745 3.045601 ACAAATAGCCCGCTATAGCTG 57.954 47.619 21.98 15.59 40.28 4.24
731 746 2.632996 ACAAATAGCCCGCTATAGCTGA 59.367 45.455 21.98 0.99 40.28 4.26
732 747 3.261897 ACAAATAGCCCGCTATAGCTGAT 59.738 43.478 21.98 13.94 40.28 2.90
733 748 4.256920 CAAATAGCCCGCTATAGCTGATT 58.743 43.478 21.98 9.01 40.28 2.57
734 749 4.559862 AATAGCCCGCTATAGCTGATTT 57.440 40.909 21.98 5.05 40.28 2.17
735 750 2.938956 AGCCCGCTATAGCTGATTTT 57.061 45.000 21.98 0.87 38.11 1.82
736 751 5.677319 ATAGCCCGCTATAGCTGATTTTA 57.323 39.130 21.98 7.82 40.28 1.52
737 752 4.351874 AGCCCGCTATAGCTGATTTTAA 57.648 40.909 21.98 0.00 38.11 1.52
738 753 4.319177 AGCCCGCTATAGCTGATTTTAAG 58.681 43.478 21.98 3.56 38.11 1.85
739 754 3.437049 GCCCGCTATAGCTGATTTTAAGG 59.563 47.826 21.98 11.98 39.32 2.69
740 755 4.642429 CCCGCTATAGCTGATTTTAAGGT 58.358 43.478 21.98 0.00 39.32 3.50
741 756 4.691216 CCCGCTATAGCTGATTTTAAGGTC 59.309 45.833 21.98 0.00 39.32 3.85
742 757 4.691216 CCGCTATAGCTGATTTTAAGGTCC 59.309 45.833 21.98 0.00 39.32 4.46
743 758 4.386049 CGCTATAGCTGATTTTAAGGTCCG 59.614 45.833 21.98 0.00 39.32 4.79
744 759 4.152580 GCTATAGCTGATTTTAAGGTCCGC 59.847 45.833 17.75 0.00 38.21 5.54
745 760 2.789409 AGCTGATTTTAAGGTCCGCT 57.211 45.000 0.00 3.39 31.33 5.52
746 761 2.359900 AGCTGATTTTAAGGTCCGCTG 58.640 47.619 7.11 0.00 34.32 5.18
747 762 1.202188 GCTGATTTTAAGGTCCGCTGC 60.202 52.381 0.00 0.00 0.00 5.25
748 763 2.359900 CTGATTTTAAGGTCCGCTGCT 58.640 47.619 0.00 0.00 0.00 4.24
749 764 3.531538 CTGATTTTAAGGTCCGCTGCTA 58.468 45.455 0.00 0.00 0.00 3.49
750 765 4.130118 CTGATTTTAAGGTCCGCTGCTAT 58.870 43.478 0.00 0.00 0.00 2.97
751 766 4.523083 TGATTTTAAGGTCCGCTGCTATT 58.477 39.130 0.00 0.00 0.00 1.73
752 767 4.947388 TGATTTTAAGGTCCGCTGCTATTT 59.053 37.500 0.00 0.00 0.00 1.40
753 768 4.695217 TTTTAAGGTCCGCTGCTATTTG 57.305 40.909 0.00 0.00 0.00 2.32
754 769 2.325583 TAAGGTCCGCTGCTATTTGG 57.674 50.000 0.00 0.00 0.00 3.28
755 770 1.032114 AAGGTCCGCTGCTATTTGGC 61.032 55.000 0.00 0.00 0.00 4.52
756 771 1.748879 GGTCCGCTGCTATTTGGCA 60.749 57.895 0.00 0.00 40.15 4.92
757 772 1.103398 GGTCCGCTGCTATTTGGCAT 61.103 55.000 0.00 0.00 41.63 4.40
758 773 1.593196 GTCCGCTGCTATTTGGCATA 58.407 50.000 0.00 0.00 41.63 3.14
759 774 1.532868 GTCCGCTGCTATTTGGCATAG 59.467 52.381 0.00 0.00 41.63 2.23
760 775 0.239347 CCGCTGCTATTTGGCATAGC 59.761 55.000 12.17 12.17 45.28 2.97
774 789 3.897325 GGCATAGCCCGCTATTTAAAAC 58.103 45.455 6.48 0.00 44.06 2.43
775 790 3.316868 GGCATAGCCCGCTATTTAAAACA 59.683 43.478 6.48 0.00 44.06 2.83
776 791 4.537015 GCATAGCCCGCTATTTAAAACAG 58.463 43.478 6.48 0.00 37.16 3.16
777 792 4.036380 GCATAGCCCGCTATTTAAAACAGT 59.964 41.667 6.48 0.00 37.16 3.55
778 793 5.510671 CATAGCCCGCTATTTAAAACAGTG 58.489 41.667 6.48 0.00 37.16 3.66
779 794 3.418047 AGCCCGCTATTTAAAACAGTGT 58.582 40.909 10.90 0.00 0.00 3.55
780 795 4.581868 AGCCCGCTATTTAAAACAGTGTA 58.418 39.130 0.00 0.00 0.00 2.90
781 796 5.005094 AGCCCGCTATTTAAAACAGTGTAA 58.995 37.500 0.00 0.00 0.00 2.41
782 797 5.650703 AGCCCGCTATTTAAAACAGTGTAAT 59.349 36.000 0.00 0.00 0.00 1.89
783 798 6.152154 AGCCCGCTATTTAAAACAGTGTAATT 59.848 34.615 0.00 0.00 0.00 1.40
784 799 6.809689 GCCCGCTATTTAAAACAGTGTAATTT 59.190 34.615 0.00 0.00 0.00 1.82
785 800 7.969508 GCCCGCTATTTAAAACAGTGTAATTTA 59.030 33.333 0.00 0.00 0.00 1.40
951 1001 0.966875 TCGGCGTTGGAACCTAGCTA 60.967 55.000 6.85 0.00 0.00 3.32
1160 1215 0.032017 ACCTCCGCTTCTCCAGGTAT 60.032 55.000 0.00 0.00 37.50 2.73
1208 1266 1.125711 GTAGGTGTGGGTGAGTGGGT 61.126 60.000 0.00 0.00 0.00 4.51
1217 1275 1.077716 GTGAGTGGGTATGGTGGCC 60.078 63.158 0.00 0.00 0.00 5.36
1359 1435 4.035102 GGCCTGCCTTTCCTCGGT 62.035 66.667 0.00 0.00 0.00 4.69
1482 1558 2.685380 CACCTCTTCGGCTCCCCT 60.685 66.667 0.00 0.00 35.61 4.79
1816 1968 6.992123 TGCTTTTCTTCTCTGTCAATAGTGAA 59.008 34.615 0.00 0.00 34.87 3.18
1818 1970 9.155975 GCTTTTCTTCTCTGTCAATAGTGAATA 57.844 33.333 0.00 0.00 34.87 1.75
1821 1973 9.645059 TTTCTTCTCTGTCAATAGTGAATAGTG 57.355 33.333 0.00 0.00 34.87 2.74
1822 1974 8.581253 TCTTCTCTGTCAATAGTGAATAGTGA 57.419 34.615 0.00 0.84 36.18 3.41
1864 2039 2.596862 TGACGTTCGCGAACATATTCAG 59.403 45.455 40.99 28.42 44.71 3.02
1898 2073 2.434185 GAGCCGTCGCCATTGACA 60.434 61.111 0.00 0.00 38.84 3.58
1907 2082 1.756538 TCGCCATTGACAGAGCAGATA 59.243 47.619 0.00 0.00 0.00 1.98
2021 2201 8.351495 TCTGTTTTTCTTTTCATACAATGCAC 57.649 30.769 0.00 0.00 0.00 4.57
2031 2211 9.241317 CTTTTCATACAATGCACTAAATGGATC 57.759 33.333 0.00 0.00 38.67 3.36
2032 2212 6.544038 TCATACAATGCACTAAATGGATCG 57.456 37.500 0.00 0.00 38.67 3.69
2033 2213 5.469760 TCATACAATGCACTAAATGGATCGG 59.530 40.000 0.00 0.00 38.67 4.18
2034 2214 2.951642 ACAATGCACTAAATGGATCGGG 59.048 45.455 0.00 0.00 38.67 5.14
2035 2215 2.951642 CAATGCACTAAATGGATCGGGT 59.048 45.455 0.00 0.00 38.67 5.28
2036 2216 4.133820 CAATGCACTAAATGGATCGGGTA 58.866 43.478 0.00 0.00 38.67 3.69
2037 2217 4.640771 ATGCACTAAATGGATCGGGTAT 57.359 40.909 0.00 0.00 33.24 2.73
2038 2218 4.431416 TGCACTAAATGGATCGGGTATT 57.569 40.909 0.00 0.00 0.00 1.89
2145 2340 1.451207 AACTTGTGCAGTGCCGTCA 60.451 52.632 13.72 6.65 35.12 4.35
2263 2458 2.297129 GCAGGGGAAGAGGCTGAGT 61.297 63.158 0.00 0.00 0.00 3.41
2275 2470 0.908198 GGCTGAGTGATGAGGAGGTT 59.092 55.000 0.00 0.00 0.00 3.50
2452 2652 0.253113 TCACCCATGATGACCTCCCA 60.253 55.000 0.00 0.00 0.00 4.37
2714 2933 2.159430 TGCAACTTCATCATGTACGCAC 59.841 45.455 0.00 0.00 0.00 5.34
2805 3046 2.711542 GGATATAGGATTTGTGCCGGG 58.288 52.381 2.18 0.00 0.00 5.73
2855 3096 0.835941 ATGCTCCATCACCTCTCCAC 59.164 55.000 0.00 0.00 0.00 4.02
3078 3320 1.152567 CTTCCACACCCAAGGCCAA 60.153 57.895 5.01 0.00 0.00 4.52
3083 3325 0.615544 CACACCCAAGGCCAATGGAT 60.616 55.000 24.98 8.88 40.56 3.41
3262 3505 3.386078 TCTTTGTAAGCAAACATGGGCAA 59.614 39.130 0.00 0.00 39.43 4.52
3263 3506 3.827008 TTGTAAGCAAACATGGGCAAA 57.173 38.095 0.00 0.00 0.00 3.68
3393 3638 2.221169 GAATGGGTGCGCAATAGATGA 58.779 47.619 14.00 0.00 0.00 2.92
3422 3667 3.119096 GAAAGAGCCCGCCGTGAC 61.119 66.667 0.00 0.00 0.00 3.67
3423 3668 4.699522 AAAGAGCCCGCCGTGACC 62.700 66.667 0.00 0.00 0.00 4.02
3476 3994 0.524862 CAAGCTCCCATGTGAAGTGC 59.475 55.000 0.00 0.00 0.00 4.40
3657 4177 3.639538 AGTTGTACTAAGTGTGCGACAG 58.360 45.455 6.94 0.00 44.75 3.51
3665 4185 8.030692 TGTACTAAGTGTGCGACAGTTAATATT 58.969 33.333 13.78 0.00 41.77 1.28
3679 4199 6.931281 ACAGTTAATATTGATCGGATGGAGTG 59.069 38.462 0.00 0.00 0.00 3.51
3858 4487 7.236432 AGTGGCTGAATATATGTTCATAGAGGT 59.764 37.037 14.42 0.00 37.47 3.85
4017 4646 8.171164 ACAACAATAGGAAGAAGGAAAAGAAG 57.829 34.615 0.00 0.00 0.00 2.85
4019 4648 6.306987 ACAATAGGAAGAAGGAAAAGAAGCA 58.693 36.000 0.00 0.00 0.00 3.91
4059 4688 8.320396 TGTGTTGCATGCATGTATTTTAATTT 57.680 26.923 26.79 0.00 0.00 1.82
4064 4693 8.774890 TGCATGCATGTATTTTAATTTTGTCT 57.225 26.923 26.79 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 43 7.135089 TGAGTTTAACAATAATGCGTGCTAA 57.865 32.000 0.00 0.00 0.00 3.09
155 162 8.253810 TGATCTACAAATGTTGGTGTTCAAAAA 58.746 29.630 0.00 0.00 37.08 1.94
185 192 2.191128 ACGAACCTGTACCGAGTAGT 57.809 50.000 0.00 0.00 0.00 2.73
193 200 5.412526 TTCATCAACAAACGAACCTGTAC 57.587 39.130 0.00 0.00 0.00 2.90
204 211 8.423349 AGTTTCAGATTCCATTTCATCAACAAA 58.577 29.630 0.00 0.00 0.00 2.83
218 225 5.157781 CGGATAGATCGAGTTTCAGATTCC 58.842 45.833 0.00 0.00 0.00 3.01
272 279 2.744741 ACACACGTCAATCACACACAAA 59.255 40.909 0.00 0.00 0.00 2.83
395 407 3.509442 ACCCTTCTTTTCATTGCATGGA 58.491 40.909 0.00 0.00 0.00 3.41
629 644 7.549488 AGCTATAGCCGGCTATTTAAAACTATG 59.451 37.037 44.65 24.19 43.38 2.23
630 645 7.621796 AGCTATAGCCGGCTATTTAAAACTAT 58.378 34.615 44.65 26.21 43.38 2.12
631 646 7.001099 AGCTATAGCCGGCTATTTAAAACTA 57.999 36.000 44.65 27.23 43.38 2.24
632 647 5.866207 AGCTATAGCCGGCTATTTAAAACT 58.134 37.500 44.65 29.88 43.38 2.66
633 648 5.932883 AGAGCTATAGCCGGCTATTTAAAAC 59.067 40.000 44.65 30.36 43.38 2.43
634 649 5.932303 CAGAGCTATAGCCGGCTATTTAAAA 59.068 40.000 44.65 29.19 43.38 1.52
635 650 5.479306 CAGAGCTATAGCCGGCTATTTAAA 58.521 41.667 44.65 29.52 43.38 1.52
636 651 4.620803 GCAGAGCTATAGCCGGCTATTTAA 60.621 45.833 44.65 29.85 43.38 1.52
637 652 3.119101 GCAGAGCTATAGCCGGCTATTTA 60.119 47.826 44.65 30.51 43.38 1.40
638 653 2.354203 GCAGAGCTATAGCCGGCTATTT 60.354 50.000 44.65 31.93 43.38 1.40
639 654 1.205893 GCAGAGCTATAGCCGGCTATT 59.794 52.381 44.65 31.45 43.38 1.73
640 655 0.820871 GCAGAGCTATAGCCGGCTAT 59.179 55.000 42.09 42.09 43.38 2.97
641 656 0.251386 AGCAGAGCTATAGCCGGCTA 60.251 55.000 36.88 36.88 43.38 3.93
642 657 0.251386 TAGCAGAGCTATAGCCGGCT 60.251 55.000 34.85 34.85 41.92 5.52
643 658 2.268022 TAGCAGAGCTATAGCCGGC 58.732 57.895 21.89 21.89 43.38 6.13
651 666 0.251386 AGCGGGCTATAGCAGAGCTA 60.251 55.000 27.82 0.71 45.55 3.32
652 667 0.251386 TAGCGGGCTATAGCAGAGCT 60.251 55.000 29.93 29.93 44.24 4.09
653 668 0.820871 ATAGCGGGCTATAGCAGAGC 59.179 55.000 25.53 23.80 44.36 4.09
654 669 3.980646 CTATAGCGGGCTATAGCAGAG 57.019 52.381 26.16 16.17 46.26 3.35
660 675 3.835978 TGAAAAGGCTATAGCGGGCTATA 59.164 43.478 18.30 17.02 43.26 1.31
661 676 2.637872 TGAAAAGGCTATAGCGGGCTAT 59.362 45.455 18.30 16.61 43.26 2.97
662 677 2.037251 CTGAAAAGGCTATAGCGGGCTA 59.963 50.000 18.30 2.42 43.26 3.93
663 678 0.837272 TGAAAAGGCTATAGCGGGCT 59.163 50.000 18.30 7.37 43.26 5.19
664 679 1.230324 CTGAAAAGGCTATAGCGGGC 58.770 55.000 18.30 5.04 43.26 6.13
665 680 2.622064 ACTGAAAAGGCTATAGCGGG 57.378 50.000 18.30 5.81 43.26 6.13
666 681 3.069729 ACCTACTGAAAAGGCTATAGCGG 59.930 47.826 18.30 11.72 43.26 5.52
667 682 4.323553 ACCTACTGAAAAGGCTATAGCG 57.676 45.455 18.30 5.39 43.26 4.26
668 683 5.057819 GGAACCTACTGAAAAGGCTATAGC 58.942 45.833 16.78 16.78 37.67 2.97
687 702 2.396590 TGAGACCATTTAGCGGGAAC 57.603 50.000 0.00 0.00 0.00 3.62
688 703 2.238646 ACATGAGACCATTTAGCGGGAA 59.761 45.455 0.00 0.00 0.00 3.97
689 704 1.837439 ACATGAGACCATTTAGCGGGA 59.163 47.619 0.00 0.00 0.00 5.14
690 705 2.332063 ACATGAGACCATTTAGCGGG 57.668 50.000 0.00 0.00 0.00 6.13
691 706 3.792401 TGTACATGAGACCATTTAGCGG 58.208 45.455 0.00 0.00 0.00 5.52
692 707 5.794687 TTTGTACATGAGACCATTTAGCG 57.205 39.130 0.00 0.00 0.00 4.26
693 708 7.355778 GCTATTTGTACATGAGACCATTTAGC 58.644 38.462 0.00 4.43 0.00 3.09
694 709 7.041098 GGGCTATTTGTACATGAGACCATTTAG 60.041 40.741 15.82 0.00 35.19 1.85
695 710 6.770785 GGGCTATTTGTACATGAGACCATTTA 59.229 38.462 15.82 0.00 35.19 1.40
696 711 5.594317 GGGCTATTTGTACATGAGACCATTT 59.406 40.000 15.82 0.00 35.19 2.32
697 712 5.133221 GGGCTATTTGTACATGAGACCATT 58.867 41.667 15.82 0.00 35.19 3.16
698 713 4.718961 GGGCTATTTGTACATGAGACCAT 58.281 43.478 15.82 0.00 35.19 3.55
699 714 3.431626 CGGGCTATTTGTACATGAGACCA 60.432 47.826 19.06 0.00 34.72 4.02
700 715 3.131396 CGGGCTATTTGTACATGAGACC 58.869 50.000 12.17 12.17 31.35 3.85
701 716 2.544267 GCGGGCTATTTGTACATGAGAC 59.456 50.000 0.00 0.00 0.00 3.36
702 717 2.434336 AGCGGGCTATTTGTACATGAGA 59.566 45.455 0.00 0.00 0.00 3.27
703 718 2.838736 AGCGGGCTATTTGTACATGAG 58.161 47.619 0.00 0.00 0.00 2.90
704 719 4.617253 ATAGCGGGCTATTTGTACATGA 57.383 40.909 7.36 0.00 35.92 3.07
705 720 4.330074 GCTATAGCGGGCTATTTGTACATG 59.670 45.833 17.49 0.00 39.65 3.21
706 721 4.504858 GCTATAGCGGGCTATTTGTACAT 58.495 43.478 17.49 0.00 39.65 2.29
707 722 3.921677 GCTATAGCGGGCTATTTGTACA 58.078 45.455 17.49 0.00 39.65 2.90
721 736 4.152580 GCGGACCTTAAAATCAGCTATAGC 59.847 45.833 17.33 17.33 42.49 2.97
722 737 5.406780 CAGCGGACCTTAAAATCAGCTATAG 59.593 44.000 11.30 0.00 43.30 1.31
723 738 5.297547 CAGCGGACCTTAAAATCAGCTATA 58.702 41.667 11.30 0.00 43.30 1.31
724 739 4.130118 CAGCGGACCTTAAAATCAGCTAT 58.870 43.478 11.30 0.00 43.30 2.97
725 740 3.531538 CAGCGGACCTTAAAATCAGCTA 58.468 45.455 11.30 0.00 43.30 3.32
726 741 2.359900 CAGCGGACCTTAAAATCAGCT 58.640 47.619 7.25 7.25 45.57 4.24
727 742 1.202188 GCAGCGGACCTTAAAATCAGC 60.202 52.381 3.47 3.47 36.43 4.26
728 743 2.359900 AGCAGCGGACCTTAAAATCAG 58.640 47.619 0.00 0.00 0.00 2.90
729 744 2.489938 AGCAGCGGACCTTAAAATCA 57.510 45.000 0.00 0.00 0.00 2.57
730 745 5.273944 CAAATAGCAGCGGACCTTAAAATC 58.726 41.667 0.00 0.00 0.00 2.17
731 746 4.097892 CCAAATAGCAGCGGACCTTAAAAT 59.902 41.667 0.00 0.00 0.00 1.82
732 747 3.442273 CCAAATAGCAGCGGACCTTAAAA 59.558 43.478 0.00 0.00 0.00 1.52
733 748 3.013921 CCAAATAGCAGCGGACCTTAAA 58.986 45.455 0.00 0.00 0.00 1.52
734 749 2.639065 CCAAATAGCAGCGGACCTTAA 58.361 47.619 0.00 0.00 0.00 1.85
735 750 1.745827 GCCAAATAGCAGCGGACCTTA 60.746 52.381 0.00 0.00 0.00 2.69
736 751 1.032114 GCCAAATAGCAGCGGACCTT 61.032 55.000 0.00 0.00 0.00 3.50
737 752 1.452108 GCCAAATAGCAGCGGACCT 60.452 57.895 0.00 0.00 0.00 3.85
738 753 1.748879 TGCCAAATAGCAGCGGACC 60.749 57.895 0.00 0.00 38.00 4.46
739 754 3.903783 TGCCAAATAGCAGCGGAC 58.096 55.556 0.00 0.00 38.00 4.79
754 769 4.036380 ACTGTTTTAAATAGCGGGCTATGC 59.964 41.667 13.53 2.55 39.03 3.14
755 770 5.065988 ACACTGTTTTAAATAGCGGGCTATG 59.934 40.000 13.53 2.18 39.03 2.23
756 771 5.190677 ACACTGTTTTAAATAGCGGGCTAT 58.809 37.500 7.36 7.36 40.63 2.97
757 772 4.581868 ACACTGTTTTAAATAGCGGGCTA 58.418 39.130 2.42 2.42 0.00 3.93
758 773 3.418047 ACACTGTTTTAAATAGCGGGCT 58.582 40.909 1.36 0.00 0.00 5.19
759 774 3.842732 ACACTGTTTTAAATAGCGGGC 57.157 42.857 1.36 0.00 0.00 6.13
854 904 8.914011 GCTGAATAAAACATAATTACCCCTTCT 58.086 33.333 0.00 0.00 0.00 2.85
951 1001 3.262448 ATGCCGGCTTTACACCCGT 62.262 57.895 29.70 0.00 42.87 5.28
1063 1118 3.863400 GCAGACGGGAACAAACTAAGCTA 60.863 47.826 0.00 0.00 0.00 3.32
1064 1119 2.767505 CAGACGGGAACAAACTAAGCT 58.232 47.619 0.00 0.00 0.00 3.74
1065 1120 1.197036 GCAGACGGGAACAAACTAAGC 59.803 52.381 0.00 0.00 0.00 3.09
1066 1121 1.804748 GGCAGACGGGAACAAACTAAG 59.195 52.381 0.00 0.00 0.00 2.18
1160 1215 3.244181 TGCTATCGCCATTGATCTGCTAA 60.244 43.478 0.00 0.00 32.59 3.09
1341 1417 4.033776 CCGAGGAAAGGCAGGCCA 62.034 66.667 13.63 0.00 38.92 5.36
1350 1426 0.894184 AGAGCGTCTCACCGAGGAAA 60.894 55.000 9.09 0.00 32.06 3.13
1359 1435 4.399180 ACGAAGGAGAGCGTCTCA 57.601 55.556 14.26 0.00 45.12 3.27
1681 1757 4.249020 CACAACACGCGGCTGCAA 62.249 61.111 19.50 0.00 42.97 4.08
1816 1968 5.887598 TGTGCAATTTAAGGAGCATCACTAT 59.112 36.000 0.00 0.00 39.43 2.12
1818 1970 4.081406 TGTGCAATTTAAGGAGCATCACT 58.919 39.130 0.00 0.00 39.43 3.41
1819 1971 4.418392 CTGTGCAATTTAAGGAGCATCAC 58.582 43.478 0.00 0.00 39.43 3.06
1820 1972 3.444742 CCTGTGCAATTTAAGGAGCATCA 59.555 43.478 0.00 0.00 39.43 3.07
1821 1973 3.445096 ACCTGTGCAATTTAAGGAGCATC 59.555 43.478 7.43 0.00 39.43 3.91
1822 1974 3.194116 CACCTGTGCAATTTAAGGAGCAT 59.806 43.478 7.43 0.00 39.43 3.79
1864 2039 3.304257 CGGCTCCATGCTTATGAACATTC 60.304 47.826 0.00 0.00 42.39 2.67
1898 2073 2.541233 ACCACTGGTCTATCTGCTCT 57.459 50.000 0.00 0.00 0.00 4.09
1907 2082 2.743718 CTGCCGAACCACTGGTCT 59.256 61.111 0.00 0.00 33.12 3.85
2021 2201 3.007614 ACCCGAATACCCGATCCATTTAG 59.992 47.826 0.00 0.00 0.00 1.85
2031 2211 3.318839 TGATAGTGTAACCCGAATACCCG 59.681 47.826 0.00 0.00 37.80 5.28
2032 2212 4.942761 TGATAGTGTAACCCGAATACCC 57.057 45.455 0.00 0.00 37.80 3.69
2033 2213 6.040166 TCTCTTGATAGTGTAACCCGAATACC 59.960 42.308 0.00 0.00 37.80 2.73
2034 2214 7.013083 TCTCTCTTGATAGTGTAACCCGAATAC 59.987 40.741 0.00 0.00 37.80 1.89
2035 2215 7.058525 TCTCTCTTGATAGTGTAACCCGAATA 58.941 38.462 0.00 0.00 37.80 1.75
2036 2216 5.892119 TCTCTCTTGATAGTGTAACCCGAAT 59.108 40.000 0.00 0.00 37.80 3.34
2037 2217 5.258841 TCTCTCTTGATAGTGTAACCCGAA 58.741 41.667 0.00 0.00 37.80 4.30
2038 2218 4.851843 TCTCTCTTGATAGTGTAACCCGA 58.148 43.478 0.00 0.00 37.80 5.14
2145 2340 0.667792 GAAGACCGCGTTCAGCTTCT 60.668 55.000 6.39 0.00 45.59 2.85
2176 2371 0.695347 CCACCTTCTTCCTTGCCTCT 59.305 55.000 0.00 0.00 0.00 3.69
2263 2458 1.728323 TGTCCACAACCTCCTCATCA 58.272 50.000 0.00 0.00 0.00 3.07
2275 2470 1.214175 AGGTTGACCATGTTGTCCACA 59.786 47.619 2.56 0.00 40.71 4.17
2452 2652 0.892755 TCGCCGTGTACTTCATCCTT 59.107 50.000 0.00 0.00 0.00 3.36
2663 2863 7.770201 TGATCAATGAGAGAAAAACAACAACA 58.230 30.769 0.00 0.00 0.00 3.33
2714 2933 5.168526 TCAAGTTCTTCGTTGACAATTGG 57.831 39.130 10.83 0.00 0.00 3.16
2805 3046 0.790866 GCAACTTCGCGAGCATGTTC 60.791 55.000 9.59 0.00 0.00 3.18
2925 3167 8.706492 TGCCAAGATAAAAATAAGCAAATGAG 57.294 30.769 0.00 0.00 0.00 2.90
3090 3332 1.568504 AGCTTACGGAAGGTCATGGA 58.431 50.000 6.18 0.00 39.17 3.41
3224 3467 8.677300 GCTTACAAAGATAATGTCATTTCCAGA 58.323 33.333 2.79 0.00 32.27 3.86
3262 3505 8.558700 CCTTGCAGTACAAATTTAAAAGCATTT 58.441 29.630 0.00 0.00 37.69 2.32
3263 3506 7.173047 CCCTTGCAGTACAAATTTAAAAGCATT 59.827 33.333 0.00 0.00 37.96 3.56
3325 3570 6.005066 TCATAAATGGCCTTCTCATCAGAA 57.995 37.500 3.32 0.00 37.11 3.02
3326 3571 5.635278 TCATAAATGGCCTTCTCATCAGA 57.365 39.130 3.32 0.00 0.00 3.27
3327 3572 5.278364 GCTTCATAAATGGCCTTCTCATCAG 60.278 44.000 3.32 0.00 0.00 2.90
3361 3606 3.243569 CGCACCCATTCAACCAAAAGTAA 60.244 43.478 0.00 0.00 0.00 2.24
3365 3610 0.249657 GCGCACCCATTCAACCAAAA 60.250 50.000 0.30 0.00 0.00 2.44
3405 3650 3.119096 GTCACGGCGGGCTCTTTC 61.119 66.667 13.24 0.00 0.00 2.62
3416 3661 0.522705 CACATACTCGACGGTCACGG 60.523 60.000 9.10 0.07 46.48 4.94
3418 3663 1.614385 CACACATACTCGACGGTCAC 58.386 55.000 9.10 0.00 0.00 3.67
3419 3664 0.524414 CCACACATACTCGACGGTCA 59.476 55.000 9.10 0.00 0.00 4.02
3420 3665 0.524862 ACCACACATACTCGACGGTC 59.475 55.000 0.00 0.00 0.00 4.79
3422 3667 0.524414 TGACCACACATACTCGACGG 59.476 55.000 0.00 0.00 0.00 4.79
3423 3668 1.614385 GTGACCACACATACTCGACG 58.386 55.000 0.00 0.00 45.32 5.12
3476 3994 0.250338 GTAGCCGGCCCATTTAGAGG 60.250 60.000 26.15 0.00 0.00 3.69
3610 4130 8.950208 TTGTACACGACAATTAATATGGATCA 57.050 30.769 0.00 0.00 43.30 2.92
3657 4177 5.643777 CCCACTCCATCCGATCAATATTAAC 59.356 44.000 0.00 0.00 0.00 2.01
3665 4185 1.578897 TTTCCCACTCCATCCGATCA 58.421 50.000 0.00 0.00 0.00 2.92
3867 4496 7.032598 TCCTCTTTGGGAAAATAGAGAACAT 57.967 36.000 0.00 0.00 37.00 2.71
4038 4667 9.217278 AGACAAAATTAAAATACATGCATGCAA 57.783 25.926 26.68 15.34 0.00 4.08
4059 4688 2.837532 TGAGCATGCAGTACAGACAA 57.162 45.000 21.98 0.00 0.00 3.18
4064 4693 6.647895 CAGTTATGATATGAGCATGCAGTACA 59.352 38.462 21.98 14.14 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.