Multiple sequence alignment - TraesCS5A01G037500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G037500 chr5A 100.000 3786 0 0 1 3786 34902543 34906328 0.000000e+00 6992.0
1 TraesCS5A01G037500 chr5A 86.548 394 31 14 2438 2827 35036023 35035648 7.570000e-112 414.0
2 TraesCS5A01G037500 chr5A 94.928 138 7 0 1145 1282 77791588 77791451 2.290000e-52 217.0
3 TraesCS5A01G037500 chr5D 95.852 2869 89 9 920 3786 44488771 44491611 0.000000e+00 4612.0
4 TraesCS5A01G037500 chr5D 90.783 651 58 2 3 652 44453281 44453930 0.000000e+00 869.0
5 TraesCS5A01G037500 chr5D 90.881 318 26 3 2438 2753 44609567 44609251 1.260000e-114 424.0
6 TraesCS5A01G037500 chr5D 81.250 368 53 14 3007 3363 44492380 44492742 2.230000e-72 283.0
7 TraesCS5A01G037500 chr5D 89.677 155 13 2 1128 1282 81788574 81788423 1.070000e-45 195.0
8 TraesCS5A01G037500 chr5D 90.278 144 14 0 1136 1279 81736775 81736632 4.990000e-44 189.0
9 TraesCS5A01G037500 chr5B 95.760 2854 95 9 946 3786 43884100 43886940 0.000000e+00 4577.0
10 TraesCS5A01G037500 chr5B 96.440 2584 71 8 978 3551 44231617 44229045 0.000000e+00 4242.0
11 TraesCS5A01G037500 chr5B 82.692 364 52 7 3007 3363 43887696 43888055 2.840000e-81 313.0
12 TraesCS5A01G037500 chr5B 91.892 222 16 2 3556 3775 44229105 44228884 3.670000e-80 309.0
13 TraesCS5A01G037500 chr5B 81.199 367 58 7 3007 3366 44227526 44227164 6.190000e-73 285.0
14 TraesCS5A01G037500 chr5B 93.478 138 9 0 1145 1282 90183842 90183705 4.960000e-49 206.0
15 TraesCS5A01G037500 chrUn 91.796 1097 83 7 2421 3513 65786178 65785085 0.000000e+00 1520.0
16 TraesCS5A01G037500 chrUn 92.777 443 28 2 1470 1911 65786638 65786199 4.120000e-179 638.0
17 TraesCS5A01G037500 chrUn 87.130 575 47 16 929 1484 65787141 65786575 8.930000e-176 627.0
18 TraesCS5A01G037500 chr7B 91.304 138 12 0 1139 1276 699372091 699372228 4.990000e-44 189.0
19 TraesCS5A01G037500 chr1B 100.000 31 0 0 760 790 673642879 673642909 1.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G037500 chr5A 34902543 34906328 3785 False 6992.000000 6992 100.000000 1 3786 1 chr5A.!!$F1 3785
1 TraesCS5A01G037500 chr5D 44488771 44492742 3971 False 2447.500000 4612 88.551000 920 3786 2 chr5D.!!$F2 2866
2 TraesCS5A01G037500 chr5D 44453281 44453930 649 False 869.000000 869 90.783000 3 652 1 chr5D.!!$F1 649
3 TraesCS5A01G037500 chr5B 43884100 43888055 3955 False 2445.000000 4577 89.226000 946 3786 2 chr5B.!!$F1 2840
4 TraesCS5A01G037500 chr5B 44227164 44231617 4453 True 1612.000000 4242 89.843667 978 3775 3 chr5B.!!$R2 2797
5 TraesCS5A01G037500 chrUn 65785085 65787141 2056 True 928.333333 1520 90.567667 929 3513 3 chrUn.!!$R1 2584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 654 0.031857 TGCCCGTGAAAGCAATGTTG 59.968 50.0 0.00 0.00 35.69 3.33 F
653 655 0.031994 GCCCGTGAAAGCAATGTTGT 59.968 50.0 0.00 0.00 0.00 3.32 F
913 915 0.038744 CTCCAGCTTGGACCATGGTT 59.961 55.0 20.85 2.15 42.67 3.67 F
914 916 0.251297 TCCAGCTTGGACCATGGTTG 60.251 55.0 20.85 11.97 42.67 3.77 F
955 957 0.542702 CCACTTTGGGCCCATCTTGT 60.543 55.0 29.23 18.67 32.67 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 1764 0.108472 CGATGAGGCTGTGCAGAGAA 60.108 55.000 16.28 0.0 0.00 2.87 R
2305 2332 0.179059 TTCACGTGCAGCTTCTCCAA 60.179 50.000 11.67 0.0 0.00 3.53 R
2318 2345 0.180406 AGAAACAGCCACCTTCACGT 59.820 50.000 0.00 0.0 0.00 4.49 R
2319 2346 1.264288 GAAGAAACAGCCACCTTCACG 59.736 52.381 0.00 0.0 36.11 4.35 R
2897 2930 3.214328 ACCAGCAAGTGTAGGACAAAAG 58.786 45.455 0.00 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.491152 CACTGCGAGAATTCATATAACCTTTAG 58.509 37.037 8.44 0.00 0.00 1.85
29 30 6.401153 GCGAGAATTCATATAACCTTTAGCGG 60.401 42.308 8.44 0.00 0.00 5.52
33 34 3.909430 TCATATAACCTTTAGCGGCTCG 58.091 45.455 5.39 0.00 0.00 5.03
48 49 4.501285 TCGGGAGCGATCGGGAGT 62.501 66.667 18.30 0.00 0.00 3.85
50 51 2.107141 GGGAGCGATCGGGAGTTG 59.893 66.667 18.30 0.00 0.00 3.16
52 53 1.389609 GGGAGCGATCGGGAGTTGTA 61.390 60.000 18.30 0.00 0.00 2.41
88 89 0.843309 TTTGTGGTGAGCTTCCTGGA 59.157 50.000 9.68 0.00 0.00 3.86
108 109 2.423388 GGATGGCTCTTCCCATTGC 58.577 57.895 0.00 0.00 45.41 3.56
134 135 8.285394 CGAATGGAATTGAGACTATTATGGTTG 58.715 37.037 0.00 0.00 36.07 3.77
138 139 7.013559 TGGAATTGAGACTATTATGGTTGCATG 59.986 37.037 0.00 0.00 0.00 4.06
154 155 2.105306 TGCATGATGGTATCTCTGGTGG 59.895 50.000 0.00 0.00 0.00 4.61
198 199 2.842645 AAGACGTGGTATCCCCTACT 57.157 50.000 0.00 0.00 0.00 2.57
201 202 2.107901 AGACGTGGTATCCCCTACTAGG 59.892 54.545 0.00 0.00 34.11 3.02
212 213 1.893801 CCCTACTAGGTCGGCCATAAG 59.106 57.143 9.71 5.02 37.19 1.73
217 218 5.948162 CCTACTAGGTCGGCCATAAGTATAA 59.052 44.000 9.71 0.00 37.19 0.98
220 221 7.128234 ACTAGGTCGGCCATAAGTATAAAAA 57.872 36.000 9.71 0.00 37.19 1.94
229 230 6.153851 GGCCATAAGTATAAAAAGGGTTGTGT 59.846 38.462 0.00 0.00 0.00 3.72
244 245 2.512485 TGTGTTGAATGCTTTGGCTG 57.488 45.000 0.00 0.00 39.59 4.85
245 246 1.755959 TGTGTTGAATGCTTTGGCTGT 59.244 42.857 0.00 0.00 39.59 4.40
286 288 1.464997 GAATGTCAAACGGAGCAGGAC 59.535 52.381 0.00 0.00 0.00 3.85
292 294 2.319890 AAACGGAGCAGGACAACGGT 62.320 55.000 0.00 0.00 0.00 4.83
302 304 1.825474 AGGACAACGGTGAGGACTATG 59.175 52.381 7.88 0.00 0.00 2.23
319 321 7.934457 AGGACTATGAAACATAACATTGATGC 58.066 34.615 0.00 0.00 0.00 3.91
332 334 3.119990 ACATTGATGCGAGTTTTTACCCG 60.120 43.478 0.00 0.00 0.00 5.28
336 338 0.945265 TGCGAGTTTTTACCCGGACG 60.945 55.000 0.73 0.00 0.00 4.79
386 388 1.002134 AGACTCCAATGGGGCGTTG 60.002 57.895 0.00 0.00 36.21 4.10
389 391 0.916086 ACTCCAATGGGGCGTTGATA 59.084 50.000 0.00 0.00 32.66 2.15
408 410 7.201291 CGTTGATAGTTGCATCATGTTCTTTTG 60.201 37.037 0.00 0.00 34.95 2.44
413 415 6.211515 AGTTGCATCATGTTCTTTTGAAGAC 58.788 36.000 0.00 0.00 39.39 3.01
418 420 4.597079 TCATGTTCTTTTGAAGACGTTGC 58.403 39.130 0.00 0.00 39.39 4.17
422 424 4.576873 TGTTCTTTTGAAGACGTTGCCATA 59.423 37.500 0.00 0.00 39.39 2.74
452 454 5.111989 GCATCAATAGAAGCAGTCACACTA 58.888 41.667 0.00 0.00 38.31 2.74
476 478 2.079925 GAAGGGTCATGACTTGCAGAC 58.920 52.381 24.50 6.63 0.00 3.51
491 493 2.642311 TGCAGACTTGTTGGGGATCTTA 59.358 45.455 0.00 0.00 0.00 2.10
492 494 3.274288 GCAGACTTGTTGGGGATCTTAG 58.726 50.000 0.00 0.00 0.00 2.18
494 496 2.912956 AGACTTGTTGGGGATCTTAGCA 59.087 45.455 0.00 0.00 0.00 3.49
537 539 8.498054 TTCAATGGAGATAGTTCAAGTCATTC 57.502 34.615 0.00 0.00 0.00 2.67
579 581 4.353777 AGCATAAGGAGAAGTGGTGACTA 58.646 43.478 0.00 0.00 0.00 2.59
583 585 6.630413 GCATAAGGAGAAGTGGTGACTAATGA 60.630 42.308 0.00 0.00 0.00 2.57
587 589 3.929610 GAGAAGTGGTGACTAATGACTGC 59.070 47.826 0.00 0.00 0.00 4.40
627 629 0.390340 CGGCATGGCGACTATAGCAT 60.390 55.000 35.61 0.00 36.08 3.79
630 632 2.353704 GGCATGGCGACTATAGCATACA 60.354 50.000 2.41 0.00 36.08 2.29
636 638 2.668457 GCGACTATAGCATACATGTGCC 59.332 50.000 9.11 0.00 46.19 5.01
639 641 2.632996 ACTATAGCATACATGTGCCCGT 59.367 45.455 9.11 0.00 46.19 5.28
643 645 0.808125 GCATACATGTGCCCGTGAAA 59.192 50.000 9.11 0.00 39.18 2.69
652 654 0.031857 TGCCCGTGAAAGCAATGTTG 59.968 50.000 0.00 0.00 35.69 3.33
653 655 0.031994 GCCCGTGAAAGCAATGTTGT 59.968 50.000 0.00 0.00 0.00 3.32
654 656 1.537990 GCCCGTGAAAGCAATGTTGTT 60.538 47.619 0.00 0.00 0.00 2.83
655 657 2.126467 CCCGTGAAAGCAATGTTGTTG 58.874 47.619 0.00 0.00 0.00 3.33
656 658 2.481104 CCCGTGAAAGCAATGTTGTTGT 60.481 45.455 0.00 0.00 0.00 3.32
657 659 2.535166 CCGTGAAAGCAATGTTGTTGTG 59.465 45.455 0.00 0.00 0.00 3.33
658 660 2.034675 CGTGAAAGCAATGTTGTTGTGC 60.035 45.455 0.00 0.00 38.59 4.57
659 661 2.034675 GTGAAAGCAATGTTGTTGTGCG 60.035 45.455 0.00 0.00 43.16 5.34
660 662 2.192624 GAAAGCAATGTTGTTGTGCGT 58.807 42.857 0.00 0.00 43.16 5.24
661 663 2.292103 AAGCAATGTTGTTGTGCGTT 57.708 40.000 0.00 0.00 43.16 4.84
662 664 1.838913 AGCAATGTTGTTGTGCGTTC 58.161 45.000 0.00 0.00 43.16 3.95
663 665 0.498095 GCAATGTTGTTGTGCGTTCG 59.502 50.000 0.00 0.00 0.00 3.95
664 666 0.498095 CAATGTTGTTGTGCGTTCGC 59.502 50.000 10.34 10.34 0.00 4.70
665 667 0.380378 AATGTTGTTGTGCGTTCGCT 59.620 45.000 17.63 0.00 0.00 4.93
666 668 0.380378 ATGTTGTTGTGCGTTCGCTT 59.620 45.000 17.63 0.00 0.00 4.68
667 669 0.522286 TGTTGTTGTGCGTTCGCTTG 60.522 50.000 17.63 0.00 0.00 4.01
668 670 1.585002 TTGTTGTGCGTTCGCTTGC 60.585 52.632 17.63 8.86 0.00 4.01
669 671 1.987704 TTGTTGTGCGTTCGCTTGCT 61.988 50.000 17.63 0.00 0.00 3.91
670 672 1.722507 GTTGTGCGTTCGCTTGCTC 60.723 57.895 17.63 4.84 0.00 4.26
671 673 3.222126 TTGTGCGTTCGCTTGCTCG 62.222 57.895 17.63 0.00 0.00 5.03
672 674 3.403057 GTGCGTTCGCTTGCTCGA 61.403 61.111 17.63 0.00 36.60 4.04
673 675 3.105782 TGCGTTCGCTTGCTCGAG 61.106 61.111 17.63 8.45 39.82 4.04
674 676 4.491328 GCGTTCGCTTGCTCGAGC 62.491 66.667 30.42 30.42 39.82 5.03
688 690 4.468095 GCTCGAGCAAGTTAACAAGAAA 57.532 40.909 31.91 0.00 41.59 2.52
689 691 4.844267 GCTCGAGCAAGTTAACAAGAAAA 58.156 39.130 31.91 0.00 41.59 2.29
690 692 4.671068 GCTCGAGCAAGTTAACAAGAAAAC 59.329 41.667 31.91 0.00 41.59 2.43
691 693 5.504173 GCTCGAGCAAGTTAACAAGAAAACT 60.504 40.000 31.91 0.00 41.59 2.66
692 694 6.292703 GCTCGAGCAAGTTAACAAGAAAACTA 60.293 38.462 31.91 0.00 41.59 2.24
693 695 7.571428 GCTCGAGCAAGTTAACAAGAAAACTAT 60.571 37.037 31.91 0.00 41.59 2.12
694 696 7.793902 TCGAGCAAGTTAACAAGAAAACTATC 58.206 34.615 8.61 0.00 34.91 2.08
695 697 7.656137 TCGAGCAAGTTAACAAGAAAACTATCT 59.344 33.333 8.61 0.00 34.91 1.98
696 698 7.742089 CGAGCAAGTTAACAAGAAAACTATCTG 59.258 37.037 8.61 0.00 34.91 2.90
697 699 8.677148 AGCAAGTTAACAAGAAAACTATCTGA 57.323 30.769 8.61 0.00 34.91 3.27
698 700 8.778358 AGCAAGTTAACAAGAAAACTATCTGAG 58.222 33.333 8.61 0.00 34.91 3.35
699 701 8.017946 GCAAGTTAACAAGAAAACTATCTGAGG 58.982 37.037 8.61 0.00 34.91 3.86
700 702 9.273016 CAAGTTAACAAGAAAACTATCTGAGGA 57.727 33.333 8.61 0.00 34.91 3.71
701 703 9.495572 AAGTTAACAAGAAAACTATCTGAGGAG 57.504 33.333 8.61 0.00 34.91 3.69
702 704 8.652290 AGTTAACAAGAAAACTATCTGAGGAGT 58.348 33.333 8.61 0.00 34.23 3.85
703 705 8.713271 GTTAACAAGAAAACTATCTGAGGAGTG 58.287 37.037 0.00 0.00 0.00 3.51
704 706 5.799213 ACAAGAAAACTATCTGAGGAGTGG 58.201 41.667 0.00 0.00 0.00 4.00
705 707 4.479786 AGAAAACTATCTGAGGAGTGGC 57.520 45.455 0.00 0.00 0.00 5.01
706 708 2.969628 AAACTATCTGAGGAGTGGCG 57.030 50.000 0.00 0.00 0.00 5.69
707 709 1.853963 AACTATCTGAGGAGTGGCGT 58.146 50.000 0.00 0.00 0.00 5.68
708 710 1.107114 ACTATCTGAGGAGTGGCGTG 58.893 55.000 0.00 0.00 0.00 5.34
709 711 1.341089 ACTATCTGAGGAGTGGCGTGA 60.341 52.381 0.00 0.00 0.00 4.35
710 712 1.959985 CTATCTGAGGAGTGGCGTGAT 59.040 52.381 0.00 0.00 0.00 3.06
711 713 1.198713 ATCTGAGGAGTGGCGTGATT 58.801 50.000 0.00 0.00 0.00 2.57
712 714 1.847328 TCTGAGGAGTGGCGTGATTA 58.153 50.000 0.00 0.00 0.00 1.75
713 715 2.388735 TCTGAGGAGTGGCGTGATTAT 58.611 47.619 0.00 0.00 0.00 1.28
714 716 2.362397 TCTGAGGAGTGGCGTGATTATC 59.638 50.000 0.00 0.00 0.00 1.75
715 717 1.412710 TGAGGAGTGGCGTGATTATCC 59.587 52.381 0.00 0.00 0.00 2.59
716 718 1.689273 GAGGAGTGGCGTGATTATCCT 59.311 52.381 0.00 0.00 39.85 3.24
717 719 1.689273 AGGAGTGGCGTGATTATCCTC 59.311 52.381 0.00 0.00 31.52 3.71
718 720 1.270358 GGAGTGGCGTGATTATCCTCC 60.270 57.143 0.00 0.00 0.00 4.30
719 721 0.389391 AGTGGCGTGATTATCCTCCG 59.611 55.000 0.00 0.00 0.00 4.63
720 722 0.104304 GTGGCGTGATTATCCTCCGT 59.896 55.000 0.00 0.00 0.00 4.69
721 723 1.338973 GTGGCGTGATTATCCTCCGTA 59.661 52.381 0.00 0.00 0.00 4.02
722 724 1.338973 TGGCGTGATTATCCTCCGTAC 59.661 52.381 0.00 0.00 0.00 3.67
723 725 1.612463 GGCGTGATTATCCTCCGTACT 59.388 52.381 0.00 0.00 0.00 2.73
724 726 2.351544 GGCGTGATTATCCTCCGTACTC 60.352 54.545 0.00 0.00 0.00 2.59
725 727 2.351544 GCGTGATTATCCTCCGTACTCC 60.352 54.545 0.00 0.00 0.00 3.85
726 728 2.228343 CGTGATTATCCTCCGTACTCCC 59.772 54.545 0.00 0.00 0.00 4.30
727 729 2.228343 GTGATTATCCTCCGTACTCCCG 59.772 54.545 0.00 0.00 0.00 5.14
728 730 2.158564 TGATTATCCTCCGTACTCCCGT 60.159 50.000 0.00 0.00 0.00 5.28
729 731 3.072915 TGATTATCCTCCGTACTCCCGTA 59.927 47.826 0.00 0.00 0.00 4.02
730 732 3.795688 TTATCCTCCGTACTCCCGTAT 57.204 47.619 0.00 0.00 0.00 3.06
731 733 2.671896 ATCCTCCGTACTCCCGTATT 57.328 50.000 0.00 0.00 0.00 1.89
732 734 1.972872 TCCTCCGTACTCCCGTATTC 58.027 55.000 0.00 0.00 0.00 1.75
733 735 0.590195 CCTCCGTACTCCCGTATTCG 59.410 60.000 0.00 0.00 0.00 3.34
734 736 1.303309 CTCCGTACTCCCGTATTCGT 58.697 55.000 0.00 0.00 35.01 3.85
735 737 1.672881 CTCCGTACTCCCGTATTCGTT 59.327 52.381 0.00 0.00 35.01 3.85
736 738 2.872245 CTCCGTACTCCCGTATTCGTTA 59.128 50.000 0.00 0.00 35.01 3.18
737 739 3.476552 TCCGTACTCCCGTATTCGTTAT 58.523 45.455 0.00 0.00 35.01 1.89
738 740 3.498397 TCCGTACTCCCGTATTCGTTATC 59.502 47.826 0.00 0.00 35.01 1.75
739 741 3.473367 CGTACTCCCGTATTCGTTATCG 58.527 50.000 0.00 0.00 38.55 2.92
740 742 3.059597 CGTACTCCCGTATTCGTTATCGT 60.060 47.826 0.00 0.00 38.33 3.73
741 743 3.344904 ACTCCCGTATTCGTTATCGTG 57.655 47.619 0.00 0.00 38.33 4.35
742 744 2.684881 ACTCCCGTATTCGTTATCGTGT 59.315 45.455 0.00 0.00 38.33 4.49
743 745 3.876914 ACTCCCGTATTCGTTATCGTGTA 59.123 43.478 0.00 0.00 38.33 2.90
744 746 4.209452 TCCCGTATTCGTTATCGTGTAC 57.791 45.455 0.00 0.00 38.33 2.90
745 747 3.876914 TCCCGTATTCGTTATCGTGTACT 59.123 43.478 0.00 0.00 38.33 2.73
746 748 4.024893 TCCCGTATTCGTTATCGTGTACTC 60.025 45.833 0.00 0.00 38.33 2.59
747 749 4.214437 CCGTATTCGTTATCGTGTACTCC 58.786 47.826 0.00 0.00 38.33 3.85
748 750 4.214437 CGTATTCGTTATCGTGTACTCCC 58.786 47.826 0.00 0.00 38.33 4.30
749 751 3.722728 ATTCGTTATCGTGTACTCCCC 57.277 47.619 0.00 0.00 38.33 4.81
750 752 1.392589 TCGTTATCGTGTACTCCCCC 58.607 55.000 0.00 0.00 38.33 5.40
764 766 3.411517 CCCCCATCCCAGAACGCT 61.412 66.667 0.00 0.00 0.00 5.07
765 767 2.190578 CCCCATCCCAGAACGCTC 59.809 66.667 0.00 0.00 0.00 5.03
766 768 2.370445 CCCCATCCCAGAACGCTCT 61.370 63.158 0.00 0.00 0.00 4.09
767 769 1.604378 CCCATCCCAGAACGCTCTT 59.396 57.895 0.00 0.00 0.00 2.85
768 770 0.830648 CCCATCCCAGAACGCTCTTA 59.169 55.000 0.00 0.00 0.00 2.10
769 771 1.417890 CCCATCCCAGAACGCTCTTAT 59.582 52.381 0.00 0.00 0.00 1.73
770 772 2.632996 CCCATCCCAGAACGCTCTTATA 59.367 50.000 0.00 0.00 0.00 0.98
771 773 3.261897 CCCATCCCAGAACGCTCTTATAT 59.738 47.826 0.00 0.00 0.00 0.86
772 774 4.263068 CCCATCCCAGAACGCTCTTATATT 60.263 45.833 0.00 0.00 0.00 1.28
773 775 5.046591 CCCATCCCAGAACGCTCTTATATTA 60.047 44.000 0.00 0.00 0.00 0.98
774 776 5.869888 CCATCCCAGAACGCTCTTATATTAC 59.130 44.000 0.00 0.00 0.00 1.89
775 777 5.117355 TCCCAGAACGCTCTTATATTACG 57.883 43.478 0.00 0.00 0.00 3.18
776 778 4.022589 TCCCAGAACGCTCTTATATTACGG 60.023 45.833 0.00 0.00 0.00 4.02
777 779 4.235360 CCAGAACGCTCTTATATTACGGG 58.765 47.826 0.00 0.00 0.00 5.28
778 780 4.022589 CCAGAACGCTCTTATATTACGGGA 60.023 45.833 0.00 0.00 0.00 5.14
779 781 4.916249 CAGAACGCTCTTATATTACGGGAC 59.084 45.833 0.00 0.00 0.00 4.46
798 800 2.271173 GGGGGAGTAACGGGCAAG 59.729 66.667 0.00 0.00 0.00 4.01
799 801 2.295602 GGGGGAGTAACGGGCAAGA 61.296 63.158 0.00 0.00 0.00 3.02
800 802 1.632965 GGGGGAGTAACGGGCAAGAT 61.633 60.000 0.00 0.00 0.00 2.40
801 803 0.179054 GGGGAGTAACGGGCAAGATC 60.179 60.000 0.00 0.00 0.00 2.75
802 804 0.539986 GGGAGTAACGGGCAAGATCA 59.460 55.000 0.00 0.00 0.00 2.92
803 805 1.141053 GGGAGTAACGGGCAAGATCAT 59.859 52.381 0.00 0.00 0.00 2.45
804 806 2.421529 GGGAGTAACGGGCAAGATCATT 60.422 50.000 0.00 0.00 0.00 2.57
805 807 2.614057 GGAGTAACGGGCAAGATCATTG 59.386 50.000 0.00 0.00 0.00 2.82
806 808 3.270877 GAGTAACGGGCAAGATCATTGT 58.729 45.455 0.00 0.00 0.00 2.71
807 809 3.686016 AGTAACGGGCAAGATCATTGTT 58.314 40.909 0.00 0.00 0.00 2.83
808 810 3.689649 AGTAACGGGCAAGATCATTGTTC 59.310 43.478 0.00 0.00 0.00 3.18
809 811 2.198827 ACGGGCAAGATCATTGTTCA 57.801 45.000 0.00 0.00 0.00 3.18
810 812 2.513753 ACGGGCAAGATCATTGTTCAA 58.486 42.857 0.00 0.00 0.00 2.69
811 813 3.091545 ACGGGCAAGATCATTGTTCAAT 58.908 40.909 0.00 0.00 0.00 2.57
812 814 4.269183 ACGGGCAAGATCATTGTTCAATA 58.731 39.130 0.00 0.00 0.00 1.90
813 815 4.704540 ACGGGCAAGATCATTGTTCAATAA 59.295 37.500 0.00 0.00 0.00 1.40
814 816 5.184864 ACGGGCAAGATCATTGTTCAATAAA 59.815 36.000 0.00 0.00 0.00 1.40
815 817 5.745294 CGGGCAAGATCATTGTTCAATAAAG 59.255 40.000 0.00 0.00 0.00 1.85
816 818 6.404623 CGGGCAAGATCATTGTTCAATAAAGA 60.405 38.462 0.00 0.00 0.00 2.52
817 819 7.495055 GGGCAAGATCATTGTTCAATAAAGAT 58.505 34.615 0.00 0.00 0.00 2.40
818 820 8.632679 GGGCAAGATCATTGTTCAATAAAGATA 58.367 33.333 0.00 0.00 0.00 1.98
819 821 9.674824 GGCAAGATCATTGTTCAATAAAGATAG 57.325 33.333 0.00 0.00 0.00 2.08
820 822 9.178427 GCAAGATCATTGTTCAATAAAGATAGC 57.822 33.333 0.00 1.16 0.00 2.97
823 825 9.842775 AGATCATTGTTCAATAAAGATAGCTGA 57.157 29.630 0.00 0.00 0.00 4.26
837 839 8.641498 AAAGATAGCTGAATTTCAAGAAAGGA 57.359 30.769 0.00 0.00 33.32 3.36
838 840 8.641498 AAGATAGCTGAATTTCAAGAAAGGAA 57.359 30.769 0.00 0.00 33.32 3.36
839 841 8.278729 AGATAGCTGAATTTCAAGAAAGGAAG 57.721 34.615 0.00 0.46 33.32 3.46
840 842 8.105829 AGATAGCTGAATTTCAAGAAAGGAAGA 58.894 33.333 0.00 0.00 33.32 2.87
841 843 6.966534 AGCTGAATTTCAAGAAAGGAAGAA 57.033 33.333 0.01 0.00 33.32 2.52
842 844 7.352079 AGCTGAATTTCAAGAAAGGAAGAAA 57.648 32.000 0.01 0.00 34.83 2.52
843 845 7.785033 AGCTGAATTTCAAGAAAGGAAGAAAA 58.215 30.769 0.01 0.00 34.13 2.29
844 846 8.260114 AGCTGAATTTCAAGAAAGGAAGAAAAA 58.740 29.630 0.01 0.00 34.13 1.94
845 847 8.546244 GCTGAATTTCAAGAAAGGAAGAAAAAG 58.454 33.333 0.01 0.00 34.13 2.27
846 848 9.807649 CTGAATTTCAAGAAAGGAAGAAAAAGA 57.192 29.630 0.01 0.00 34.13 2.52
850 852 9.942850 ATTTCAAGAAAGGAAGAAAAAGAAACA 57.057 25.926 1.48 0.00 34.13 2.83
851 853 8.986477 TTCAAGAAAGGAAGAAAAAGAAACAG 57.014 30.769 0.00 0.00 0.00 3.16
852 854 7.035612 TCAAGAAAGGAAGAAAAAGAAACAGC 58.964 34.615 0.00 0.00 0.00 4.40
853 855 5.582550 AGAAAGGAAGAAAAAGAAACAGCG 58.417 37.500 0.00 0.00 0.00 5.18
854 856 4.983671 AAGGAAGAAAAAGAAACAGCGT 57.016 36.364 0.00 0.00 0.00 5.07
855 857 6.317893 AGAAAGGAAGAAAAAGAAACAGCGTA 59.682 34.615 0.00 0.00 0.00 4.42
856 858 5.419760 AGGAAGAAAAAGAAACAGCGTAC 57.580 39.130 0.00 0.00 0.00 3.67
857 859 4.879545 AGGAAGAAAAAGAAACAGCGTACA 59.120 37.500 0.00 0.00 0.00 2.90
858 860 4.968181 GGAAGAAAAAGAAACAGCGTACAC 59.032 41.667 0.00 0.00 0.00 2.90
859 861 4.191662 AGAAAAAGAAACAGCGTACACG 57.808 40.909 0.00 0.00 43.27 4.49
860 862 3.001939 AGAAAAAGAAACAGCGTACACGG 59.998 43.478 3.67 0.00 40.23 4.94
868 870 4.157817 GCGTACACGGTGTAGTGG 57.842 61.111 20.62 13.74 45.80 4.00
869 871 1.444895 GCGTACACGGTGTAGTGGG 60.445 63.158 20.62 11.53 45.80 4.61
870 872 1.444895 CGTACACGGTGTAGTGGGC 60.445 63.158 20.62 8.28 45.80 5.36
871 873 1.870055 CGTACACGGTGTAGTGGGCT 61.870 60.000 20.62 0.00 45.80 5.19
872 874 0.389426 GTACACGGTGTAGTGGGCTG 60.389 60.000 20.62 0.00 45.80 4.85
873 875 1.537814 TACACGGTGTAGTGGGCTGG 61.538 60.000 16.63 0.00 45.80 4.85
874 876 4.016706 ACGGTGTAGTGGGCTGGC 62.017 66.667 0.00 0.00 0.00 4.85
875 877 4.778143 CGGTGTAGTGGGCTGGCC 62.778 72.222 14.23 14.23 0.00 5.36
876 878 4.778143 GGTGTAGTGGGCTGGCCG 62.778 72.222 16.08 0.00 36.85 6.13
879 881 4.840005 GTAGTGGGCTGGCCGCTC 62.840 72.222 35.57 23.51 40.51 5.03
887 889 3.499737 CTGGCCGCTCGCGAAATT 61.500 61.111 11.33 0.00 42.83 1.82
888 890 3.039202 CTGGCCGCTCGCGAAATTT 62.039 57.895 11.33 0.00 42.83 1.82
889 891 1.701545 CTGGCCGCTCGCGAAATTTA 61.702 55.000 11.33 0.00 42.83 1.40
890 892 1.011131 GGCCGCTCGCGAAATTTAG 60.011 57.895 11.33 0.00 42.83 1.85
891 893 1.702491 GGCCGCTCGCGAAATTTAGT 61.702 55.000 11.33 0.00 42.83 2.24
892 894 0.096454 GCCGCTCGCGAAATTTAGTT 59.904 50.000 11.33 0.00 42.83 2.24
893 895 1.797964 CCGCTCGCGAAATTTAGTTG 58.202 50.000 11.33 0.00 42.83 3.16
894 896 1.171876 CGCTCGCGAAATTTAGTTGC 58.828 50.000 11.33 5.63 42.83 4.17
895 897 1.201921 CGCTCGCGAAATTTAGTTGCT 60.202 47.619 11.33 0.00 42.83 3.91
896 898 2.431906 GCTCGCGAAATTTAGTTGCTC 58.568 47.619 11.33 0.00 0.00 4.26
897 899 2.788065 GCTCGCGAAATTTAGTTGCTCC 60.788 50.000 11.33 0.00 0.00 4.70
898 900 2.415168 CTCGCGAAATTTAGTTGCTCCA 59.585 45.455 11.33 0.00 0.00 3.86
899 901 2.415168 TCGCGAAATTTAGTTGCTCCAG 59.585 45.455 6.20 0.00 0.00 3.86
900 902 2.519963 GCGAAATTTAGTTGCTCCAGC 58.480 47.619 0.13 0.00 42.50 4.85
901 903 2.162408 GCGAAATTTAGTTGCTCCAGCT 59.838 45.455 0.00 0.00 42.66 4.24
902 904 3.366374 GCGAAATTTAGTTGCTCCAGCTT 60.366 43.478 0.00 0.00 42.66 3.74
903 905 4.161333 CGAAATTTAGTTGCTCCAGCTTG 58.839 43.478 0.00 0.00 42.66 4.01
904 906 4.488879 GAAATTTAGTTGCTCCAGCTTGG 58.511 43.478 0.00 0.00 42.66 3.61
905 907 2.949177 TTTAGTTGCTCCAGCTTGGA 57.051 45.000 0.00 5.03 45.98 3.53
906 908 2.185004 TTAGTTGCTCCAGCTTGGAC 57.815 50.000 0.00 1.10 42.67 4.02
907 909 0.324943 TAGTTGCTCCAGCTTGGACC 59.675 55.000 0.00 0.00 42.67 4.46
908 910 1.228245 GTTGCTCCAGCTTGGACCA 60.228 57.895 0.00 0.00 42.67 4.02
909 911 0.610232 GTTGCTCCAGCTTGGACCAT 60.610 55.000 0.00 0.00 42.67 3.55
910 912 0.609957 TTGCTCCAGCTTGGACCATG 60.610 55.000 0.00 0.00 42.67 3.66
911 913 1.751927 GCTCCAGCTTGGACCATGG 60.752 63.158 11.19 11.19 42.67 3.66
912 914 1.687612 CTCCAGCTTGGACCATGGT 59.312 57.895 19.89 19.89 42.67 3.55
913 915 0.038744 CTCCAGCTTGGACCATGGTT 59.961 55.000 20.85 2.15 42.67 3.67
914 916 0.251297 TCCAGCTTGGACCATGGTTG 60.251 55.000 20.85 11.97 42.67 3.77
915 917 3.625571 TCCAGCTTGGACCATGGTTGG 62.626 57.143 20.85 20.76 42.67 3.77
955 957 0.542702 CCACTTTGGGCCCATCTTGT 60.543 55.000 29.23 18.67 32.67 3.16
956 958 0.604578 CACTTTGGGCCCATCTTGTG 59.395 55.000 29.23 25.29 0.00 3.33
1284 1311 2.357517 CTCGACTGCCGTGGCTTT 60.358 61.111 12.84 0.00 42.51 3.51
1571 1598 1.581447 GCTGGGTTTCTTCCAAGCG 59.419 57.895 0.00 0.00 43.50 4.68
1759 1786 4.783621 TGCACAGCCTCATCGCCC 62.784 66.667 0.00 0.00 0.00 6.13
1877 1904 1.949525 TCAACTTCAGAACTGCAAGGC 59.050 47.619 13.78 0.00 39.30 4.35
2028 2055 1.507140 TCCTTACTGATTGGGGCGAT 58.493 50.000 0.00 0.00 0.00 4.58
2154 2181 2.033299 CCGTGTTTGTCATCTGCACTTT 59.967 45.455 0.00 0.00 0.00 2.66
2203 2230 1.453015 ATTTAGGGATTGCGCGCCA 60.453 52.632 30.77 20.09 0.00 5.69
2254 2281 6.486320 TGTCAAGATTTTAGCTGTCAATGTCA 59.514 34.615 0.00 0.00 0.00 3.58
2289 2316 8.900781 AGTTTGGATAATCTTCTTGACATGATG 58.099 33.333 0.00 0.00 0.00 3.07
2305 2332 5.446860 ACATGATGAGATTCTTTCCATGCT 58.553 37.500 16.30 7.24 34.84 3.79
2345 2372 2.108952 AGGTGGCTGTTTCTTCCTTGAT 59.891 45.455 0.00 0.00 0.00 2.57
2356 2383 7.402054 TGTTTCTTCCTTGATAATTCCTAGCA 58.598 34.615 0.00 0.00 0.00 3.49
2362 2389 6.591935 TCCTTGATAATTCCTAGCATCGTTT 58.408 36.000 0.00 0.00 0.00 3.60
2367 2394 7.217200 TGATAATTCCTAGCATCGTTTAGCTT 58.783 34.615 0.00 0.00 42.05 3.74
2374 2401 5.294552 CCTAGCATCGTTTAGCTTAGCTTTT 59.705 40.000 13.44 0.00 42.05 2.27
2460 2493 4.502950 GGGTGAGAAAAATTTGTGGCATCA 60.503 41.667 0.00 0.00 0.00 3.07
2481 2514 2.770164 AAACACCGGGATCTTCTCAG 57.230 50.000 6.32 0.00 0.00 3.35
2623 2656 0.613260 TTGAGGCCAGCTTGTACGAT 59.387 50.000 5.01 0.00 0.00 3.73
2798 2831 4.605640 AGATGTTGAAATGGGTTTGGTG 57.394 40.909 0.00 0.00 0.00 4.17
2818 2851 5.189180 GGTGAGTCAGGAATTATCTTTGCT 58.811 41.667 0.00 0.00 0.00 3.91
2838 2871 6.245115 TGCTTATCTCATTTGTGTTCTGTG 57.755 37.500 0.00 0.00 0.00 3.66
2839 2872 5.997129 TGCTTATCTCATTTGTGTTCTGTGA 59.003 36.000 0.00 0.00 0.00 3.58
2846 2879 6.599244 TCTCATTTGTGTTCTGTGAAGACTTT 59.401 34.615 8.61 0.00 0.00 2.66
2861 2894 6.645827 GTGAAGACTTTCTTAGTACCCTTGTC 59.354 42.308 0.00 0.00 36.73 3.18
2905 2938 6.980397 ACAATCTTGTGTCATTTCTTTTGTCC 59.020 34.615 0.00 0.00 40.49 4.02
2914 2947 5.915196 GTCATTTCTTTTGTCCTACACTTGC 59.085 40.000 0.00 0.00 0.00 4.01
2952 2985 6.060028 TCTCACTGAAAAGTTTTGGATTCG 57.940 37.500 5.36 0.00 0.00 3.34
3060 3093 3.198409 TGCAGTGTCATTCTTCAGTGT 57.802 42.857 0.00 0.00 37.34 3.55
3080 3114 6.210584 CAGTGTTAATTGAAGGGTGGGTATTT 59.789 38.462 0.00 0.00 0.00 1.40
3140 3174 7.997482 AGGAAAAGGAAACAACTTAACTCTTC 58.003 34.615 0.00 0.00 0.00 2.87
3394 3432 5.294060 ACAGGTGCAATTGTGTTGAAATTTC 59.706 36.000 11.41 11.41 0.00 2.17
3448 3486 3.181445 TGGGTGTTCTATGCACTGTCTTT 60.181 43.478 0.00 0.00 37.07 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.851222 AAGGTTATATGAATTCTCGCAGTG 57.149 37.500 7.05 0.00 0.00 3.66
1 2 7.171678 GCTAAAGGTTATATGAATTCTCGCAGT 59.828 37.037 7.05 0.00 0.00 4.40
17 18 0.971959 TCCCGAGCCGCTAAAGGTTA 60.972 55.000 0.00 0.00 0.00 2.85
19 20 2.682494 TCCCGAGCCGCTAAAGGT 60.682 61.111 0.00 0.00 0.00 3.50
20 21 2.107141 CTCCCGAGCCGCTAAAGG 59.893 66.667 0.00 0.00 0.00 3.11
33 34 1.389609 TACAACTCCCGATCGCTCCC 61.390 60.000 10.32 0.00 0.00 4.30
48 49 2.367567 AGAAGTTGCTCCGGAGTTACAA 59.632 45.455 31.43 23.23 0.00 2.41
50 51 2.745515 AGAAGTTGCTCCGGAGTTAC 57.254 50.000 31.43 26.49 0.00 2.50
52 53 2.222027 CAAAGAAGTTGCTCCGGAGTT 58.778 47.619 31.43 18.41 0.00 3.01
108 109 7.969536 ACCATAATAGTCTCAATTCCATTCG 57.030 36.000 0.00 0.00 0.00 3.34
134 135 2.551721 CCCACCAGAGATACCATCATGC 60.552 54.545 0.00 0.00 0.00 4.06
138 139 3.007398 GTGATCCCACCAGAGATACCATC 59.993 52.174 0.00 0.00 37.33 3.51
154 155 4.864247 CCATGTGAAATTTTTCGGTGATCC 59.136 41.667 0.00 0.00 40.01 3.36
198 199 6.464749 CCCTTTTTATACTTATGGCCGACCTA 60.465 42.308 0.00 0.00 36.63 3.08
201 202 5.128205 ACCCTTTTTATACTTATGGCCGAC 58.872 41.667 0.00 0.00 0.00 4.79
212 213 7.151976 AGCATTCAACACAACCCTTTTTATAC 58.848 34.615 0.00 0.00 0.00 1.47
217 218 4.486125 AAGCATTCAACACAACCCTTTT 57.514 36.364 0.00 0.00 0.00 2.27
220 221 2.102925 CCAAAGCATTCAACACAACCCT 59.897 45.455 0.00 0.00 0.00 4.34
229 230 5.726980 ATCTTAACAGCCAAAGCATTCAA 57.273 34.783 0.00 0.00 43.56 2.69
244 245 6.490566 TCCAAACGGAGCTTTTATCTTAAC 57.509 37.500 0.00 0.00 0.00 2.01
245 246 7.175990 ACATTCCAAACGGAGCTTTTATCTTAA 59.824 33.333 0.00 0.00 32.88 1.85
286 288 3.659786 TGTTTCATAGTCCTCACCGTTG 58.340 45.455 0.00 0.00 0.00 4.10
292 294 9.112725 CATCAATGTTATGTTTCATAGTCCTCA 57.887 33.333 0.00 0.00 0.00 3.86
302 304 7.566858 AAAACTCGCATCAATGTTATGTTTC 57.433 32.000 0.00 0.00 0.00 2.78
319 321 0.785979 CACGTCCGGGTAAAAACTCG 59.214 55.000 0.00 0.00 0.00 4.18
332 334 4.717313 GCTCCAACCCCCACGTCC 62.717 72.222 0.00 0.00 0.00 4.79
345 347 1.518792 GTAAAGCTCCCGTCGCTCC 60.519 63.158 0.00 0.00 36.56 4.70
386 388 8.239314 TCTTCAAAAGAACATGATGCAACTATC 58.761 33.333 0.00 0.00 33.83 2.08
389 391 6.211515 GTCTTCAAAAGAACATGATGCAACT 58.788 36.000 0.00 0.00 39.67 3.16
413 415 0.726827 ATGCAACGTCTATGGCAACG 59.273 50.000 8.54 8.54 44.22 4.10
418 420 5.333645 GCTTCTATTGATGCAACGTCTATGG 60.334 44.000 9.58 0.00 41.34 2.74
422 424 3.599343 TGCTTCTATTGATGCAACGTCT 58.401 40.909 13.79 0.00 46.01 4.18
444 446 3.695830 TGACCCTTCCAATAGTGTGAC 57.304 47.619 0.00 0.00 0.00 3.67
447 449 3.846588 AGTCATGACCCTTCCAATAGTGT 59.153 43.478 22.21 0.00 0.00 3.55
452 454 2.225091 TGCAAGTCATGACCCTTCCAAT 60.225 45.455 22.21 0.00 0.00 3.16
476 478 3.012518 CACTGCTAAGATCCCCAACAAG 58.987 50.000 0.00 0.00 0.00 3.16
491 493 3.699894 CTCTCCACCGCCACTGCT 61.700 66.667 0.00 0.00 34.43 4.24
492 494 2.167398 TTACTCTCCACCGCCACTGC 62.167 60.000 0.00 0.00 0.00 4.40
494 496 1.207329 GAATTACTCTCCACCGCCACT 59.793 52.381 0.00 0.00 0.00 4.00
505 507 9.829507 CTTGAACTATCTCCATTGAATTACTCT 57.170 33.333 0.00 0.00 0.00 3.24
506 508 9.606631 ACTTGAACTATCTCCATTGAATTACTC 57.393 33.333 0.00 0.00 0.00 2.59
537 539 1.609072 TCGATACTCGGCTGGATCAAG 59.391 52.381 0.00 0.00 40.88 3.02
547 549 3.075148 TCTCCTTATGCTCGATACTCGG 58.925 50.000 0.00 0.00 40.88 4.63
565 567 3.929610 GCAGTCATTAGTCACCACTTCTC 59.070 47.826 0.00 0.00 33.62 2.87
579 581 0.322546 GAAACCTCCCGGCAGTCATT 60.323 55.000 0.00 0.00 0.00 2.57
583 585 1.838073 ATTCGAAACCTCCCGGCAGT 61.838 55.000 0.00 0.00 0.00 4.40
587 589 0.252197 AGGAATTCGAAACCTCCCGG 59.748 55.000 17.68 0.00 0.00 5.73
605 607 1.702886 CTATAGTCGCCATGCCGAAG 58.297 55.000 0.00 0.00 39.17 3.79
627 629 0.250510 TGCTTTCACGGGCACATGTA 60.251 50.000 0.00 0.00 33.23 2.29
630 632 0.244450 CATTGCTTTCACGGGCACAT 59.756 50.000 0.00 0.00 38.23 3.21
636 638 2.535166 CACAACAACATTGCTTTCACGG 59.465 45.455 0.00 0.00 0.00 4.94
639 641 2.191802 CGCACAACAACATTGCTTTCA 58.808 42.857 0.00 0.00 33.90 2.69
643 645 1.838913 GAACGCACAACAACATTGCT 58.161 45.000 0.00 0.00 33.90 3.91
652 654 1.722507 GAGCAAGCGAACGCACAAC 60.723 57.895 20.66 7.54 44.88 3.32
653 655 2.631428 GAGCAAGCGAACGCACAA 59.369 55.556 20.66 0.00 44.88 3.33
654 656 3.701530 CGAGCAAGCGAACGCACA 61.702 61.111 20.66 0.00 44.88 4.57
655 657 3.340721 CTCGAGCAAGCGAACGCAC 62.341 63.158 20.66 9.86 44.88 5.34
656 658 3.105782 CTCGAGCAAGCGAACGCA 61.106 61.111 20.66 0.00 44.88 5.24
657 659 4.491328 GCTCGAGCAAGCGAACGC 62.491 66.667 31.91 11.31 40.13 4.84
667 669 4.468095 TTTCTTGTTAACTTGCTCGAGC 57.532 40.909 30.42 30.42 42.50 5.03
668 670 6.049263 AGTTTTCTTGTTAACTTGCTCGAG 57.951 37.500 8.45 8.45 30.72 4.04
669 671 7.656137 AGATAGTTTTCTTGTTAACTTGCTCGA 59.344 33.333 7.22 0.00 36.16 4.04
670 672 7.742089 CAGATAGTTTTCTTGTTAACTTGCTCG 59.258 37.037 7.22 0.00 36.16 5.03
671 673 8.774586 TCAGATAGTTTTCTTGTTAACTTGCTC 58.225 33.333 7.22 0.00 36.16 4.26
672 674 8.677148 TCAGATAGTTTTCTTGTTAACTTGCT 57.323 30.769 7.22 0.00 36.16 3.91
673 675 8.017946 CCTCAGATAGTTTTCTTGTTAACTTGC 58.982 37.037 7.22 0.00 36.16 4.01
674 676 9.273016 TCCTCAGATAGTTTTCTTGTTAACTTG 57.727 33.333 7.22 0.00 36.16 3.16
675 677 9.495572 CTCCTCAGATAGTTTTCTTGTTAACTT 57.504 33.333 7.22 0.00 36.16 2.66
676 678 8.652290 ACTCCTCAGATAGTTTTCTTGTTAACT 58.348 33.333 7.22 0.00 38.16 2.24
677 679 8.713271 CACTCCTCAGATAGTTTTCTTGTTAAC 58.287 37.037 0.00 0.00 0.00 2.01
678 680 7.878127 CCACTCCTCAGATAGTTTTCTTGTTAA 59.122 37.037 0.00 0.00 0.00 2.01
679 681 7.386851 CCACTCCTCAGATAGTTTTCTTGTTA 58.613 38.462 0.00 0.00 0.00 2.41
680 682 6.234177 CCACTCCTCAGATAGTTTTCTTGTT 58.766 40.000 0.00 0.00 0.00 2.83
681 683 5.799213 CCACTCCTCAGATAGTTTTCTTGT 58.201 41.667 0.00 0.00 0.00 3.16
682 684 4.633565 GCCACTCCTCAGATAGTTTTCTTG 59.366 45.833 0.00 0.00 0.00 3.02
683 685 4.621747 CGCCACTCCTCAGATAGTTTTCTT 60.622 45.833 0.00 0.00 0.00 2.52
684 686 3.118956 CGCCACTCCTCAGATAGTTTTCT 60.119 47.826 0.00 0.00 0.00 2.52
685 687 3.190874 CGCCACTCCTCAGATAGTTTTC 58.809 50.000 0.00 0.00 0.00 2.29
686 688 2.567615 ACGCCACTCCTCAGATAGTTTT 59.432 45.455 0.00 0.00 0.00 2.43
687 689 2.093973 CACGCCACTCCTCAGATAGTTT 60.094 50.000 0.00 0.00 0.00 2.66
688 690 1.478510 CACGCCACTCCTCAGATAGTT 59.521 52.381 0.00 0.00 0.00 2.24
689 691 1.107114 CACGCCACTCCTCAGATAGT 58.893 55.000 0.00 0.00 0.00 2.12
690 692 1.393603 TCACGCCACTCCTCAGATAG 58.606 55.000 0.00 0.00 0.00 2.08
691 693 2.073252 ATCACGCCACTCCTCAGATA 57.927 50.000 0.00 0.00 0.00 1.98
692 694 1.198713 AATCACGCCACTCCTCAGAT 58.801 50.000 0.00 0.00 0.00 2.90
693 695 1.847328 TAATCACGCCACTCCTCAGA 58.153 50.000 0.00 0.00 0.00 3.27
694 696 2.546795 GGATAATCACGCCACTCCTCAG 60.547 54.545 0.00 0.00 0.00 3.35
695 697 1.412710 GGATAATCACGCCACTCCTCA 59.587 52.381 0.00 0.00 0.00 3.86
696 698 1.689273 AGGATAATCACGCCACTCCTC 59.311 52.381 0.00 0.00 0.00 3.71
697 699 1.689273 GAGGATAATCACGCCACTCCT 59.311 52.381 0.00 0.00 35.86 3.69
698 700 1.270358 GGAGGATAATCACGCCACTCC 60.270 57.143 0.00 0.00 36.60 3.85
699 701 1.603172 CGGAGGATAATCACGCCACTC 60.603 57.143 0.00 0.00 0.00 3.51
700 702 0.389391 CGGAGGATAATCACGCCACT 59.611 55.000 0.00 0.00 0.00 4.00
701 703 0.104304 ACGGAGGATAATCACGCCAC 59.896 55.000 0.00 0.00 0.00 5.01
702 704 1.338973 GTACGGAGGATAATCACGCCA 59.661 52.381 0.00 0.00 0.00 5.69
703 705 1.612463 AGTACGGAGGATAATCACGCC 59.388 52.381 0.00 0.00 0.00 5.68
704 706 2.351544 GGAGTACGGAGGATAATCACGC 60.352 54.545 0.00 0.00 0.00 5.34
705 707 2.228343 GGGAGTACGGAGGATAATCACG 59.772 54.545 0.00 0.00 0.00 4.35
706 708 2.228343 CGGGAGTACGGAGGATAATCAC 59.772 54.545 0.00 0.00 0.00 3.06
707 709 2.158564 ACGGGAGTACGGAGGATAATCA 60.159 50.000 0.00 0.00 44.60 2.57
708 710 2.512705 ACGGGAGTACGGAGGATAATC 58.487 52.381 0.00 0.00 44.60 1.75
709 711 2.671896 ACGGGAGTACGGAGGATAAT 57.328 50.000 0.00 0.00 44.60 1.28
715 717 7.570139 CGATAACGAATACGGGAGTACGGAG 62.570 52.000 0.00 0.00 44.81 4.63
716 718 5.847367 CGATAACGAATACGGGAGTACGGA 61.847 50.000 0.00 0.00 44.81 4.69
717 719 3.665323 CGATAACGAATACGGGAGTACGG 60.665 52.174 0.00 0.00 44.81 4.02
718 720 3.059597 ACGATAACGAATACGGGAGTACG 60.060 47.826 0.00 0.00 44.81 3.67
719 721 4.214437 CACGATAACGAATACGGGAGTAC 58.786 47.826 0.00 0.00 44.81 2.73
720 722 3.876914 ACACGATAACGAATACGGGAGTA 59.123 43.478 0.00 0.00 45.56 2.59
721 723 2.684881 ACACGATAACGAATACGGGAGT 59.315 45.455 0.00 0.00 44.38 3.85
722 724 3.344904 ACACGATAACGAATACGGGAG 57.655 47.619 0.00 0.00 44.46 4.30
723 725 3.876914 AGTACACGATAACGAATACGGGA 59.123 43.478 0.00 0.00 44.46 5.14
724 726 4.214437 GAGTACACGATAACGAATACGGG 58.786 47.826 0.00 0.00 44.46 5.28
725 727 4.214437 GGAGTACACGATAACGAATACGG 58.786 47.826 0.00 0.00 44.46 4.02
726 728 4.214437 GGGAGTACACGATAACGAATACG 58.786 47.826 0.00 0.00 42.66 3.06
727 729 4.540824 GGGGAGTACACGATAACGAATAC 58.459 47.826 0.00 1.40 42.66 1.89
728 730 3.569701 GGGGGAGTACACGATAACGAATA 59.430 47.826 0.00 0.00 42.66 1.75
729 731 2.363359 GGGGGAGTACACGATAACGAAT 59.637 50.000 0.00 0.00 42.66 3.34
730 732 1.750778 GGGGGAGTACACGATAACGAA 59.249 52.381 0.00 0.00 42.66 3.85
731 733 1.392589 GGGGGAGTACACGATAACGA 58.607 55.000 0.00 0.00 42.66 3.85
732 734 3.953201 GGGGGAGTACACGATAACG 57.047 57.895 0.00 0.00 45.75 3.18
747 749 3.406595 GAGCGTTCTGGGATGGGGG 62.407 68.421 0.00 0.00 0.00 5.40
748 750 1.915078 AAGAGCGTTCTGGGATGGGG 61.915 60.000 1.31 0.00 32.79 4.96
749 751 0.830648 TAAGAGCGTTCTGGGATGGG 59.169 55.000 1.31 0.00 32.79 4.00
750 752 2.918712 ATAAGAGCGTTCTGGGATGG 57.081 50.000 1.31 0.00 32.79 3.51
751 753 5.573282 CGTAATATAAGAGCGTTCTGGGATG 59.427 44.000 1.31 0.00 32.79 3.51
752 754 5.336531 CCGTAATATAAGAGCGTTCTGGGAT 60.337 44.000 1.31 0.00 32.79 3.85
753 755 4.022589 CCGTAATATAAGAGCGTTCTGGGA 60.023 45.833 1.31 0.00 32.79 4.37
754 756 4.235360 CCGTAATATAAGAGCGTTCTGGG 58.765 47.826 1.31 0.00 32.79 4.45
755 757 4.022589 TCCCGTAATATAAGAGCGTTCTGG 60.023 45.833 1.31 0.00 32.79 3.86
756 758 4.916249 GTCCCGTAATATAAGAGCGTTCTG 59.084 45.833 1.31 0.00 32.79 3.02
757 759 4.320057 CGTCCCGTAATATAAGAGCGTTCT 60.320 45.833 0.00 0.00 34.29 3.01
758 760 3.910767 CGTCCCGTAATATAAGAGCGTTC 59.089 47.826 0.00 0.00 0.00 3.95
759 761 3.304928 CCGTCCCGTAATATAAGAGCGTT 60.305 47.826 0.00 0.00 0.00 4.84
760 762 2.227388 CCGTCCCGTAATATAAGAGCGT 59.773 50.000 0.00 0.00 0.00 5.07
761 763 2.415090 CCCGTCCCGTAATATAAGAGCG 60.415 54.545 0.00 0.00 0.00 5.03
762 764 2.094338 CCCCGTCCCGTAATATAAGAGC 60.094 54.545 0.00 0.00 0.00 4.09
763 765 2.494870 CCCCCGTCCCGTAATATAAGAG 59.505 54.545 0.00 0.00 0.00 2.85
764 766 2.528564 CCCCCGTCCCGTAATATAAGA 58.471 52.381 0.00 0.00 0.00 2.10
781 783 1.632965 ATCTTGCCCGTTACTCCCCC 61.633 60.000 0.00 0.00 0.00 5.40
782 784 0.179054 GATCTTGCCCGTTACTCCCC 60.179 60.000 0.00 0.00 0.00 4.81
783 785 0.539986 TGATCTTGCCCGTTACTCCC 59.460 55.000 0.00 0.00 0.00 4.30
784 786 2.614057 CAATGATCTTGCCCGTTACTCC 59.386 50.000 0.00 0.00 0.00 3.85
785 787 3.270877 ACAATGATCTTGCCCGTTACTC 58.729 45.455 0.00 0.00 0.00 2.59
786 788 3.350219 ACAATGATCTTGCCCGTTACT 57.650 42.857 0.00 0.00 0.00 2.24
787 789 3.438781 TGAACAATGATCTTGCCCGTTAC 59.561 43.478 0.00 0.00 0.00 2.50
788 790 3.680490 TGAACAATGATCTTGCCCGTTA 58.320 40.909 0.00 0.00 0.00 3.18
789 791 2.513753 TGAACAATGATCTTGCCCGTT 58.486 42.857 0.00 0.00 0.00 4.44
790 792 2.198827 TGAACAATGATCTTGCCCGT 57.801 45.000 0.00 0.00 0.00 5.28
791 793 3.788333 ATTGAACAATGATCTTGCCCG 57.212 42.857 0.00 0.00 0.00 6.13
792 794 6.866480 TCTTTATTGAACAATGATCTTGCCC 58.134 36.000 9.87 0.00 32.50 5.36
793 795 9.674824 CTATCTTTATTGAACAATGATCTTGCC 57.325 33.333 9.87 0.00 32.50 4.52
794 796 9.178427 GCTATCTTTATTGAACAATGATCTTGC 57.822 33.333 9.87 6.68 32.50 4.01
797 799 9.842775 TCAGCTATCTTTATTGAACAATGATCT 57.157 29.630 9.87 0.00 32.50 2.75
811 813 9.739276 TCCTTTCTTGAAATTCAGCTATCTTTA 57.261 29.630 0.00 0.00 0.00 1.85
812 814 8.641498 TCCTTTCTTGAAATTCAGCTATCTTT 57.359 30.769 0.00 0.00 0.00 2.52
813 815 8.641498 TTCCTTTCTTGAAATTCAGCTATCTT 57.359 30.769 0.00 0.00 0.00 2.40
814 816 8.105829 TCTTCCTTTCTTGAAATTCAGCTATCT 58.894 33.333 0.00 0.00 0.00 1.98
815 817 8.273780 TCTTCCTTTCTTGAAATTCAGCTATC 57.726 34.615 0.00 0.00 0.00 2.08
816 818 8.641498 TTCTTCCTTTCTTGAAATTCAGCTAT 57.359 30.769 0.00 0.00 0.00 2.97
817 819 8.463930 TTTCTTCCTTTCTTGAAATTCAGCTA 57.536 30.769 0.00 0.00 0.00 3.32
818 820 6.966534 TTCTTCCTTTCTTGAAATTCAGCT 57.033 33.333 0.00 0.00 0.00 4.24
819 821 8.424274 TTTTTCTTCCTTTCTTGAAATTCAGC 57.576 30.769 0.00 0.00 0.00 4.26
820 822 9.807649 TCTTTTTCTTCCTTTCTTGAAATTCAG 57.192 29.630 0.00 0.00 0.00 3.02
824 826 9.942850 TGTTTCTTTTTCTTCCTTTCTTGAAAT 57.057 25.926 0.00 0.00 0.00 2.17
825 827 9.423061 CTGTTTCTTTTTCTTCCTTTCTTGAAA 57.577 29.630 0.00 0.00 0.00 2.69
826 828 7.545615 GCTGTTTCTTTTTCTTCCTTTCTTGAA 59.454 33.333 0.00 0.00 0.00 2.69
827 829 7.035612 GCTGTTTCTTTTTCTTCCTTTCTTGA 58.964 34.615 0.00 0.00 0.00 3.02
828 830 6.020360 CGCTGTTTCTTTTTCTTCCTTTCTTG 60.020 38.462 0.00 0.00 0.00 3.02
829 831 6.036470 CGCTGTTTCTTTTTCTTCCTTTCTT 58.964 36.000 0.00 0.00 0.00 2.52
830 832 5.125578 ACGCTGTTTCTTTTTCTTCCTTTCT 59.874 36.000 0.00 0.00 0.00 2.52
831 833 5.340803 ACGCTGTTTCTTTTTCTTCCTTTC 58.659 37.500 0.00 0.00 0.00 2.62
832 834 5.324784 ACGCTGTTTCTTTTTCTTCCTTT 57.675 34.783 0.00 0.00 0.00 3.11
833 835 4.983671 ACGCTGTTTCTTTTTCTTCCTT 57.016 36.364 0.00 0.00 0.00 3.36
834 836 4.879545 TGTACGCTGTTTCTTTTTCTTCCT 59.120 37.500 0.00 0.00 0.00 3.36
835 837 4.968181 GTGTACGCTGTTTCTTTTTCTTCC 59.032 41.667 0.00 0.00 0.00 3.46
836 838 4.664851 CGTGTACGCTGTTTCTTTTTCTTC 59.335 41.667 4.67 0.00 0.00 2.87
837 839 4.495184 CCGTGTACGCTGTTTCTTTTTCTT 60.495 41.667 4.67 0.00 38.18 2.52
838 840 3.001939 CCGTGTACGCTGTTTCTTTTTCT 59.998 43.478 4.67 0.00 38.18 2.52
839 841 3.242511 ACCGTGTACGCTGTTTCTTTTTC 60.243 43.478 4.67 0.00 38.18 2.29
840 842 2.679336 ACCGTGTACGCTGTTTCTTTTT 59.321 40.909 4.67 0.00 38.18 1.94
841 843 2.031191 CACCGTGTACGCTGTTTCTTTT 59.969 45.455 4.67 0.00 38.18 2.27
842 844 1.595794 CACCGTGTACGCTGTTTCTTT 59.404 47.619 4.67 0.00 38.18 2.52
843 845 1.214367 CACCGTGTACGCTGTTTCTT 58.786 50.000 4.67 0.00 38.18 2.52
844 846 0.103572 ACACCGTGTACGCTGTTTCT 59.896 50.000 1.18 0.00 34.89 2.52
845 847 1.717645 CTACACCGTGTACGCTGTTTC 59.282 52.381 7.32 0.00 38.81 2.78
846 848 1.067516 ACTACACCGTGTACGCTGTTT 59.932 47.619 7.32 1.26 38.81 2.83
847 849 0.670162 ACTACACCGTGTACGCTGTT 59.330 50.000 7.32 0.33 38.81 3.16
848 850 0.039798 CACTACACCGTGTACGCTGT 60.040 55.000 7.32 9.88 40.70 4.40
849 851 0.731514 CCACTACACCGTGTACGCTG 60.732 60.000 7.32 0.00 38.18 5.18
850 852 1.582968 CCACTACACCGTGTACGCT 59.417 57.895 7.32 0.00 38.18 5.07
851 853 1.444895 CCCACTACACCGTGTACGC 60.445 63.158 7.32 0.00 38.18 4.42
852 854 1.444895 GCCCACTACACCGTGTACG 60.445 63.158 7.32 6.88 39.44 3.67
853 855 0.389426 CAGCCCACTACACCGTGTAC 60.389 60.000 7.32 0.00 33.07 2.90
854 856 1.537814 CCAGCCCACTACACCGTGTA 61.538 60.000 10.92 10.92 33.07 2.90
855 857 2.741092 CAGCCCACTACACCGTGT 59.259 61.111 9.58 9.58 33.07 4.49
856 858 2.047274 CCAGCCCACTACACCGTG 60.047 66.667 0.00 0.00 34.71 4.94
857 859 4.016706 GCCAGCCCACTACACCGT 62.017 66.667 0.00 0.00 0.00 4.83
858 860 4.778143 GGCCAGCCCACTACACCG 62.778 72.222 0.00 0.00 0.00 4.94
859 861 4.778143 CGGCCAGCCCACTACACC 62.778 72.222 2.24 0.00 0.00 4.16
870 872 1.701545 TAAATTTCGCGAGCGGCCAG 61.702 55.000 17.68 0.00 38.94 4.85
871 873 1.701545 CTAAATTTCGCGAGCGGCCA 61.702 55.000 17.68 2.30 38.94 5.36
872 874 1.011131 CTAAATTTCGCGAGCGGCC 60.011 57.895 17.68 0.00 38.94 6.13
873 875 0.096454 AACTAAATTTCGCGAGCGGC 59.904 50.000 17.68 0.00 40.25 6.53
874 876 1.797964 CAACTAAATTTCGCGAGCGG 58.202 50.000 17.68 2.00 40.25 5.52
875 877 1.171876 GCAACTAAATTTCGCGAGCG 58.828 50.000 9.59 11.64 41.35 5.03
876 878 2.431906 GAGCAACTAAATTTCGCGAGC 58.568 47.619 9.59 5.94 0.00 5.03
877 879 2.415168 TGGAGCAACTAAATTTCGCGAG 59.585 45.455 9.59 0.00 0.00 5.03
878 880 2.415168 CTGGAGCAACTAAATTTCGCGA 59.585 45.455 3.71 3.71 0.00 5.87
879 881 2.774007 CTGGAGCAACTAAATTTCGCG 58.226 47.619 0.00 0.00 0.00 5.87
880 882 2.162408 AGCTGGAGCAACTAAATTTCGC 59.838 45.455 0.65 0.00 45.16 4.70
881 883 4.161333 CAAGCTGGAGCAACTAAATTTCG 58.839 43.478 0.65 0.00 45.16 3.46
882 884 4.218417 TCCAAGCTGGAGCAACTAAATTTC 59.782 41.667 0.65 0.00 42.67 2.17
883 885 4.151883 TCCAAGCTGGAGCAACTAAATTT 58.848 39.130 0.65 0.00 42.67 1.82
884 886 3.766545 TCCAAGCTGGAGCAACTAAATT 58.233 40.909 0.65 0.00 42.67 1.82
885 887 3.439857 TCCAAGCTGGAGCAACTAAAT 57.560 42.857 0.65 0.00 42.67 1.40
886 888 2.949177 TCCAAGCTGGAGCAACTAAA 57.051 45.000 0.65 0.00 42.67 1.85
895 897 0.251297 CAACCATGGTCCAAGCTGGA 60.251 55.000 20.07 0.00 45.98 3.86
896 898 1.252904 CCAACCATGGTCCAAGCTGG 61.253 60.000 20.07 17.11 42.18 4.85
897 899 1.252904 CCCAACCATGGTCCAAGCTG 61.253 60.000 20.07 11.53 46.01 4.24
898 900 1.077265 CCCAACCATGGTCCAAGCT 59.923 57.895 20.07 0.00 46.01 3.74
899 901 2.649129 GCCCAACCATGGTCCAAGC 61.649 63.158 20.07 15.06 46.01 4.01
900 902 1.228831 TGCCCAACCATGGTCCAAG 60.229 57.895 20.07 8.78 46.01 3.61
901 903 1.228831 CTGCCCAACCATGGTCCAA 60.229 57.895 20.07 1.65 46.01 3.53
902 904 2.440147 CTGCCCAACCATGGTCCA 59.560 61.111 20.07 12.02 46.01 4.02
903 905 2.362889 CCTGCCCAACCATGGTCC 60.363 66.667 20.07 7.80 46.01 4.46
904 906 3.070576 GCCTGCCCAACCATGGTC 61.071 66.667 20.07 6.05 46.01 4.02
907 909 3.443045 GACGCCTGCCCAACCATG 61.443 66.667 0.00 0.00 0.00 3.66
908 910 4.740822 GGACGCCTGCCCAACCAT 62.741 66.667 0.00 0.00 0.00 3.55
910 912 2.830186 TATTGGACGCCTGCCCAACC 62.830 60.000 0.00 0.00 44.29 3.77
911 913 0.751643 ATATTGGACGCCTGCCCAAC 60.752 55.000 0.00 0.00 44.29 3.77
912 914 0.465460 GATATTGGACGCCTGCCCAA 60.465 55.000 0.00 0.00 45.40 4.12
913 915 1.148273 GATATTGGACGCCTGCCCA 59.852 57.895 0.00 0.00 0.00 5.36
914 916 0.179018 AAGATATTGGACGCCTGCCC 60.179 55.000 0.00 0.00 0.00 5.36
915 917 0.947244 CAAGATATTGGACGCCTGCC 59.053 55.000 0.00 0.00 0.00 4.85
916 918 0.947244 CCAAGATATTGGACGCCTGC 59.053 55.000 14.13 0.00 44.82 4.85
917 919 0.947244 GCCAAGATATTGGACGCCTG 59.053 55.000 23.24 0.00 44.82 4.85
918 920 0.179018 GGCCAAGATATTGGACGCCT 60.179 55.000 23.24 0.00 44.82 5.52
927 929 1.780503 GCCCAAAGTGGCCAAGATAT 58.219 50.000 7.24 0.00 46.11 1.63
941 943 0.539438 GTGTCACAAGATGGGCCCAA 60.539 55.000 32.58 13.16 0.00 4.12
955 957 2.557317 GTTTGGTCCTTTCTCGTGTCA 58.443 47.619 0.00 0.00 0.00 3.58
956 958 1.525619 CGTTTGGTCCTTTCTCGTGTC 59.474 52.381 0.00 0.00 0.00 3.67
1440 1467 3.814268 CAATTCAGGGCGGTGGCG 61.814 66.667 0.00 0.00 41.24 5.69
1441 1468 3.451894 CCAATTCAGGGCGGTGGC 61.452 66.667 0.00 0.00 38.90 5.01
1442 1469 2.035626 ACCAATTCAGGGCGGTGG 59.964 61.111 0.00 0.00 35.39 4.61
1443 1470 2.342650 CCACCAATTCAGGGCGGTG 61.343 63.158 0.00 0.00 46.93 4.94
1571 1598 1.880894 GGCCCAAGCGGTTTAGAAC 59.119 57.895 0.00 0.00 41.24 3.01
1737 1764 0.108472 CGATGAGGCTGTGCAGAGAA 60.108 55.000 16.28 0.00 0.00 2.87
1759 1786 3.976701 ATTCCAGAGCGGGGCAACG 62.977 63.158 0.00 0.00 34.36 4.10
1877 1904 3.405831 TCAAACTGGAGCTGACTGAATG 58.594 45.455 0.00 0.00 0.00 2.67
2154 2181 7.387265 TGGGAGACAAAATCAGGCTATATAA 57.613 36.000 0.00 0.00 0.00 0.98
2225 2252 5.368145 TGACAGCTAAAATCTTGACAGTGT 58.632 37.500 0.00 0.00 0.00 3.55
2275 2302 7.336176 TGGAAAGAATCTCATCATGTCAAGAAG 59.664 37.037 0.00 0.00 0.00 2.85
2305 2332 0.179059 TTCACGTGCAGCTTCTCCAA 60.179 50.000 11.67 0.00 0.00 3.53
2318 2345 0.180406 AGAAACAGCCACCTTCACGT 59.820 50.000 0.00 0.00 0.00 4.49
2319 2346 1.264288 GAAGAAACAGCCACCTTCACG 59.736 52.381 0.00 0.00 36.11 4.35
2345 2372 6.645415 GCTAAGCTAAACGATGCTAGGAATTA 59.355 38.462 0.00 0.00 38.75 1.40
2356 2383 9.765795 AGTATATCAAAAGCTAAGCTAAACGAT 57.234 29.630 0.00 0.00 38.25 3.73
2362 2389 8.696374 ACAGTGAGTATATCAAAAGCTAAGCTA 58.304 33.333 0.00 0.00 40.43 3.32
2374 2401 6.096423 ACCGCTTTAGAACAGTGAGTATATCA 59.904 38.462 0.00 0.00 34.79 2.15
2460 2493 4.030913 TCTGAGAAGATCCCGGTGTTTAT 58.969 43.478 0.00 0.00 0.00 1.40
2798 2831 8.900983 AGATAAGCAAAGATAATTCCTGACTC 57.099 34.615 0.00 0.00 0.00 3.36
2818 2851 7.933577 AGTCTTCACAGAACACAAATGAGATAA 59.066 33.333 0.00 0.00 0.00 1.75
2838 2871 6.869388 CAGACAAGGGTACTAAGAAAGTCTTC 59.131 42.308 0.00 0.00 39.80 2.87
2839 2872 6.326843 ACAGACAAGGGTACTAAGAAAGTCTT 59.673 38.462 0.00 0.00 39.80 3.01
2846 2879 7.338703 CACATACTACAGACAAGGGTACTAAGA 59.661 40.741 0.00 0.00 0.00 2.10
2897 2930 3.214328 ACCAGCAAGTGTAGGACAAAAG 58.786 45.455 0.00 0.00 0.00 2.27
2905 2938 4.441792 TGTGCATATACCAGCAAGTGTAG 58.558 43.478 0.00 0.00 43.20 2.74
2914 2947 5.604565 TCAGTGAGATTGTGCATATACCAG 58.395 41.667 0.00 0.00 0.00 4.00
2952 2985 8.169268 GTCTTATACTGTAGCAACATTGTTGAC 58.831 37.037 29.04 20.02 34.37 3.18
3060 3093 9.196139 CAGAATAAATACCCACCCTTCAATTAA 57.804 33.333 0.00 0.00 0.00 1.40
3394 3432 9.831737 GAAAACCATCTGATATATTCCAATTCG 57.168 33.333 0.00 0.00 0.00 3.34
3448 3486 4.058124 GTGTGTGATGTCTCTAACTGCAA 58.942 43.478 0.00 0.00 0.00 4.08
3591 3631 4.519540 AGGCGACATAAAGCAAAACAAT 57.480 36.364 0.00 0.00 34.54 2.71
3592 3632 4.314740 AAGGCGACATAAAGCAAAACAA 57.685 36.364 0.00 0.00 34.54 2.83
3594 3634 4.295051 TCAAAGGCGACATAAAGCAAAAC 58.705 39.130 0.00 0.00 34.54 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.