Multiple sequence alignment - TraesCS5A01G036000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G036000 chr5A 100.000 6747 0 0 1 6747 33010262 33003516 0.000000e+00 12460.0
1 TraesCS5A01G036000 chr5D 95.553 3778 97 28 2443 6177 43212508 43208759 0.000000e+00 5980.0
2 TraesCS5A01G036000 chr5D 91.923 1882 83 28 572 2414 43214357 43212506 0.000000e+00 2569.0
3 TraesCS5A01G036000 chr5D 90.110 455 33 5 6295 6742 43208780 43208331 1.260000e-161 580.0
4 TraesCS5A01G036000 chr5D 85.380 513 26 19 25 502 43215525 43215027 2.830000e-133 486.0
5 TraesCS5A01G036000 chr5D 91.275 149 8 4 6155 6298 338394440 338394588 1.480000e-46 198.0
6 TraesCS5A01G036000 chr5D 95.000 80 4 0 2406 2485 312136073 312136152 7.100000e-25 126.0
7 TraesCS5A01G036000 chr5B 94.470 3725 134 36 2455 6153 40788054 40784376 0.000000e+00 5672.0
8 TraesCS5A01G036000 chr5B 93.205 883 37 7 1188 2048 40789671 40788790 0.000000e+00 1277.0
9 TraesCS5A01G036000 chr5B 92.941 510 25 7 1 502 40791612 40791106 0.000000e+00 732.0
10 TraesCS5A01G036000 chr5B 90.299 536 23 10 671 1191 40790311 40789790 0.000000e+00 675.0
11 TraesCS5A01G036000 chr5B 94.180 378 19 2 2039 2413 40788430 40788053 2.110000e-159 573.0
12 TraesCS5A01G036000 chr5B 90.000 430 26 8 6322 6747 40784104 40783688 2.140000e-149 540.0
13 TraesCS5A01G036000 chr5B 95.122 82 4 0 2404 2485 706306877 706306958 5.490000e-26 130.0
14 TraesCS5A01G036000 chr5B 95.000 80 4 0 2406 2485 706306964 706306885 7.100000e-25 126.0
15 TraesCS5A01G036000 chr3B 91.192 193 15 2 6556 6747 284008004 284008195 1.870000e-65 261.0
16 TraesCS5A01G036000 chr3D 91.489 188 15 1 6560 6747 231727035 231727221 2.410000e-64 257.0
17 TraesCS5A01G036000 chr3A 99.167 120 1 0 6179 6298 550110873 550110992 4.100000e-52 217.0
18 TraesCS5A01G036000 chr3A 94.697 132 5 2 6164 6295 526764666 526764795 3.190000e-48 204.0
19 TraesCS5A01G036000 chr3A 95.000 80 4 0 2406 2485 593969917 593969996 7.100000e-25 126.0
20 TraesCS5A01G036000 chr6B 97.581 124 3 0 6175 6298 412162712 412162589 5.300000e-51 213.0
21 TraesCS5A01G036000 chr6B 97.581 124 3 0 6175 6298 641890523 641890646 5.300000e-51 213.0
22 TraesCS5A01G036000 chr1A 97.581 124 3 0 6175 6298 538399283 538399406 5.300000e-51 213.0
23 TraesCS5A01G036000 chr1A 92.908 141 8 2 6177 6316 401225209 401225348 3.190000e-48 204.0
24 TraesCS5A01G036000 chr1A 94.286 35 2 0 1547 1581 9565324 9565358 3.000000e-03 54.7
25 TraesCS5A01G036000 chr6A 96.825 126 4 0 6173 6298 101869939 101870064 1.910000e-50 211.0
26 TraesCS5A01G036000 chr4B 95.489 133 5 1 6167 6298 304888092 304887960 1.910000e-50 211.0
27 TraesCS5A01G036000 chr1B 95.294 85 4 0 2401 2485 493871875 493871959 1.180000e-27 135.0
28 TraesCS5A01G036000 chr1B 95.000 80 4 0 2406 2485 493871965 493871886 7.100000e-25 126.0
29 TraesCS5A01G036000 chr7D 95.000 80 4 0 2406 2485 419793113 419793192 7.100000e-25 126.0
30 TraesCS5A01G036000 chr7D 95.385 65 3 0 811 875 163607051 163606987 3.330000e-18 104.0
31 TraesCS5A01G036000 chr6D 91.860 86 7 0 2400 2485 292073463 292073378 3.300000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G036000 chr5A 33003516 33010262 6746 True 12460.000000 12460 100.000000 1 6747 1 chr5A.!!$R1 6746
1 TraesCS5A01G036000 chr5D 43208331 43215525 7194 True 2403.750000 5980 90.741500 25 6742 4 chr5D.!!$R1 6717
2 TraesCS5A01G036000 chr5B 40783688 40791612 7924 True 1578.166667 5672 92.515833 1 6747 6 chr5B.!!$R2 6746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 1100 0.038166 TGATGTGCCCAAGGGAAGTC 59.962 55.0 9.92 0.25 37.5 3.01 F
2415 3627 0.173708 GCAGAACACTACTCCCTCCG 59.826 60.0 0.00 0.00 0.0 4.63 F
2420 3632 0.629596 ACACTACTCCCTCCGATCCA 59.370 55.0 0.00 0.00 0.0 3.41 F
4341 5578 0.471022 TCTGCTACACACCAGGACCA 60.471 55.0 0.00 0.00 0.0 4.02 F
4692 5950 0.598065 ACCAGCGGAAGTGAAATTGC 59.402 50.0 1.50 0.00 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2417 3629 0.746063 ACCACGACACGTAGTTTGGA 59.254 50.0 18.16 0.00 41.61 3.53 R
3997 5234 0.030501 ATCCCCGAGGGTGATAACCA 60.031 55.0 7.48 0.00 44.74 3.67 R
4354 5591 0.327924 TCTGCATACTTGGGTGGTGG 59.672 55.0 0.00 0.00 0.00 4.61 R
5539 6801 0.035630 GCTCCACAGCCATCTTGACT 60.036 55.0 0.00 0.00 40.14 3.41 R
6224 7494 0.109913 AAAGTGGTCGGACCCTTTCC 59.890 55.0 25.31 11.54 35.36 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.653287 ACATGCTAAATGTATATAGCGTATGTT 57.347 29.630 0.00 0.00 45.90 2.71
170 174 6.969993 TTGAAAATTGGGTACTGTAAAGCT 57.030 33.333 0.00 0.00 0.00 3.74
182 186 9.654663 GGGTACTGTAAAGCTATATATTCCTTG 57.345 37.037 0.00 0.00 0.00 3.61
229 257 8.482852 AACTAATTTGCCATAGCCATAAATCT 57.517 30.769 0.00 0.00 38.69 2.40
231 259 9.014297 ACTAATTTGCCATAGCCATAAATCTAC 57.986 33.333 0.00 0.00 38.69 2.59
248 280 2.158593 TCTACAGCTAGCTAGGTCCAGG 60.159 54.545 22.33 13.61 30.45 4.45
263 295 0.893270 CCAGGCGATGTTTCCACCAA 60.893 55.000 0.00 0.00 0.00 3.67
290 322 3.436700 TCTCGATATTTCGCTTGCTCA 57.563 42.857 0.18 0.00 45.10 4.26
291 323 3.982475 TCTCGATATTTCGCTTGCTCAT 58.018 40.909 0.18 0.00 45.10 2.90
292 324 3.983988 TCTCGATATTTCGCTTGCTCATC 59.016 43.478 0.18 0.00 45.10 2.92
333 367 8.697507 TTATGTCTCTCATCACTAGCTAATGA 57.302 34.615 7.44 7.44 37.91 2.57
350 384 6.202954 AGCTAATGAACACATAAATCGGCTAC 59.797 38.462 0.00 0.00 0.00 3.58
449 488 5.193527 TGAGATGTCCATTATTCTTCCCCAA 59.806 40.000 0.00 0.00 0.00 4.12
472 511 3.682718 GCTAAATGCCAAGCTCTACAGGA 60.683 47.826 0.00 0.00 35.80 3.86
483 522 5.004361 AGCTCTACAGGATATCCTTGCTA 57.996 43.478 22.29 10.36 46.09 3.49
488 527 7.618019 TCTACAGGATATCCTTGCTACAATT 57.382 36.000 22.29 3.21 46.09 2.32
495 534 6.491403 GGATATCCTTGCTACAATTGTGGATT 59.509 38.462 24.48 15.72 34.97 3.01
508 1055 6.493116 CAATTGTGGATTGCTTCTATCACTC 58.507 40.000 0.00 0.00 38.79 3.51
526 1073 1.003839 CCAGTAACCTTCCGCTGCA 60.004 57.895 0.00 0.00 0.00 4.41
532 1079 1.620822 AACCTTCCGCTGCAGATTTT 58.379 45.000 20.43 0.00 0.00 1.82
534 1081 1.271597 ACCTTCCGCTGCAGATTTTCT 60.272 47.619 20.43 0.00 0.00 2.52
535 1082 1.131883 CCTTCCGCTGCAGATTTTCTG 59.868 52.381 20.43 0.08 46.90 3.02
547 1094 3.094572 AGATTTTCTGATGTGCCCAAGG 58.905 45.455 0.00 0.00 0.00 3.61
548 1095 1.631405 TTTTCTGATGTGCCCAAGGG 58.369 50.000 0.00 0.00 38.57 3.95
550 1097 0.776810 TTCTGATGTGCCCAAGGGAA 59.223 50.000 9.92 0.00 37.50 3.97
551 1098 0.329261 TCTGATGTGCCCAAGGGAAG 59.671 55.000 9.92 0.00 37.50 3.46
552 1099 0.038744 CTGATGTGCCCAAGGGAAGT 59.961 55.000 9.92 0.00 37.50 3.01
553 1100 0.038166 TGATGTGCCCAAGGGAAGTC 59.962 55.000 9.92 0.25 37.50 3.01
563 1208 2.082231 CAAGGGAAGTCAGATGCACAG 58.918 52.381 0.00 0.00 0.00 3.66
564 1209 1.356124 AGGGAAGTCAGATGCACAGT 58.644 50.000 0.00 0.00 0.00 3.55
565 1210 2.540383 AGGGAAGTCAGATGCACAGTA 58.460 47.619 0.00 0.00 0.00 2.74
567 1212 3.521126 AGGGAAGTCAGATGCACAGTAAT 59.479 43.478 0.00 0.00 0.00 1.89
570 1215 5.880332 GGGAAGTCAGATGCACAGTAATTAA 59.120 40.000 0.00 0.00 0.00 1.40
575 1220 6.708054 AGTCAGATGCACAGTAATTAATAGCC 59.292 38.462 0.00 0.00 0.00 3.93
581 1226 5.943416 TGCACAGTAATTAATAGCCACAGTT 59.057 36.000 6.96 0.00 0.00 3.16
607 1253 2.993899 CACTTTACGAAATCTCAGCCGT 59.006 45.455 0.00 0.00 38.82 5.68
609 1255 4.624024 CACTTTACGAAATCTCAGCCGTTA 59.376 41.667 0.00 0.00 36.58 3.18
610 1256 4.863131 ACTTTACGAAATCTCAGCCGTTAG 59.137 41.667 0.00 0.00 36.58 2.34
611 1257 4.707030 TTACGAAATCTCAGCCGTTAGA 57.293 40.909 0.00 0.00 36.58 2.10
613 1259 2.492484 ACGAAATCTCAGCCGTTAGAGT 59.508 45.455 0.00 0.00 33.63 3.24
614 1260 3.109619 CGAAATCTCAGCCGTTAGAGTC 58.890 50.000 0.00 0.00 33.63 3.36
615 1261 3.427638 CGAAATCTCAGCCGTTAGAGTCA 60.428 47.826 0.00 0.00 33.63 3.41
641 1292 3.549827 CGCTTCAGACTCGATGCTTCTAT 60.550 47.826 0.00 0.00 34.73 1.98
642 1293 3.735240 GCTTCAGACTCGATGCTTCTATG 59.265 47.826 0.00 0.00 34.23 2.23
643 1294 3.361794 TCAGACTCGATGCTTCTATGC 57.638 47.619 0.00 0.00 0.00 3.14
644 1295 2.954989 TCAGACTCGATGCTTCTATGCT 59.045 45.455 0.00 0.00 0.00 3.79
645 1296 4.137543 TCAGACTCGATGCTTCTATGCTA 58.862 43.478 0.00 0.00 0.00 3.49
646 1297 4.023622 TCAGACTCGATGCTTCTATGCTAC 60.024 45.833 0.00 0.00 0.00 3.58
647 1298 3.885901 AGACTCGATGCTTCTATGCTACA 59.114 43.478 0.00 0.00 0.00 2.74
651 1302 6.929625 ACTCGATGCTTCTATGCTACAATAT 58.070 36.000 0.00 0.00 0.00 1.28
652 1303 7.032580 ACTCGATGCTTCTATGCTACAATATC 58.967 38.462 0.00 0.00 0.00 1.63
653 1304 7.093988 ACTCGATGCTTCTATGCTACAATATCT 60.094 37.037 0.00 0.00 0.00 1.98
654 1305 7.254137 TCGATGCTTCTATGCTACAATATCTC 58.746 38.462 0.00 0.00 0.00 2.75
655 1306 7.121907 TCGATGCTTCTATGCTACAATATCTCT 59.878 37.037 0.00 0.00 0.00 3.10
656 1307 7.220491 CGATGCTTCTATGCTACAATATCTCTG 59.780 40.741 0.00 0.00 0.00 3.35
657 1308 7.530426 TGCTTCTATGCTACAATATCTCTGA 57.470 36.000 0.00 0.00 0.00 3.27
659 1310 7.869937 TGCTTCTATGCTACAATATCTCTGAAC 59.130 37.037 0.00 0.00 0.00 3.18
661 1312 9.755804 CTTCTATGCTACAATATCTCTGAACAA 57.244 33.333 0.00 0.00 0.00 2.83
667 1318 8.144478 TGCTACAATATCTCTGAACAATACCTC 58.856 37.037 0.00 0.00 0.00 3.85
757 1426 4.216708 AGCGCTAAGTAAGTTAGAGGGAT 58.783 43.478 8.99 0.17 40.79 3.85
761 1431 6.238981 GCGCTAAGTAAGTTAGAGGGATACTT 60.239 42.308 0.00 0.00 40.79 2.24
770 1440 5.836358 AGTTAGAGGGATACTTAGCTTCAGG 59.164 44.000 0.00 0.00 0.00 3.86
805 1475 1.068474 CGCGAGTAACCTTCACCTTG 58.932 55.000 0.00 0.00 0.00 3.61
831 1501 7.254421 GGTTCCTTTTTAGTTTGCTCATTTGTG 60.254 37.037 0.00 0.00 0.00 3.33
849 1519 1.208776 GTGCTACAGGTTAATCCCGGT 59.791 52.381 0.00 0.00 36.79 5.28
881 1551 2.080693 TGATACAATGTCGGTGGCAAC 58.919 47.619 0.00 0.00 0.00 4.17
924 1594 2.803956 GGCACTAACGACTGCAACTTTA 59.196 45.455 0.00 0.00 34.90 1.85
1035 1713 3.071580 GCTTAGAGCGCCATGTCTT 57.928 52.632 2.29 0.00 0.00 3.01
1036 1714 0.933796 GCTTAGAGCGCCATGTCTTC 59.066 55.000 2.29 0.00 0.00 2.87
1037 1715 1.472376 GCTTAGAGCGCCATGTCTTCT 60.472 52.381 2.29 0.06 0.00 2.85
1062 1740 4.503714 ACTCCTTGTGTTTCTTCTCCAA 57.496 40.909 0.00 0.00 0.00 3.53
1097 1775 4.742201 GCTGTCGCAAGGGCTCGA 62.742 66.667 0.00 0.00 38.10 4.04
1098 1776 2.507992 CTGTCGCAAGGGCTCGAG 60.508 66.667 8.45 8.45 38.10 4.04
1099 1777 4.742201 TGTCGCAAGGGCTCGAGC 62.742 66.667 29.38 29.38 38.10 5.03
1100 1778 4.742201 GTCGCAAGGGCTCGAGCA 62.742 66.667 36.27 13.53 44.36 4.26
1101 1779 4.441695 TCGCAAGGGCTCGAGCAG 62.442 66.667 36.27 23.28 44.36 4.24
1102 1780 4.441695 CGCAAGGGCTCGAGCAGA 62.442 66.667 36.27 0.00 44.36 4.26
1165 1843 1.208052 CCAGCTTCAACCTAGCTAGCA 59.792 52.381 18.83 1.89 46.80 3.49
1198 2000 5.809562 CGTCATGATCCCTCTTAATCTATGC 59.190 44.000 0.00 0.00 0.00 3.14
1211 2013 4.978083 AATCTATGCCTTGTCAAAGCTG 57.022 40.909 7.65 0.00 31.51 4.24
1342 2144 2.110011 AGCCAAGTTGGTAAGGTCCATT 59.890 45.455 22.85 0.00 40.46 3.16
1431 2236 1.001641 CCTTGGGGAGAGGCAACAG 60.002 63.158 0.00 0.00 34.22 3.16
1449 2254 2.894126 ACAGGAAGATGTCAGTCTCGTT 59.106 45.455 0.00 0.00 0.00 3.85
1524 2334 5.730633 AGTACTACCTAGCTACTCCCTTT 57.269 43.478 0.00 0.00 0.00 3.11
1538 2348 7.514127 AGCTACTCCCTTTGATCCATAATAAGA 59.486 37.037 0.00 0.00 0.00 2.10
1539 2349 8.157476 GCTACTCCCTTTGATCCATAATAAGAA 58.843 37.037 0.00 0.00 0.00 2.52
1681 2506 1.337821 GTGTCTCTTTGTCGTAGCCG 58.662 55.000 0.00 0.00 0.00 5.52
1758 2583 5.656416 TGGTCTTGTTGAGATTTTCACCTTT 59.344 36.000 0.00 0.00 36.61 3.11
1855 2693 3.416156 AGGAGCTTCCAGTCATTTTGAC 58.584 45.455 0.00 0.00 39.95 3.18
2261 3469 2.749621 GAGGTGGTGTTTGGCTTATCTG 59.250 50.000 0.00 0.00 0.00 2.90
2268 3476 6.806739 GTGGTGTTTGGCTTATCTGTAATTTC 59.193 38.462 0.00 0.00 0.00 2.17
2329 3540 7.663043 TTTCTCCTCTATTCTTCCTCCTTAC 57.337 40.000 0.00 0.00 0.00 2.34
2355 3566 5.049129 GTCCACTCCTCATCTGTTCAAAAAG 60.049 44.000 0.00 0.00 0.00 2.27
2411 3623 3.623510 GCTATTTGCAGAACACTACTCCC 59.376 47.826 0.00 0.00 42.31 4.30
2412 3624 4.624125 GCTATTTGCAGAACACTACTCCCT 60.624 45.833 0.00 0.00 42.31 4.20
2413 3625 3.402628 TTTGCAGAACACTACTCCCTC 57.597 47.619 0.00 0.00 0.00 4.30
2414 3626 1.267121 TGCAGAACACTACTCCCTCC 58.733 55.000 0.00 0.00 0.00 4.30
2415 3627 0.173708 GCAGAACACTACTCCCTCCG 59.826 60.000 0.00 0.00 0.00 4.63
2416 3628 1.835494 CAGAACACTACTCCCTCCGA 58.165 55.000 0.00 0.00 0.00 4.55
2417 3629 2.379972 CAGAACACTACTCCCTCCGAT 58.620 52.381 0.00 0.00 0.00 4.18
2418 3630 2.359531 CAGAACACTACTCCCTCCGATC 59.640 54.545 0.00 0.00 0.00 3.69
2419 3631 1.682323 GAACACTACTCCCTCCGATCC 59.318 57.143 0.00 0.00 0.00 3.36
2420 3632 0.629596 ACACTACTCCCTCCGATCCA 59.370 55.000 0.00 0.00 0.00 3.41
2421 3633 1.006758 ACACTACTCCCTCCGATCCAA 59.993 52.381 0.00 0.00 0.00 3.53
2422 3634 2.108168 CACTACTCCCTCCGATCCAAA 58.892 52.381 0.00 0.00 0.00 3.28
2423 3635 2.108970 ACTACTCCCTCCGATCCAAAC 58.891 52.381 0.00 0.00 0.00 2.93
2424 3636 2.292323 ACTACTCCCTCCGATCCAAACT 60.292 50.000 0.00 0.00 0.00 2.66
2425 3637 2.544844 ACTCCCTCCGATCCAAACTA 57.455 50.000 0.00 0.00 0.00 2.24
2426 3638 2.108970 ACTCCCTCCGATCCAAACTAC 58.891 52.381 0.00 0.00 0.00 2.73
2427 3639 1.067212 CTCCCTCCGATCCAAACTACG 59.933 57.143 0.00 0.00 0.00 3.51
2428 3640 0.822164 CCCTCCGATCCAAACTACGT 59.178 55.000 0.00 0.00 0.00 3.57
2429 3641 1.470979 CCCTCCGATCCAAACTACGTG 60.471 57.143 0.00 0.00 0.00 4.49
2430 3642 1.203994 CCTCCGATCCAAACTACGTGT 59.796 52.381 0.00 0.00 0.00 4.49
2431 3643 2.527100 CTCCGATCCAAACTACGTGTC 58.473 52.381 0.00 0.00 0.00 3.67
2432 3644 1.135603 TCCGATCCAAACTACGTGTCG 60.136 52.381 0.00 0.00 0.00 4.35
2433 3645 1.401931 CCGATCCAAACTACGTGTCGT 60.402 52.381 0.00 0.00 44.35 4.34
2434 3646 1.647213 CGATCCAAACTACGTGTCGTG 59.353 52.381 0.00 0.00 41.39 4.35
2435 3647 1.990563 GATCCAAACTACGTGTCGTGG 59.009 52.381 0.00 6.42 43.66 4.94
2480 3692 6.399639 AAACCACGACACTTATTTTGGATT 57.600 33.333 0.00 0.00 0.00 3.01
2541 3753 9.482627 GATACAGGATTGTAGAAACATAGGAAG 57.517 37.037 0.00 0.00 42.72 3.46
2736 3948 7.398618 CCTCATGGTATGACATATAACTCCTCT 59.601 40.741 0.00 0.00 35.06 3.69
2775 3987 8.422577 AACATTCCTATTCTACAAAGGCTTTT 57.577 30.769 10.36 4.94 0.00 2.27
2806 4018 9.981114 TCCTCCAAATTAAATTTCTTCAGTTTC 57.019 29.630 0.00 0.00 0.00 2.78
2973 4189 2.610433 GGCTTTTCTGCAATGCTTACC 58.390 47.619 6.82 0.00 36.11 2.85
3098 4335 4.619973 GACAAATGCTTGTTGACCATCAA 58.380 39.130 0.00 0.00 45.98 2.57
3100 4337 5.232463 ACAAATGCTTGTTGACCATCAATC 58.768 37.500 0.00 0.00 43.45 2.67
3101 4338 5.221481 ACAAATGCTTGTTGACCATCAATCA 60.221 36.000 0.00 0.00 43.45 2.57
3102 4339 5.670792 AATGCTTGTTGACCATCAATCAT 57.329 34.783 0.00 5.02 38.79 2.45
3103 4340 5.670792 ATGCTTGTTGACCATCAATCATT 57.329 34.783 0.00 0.00 38.79 2.57
3104 4341 4.811908 TGCTTGTTGACCATCAATCATTG 58.188 39.130 0.00 0.00 38.79 2.82
3106 4343 5.221481 TGCTTGTTGACCATCAATCATTGTT 60.221 36.000 0.00 0.00 38.79 2.83
3109 4346 7.546667 GCTTGTTGACCATCAATCATTGTTATT 59.453 33.333 0.00 0.00 38.79 1.40
3110 4347 8.984891 TTGTTGACCATCAATCATTGTTATTC 57.015 30.769 0.00 0.00 38.79 1.75
3111 4348 8.120140 TGTTGACCATCAATCATTGTTATTCA 57.880 30.769 0.00 0.00 38.79 2.57
3112 4349 8.751242 TGTTGACCATCAATCATTGTTATTCAT 58.249 29.630 0.00 0.00 38.79 2.57
3467 4704 1.280421 GATGATGGCTATGGACCTCCC 59.720 57.143 0.00 0.00 34.29 4.30
3821 5058 1.250328 ACGGTGTTGACGTCCTATCA 58.750 50.000 14.12 4.13 41.25 2.15
3905 5142 2.191375 CCGGTCATCATGGCAGCT 59.809 61.111 0.00 0.00 0.00 4.24
3923 5160 2.158900 AGCTGGAAATGATGGACCTACG 60.159 50.000 0.00 0.00 0.00 3.51
3997 5234 3.070159 ACGGTTGATCGATCATTCCTCAT 59.930 43.478 29.96 20.12 36.56 2.90
4087 5324 5.730296 TTTACCTCTCTTCCTTCTCACAG 57.270 43.478 0.00 0.00 0.00 3.66
4130 5367 2.026641 GCACAATCCATGTATGTGGCT 58.973 47.619 18.60 0.00 43.54 4.75
4341 5578 0.471022 TCTGCTACACACCAGGACCA 60.471 55.000 0.00 0.00 0.00 4.02
4354 5591 2.096248 CAGGACCAGGTAGTGTCTCTC 58.904 57.143 0.00 0.00 0.00 3.20
4688 5946 1.673920 GAACAACCAGCGGAAGTGAAA 59.326 47.619 1.50 0.00 0.00 2.69
4692 5950 0.598065 ACCAGCGGAAGTGAAATTGC 59.402 50.000 1.50 0.00 0.00 3.56
4826 6087 6.653273 ATTGTTCGATTCAGTCACTACATG 57.347 37.500 0.00 0.00 0.00 3.21
5278 6540 2.435938 GCAAAGATCGCCGACCCA 60.436 61.111 0.00 0.00 0.00 4.51
5362 6624 3.055819 ACATCAGTGCGTCAGATTACCTT 60.056 43.478 0.00 0.00 0.00 3.50
5365 6627 3.006430 TCAGTGCGTCAGATTACCTTGAA 59.994 43.478 0.00 0.00 0.00 2.69
5381 6643 6.293004 ACCTTGAATTTTTCAACTGTCCAA 57.707 33.333 0.00 0.00 44.21 3.53
5391 6653 5.930837 TTCAACTGTCCAAAAGGATTTGT 57.069 34.783 1.17 0.00 43.59 2.83
5591 6853 1.202915 TGTTCAGCAATGCAAGGAGGA 60.203 47.619 8.35 0.00 0.00 3.71
5608 6870 3.416156 GAGGATGCAGAGTTTCAAGGTT 58.584 45.455 0.00 0.00 0.00 3.50
5610 6872 5.184892 AGGATGCAGAGTTTCAAGGTTAT 57.815 39.130 0.00 0.00 0.00 1.89
5757 7019 0.391263 GCCTCTTAAGTGGGGACGTG 60.391 60.000 21.93 0.00 0.00 4.49
5808 7070 2.099921 ACGACTGGATCTGTATCTGTGC 59.900 50.000 0.00 0.00 32.29 4.57
5814 7076 5.645497 ACTGGATCTGTATCTGTGCTTTTTC 59.355 40.000 0.00 0.00 32.29 2.29
5817 7079 3.334691 TCTGTATCTGTGCTTTTTCCCG 58.665 45.455 0.00 0.00 0.00 5.14
5820 7084 4.331968 TGTATCTGTGCTTTTTCCCGAAT 58.668 39.130 0.00 0.00 0.00 3.34
5824 7088 2.295909 CTGTGCTTTTTCCCGAATTCCA 59.704 45.455 0.00 0.00 0.00 3.53
5854 7118 2.631062 TGTGGTGATTAGTGTCCGTTCT 59.369 45.455 0.00 0.00 0.00 3.01
5861 7125 5.873164 GTGATTAGTGTCCGTTCTTATGGTT 59.127 40.000 0.00 0.00 0.00 3.67
5862 7126 5.872617 TGATTAGTGTCCGTTCTTATGGTTG 59.127 40.000 0.00 0.00 0.00 3.77
5863 7127 3.053831 AGTGTCCGTTCTTATGGTTGG 57.946 47.619 0.00 0.00 0.00 3.77
5864 7128 2.370849 AGTGTCCGTTCTTATGGTTGGT 59.629 45.455 0.00 0.00 0.00 3.67
5867 7131 5.422970 AGTGTCCGTTCTTATGGTTGGTATA 59.577 40.000 0.00 0.00 0.00 1.47
5945 7211 0.609131 AGGAAATCCACCCGCAACTG 60.609 55.000 1.67 0.00 38.89 3.16
6041 7308 1.530441 GCATCGCATACAACAGCACTG 60.530 52.381 0.00 0.00 0.00 3.66
6062 7329 4.334552 TGTGATAGGGTTACGTCAGTACA 58.665 43.478 0.00 0.00 31.60 2.90
6079 7346 7.042321 CGTCAGTACATGTTAAAAGAAACTCCA 60.042 37.037 2.30 0.00 0.00 3.86
6097 7364 1.605712 CCACACAGGGAAGAGACGAAC 60.606 57.143 0.00 0.00 0.00 3.95
6171 7441 4.647424 TTGCGAGGAACAAAACATTTCT 57.353 36.364 0.00 0.00 0.00 2.52
6172 7442 4.223320 TGCGAGGAACAAAACATTTCTC 57.777 40.909 0.00 0.00 0.00 2.87
6173 7443 3.882888 TGCGAGGAACAAAACATTTCTCT 59.117 39.130 0.00 0.00 0.00 3.10
6174 7444 4.338118 TGCGAGGAACAAAACATTTCTCTT 59.662 37.500 0.00 0.00 0.00 2.85
6176 7446 6.038825 TGCGAGGAACAAAACATTTCTCTTTA 59.961 34.615 0.00 0.00 0.00 1.85
6178 7448 7.434013 GCGAGGAACAAAACATTTCTCTTTAAA 59.566 33.333 0.00 0.00 0.00 1.52
6179 7449 9.296400 CGAGGAACAAAACATTTCTCTTTAAAA 57.704 29.630 0.00 0.00 0.00 1.52
6201 7471 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
6202 7472 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
6203 7473 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
6205 7475 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
6206 7476 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
6207 7477 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
6208 7478 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
6211 7481 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
6212 7482 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
6214 7484 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
6223 7493 4.705519 CCGCTTGCGCAGGGTTTG 62.706 66.667 21.88 4.52 35.30 2.93
6224 7494 4.705519 CGCTTGCGCAGGGTTTGG 62.706 66.667 21.88 3.39 35.30 3.28
6225 7495 4.362476 GCTTGCGCAGGGTTTGGG 62.362 66.667 21.88 2.04 42.32 4.12
6227 7497 2.123683 TTGCGCAGGGTTTGGGAA 60.124 55.556 11.31 0.00 42.02 3.97
6228 7498 1.743321 CTTGCGCAGGGTTTGGGAAA 61.743 55.000 12.39 0.00 42.02 3.13
6229 7499 1.743321 TTGCGCAGGGTTTGGGAAAG 61.743 55.000 11.31 0.00 42.02 2.62
6230 7500 2.931068 GCGCAGGGTTTGGGAAAGG 61.931 63.158 0.30 0.00 42.02 3.11
6231 7501 2.275380 CGCAGGGTTTGGGAAAGGG 61.275 63.158 0.00 0.00 42.02 3.95
6232 7502 1.152333 GCAGGGTTTGGGAAAGGGT 60.152 57.895 0.00 0.00 0.00 4.34
6241 7511 3.479979 GGAAAGGGTCCGACCACT 58.520 61.111 19.43 10.80 41.02 4.00
6242 7512 1.759236 GGAAAGGGTCCGACCACTT 59.241 57.895 19.43 15.68 41.02 3.16
6243 7513 0.109913 GGAAAGGGTCCGACCACTTT 59.890 55.000 23.42 23.42 41.02 2.66
6244 7514 1.235724 GAAAGGGTCCGACCACTTTG 58.764 55.000 26.16 0.00 41.02 2.77
6245 7515 0.179001 AAAGGGTCCGACCACTTTGG 60.179 55.000 22.93 0.00 41.02 3.28
6247 7517 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
6257 7527 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
6258 7528 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
6259 7529 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
6261 7531 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
6262 7532 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
6263 7533 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
6264 7534 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
6265 7535 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
6266 7536 3.007635 GGTCTATTGTACGCAGCCTTTT 58.992 45.455 0.00 0.00 0.00 2.27
6267 7537 3.063588 GGTCTATTGTACGCAGCCTTTTC 59.936 47.826 0.00 0.00 0.00 2.29
6269 7539 2.200373 ATTGTACGCAGCCTTTTCCT 57.800 45.000 0.00 0.00 0.00 3.36
6270 7540 2.843401 TTGTACGCAGCCTTTTCCTA 57.157 45.000 0.00 0.00 0.00 2.94
6273 7543 2.027561 TGTACGCAGCCTTTTCCTACAT 60.028 45.455 0.00 0.00 0.00 2.29
6274 7544 2.200373 ACGCAGCCTTTTCCTACATT 57.800 45.000 0.00 0.00 0.00 2.71
6275 7545 2.514803 ACGCAGCCTTTTCCTACATTT 58.485 42.857 0.00 0.00 0.00 2.32
6276 7546 2.488153 ACGCAGCCTTTTCCTACATTTC 59.512 45.455 0.00 0.00 0.00 2.17
6277 7547 2.749621 CGCAGCCTTTTCCTACATTTCT 59.250 45.455 0.00 0.00 0.00 2.52
6278 7548 3.426695 CGCAGCCTTTTCCTACATTTCTG 60.427 47.826 0.00 0.00 0.00 3.02
6279 7549 3.507622 GCAGCCTTTTCCTACATTTCTGT 59.492 43.478 0.00 0.00 39.49 3.41
6281 7551 5.183140 GCAGCCTTTTCCTACATTTCTGTAA 59.817 40.000 0.00 0.00 37.41 2.41
6283 7553 6.655003 CAGCCTTTTCCTACATTTCTGTAAGA 59.345 38.462 0.00 0.00 44.68 2.10
6296 7566 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
6297 7567 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
6298 7568 2.708861 TGTAAGAGGCTGTTTCCAGGAA 59.291 45.455 0.90 0.00 39.22 3.36
6299 7569 2.278332 AAGAGGCTGTTTCCAGGAAC 57.722 50.000 0.00 0.00 39.22 3.62
6300 7570 1.140312 AGAGGCTGTTTCCAGGAACA 58.860 50.000 0.00 2.96 39.22 3.18
6301 7571 1.494721 AGAGGCTGTTTCCAGGAACAA 59.505 47.619 0.00 0.00 38.90 2.83
6303 7573 2.693074 GAGGCTGTTTCCAGGAACAAAA 59.307 45.455 0.00 0.00 38.90 2.44
6304 7574 2.430694 AGGCTGTTTCCAGGAACAAAAC 59.569 45.455 0.00 0.00 38.90 2.43
6306 7576 3.181466 GGCTGTTTCCAGGAACAAAACAT 60.181 43.478 0.00 0.00 40.84 2.71
6307 7577 4.441792 GCTGTTTCCAGGAACAAAACATT 58.558 39.130 0.00 0.00 40.84 2.71
6308 7578 4.875536 GCTGTTTCCAGGAACAAAACATTT 59.124 37.500 0.00 0.00 40.84 2.32
6309 7579 5.006649 GCTGTTTCCAGGAACAAAACATTTC 59.993 40.000 0.00 0.00 40.84 2.17
6328 7701 4.693042 TTCTCTTTACCGACCCAAAAGA 57.307 40.909 0.00 0.00 37.00 2.52
6365 7738 5.464965 TTCTCGTTTCTTGTTTGACTCAC 57.535 39.130 0.00 0.00 0.00 3.51
6436 7809 4.393062 ACAGATAATTTGAGGCGTCAACAG 59.607 41.667 20.76 8.99 42.60 3.16
6497 7873 4.048241 GACTGGAAGGCACATACTACTC 57.952 50.000 0.00 0.00 46.27 2.59
6498 7874 2.766828 ACTGGAAGGCACATACTACTCC 59.233 50.000 0.00 0.00 39.30 3.85
6501 7877 3.844211 TGGAAGGCACATACTACTCCTTT 59.156 43.478 0.00 0.00 37.28 3.11
6503 7879 5.222048 TGGAAGGCACATACTACTCCTTTTT 60.222 40.000 0.00 0.00 37.28 1.94
6504 7880 5.354513 GGAAGGCACATACTACTCCTTTTTC 59.645 44.000 0.00 0.00 37.28 2.29
6506 7882 5.735766 AGGCACATACTACTCCTTTTTCTC 58.264 41.667 0.00 0.00 0.00 2.87
6507 7883 5.485708 AGGCACATACTACTCCTTTTTCTCT 59.514 40.000 0.00 0.00 0.00 3.10
6508 7884 6.013293 AGGCACATACTACTCCTTTTTCTCTT 60.013 38.462 0.00 0.00 0.00 2.85
6509 7885 6.092807 GGCACATACTACTCCTTTTTCTCTTG 59.907 42.308 0.00 0.00 0.00 3.02
6510 7886 6.874134 GCACATACTACTCCTTTTTCTCTTGA 59.126 38.462 0.00 0.00 0.00 3.02
6511 7887 7.387948 GCACATACTACTCCTTTTTCTCTTGAA 59.612 37.037 0.00 0.00 0.00 2.69
6512 7888 8.713271 CACATACTACTCCTTTTTCTCTTGAAC 58.287 37.037 0.00 0.00 31.02 3.18
6556 7932 2.368221 CCAAAAACCCAGATTCAAGGCA 59.632 45.455 0.00 0.00 0.00 4.75
6557 7933 3.008266 CCAAAAACCCAGATTCAAGGCAT 59.992 43.478 0.00 0.00 0.00 4.40
6587 7963 5.526506 AGCCAAAATAGAAATCTGATGCC 57.473 39.130 0.00 0.00 0.00 4.40
6622 7998 3.066621 TGCACTGTTTTGACAGCCTAAAG 59.933 43.478 6.47 0.00 41.19 1.85
6653 8029 7.173218 TGACTGTAGTCTTTTTATTGCAGGAAG 59.827 37.037 12.75 0.00 44.99 3.46
6703 8083 4.104086 TCCTTTGTGGATGGAGTATCTGT 58.896 43.478 0.00 0.00 40.56 3.41
6739 8119 6.642733 TTCAAGGGAAGAGAGGTCATTTAT 57.357 37.500 0.00 0.00 0.00 1.40
6742 8122 3.137360 AGGGAAGAGAGGTCATTTATGCC 59.863 47.826 0.00 0.00 0.00 4.40
6743 8123 3.137360 GGGAAGAGAGGTCATTTATGCCT 59.863 47.826 5.70 5.70 37.14 4.75
6744 8124 4.348168 GGGAAGAGAGGTCATTTATGCCTA 59.652 45.833 5.92 0.00 35.46 3.93
6745 8125 5.013599 GGGAAGAGAGGTCATTTATGCCTAT 59.986 44.000 5.92 3.81 35.46 2.57
6746 8126 5.936956 GGAAGAGAGGTCATTTATGCCTATG 59.063 44.000 5.48 0.00 35.46 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.953697 TTGTCTTTTAACAAATTAACATACGCT 57.046 25.926 0.00 0.00 36.25 5.07
32 33 8.445275 TTGTGCTCTCTATTTGTCTTTTAACA 57.555 30.769 0.00 0.00 0.00 2.41
33 34 7.535599 GCTTGTGCTCTCTATTTGTCTTTTAAC 59.464 37.037 0.00 0.00 36.03 2.01
36 37 5.532406 TGCTTGTGCTCTCTATTTGTCTTTT 59.468 36.000 0.00 0.00 40.48 2.27
74 78 4.150804 CACATCAGAGATGCTCAATCATCG 59.849 45.833 6.90 0.00 45.57 3.84
111 115 6.040955 TGTTGAGTGATCACTAGTTCTTGTCT 59.959 38.462 27.95 1.68 42.66 3.41
170 174 8.474831 CACATCGGTATCACCAAGGAATATATA 58.525 37.037 0.00 0.00 38.47 0.86
182 186 1.137086 AGCTGTCACATCGGTATCACC 59.863 52.381 0.00 0.00 34.05 4.02
184 188 2.099405 TCAGCTGTCACATCGGTATCA 58.901 47.619 14.67 0.00 0.00 2.15
229 257 1.754555 GCCTGGACCTAGCTAGCTGTA 60.755 57.143 27.68 7.31 0.00 2.74
231 259 1.745264 GCCTGGACCTAGCTAGCTG 59.255 63.158 27.68 13.96 0.00 4.24
290 322 7.060421 AGACATAAATAATTCACCAACGGGAT 58.940 34.615 0.00 0.00 38.05 3.85
291 323 6.419791 AGACATAAATAATTCACCAACGGGA 58.580 36.000 0.00 0.00 38.05 5.14
292 324 6.542370 AGAGACATAAATAATTCACCAACGGG 59.458 38.462 0.00 0.00 41.29 5.28
333 367 4.335315 CACATGGTAGCCGATTTATGTGTT 59.665 41.667 10.87 0.00 40.06 3.32
472 511 6.239120 GCAATCCACAATTGTAGCAAGGATAT 60.239 38.462 21.41 12.50 45.55 1.63
483 522 5.948162 AGTGATAGAAGCAATCCACAATTGT 59.052 36.000 4.92 4.92 45.55 2.71
488 527 4.142609 GGAGTGATAGAAGCAATCCACA 57.857 45.455 6.76 0.00 46.63 4.17
495 534 4.353777 AGGTTACTGGAGTGATAGAAGCA 58.646 43.478 0.00 0.00 0.00 3.91
496 535 5.346181 AAGGTTACTGGAGTGATAGAAGC 57.654 43.478 0.00 0.00 0.00 3.86
497 536 5.450688 CGGAAGGTTACTGGAGTGATAGAAG 60.451 48.000 0.00 0.00 0.00 2.85
499 538 3.952323 CGGAAGGTTACTGGAGTGATAGA 59.048 47.826 0.00 0.00 0.00 1.98
500 539 3.491104 GCGGAAGGTTACTGGAGTGATAG 60.491 52.174 0.00 0.00 0.00 2.08
501 540 2.429610 GCGGAAGGTTACTGGAGTGATA 59.570 50.000 0.00 0.00 0.00 2.15
502 541 1.207329 GCGGAAGGTTACTGGAGTGAT 59.793 52.381 0.00 0.00 0.00 3.06
508 1055 1.003839 TGCAGCGGAAGGTTACTGG 60.004 57.895 0.00 0.00 41.81 4.00
526 1073 3.094572 CCTTGGGCACATCAGAAAATCT 58.905 45.455 0.00 0.00 0.00 2.40
532 1079 0.329261 CTTCCCTTGGGCACATCAGA 59.671 55.000 0.00 0.00 0.00 3.27
534 1081 0.038166 GACTTCCCTTGGGCACATCA 59.962 55.000 0.00 0.00 0.00 3.07
535 1082 0.038166 TGACTTCCCTTGGGCACATC 59.962 55.000 0.00 0.00 0.00 3.06
536 1083 0.038744 CTGACTTCCCTTGGGCACAT 59.961 55.000 0.00 0.00 0.00 3.21
538 1085 0.329596 ATCTGACTTCCCTTGGGCAC 59.670 55.000 0.00 0.00 0.00 5.01
539 1086 0.329261 CATCTGACTTCCCTTGGGCA 59.671 55.000 0.00 0.00 0.00 5.36
542 1089 1.271543 TGTGCATCTGACTTCCCTTGG 60.272 52.381 0.00 0.00 0.00 3.61
544 1091 1.701847 ACTGTGCATCTGACTTCCCTT 59.298 47.619 0.00 0.00 0.00 3.95
547 1094 6.985188 TTAATTACTGTGCATCTGACTTCC 57.015 37.500 0.00 0.00 0.00 3.46
548 1095 8.279103 GCTATTAATTACTGTGCATCTGACTTC 58.721 37.037 0.00 0.00 0.00 3.01
550 1097 6.708054 GGCTATTAATTACTGTGCATCTGACT 59.292 38.462 0.00 0.00 0.00 3.41
551 1098 6.483307 TGGCTATTAATTACTGTGCATCTGAC 59.517 38.462 0.00 0.00 0.00 3.51
552 1099 6.483307 GTGGCTATTAATTACTGTGCATCTGA 59.517 38.462 0.00 0.00 0.00 3.27
553 1100 6.260714 TGTGGCTATTAATTACTGTGCATCTG 59.739 38.462 0.00 0.00 0.00 2.90
581 1226 6.435428 GGCTGAGATTTCGTAAAGTGAAAAA 58.565 36.000 0.00 0.00 38.68 1.94
594 1240 4.111375 TGACTCTAACGGCTGAGATTTC 57.889 45.455 0.00 0.00 34.65 2.17
607 1253 5.447413 CGAGTCTGAAGCGTATTGACTCTAA 60.447 44.000 18.80 0.00 46.54 2.10
609 1255 3.181505 CGAGTCTGAAGCGTATTGACTCT 60.182 47.826 18.80 0.00 46.54 3.24
610 1256 3.102276 CGAGTCTGAAGCGTATTGACTC 58.898 50.000 14.44 14.44 45.78 3.36
611 1257 2.747989 TCGAGTCTGAAGCGTATTGACT 59.252 45.455 0.00 0.00 40.21 3.41
613 1259 3.695816 CATCGAGTCTGAAGCGTATTGA 58.304 45.455 0.00 0.00 0.00 2.57
614 1260 2.217393 GCATCGAGTCTGAAGCGTATTG 59.783 50.000 0.00 0.00 0.00 1.90
615 1261 2.099921 AGCATCGAGTCTGAAGCGTATT 59.900 45.455 0.00 0.00 37.63 1.89
641 1292 8.023021 AGGTATTGTTCAGAGATATTGTAGCA 57.977 34.615 0.00 0.00 0.00 3.49
642 1293 8.144478 TGAGGTATTGTTCAGAGATATTGTAGC 58.856 37.037 0.00 0.00 0.00 3.58
675 1339 7.504403 AGTTCAGCATATTAGCAAGACACTAT 58.496 34.615 0.00 0.00 36.85 2.12
689 1353 9.331282 GACAGGTTAAGATTTAGTTCAGCATAT 57.669 33.333 0.00 0.00 0.00 1.78
690 1354 8.540388 AGACAGGTTAAGATTTAGTTCAGCATA 58.460 33.333 0.00 0.00 0.00 3.14
721 1388 2.027625 GCGCTTGTAGCCGTTGACT 61.028 57.895 0.00 0.00 38.18 3.41
722 1389 0.734942 TAGCGCTTGTAGCCGTTGAC 60.735 55.000 18.68 0.00 38.18 3.18
757 1426 7.470702 GCTTGTCTGATATCCTGAAGCTAAGTA 60.471 40.741 14.16 0.00 0.00 2.24
761 1431 4.898265 AGCTTGTCTGATATCCTGAAGCTA 59.102 41.667 19.14 0.00 36.08 3.32
805 1475 6.761242 ACAAATGAGCAAACTAAAAAGGAACC 59.239 34.615 0.00 0.00 0.00 3.62
831 1501 1.208776 ACACCGGGATTAACCTGTAGC 59.791 52.381 6.32 0.00 43.20 3.58
849 1519 6.701400 CCGACATTGTATCAACTGATATGACA 59.299 38.462 2.85 0.00 39.03 3.58
881 1551 2.102420 TGCAAGTGGTAGGACCGATATG 59.898 50.000 0.00 0.00 42.58 1.78
924 1594 4.345257 TGAGCTGAGAACCTCTACTTGTTT 59.655 41.667 0.00 0.00 0.00 2.83
1035 1713 4.345257 AGAAGAAACACAAGGAGTAGCAGA 59.655 41.667 0.00 0.00 0.00 4.26
1036 1714 4.636249 AGAAGAAACACAAGGAGTAGCAG 58.364 43.478 0.00 0.00 0.00 4.24
1037 1715 4.503296 GGAGAAGAAACACAAGGAGTAGCA 60.503 45.833 0.00 0.00 0.00 3.49
1097 1775 0.886490 CCGTCTTTGTTGGCTCTGCT 60.886 55.000 0.00 0.00 0.00 4.24
1098 1776 1.576421 CCGTCTTTGTTGGCTCTGC 59.424 57.895 0.00 0.00 0.00 4.26
1099 1777 0.535102 ACCCGTCTTTGTTGGCTCTG 60.535 55.000 0.00 0.00 0.00 3.35
1100 1778 1.053424 TACCCGTCTTTGTTGGCTCT 58.947 50.000 0.00 0.00 0.00 4.09
1101 1779 1.804748 CTTACCCGTCTTTGTTGGCTC 59.195 52.381 0.00 0.00 0.00 4.70
1102 1780 1.892209 CTTACCCGTCTTTGTTGGCT 58.108 50.000 0.00 0.00 0.00 4.75
1103 1781 0.240145 GCTTACCCGTCTTTGTTGGC 59.760 55.000 0.00 0.00 0.00 4.52
1104 1782 1.892209 AGCTTACCCGTCTTTGTTGG 58.108 50.000 0.00 0.00 0.00 3.77
1105 1783 2.415512 GCTAGCTTACCCGTCTTTGTTG 59.584 50.000 7.70 0.00 0.00 3.33
1165 1843 1.359848 GGATCATGACGAACACGCTT 58.640 50.000 0.00 0.00 0.00 4.68
1198 2000 1.532868 CGGAGAACAGCTTTGACAAGG 59.467 52.381 0.00 0.00 0.00 3.61
1211 2013 1.079503 GGACAGCACATTCGGAGAAC 58.920 55.000 0.00 0.00 45.90 3.01
1319 2121 2.160205 GGACCTTACCAACTTGGCTTC 58.840 52.381 7.81 0.00 42.67 3.86
1342 2144 5.104402 TCTCACCTGATTAGCAATGAATGGA 60.104 40.000 0.00 0.00 0.00 3.41
1431 2236 3.444388 AGGTAACGAGACTGACATCTTCC 59.556 47.826 0.00 0.00 46.39 3.46
1449 2254 3.411446 CAAGTCATGGTGCAAAGAGGTA 58.589 45.455 0.00 0.00 0.00 3.08
1490 2295 7.814356 AGCTAGGTAGTACTATGAAAGGTACT 58.186 38.462 5.75 10.02 46.69 2.73
1509 2319 3.309296 TGGATCAAAGGGAGTAGCTAGG 58.691 50.000 0.00 0.00 0.00 3.02
1590 2400 6.056090 TGTGTTGTATAATAGTGGAGCCAA 57.944 37.500 0.00 0.00 0.00 4.52
1758 2583 4.263443 GCGAAACTCGTTTAAGCAAAACAA 59.737 37.500 13.18 0.00 46.59 2.83
1855 2693 6.424812 CCCTGCAACTTTATTTTTGGAGAAAG 59.575 38.462 4.60 0.00 42.15 2.62
2139 3347 3.626977 CAGCTAGCTTCAGATACTCACG 58.373 50.000 16.46 0.00 0.00 4.35
2329 3540 2.564504 TGAACAGATGAGGAGTGGACAG 59.435 50.000 0.00 0.00 0.00 3.51
2373 3585 7.464358 TGCAAATAGCTCGATTAAGTTTCTTC 58.536 34.615 0.00 0.00 45.94 2.87
2411 3623 2.527100 GACACGTAGTTTGGATCGGAG 58.473 52.381 0.00 0.00 41.61 4.63
2412 3624 1.135603 CGACACGTAGTTTGGATCGGA 60.136 52.381 0.00 0.00 41.61 4.55
2413 3625 1.265568 CGACACGTAGTTTGGATCGG 58.734 55.000 0.00 0.00 41.61 4.18
2414 3626 1.647213 CACGACACGTAGTTTGGATCG 59.353 52.381 0.00 0.00 41.61 3.69
2415 3627 1.990563 CCACGACACGTAGTTTGGATC 59.009 52.381 11.16 0.00 41.61 3.36
2416 3628 1.342174 ACCACGACACGTAGTTTGGAT 59.658 47.619 18.16 7.31 41.61 3.41
2417 3629 0.746063 ACCACGACACGTAGTTTGGA 59.254 50.000 18.16 0.00 41.61 3.53
2418 3630 1.574134 AACCACGACACGTAGTTTGG 58.426 50.000 13.38 13.38 38.35 3.28
2419 3631 3.661758 AAAACCACGACACGTAGTTTG 57.338 42.857 17.48 0.00 46.64 2.93
2421 3633 4.045636 ACTAAAACCACGACACGTAGTT 57.954 40.909 2.80 2.80 42.55 2.24
2423 3635 4.043750 TGAACTAAAACCACGACACGTAG 58.956 43.478 0.00 0.00 38.32 3.51
2424 3636 4.039151 TGAACTAAAACCACGACACGTA 57.961 40.909 0.00 0.00 38.32 3.57
2425 3637 2.891112 TGAACTAAAACCACGACACGT 58.109 42.857 0.00 0.00 42.36 4.49
2426 3638 3.929417 TTGAACTAAAACCACGACACG 57.071 42.857 0.00 0.00 0.00 4.49
2427 3639 6.748198 TCAAATTTGAACTAAAACCACGACAC 59.252 34.615 18.45 0.00 33.55 3.67
2428 3640 6.853720 TCAAATTTGAACTAAAACCACGACA 58.146 32.000 18.45 0.00 33.55 4.35
2429 3641 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
2480 3692 7.865530 TTATAATACTACTCCCATTGCTCCA 57.134 36.000 0.00 0.00 0.00 3.86
2643 3855 7.282585 TGGTGATTTACTCTATCCTTTCCATG 58.717 38.462 0.00 0.00 0.00 3.66
2654 3866 6.543465 CCAATGCATCTTGGTGATTTACTCTA 59.457 38.462 10.43 0.00 40.72 2.43
2691 3903 9.627123 CCATGAGGTTACTTCTTAATCCAATTA 57.373 33.333 0.00 0.00 0.00 1.40
2727 3939 8.215050 TGTTTCCTTCACATTTTAGAGGAGTTA 58.785 33.333 0.00 0.00 0.00 2.24
2796 4008 6.653989 AGGAACTTTTGAGAGAAACTGAAGA 58.346 36.000 0.00 0.00 27.25 2.87
2797 4009 6.934048 AGGAACTTTTGAGAGAAACTGAAG 57.066 37.500 0.00 0.00 27.25 3.02
2878 4094 6.390987 GCTTCATAGCCATTACATACGTAC 57.609 41.667 0.00 0.00 41.74 3.67
2973 4189 3.000724 GGATCTTTCTCGCTTGTGATTCG 59.999 47.826 0.00 0.00 0.00 3.34
3074 4311 1.336440 TGGTCAACAAGCATTTGTCGG 59.664 47.619 0.00 0.00 46.54 4.79
3115 4352 6.428385 AGCAGCAAGTGATTATTAACTCAC 57.572 37.500 0.00 6.56 41.65 3.51
3116 4353 6.094048 GGAAGCAGCAAGTGATTATTAACTCA 59.906 38.462 0.00 0.00 33.94 3.41
3117 4354 6.490534 GGAAGCAGCAAGTGATTATTAACTC 58.509 40.000 0.00 0.00 33.94 3.01
3157 4394 1.344953 ACACTCACCACTCCAGGCAA 61.345 55.000 0.00 0.00 0.00 4.52
3394 4631 5.997746 CCTGAAATGAAAGACAAGTGGACTA 59.002 40.000 0.00 0.00 0.00 2.59
3495 4732 1.525995 CACTGAAGTTGGCACCGGT 60.526 57.895 0.00 0.00 0.00 5.28
3821 5058 1.309499 CCGTGCTTCCGAGAGAGAGT 61.309 60.000 0.00 0.00 0.00 3.24
3885 5122 1.524621 CTGCCATGATGACCGGGAC 60.525 63.158 6.32 0.00 0.00 4.46
3923 5160 6.896643 GAAGAATTCTGCACCGTTTGCTCC 62.897 50.000 9.17 0.00 44.76 4.70
3997 5234 0.030501 ATCCCCGAGGGTGATAACCA 60.031 55.000 7.48 0.00 44.74 3.67
4087 5324 4.097892 CCTGTAACCAATTAAGCATCCCAC 59.902 45.833 0.00 0.00 0.00 4.61
4341 5578 1.926108 GTGGTGGAGAGACACTACCT 58.074 55.000 0.00 0.00 44.19 3.08
4354 5591 0.327924 TCTGCATACTTGGGTGGTGG 59.672 55.000 0.00 0.00 0.00 4.61
4688 5946 1.342275 TGCTATTCTTGGGGCAGCAAT 60.342 47.619 0.00 0.00 39.18 3.56
4826 6087 3.971245 AGAGAAGACTCCAATGACACC 57.029 47.619 0.00 0.00 43.53 4.16
5278 6540 2.505819 AGACCCTGCTCCGTAATCAAAT 59.494 45.455 0.00 0.00 0.00 2.32
5362 6624 6.940739 TCCTTTTGGACAGTTGAAAAATTCA 58.059 32.000 0.00 0.00 45.19 2.57
5391 6653 5.525378 GGTGGTGTGCAATTGTTATTTGAAA 59.475 36.000 7.40 0.00 0.00 2.69
5539 6801 0.035630 GCTCCACAGCCATCTTGACT 60.036 55.000 0.00 0.00 40.14 3.41
5591 6853 7.288810 TGAAAATAACCTTGAAACTCTGCAT 57.711 32.000 0.00 0.00 0.00 3.96
5608 6870 2.389042 TCGGGTGGCCCTGAAAATA 58.611 52.632 0.00 0.00 43.42 1.40
5757 7019 5.539582 TTTATACAGTTGAACCGCATGTC 57.460 39.130 0.00 0.00 0.00 3.06
5808 7070 5.650543 CCATAGTTGGAATTCGGGAAAAAG 58.349 41.667 0.00 0.00 46.92 2.27
5814 7076 1.949525 CAGCCATAGTTGGAATTCGGG 59.050 52.381 0.00 0.00 46.92 5.14
5817 7079 3.129287 CACCACAGCCATAGTTGGAATTC 59.871 47.826 0.00 0.00 46.92 2.17
5820 7084 1.702401 TCACCACAGCCATAGTTGGAA 59.298 47.619 0.00 0.00 46.92 3.53
5824 7088 4.019321 ACACTAATCACCACAGCCATAGTT 60.019 41.667 0.00 0.00 0.00 2.24
5899 7165 3.260740 CGCCGGTACCATACAAACTTAA 58.739 45.455 13.54 0.00 0.00 1.85
6041 7308 4.970662 TGTACTGACGTAACCCTATCAC 57.029 45.455 0.00 0.00 0.00 3.06
6062 7329 5.301805 CCCTGTGTGGAGTTTCTTTTAACAT 59.698 40.000 0.00 0.00 38.35 2.71
6079 7346 1.341531 CAGTTCGTCTCTTCCCTGTGT 59.658 52.381 0.00 0.00 0.00 3.72
6178 7448 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
6183 7453 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
6184 7454 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
6185 7455 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
6186 7456 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
6187 7457 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
6190 7460 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
6191 7461 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
6211 7481 2.123683 TTTCCCAAACCCTGCGCA 60.124 55.556 10.98 10.98 0.00 6.09
6212 7482 2.650778 CTTTCCCAAACCCTGCGC 59.349 61.111 0.00 0.00 0.00 6.09
6214 7484 1.152333 ACCCTTTCCCAAACCCTGC 60.152 57.895 0.00 0.00 0.00 4.85
6215 7485 0.541998 GGACCCTTTCCCAAACCCTG 60.542 60.000 0.00 0.00 38.70 4.45
6218 7488 0.892358 GTCGGACCCTTTCCCAAACC 60.892 60.000 0.00 0.00 42.27 3.27
6219 7489 0.892358 GGTCGGACCCTTTCCCAAAC 60.892 60.000 16.55 0.00 42.27 2.93
6220 7490 1.354168 TGGTCGGACCCTTTCCCAAA 61.354 55.000 23.81 0.00 42.27 3.28
6221 7491 1.770927 TGGTCGGACCCTTTCCCAA 60.771 57.895 23.81 0.00 42.27 4.12
6222 7492 2.122324 TGGTCGGACCCTTTCCCA 60.122 61.111 23.81 0.69 42.27 4.37
6223 7493 1.775934 AAGTGGTCGGACCCTTTCCC 61.776 60.000 23.81 5.51 42.27 3.97
6224 7494 0.109913 AAAGTGGTCGGACCCTTTCC 59.890 55.000 25.31 11.54 35.36 3.13
6225 7495 1.235724 CAAAGTGGTCGGACCCTTTC 58.764 55.000 26.88 15.90 36.95 2.62
6227 7497 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
6228 7498 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
6229 7499 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
6230 7500 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
6231 7501 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
6236 7506 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
6237 7507 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
6238 7508 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
6240 7510 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
6241 7511 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
6242 7512 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
6243 7513 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
6244 7514 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
6245 7515 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
6247 7517 3.055385 AGGAAAAGGCTGCGTACAATAGA 60.055 43.478 0.00 0.00 0.00 1.98
6248 7518 3.270877 AGGAAAAGGCTGCGTACAATAG 58.729 45.455 0.00 0.00 0.00 1.73
6249 7519 3.343941 AGGAAAAGGCTGCGTACAATA 57.656 42.857 0.00 0.00 0.00 1.90
6251 7521 2.224329 TGTAGGAAAAGGCTGCGTACAA 60.224 45.455 12.42 1.90 32.14 2.41
6254 7524 3.343941 AATGTAGGAAAAGGCTGCGTA 57.656 42.857 0.00 0.00 0.00 4.42
6256 7526 2.749621 AGAAATGTAGGAAAAGGCTGCG 59.250 45.455 0.00 0.00 0.00 5.18
6257 7527 3.507622 ACAGAAATGTAGGAAAAGGCTGC 59.492 43.478 0.00 0.00 0.00 5.25
6258 7528 6.655003 TCTTACAGAAATGTAGGAAAAGGCTG 59.345 38.462 0.00 0.00 29.32 4.85
6259 7529 6.779860 TCTTACAGAAATGTAGGAAAAGGCT 58.220 36.000 0.00 0.00 29.32 4.58
6261 7531 6.094186 GCCTCTTACAGAAATGTAGGAAAAGG 59.906 42.308 2.49 2.24 31.51 3.11
6262 7532 6.881602 AGCCTCTTACAGAAATGTAGGAAAAG 59.118 38.462 2.49 0.00 31.51 2.27
6263 7533 6.655003 CAGCCTCTTACAGAAATGTAGGAAAA 59.345 38.462 2.49 0.00 31.51 2.29
6264 7534 6.173339 CAGCCTCTTACAGAAATGTAGGAAA 58.827 40.000 2.49 0.00 31.51 3.13
6265 7535 5.248477 ACAGCCTCTTACAGAAATGTAGGAA 59.752 40.000 2.49 0.00 31.51 3.36
6266 7536 4.777896 ACAGCCTCTTACAGAAATGTAGGA 59.222 41.667 0.00 0.97 0.00 2.94
6267 7537 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
6269 7539 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
6270 7540 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
6273 7543 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
6287 7557 6.154363 AGAGAAATGTTTTGTTCCTGGAAACA 59.846 34.615 11.40 12.13 44.45 2.83
6288 7558 6.573434 AGAGAAATGTTTTGTTCCTGGAAAC 58.427 36.000 11.40 6.37 34.67 2.78
6290 7560 6.790232 AAGAGAAATGTTTTGTTCCTGGAA 57.210 33.333 4.68 4.68 0.00 3.53
6291 7561 6.790232 AAAGAGAAATGTTTTGTTCCTGGA 57.210 33.333 0.00 0.00 0.00 3.86
6292 7562 6.923508 GGTAAAGAGAAATGTTTTGTTCCTGG 59.076 38.462 0.00 0.00 0.00 4.45
6293 7563 6.636850 CGGTAAAGAGAAATGTTTTGTTCCTG 59.363 38.462 0.00 0.00 0.00 3.86
6294 7564 6.544564 TCGGTAAAGAGAAATGTTTTGTTCCT 59.455 34.615 0.00 0.00 0.00 3.36
6296 7566 6.635641 GGTCGGTAAAGAGAAATGTTTTGTTC 59.364 38.462 0.00 0.00 0.00 3.18
6297 7567 6.460537 GGGTCGGTAAAGAGAAATGTTTTGTT 60.461 38.462 0.00 0.00 0.00 2.83
6298 7568 5.009310 GGGTCGGTAAAGAGAAATGTTTTGT 59.991 40.000 0.00 0.00 0.00 2.83
6299 7569 5.009210 TGGGTCGGTAAAGAGAAATGTTTTG 59.991 40.000 0.00 0.00 0.00 2.44
6300 7570 5.134661 TGGGTCGGTAAAGAGAAATGTTTT 58.865 37.500 0.00 0.00 0.00 2.43
6301 7571 4.721132 TGGGTCGGTAAAGAGAAATGTTT 58.279 39.130 0.00 0.00 0.00 2.83
6303 7573 4.360951 TTGGGTCGGTAAAGAGAAATGT 57.639 40.909 0.00 0.00 0.00 2.71
6304 7574 5.472137 TCTTTTGGGTCGGTAAAGAGAAATG 59.528 40.000 0.00 0.00 34.07 2.32
6306 7576 5.038651 TCTTTTGGGTCGGTAAAGAGAAA 57.961 39.130 0.00 0.00 34.07 2.52
6307 7577 4.693042 TCTTTTGGGTCGGTAAAGAGAA 57.307 40.909 0.00 0.00 34.07 2.87
6308 7578 4.693042 TTCTTTTGGGTCGGTAAAGAGA 57.307 40.909 0.00 0.00 38.64 3.10
6309 7579 4.820173 AGTTTCTTTTGGGTCGGTAAAGAG 59.180 41.667 0.00 0.00 38.64 2.85
6328 7701 2.230660 CGAGAAAAAGGCCTCCAGTTT 58.769 47.619 5.23 4.40 0.00 2.66
6365 7738 3.666001 GTTGTTGTGTCTTGTGTGTACG 58.334 45.455 0.00 0.00 0.00 3.67
6464 7840 2.030805 CCTTCCAGTCGCAAAGAAAAGG 60.031 50.000 0.00 0.00 0.00 3.11
6489 7865 8.208575 AGGTTCAAGAGAAAAAGGAGTAGTAT 57.791 34.615 0.00 0.00 35.08 2.12
6494 7870 5.510430 ACAAGGTTCAAGAGAAAAAGGAGT 58.490 37.500 0.00 0.00 35.08 3.85
6497 7873 6.630071 TCAAACAAGGTTCAAGAGAAAAAGG 58.370 36.000 0.00 0.00 35.08 3.11
6498 7874 7.223387 CCATCAAACAAGGTTCAAGAGAAAAAG 59.777 37.037 0.00 0.00 35.08 2.27
6501 7877 5.656416 ACCATCAAACAAGGTTCAAGAGAAA 59.344 36.000 0.00 0.00 35.08 2.52
6503 7879 4.580167 CACCATCAAACAAGGTTCAAGAGA 59.420 41.667 0.00 0.00 32.15 3.10
6504 7880 4.339247 ACACCATCAAACAAGGTTCAAGAG 59.661 41.667 0.00 0.00 32.15 2.85
6506 7882 4.654091 ACACCATCAAACAAGGTTCAAG 57.346 40.909 0.00 0.00 32.15 3.02
6507 7883 4.950475 TGTACACCATCAAACAAGGTTCAA 59.050 37.500 0.00 0.00 32.15 2.69
6508 7884 4.527944 TGTACACCATCAAACAAGGTTCA 58.472 39.130 0.00 0.00 32.15 3.18
6509 7885 4.819630 TCTGTACACCATCAAACAAGGTTC 59.180 41.667 0.00 0.00 32.15 3.62
6510 7886 4.787551 TCTGTACACCATCAAACAAGGTT 58.212 39.130 0.00 0.00 32.15 3.50
6511 7887 4.431416 TCTGTACACCATCAAACAAGGT 57.569 40.909 0.00 0.00 35.65 3.50
6512 7888 4.320494 GCTTCTGTACACCATCAAACAAGG 60.320 45.833 0.00 0.00 0.00 3.61
6574 7950 4.521146 CCAAGTACAGGCATCAGATTTCT 58.479 43.478 0.00 0.00 0.00 2.52
6587 7963 0.870393 CAGTGCACTGCCAAGTACAG 59.130 55.000 32.39 6.51 41.08 2.74
6653 8029 3.719173 TTCATTTGTTTCGACAACCCC 57.281 42.857 7.64 0.00 0.00 4.95
6713 8093 2.372172 TGACCTCTCTTCCCTTGAAACC 59.628 50.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.