Multiple sequence alignment - TraesCS5A01G035500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G035500 chr5A 100.000 2657 0 0 1 2657 32770171 32772827 0.000000e+00 4907.0
1 TraesCS5A01G035500 chr5A 92.833 293 19 2 1 292 687871342 687871051 8.790000e-115 424.0
2 TraesCS5A01G035500 chr5A 91.809 293 22 2 1 292 673732160 673731869 8.850000e-110 407.0
3 TraesCS5A01G035500 chr5A 82.470 251 21 11 2019 2251 32749351 32749596 5.800000e-47 198.0
4 TraesCS5A01G035500 chr5A 81.116 233 21 13 2437 2657 32759494 32759715 5.880000e-37 165.0
5 TraesCS5A01G035500 chr5A 79.681 251 27 12 2019 2251 32231149 32231393 2.740000e-35 159.0
6 TraesCS5A01G035500 chr5A 84.000 125 18 1 2019 2141 32231006 32231130 4.650000e-23 119.0
7 TraesCS5A01G035500 chr5A 87.640 89 7 4 1359 1445 32748812 32748898 1.680000e-17 100.0
8 TraesCS5A01G035500 chr5A 85.714 91 10 2 2154 2244 32758892 32758979 2.820000e-15 93.5
9 TraesCS5A01G035500 chr5A 100.000 39 0 0 2387 2425 5000948 5000910 3.670000e-09 73.1
10 TraesCS5A01G035500 chr5B 92.190 717 30 10 1079 1771 38014605 38013891 0.000000e+00 990.0
11 TraesCS5A01G035500 chr5B 83.610 1025 72 45 1406 2344 38010202 38009188 0.000000e+00 874.0
12 TraesCS5A01G035500 chr5B 88.158 760 48 24 290 1042 38015330 38014606 0.000000e+00 867.0
13 TraesCS5A01G035500 chr5B 86.497 748 58 21 1012 1746 38796498 38797215 0.000000e+00 782.0
14 TraesCS5A01G035500 chr5B 79.167 720 60 44 290 971 38795822 38796489 1.470000e-112 416.0
15 TraesCS5A01G035500 chr5B 80.750 400 30 25 1991 2345 38798155 38798552 4.360000e-68 268.0
16 TraesCS5A01G035500 chr5B 86.667 240 20 8 1758 1995 38797271 38797500 3.390000e-64 255.0
17 TraesCS5A01G035500 chr5B 86.809 235 20 4 2425 2657 38012295 38012070 4.390000e-63 252.0
18 TraesCS5A01G035500 chr5B 86.404 228 28 1 986 1210 37980099 37979872 2.040000e-61 246.0
19 TraesCS5A01G035500 chr5B 79.625 373 33 20 1904 2254 37978230 37977879 7.400000e-56 228.0
20 TraesCS5A01G035500 chr5B 86.070 201 18 3 2458 2657 38798966 38799157 9.640000e-50 207.0
21 TraesCS5A01G035500 chr5B 78.846 260 22 16 2019 2254 38045061 38044811 7.670000e-31 145.0
22 TraesCS5A01G035500 chr5B 88.034 117 11 3 2230 2345 38012462 38012348 4.610000e-28 135.0
23 TraesCS5A01G035500 chr5B 76.341 317 34 20 1973 2251 38767980 38768293 5.970000e-27 132.0
24 TraesCS5A01G035500 chr5B 82.581 155 16 7 2055 2198 38013898 38013744 2.780000e-25 126.0
25 TraesCS5A01G035500 chr5B 82.119 151 16 6 1343 1483 37979668 37979519 4.650000e-23 119.0
26 TraesCS5A01G035500 chr5B 87.500 96 9 1 2253 2345 38768397 38768492 1.010000e-19 108.0
27 TraesCS5A01G035500 chr5B 83.607 122 9 5 1359 1470 38045551 38045431 1.300000e-18 104.0
28 TraesCS5A01G035500 chr5B 94.828 58 2 1 1368 1424 38034361 38034304 3.640000e-14 89.8
29 TraesCS5A01G035500 chr5B 97.561 41 1 0 2344 2384 38009157 38009117 1.320000e-08 71.3
30 TraesCS5A01G035500 chr5B 95.122 41 2 0 2344 2384 38798582 38798622 6.140000e-07 65.8
31 TraesCS5A01G035500 chr2A 92.833 293 20 1 1 292 613189860 613189568 8.790000e-115 424.0
32 TraesCS5A01G035500 chr2A 91.096 292 25 1 2 292 44849587 44849296 6.890000e-106 394.0
33 TraesCS5A01G035500 chr7A 92.491 293 20 2 1 292 529436680 529436389 4.090000e-113 418.0
34 TraesCS5A01G035500 chr7A 91.045 268 22 2 3 269 129257129 129257395 6.990000e-96 361.0
35 TraesCS5A01G035500 chr6A 92.491 293 20 2 1 292 145217668 145217377 4.090000e-113 418.0
36 TraesCS5A01G035500 chr6A 94.737 38 0 2 2388 2425 500132723 500132688 1.030000e-04 58.4
37 TraesCS5A01G035500 chr3A 91.753 291 21 2 3 292 509024280 509024568 4.120000e-108 401.0
38 TraesCS5A01G035500 chr1A 88.737 293 32 1 1 292 514667729 514667437 9.040000e-95 357.0
39 TraesCS5A01G035500 chr5D 76.771 607 69 41 909 1483 42960717 42961283 9.370000e-70 274.0
40 TraesCS5A01G035500 chr5D 77.609 460 45 29 1928 2345 42961615 42962058 2.660000e-55 226.0
41 TraesCS5A01G035500 chr5D 83.607 122 9 6 1359 1470 42796394 42796274 1.300000e-18 104.0
42 TraesCS5A01G035500 chr5D 86.667 90 11 1 905 993 42796751 42796662 6.050000e-17 99.0
43 TraesCS5A01G035500 chr2D 100.000 40 0 0 2386 2425 116586965 116586926 1.020000e-09 75.0
44 TraesCS5A01G035500 chr1D 97.619 42 1 0 2384 2425 9006220 9006261 3.670000e-09 73.1
45 TraesCS5A01G035500 chr7D 97.436 39 1 0 2387 2425 465894112 465894150 1.710000e-07 67.6
46 TraesCS5A01G035500 chr3D 97.500 40 0 1 2386 2425 26120314 26120352 1.710000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G035500 chr5A 32770171 32772827 2656 False 4907.000000 4907 100.000000 1 2657 1 chr5A.!!$F1 2656
1 TraesCS5A01G035500 chr5B 38009117 38015330 6213 True 473.614286 990 88.420429 290 2657 7 chr5B.!!$R3 2367
2 TraesCS5A01G035500 chr5B 38795822 38799157 3335 False 332.300000 782 85.712167 290 2657 6 chr5B.!!$F2 2367
3 TraesCS5A01G035500 chr5D 42960717 42962058 1341 False 250.000000 274 77.190000 909 2345 2 chr5D.!!$F1 1436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.034896 GTACCTGGCCCATCATACGG 59.965 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1820 6087 0.107606 ATACGCCCCACATTACGCAA 60.108 50.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.405892 CCAAAGTTGCTCTCGGTTTG 57.594 50.000 0.00 0.00 0.00 2.93
20 21 1.001378 CCAAAGTTGCTCTCGGTTTGG 60.001 52.381 0.00 0.00 40.80 3.28
21 22 1.001378 CAAAGTTGCTCTCGGTTTGGG 60.001 52.381 0.00 0.00 0.00 4.12
22 23 0.537371 AAGTTGCTCTCGGTTTGGGG 60.537 55.000 0.00 0.00 0.00 4.96
23 24 2.282180 TTGCTCTCGGTTTGGGGC 60.282 61.111 0.00 0.00 0.00 5.80
24 25 3.860930 TTGCTCTCGGTTTGGGGCC 62.861 63.158 0.00 0.00 0.00 5.80
25 26 4.344865 GCTCTCGGTTTGGGGCCA 62.345 66.667 4.39 0.00 0.00 5.36
26 27 2.434331 CTCTCGGTTTGGGGCCAA 59.566 61.111 4.39 0.00 0.00 4.52
27 28 1.228429 CTCTCGGTTTGGGGCCAAA 60.228 57.895 4.39 0.00 42.77 3.28
28 29 1.228429 TCTCGGTTTGGGGCCAAAG 60.228 57.895 4.39 0.00 45.16 2.77
32 33 2.915137 GTTTGGGGCCAAAGCGGA 60.915 61.111 4.39 0.00 45.16 5.54
33 34 2.915137 TTTGGGGCCAAAGCGGAC 60.915 61.111 4.39 0.00 45.59 4.79
38 39 3.758172 GGCCAAAGCGGACAGAAA 58.242 55.556 0.00 0.00 45.64 2.52
39 40 1.581447 GGCCAAAGCGGACAGAAAG 59.419 57.895 0.00 0.00 45.64 2.62
40 41 1.081175 GCCAAAGCGGACAGAAAGC 60.081 57.895 0.00 0.00 36.56 3.51
41 42 1.207593 CCAAAGCGGACAGAAAGCG 59.792 57.895 0.00 0.00 36.56 4.68
42 43 1.207593 CAAAGCGGACAGAAAGCGG 59.792 57.895 0.00 0.00 35.78 5.52
43 44 1.070786 AAAGCGGACAGAAAGCGGA 59.929 52.632 0.00 0.00 35.78 5.54
44 45 1.228657 AAAGCGGACAGAAAGCGGAC 61.229 55.000 0.00 0.00 35.78 4.79
45 46 3.479269 GCGGACAGAAAGCGGACG 61.479 66.667 0.00 0.00 0.00 4.79
46 47 2.049433 CGGACAGAAAGCGGACGT 60.049 61.111 0.00 0.00 0.00 4.34
47 48 2.087009 CGGACAGAAAGCGGACGTC 61.087 63.158 7.13 7.13 0.00 4.34
48 49 1.289380 GGACAGAAAGCGGACGTCT 59.711 57.895 16.46 0.00 0.00 4.18
49 50 0.319641 GGACAGAAAGCGGACGTCTT 60.320 55.000 16.46 0.84 0.00 3.01
50 51 1.061485 GACAGAAAGCGGACGTCTTC 58.939 55.000 16.46 11.12 0.00 2.87
51 52 0.663568 ACAGAAAGCGGACGTCTTCG 60.664 55.000 16.46 12.60 43.34 3.79
61 62 4.436653 CGTCTTCGTGTCCTCGTC 57.563 61.111 0.00 0.00 0.00 4.20
62 63 1.509370 CGTCTTCGTGTCCTCGTCG 60.509 63.158 0.00 0.00 0.00 5.12
63 64 1.573436 GTCTTCGTGTCCTCGTCGT 59.427 57.895 0.00 0.00 0.00 4.34
64 65 0.452452 GTCTTCGTGTCCTCGTCGTC 60.452 60.000 0.00 0.00 0.00 4.20
65 66 0.602106 TCTTCGTGTCCTCGTCGTCT 60.602 55.000 0.00 0.00 0.00 4.18
66 67 0.452950 CTTCGTGTCCTCGTCGTCTG 60.453 60.000 0.00 0.00 0.00 3.51
67 68 1.162181 TTCGTGTCCTCGTCGTCTGT 61.162 55.000 0.00 0.00 0.00 3.41
68 69 1.154450 CGTGTCCTCGTCGTCTGTC 60.154 63.158 0.00 0.00 0.00 3.51
69 70 1.566882 CGTGTCCTCGTCGTCTGTCT 61.567 60.000 0.00 0.00 0.00 3.41
70 71 0.110147 GTGTCCTCGTCGTCTGTCTG 60.110 60.000 0.00 0.00 0.00 3.51
71 72 0.534427 TGTCCTCGTCGTCTGTCTGT 60.534 55.000 0.00 0.00 0.00 3.41
72 73 0.110147 GTCCTCGTCGTCTGTCTGTG 60.110 60.000 0.00 0.00 0.00 3.66
73 74 0.534427 TCCTCGTCGTCTGTCTGTGT 60.534 55.000 0.00 0.00 0.00 3.72
74 75 0.110147 CCTCGTCGTCTGTCTGTGTC 60.110 60.000 0.00 0.00 0.00 3.67
75 76 0.110147 CTCGTCGTCTGTCTGTGTCC 60.110 60.000 0.00 0.00 0.00 4.02
76 77 1.440518 CGTCGTCTGTCTGTGTCCG 60.441 63.158 0.00 0.00 0.00 4.79
77 78 1.653115 GTCGTCTGTCTGTGTCCGT 59.347 57.895 0.00 0.00 0.00 4.69
78 79 0.385723 GTCGTCTGTCTGTGTCCGTC 60.386 60.000 0.00 0.00 0.00 4.79
79 80 1.081376 CGTCTGTCTGTGTCCGTCC 60.081 63.158 0.00 0.00 0.00 4.79
80 81 1.516365 CGTCTGTCTGTGTCCGTCCT 61.516 60.000 0.00 0.00 0.00 3.85
81 82 0.241481 GTCTGTCTGTGTCCGTCCTC 59.759 60.000 0.00 0.00 0.00 3.71
82 83 1.210413 CTGTCTGTGTCCGTCCTCG 59.790 63.158 0.00 0.00 0.00 4.63
83 84 1.228033 TGTCTGTGTCCGTCCTCGA 60.228 57.895 0.00 0.00 39.71 4.04
84 85 1.209640 GTCTGTGTCCGTCCTCGAC 59.790 63.158 0.00 0.00 39.71 4.20
85 86 1.970114 TCTGTGTCCGTCCTCGACC 60.970 63.158 0.00 0.00 39.71 4.79
86 87 2.987547 TGTGTCCGTCCTCGACCC 60.988 66.667 0.00 0.00 39.71 4.46
87 88 3.756727 GTGTCCGTCCTCGACCCC 61.757 72.222 0.00 0.00 39.71 4.95
88 89 4.289101 TGTCCGTCCTCGACCCCA 62.289 66.667 0.00 0.00 39.71 4.96
89 90 3.756727 GTCCGTCCTCGACCCCAC 61.757 72.222 0.00 0.00 39.71 4.61
92 93 3.760035 CGTCCTCGACCCCACCTG 61.760 72.222 0.00 0.00 39.71 4.00
93 94 4.083862 GTCCTCGACCCCACCTGC 62.084 72.222 0.00 0.00 0.00 4.85
96 97 4.394712 CTCGACCCCACCTGCCAC 62.395 72.222 0.00 0.00 0.00 5.01
97 98 4.954118 TCGACCCCACCTGCCACT 62.954 66.667 0.00 0.00 0.00 4.00
98 99 4.394712 CGACCCCACCTGCCACTC 62.395 72.222 0.00 0.00 0.00 3.51
99 100 2.930562 GACCCCACCTGCCACTCT 60.931 66.667 0.00 0.00 0.00 3.24
100 101 2.930562 ACCCCACCTGCCACTCTC 60.931 66.667 0.00 0.00 0.00 3.20
101 102 2.608988 CCCCACCTGCCACTCTCT 60.609 66.667 0.00 0.00 0.00 3.10
102 103 2.227036 CCCCACCTGCCACTCTCTT 61.227 63.158 0.00 0.00 0.00 2.85
103 104 1.298014 CCCACCTGCCACTCTCTTC 59.702 63.158 0.00 0.00 0.00 2.87
104 105 1.197430 CCCACCTGCCACTCTCTTCT 61.197 60.000 0.00 0.00 0.00 2.85
105 106 0.689623 CCACCTGCCACTCTCTTCTT 59.310 55.000 0.00 0.00 0.00 2.52
106 107 1.072965 CCACCTGCCACTCTCTTCTTT 59.927 52.381 0.00 0.00 0.00 2.52
107 108 2.487986 CCACCTGCCACTCTCTTCTTTT 60.488 50.000 0.00 0.00 0.00 2.27
108 109 3.217626 CACCTGCCACTCTCTTCTTTTT 58.782 45.455 0.00 0.00 0.00 1.94
109 110 3.004106 CACCTGCCACTCTCTTCTTTTTG 59.996 47.826 0.00 0.00 0.00 2.44
110 111 3.217626 CCTGCCACTCTCTTCTTTTTGT 58.782 45.455 0.00 0.00 0.00 2.83
111 112 4.141482 ACCTGCCACTCTCTTCTTTTTGTA 60.141 41.667 0.00 0.00 0.00 2.41
112 113 4.214332 CCTGCCACTCTCTTCTTTTTGTAC 59.786 45.833 0.00 0.00 0.00 2.90
113 114 4.134563 TGCCACTCTCTTCTTTTTGTACC 58.865 43.478 0.00 0.00 0.00 3.34
114 115 4.141482 TGCCACTCTCTTCTTTTTGTACCT 60.141 41.667 0.00 0.00 0.00 3.08
115 116 4.214332 GCCACTCTCTTCTTTTTGTACCTG 59.786 45.833 0.00 0.00 0.00 4.00
116 117 4.757149 CCACTCTCTTCTTTTTGTACCTGG 59.243 45.833 0.00 0.00 0.00 4.45
117 118 4.214332 CACTCTCTTCTTTTTGTACCTGGC 59.786 45.833 0.00 0.00 0.00 4.85
118 119 3.751518 TCTCTTCTTTTTGTACCTGGCC 58.248 45.455 0.00 0.00 0.00 5.36
119 120 2.820197 CTCTTCTTTTTGTACCTGGCCC 59.180 50.000 0.00 0.00 0.00 5.80
120 121 2.175931 TCTTCTTTTTGTACCTGGCCCA 59.824 45.455 0.00 0.00 0.00 5.36
121 122 2.990740 TCTTTTTGTACCTGGCCCAT 57.009 45.000 0.00 0.00 0.00 4.00
122 123 2.802719 TCTTTTTGTACCTGGCCCATC 58.197 47.619 0.00 0.00 0.00 3.51
123 124 2.109128 TCTTTTTGTACCTGGCCCATCA 59.891 45.455 0.00 0.00 0.00 3.07
124 125 2.917713 TTTTGTACCTGGCCCATCAT 57.082 45.000 0.00 0.00 0.00 2.45
125 126 4.017958 TCTTTTTGTACCTGGCCCATCATA 60.018 41.667 0.00 0.00 0.00 2.15
126 127 3.290948 TTTGTACCTGGCCCATCATAC 57.709 47.619 0.00 0.00 0.00 2.39
127 128 0.756294 TGTACCTGGCCCATCATACG 59.244 55.000 0.00 0.00 0.00 3.06
128 129 0.034896 GTACCTGGCCCATCATACGG 59.965 60.000 0.00 0.00 0.00 4.02
129 130 0.105401 TACCTGGCCCATCATACGGA 60.105 55.000 0.00 0.00 0.00 4.69
130 131 1.071471 CCTGGCCCATCATACGGAC 59.929 63.158 0.00 0.00 0.00 4.79
131 132 1.695114 CCTGGCCCATCATACGGACA 61.695 60.000 0.00 0.00 35.27 4.02
132 133 0.180171 CTGGCCCATCATACGGACAA 59.820 55.000 0.00 0.00 36.48 3.18
133 134 0.621082 TGGCCCATCATACGGACAAA 59.379 50.000 0.00 0.00 32.84 2.83
134 135 1.004862 TGGCCCATCATACGGACAAAA 59.995 47.619 0.00 0.00 32.84 2.44
135 136 2.306847 GGCCCATCATACGGACAAAAT 58.693 47.619 0.00 0.00 0.00 1.82
136 137 2.293399 GGCCCATCATACGGACAAAATC 59.707 50.000 0.00 0.00 0.00 2.17
137 138 2.293399 GCCCATCATACGGACAAAATCC 59.707 50.000 0.00 0.00 45.20 3.01
148 149 3.584834 GGACAAAATCCGGACAAAATGG 58.415 45.455 6.12 0.00 37.88 3.16
149 150 3.584834 GACAAAATCCGGACAAAATGGG 58.415 45.455 6.12 0.00 0.00 4.00
150 151 2.969262 ACAAAATCCGGACAAAATGGGT 59.031 40.909 6.12 0.00 0.00 4.51
151 152 4.153411 ACAAAATCCGGACAAAATGGGTA 58.847 39.130 6.12 0.00 0.00 3.69
152 153 4.775253 ACAAAATCCGGACAAAATGGGTAT 59.225 37.500 6.12 0.00 0.00 2.73
153 154 5.952947 ACAAAATCCGGACAAAATGGGTATA 59.047 36.000 6.12 0.00 0.00 1.47
154 155 6.096282 ACAAAATCCGGACAAAATGGGTATAG 59.904 38.462 6.12 0.00 0.00 1.31
155 156 5.640158 AATCCGGACAAAATGGGTATAGA 57.360 39.130 6.12 0.00 0.00 1.98
156 157 5.843019 ATCCGGACAAAATGGGTATAGAT 57.157 39.130 6.12 0.00 0.00 1.98
157 158 5.640158 TCCGGACAAAATGGGTATAGATT 57.360 39.130 0.00 0.00 0.00 2.40
158 159 6.008696 TCCGGACAAAATGGGTATAGATTT 57.991 37.500 0.00 0.00 0.00 2.17
159 160 7.139287 TCCGGACAAAATGGGTATAGATTTA 57.861 36.000 0.00 0.00 0.00 1.40
160 161 7.221450 TCCGGACAAAATGGGTATAGATTTAG 58.779 38.462 0.00 0.00 0.00 1.85
161 162 6.430000 CCGGACAAAATGGGTATAGATTTAGG 59.570 42.308 0.00 0.00 0.00 2.69
162 163 6.430000 CGGACAAAATGGGTATAGATTTAGGG 59.570 42.308 0.00 0.00 0.00 3.53
163 164 7.295340 GGACAAAATGGGTATAGATTTAGGGT 58.705 38.462 0.00 0.00 0.00 4.34
164 165 8.442374 GGACAAAATGGGTATAGATTTAGGGTA 58.558 37.037 0.00 0.00 0.00 3.69
165 166 9.503399 GACAAAATGGGTATAGATTTAGGGTAG 57.497 37.037 0.00 0.00 0.00 3.18
166 167 7.942894 ACAAAATGGGTATAGATTTAGGGTAGC 59.057 37.037 0.00 0.00 0.00 3.58
167 168 7.642094 AAATGGGTATAGATTTAGGGTAGCA 57.358 36.000 0.00 0.00 0.00 3.49
168 169 6.875972 ATGGGTATAGATTTAGGGTAGCAG 57.124 41.667 0.00 0.00 0.00 4.24
169 170 4.530946 TGGGTATAGATTTAGGGTAGCAGC 59.469 45.833 0.00 0.00 0.00 5.25
170 171 4.381718 GGGTATAGATTTAGGGTAGCAGCG 60.382 50.000 0.00 0.00 0.00 5.18
171 172 4.220163 GGTATAGATTTAGGGTAGCAGCGT 59.780 45.833 0.00 0.00 0.00 5.07
172 173 4.957684 ATAGATTTAGGGTAGCAGCGTT 57.042 40.909 0.00 0.00 0.00 4.84
173 174 2.906354 AGATTTAGGGTAGCAGCGTTG 58.094 47.619 0.00 0.00 0.00 4.10
174 175 1.940613 GATTTAGGGTAGCAGCGTTGG 59.059 52.381 0.16 0.00 0.00 3.77
175 176 0.035820 TTTAGGGTAGCAGCGTTGGG 60.036 55.000 0.16 0.00 0.00 4.12
176 177 2.530958 TTAGGGTAGCAGCGTTGGGC 62.531 60.000 0.16 0.00 44.05 5.36
186 187 2.972505 CGTTGGGCGCAGTGAGTT 60.973 61.111 10.83 0.00 0.00 3.01
187 188 2.542907 CGTTGGGCGCAGTGAGTTT 61.543 57.895 10.83 0.00 0.00 2.66
188 189 1.008538 GTTGGGCGCAGTGAGTTTG 60.009 57.895 10.83 0.00 0.00 2.93
189 190 1.453015 TTGGGCGCAGTGAGTTTGT 60.453 52.632 10.83 0.00 0.00 2.83
190 191 1.723608 TTGGGCGCAGTGAGTTTGTG 61.724 55.000 10.83 0.00 0.00 3.33
194 195 2.050985 GCAGTGAGTTTGTGCGGC 60.051 61.111 0.00 0.00 0.00 6.53
195 196 2.639286 CAGTGAGTTTGTGCGGCC 59.361 61.111 0.00 0.00 0.00 6.13
196 197 1.893808 CAGTGAGTTTGTGCGGCCT 60.894 57.895 0.00 0.00 0.00 5.19
197 198 1.598130 AGTGAGTTTGTGCGGCCTC 60.598 57.895 0.00 0.00 0.00 4.70
198 199 1.598130 GTGAGTTTGTGCGGCCTCT 60.598 57.895 0.00 0.00 0.00 3.69
199 200 1.597854 TGAGTTTGTGCGGCCTCTG 60.598 57.895 0.00 0.00 0.00 3.35
200 201 1.598130 GAGTTTGTGCGGCCTCTGT 60.598 57.895 0.00 0.00 0.00 3.41
201 202 1.569479 GAGTTTGTGCGGCCTCTGTC 61.569 60.000 0.00 0.00 0.00 3.51
202 203 2.281484 TTTGTGCGGCCTCTGTCC 60.281 61.111 0.00 0.00 0.00 4.02
210 211 3.423154 GCCTCTGTCCGGCGTTTG 61.423 66.667 6.01 0.00 37.87 2.93
211 212 2.030562 CCTCTGTCCGGCGTTTGT 59.969 61.111 6.01 0.00 0.00 2.83
212 213 1.597027 CCTCTGTCCGGCGTTTGTT 60.597 57.895 6.01 0.00 0.00 2.83
213 214 1.566018 CCTCTGTCCGGCGTTTGTTC 61.566 60.000 6.01 0.00 0.00 3.18
214 215 0.600255 CTCTGTCCGGCGTTTGTTCT 60.600 55.000 6.01 0.00 0.00 3.01
215 216 0.599204 TCTGTCCGGCGTTTGTTCTC 60.599 55.000 6.01 0.00 0.00 2.87
216 217 1.566018 CTGTCCGGCGTTTGTTCTCC 61.566 60.000 6.01 0.00 0.00 3.71
217 218 2.031465 TCCGGCGTTTGTTCTCCC 59.969 61.111 6.01 0.00 0.00 4.30
218 219 2.032071 CCGGCGTTTGTTCTCCCT 59.968 61.111 6.01 0.00 0.00 4.20
219 220 1.186917 TCCGGCGTTTGTTCTCCCTA 61.187 55.000 6.01 0.00 0.00 3.53
220 221 0.107848 CCGGCGTTTGTTCTCCCTAT 60.108 55.000 6.01 0.00 0.00 2.57
221 222 1.677820 CCGGCGTTTGTTCTCCCTATT 60.678 52.381 6.01 0.00 0.00 1.73
222 223 2.081462 CGGCGTTTGTTCTCCCTATTT 58.919 47.619 0.00 0.00 0.00 1.40
223 224 2.486592 CGGCGTTTGTTCTCCCTATTTT 59.513 45.455 0.00 0.00 0.00 1.82
224 225 3.057806 CGGCGTTTGTTCTCCCTATTTTT 60.058 43.478 0.00 0.00 0.00 1.94
225 226 4.154556 CGGCGTTTGTTCTCCCTATTTTTA 59.845 41.667 0.00 0.00 0.00 1.52
226 227 5.396484 GGCGTTTGTTCTCCCTATTTTTAC 58.604 41.667 0.00 0.00 0.00 2.01
227 228 5.396484 GCGTTTGTTCTCCCTATTTTTACC 58.604 41.667 0.00 0.00 0.00 2.85
228 229 5.182570 GCGTTTGTTCTCCCTATTTTTACCT 59.817 40.000 0.00 0.00 0.00 3.08
229 230 6.622245 GCGTTTGTTCTCCCTATTTTTACCTC 60.622 42.308 0.00 0.00 0.00 3.85
230 231 6.428771 CGTTTGTTCTCCCTATTTTTACCTCA 59.571 38.462 0.00 0.00 0.00 3.86
231 232 7.120726 CGTTTGTTCTCCCTATTTTTACCTCAT 59.879 37.037 0.00 0.00 0.00 2.90
232 233 9.457436 GTTTGTTCTCCCTATTTTTACCTCATA 57.543 33.333 0.00 0.00 0.00 2.15
233 234 9.457436 TTTGTTCTCCCTATTTTTACCTCATAC 57.543 33.333 0.00 0.00 0.00 2.39
234 235 7.270047 TGTTCTCCCTATTTTTACCTCATACG 58.730 38.462 0.00 0.00 0.00 3.06
235 236 6.415206 TCTCCCTATTTTTACCTCATACGG 57.585 41.667 0.00 0.00 0.00 4.02
236 237 6.138263 TCTCCCTATTTTTACCTCATACGGA 58.862 40.000 0.00 0.00 0.00 4.69
237 238 6.041296 TCTCCCTATTTTTACCTCATACGGAC 59.959 42.308 0.00 0.00 0.00 4.79
238 239 5.662208 TCCCTATTTTTACCTCATACGGACA 59.338 40.000 0.00 0.00 0.00 4.02
239 240 6.156602 TCCCTATTTTTACCTCATACGGACAA 59.843 38.462 0.00 0.00 0.00 3.18
240 241 6.824704 CCCTATTTTTACCTCATACGGACAAA 59.175 38.462 0.00 0.00 0.00 2.83
241 242 7.337436 CCCTATTTTTACCTCATACGGACAAAA 59.663 37.037 0.00 0.00 0.00 2.44
242 243 8.899771 CCTATTTTTACCTCATACGGACAAAAT 58.100 33.333 0.00 0.00 35.44 1.82
243 244 9.931210 CTATTTTTACCTCATACGGACAAAATC 57.069 33.333 0.00 0.00 34.32 2.17
244 245 6.746745 TTTTACCTCATACGGACAAAATCC 57.253 37.500 0.00 0.00 45.20 3.01
254 255 3.282831 GGACAAAATCCGGACAAACTG 57.717 47.619 6.12 2.52 37.88 3.16
255 256 2.030274 GGACAAAATCCGGACAAACTGG 60.030 50.000 6.12 0.00 45.93 4.00
256 257 1.960689 ACAAAATCCGGACAAACTGGG 59.039 47.619 6.12 0.00 44.73 4.45
257 258 1.960689 CAAAATCCGGACAAACTGGGT 59.039 47.619 6.12 0.00 44.73 4.51
258 259 3.150767 CAAAATCCGGACAAACTGGGTA 58.849 45.455 6.12 0.00 44.73 3.69
259 260 3.732048 AAATCCGGACAAACTGGGTAT 57.268 42.857 6.12 0.00 44.73 2.73
260 261 4.847990 AAATCCGGACAAACTGGGTATA 57.152 40.909 6.12 0.00 44.73 1.47
261 262 4.417426 AATCCGGACAAACTGGGTATAG 57.583 45.455 6.12 0.00 44.73 1.31
262 263 3.104519 TCCGGACAAACTGGGTATAGA 57.895 47.619 0.00 0.00 44.73 1.98
263 264 3.649843 TCCGGACAAACTGGGTATAGAT 58.350 45.455 0.00 0.00 44.73 1.98
264 265 4.035112 TCCGGACAAACTGGGTATAGATT 58.965 43.478 0.00 0.00 44.73 2.40
265 266 4.472108 TCCGGACAAACTGGGTATAGATTT 59.528 41.667 0.00 0.00 44.73 2.17
266 267 5.662208 TCCGGACAAACTGGGTATAGATTTA 59.338 40.000 0.00 0.00 44.73 1.40
267 268 6.156602 TCCGGACAAACTGGGTATAGATTTAA 59.843 38.462 0.00 0.00 44.73 1.52
268 269 6.482308 CCGGACAAACTGGGTATAGATTTAAG 59.518 42.308 0.00 0.00 41.14 1.85
269 270 6.482308 CGGACAAACTGGGTATAGATTTAAGG 59.518 42.308 0.00 0.00 0.00 2.69
270 271 7.344134 GGACAAACTGGGTATAGATTTAAGGT 58.656 38.462 0.00 0.00 0.00 3.50
271 272 7.498239 GGACAAACTGGGTATAGATTTAAGGTC 59.502 40.741 0.00 0.00 0.00 3.85
272 273 7.046033 ACAAACTGGGTATAGATTTAAGGTCG 58.954 38.462 0.00 0.00 0.00 4.79
273 274 6.803366 AACTGGGTATAGATTTAAGGTCGT 57.197 37.500 0.00 0.00 0.00 4.34
274 275 6.158023 ACTGGGTATAGATTTAAGGTCGTG 57.842 41.667 0.00 0.00 0.00 4.35
275 276 4.952460 TGGGTATAGATTTAAGGTCGTGC 58.048 43.478 0.00 0.00 0.00 5.34
276 277 3.985925 GGGTATAGATTTAAGGTCGTGCG 59.014 47.826 0.00 0.00 0.00 5.34
277 278 3.985925 GGTATAGATTTAAGGTCGTGCGG 59.014 47.826 0.00 0.00 0.00 5.69
278 279 3.814005 ATAGATTTAAGGTCGTGCGGT 57.186 42.857 0.00 0.00 0.00 5.68
279 280 1.722011 AGATTTAAGGTCGTGCGGTG 58.278 50.000 0.00 0.00 0.00 4.94
280 281 0.725117 GATTTAAGGTCGTGCGGTGG 59.275 55.000 0.00 0.00 0.00 4.61
281 282 0.322322 ATTTAAGGTCGTGCGGTGGA 59.678 50.000 0.00 0.00 0.00 4.02
282 283 0.320073 TTTAAGGTCGTGCGGTGGAG 60.320 55.000 0.00 0.00 0.00 3.86
283 284 1.466025 TTAAGGTCGTGCGGTGGAGT 61.466 55.000 0.00 0.00 0.00 3.85
284 285 1.466025 TAAGGTCGTGCGGTGGAGTT 61.466 55.000 0.00 0.00 0.00 3.01
285 286 2.989055 AAGGTCGTGCGGTGGAGTTG 62.989 60.000 0.00 0.00 0.00 3.16
286 287 3.041940 GTCGTGCGGTGGAGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
287 288 4.980805 TCGTGCGGTGGAGTTGGC 62.981 66.667 0.00 0.00 0.00 4.52
298 299 3.497942 GGTGGAGTTGGCCTAAGAAAAGA 60.498 47.826 3.32 0.00 0.00 2.52
310 311 5.046950 GCCTAAGAAAAGAGTGGAGAGAGAA 60.047 44.000 0.00 0.00 0.00 2.87
332 339 4.104383 AGAGGATGCCTTGAAAACTTGA 57.896 40.909 0.00 0.00 31.76 3.02
333 340 3.823304 AGAGGATGCCTTGAAAACTTGAC 59.177 43.478 0.00 0.00 31.76 3.18
334 341 3.565307 AGGATGCCTTGAAAACTTGACA 58.435 40.909 0.00 0.00 0.00 3.58
335 342 3.319122 AGGATGCCTTGAAAACTTGACAC 59.681 43.478 0.00 0.00 0.00 3.67
336 343 2.842208 TGCCTTGAAAACTTGACACG 57.158 45.000 0.00 0.00 0.00 4.49
375 382 4.143543 TGCATCATCACTTTTGTCTTGGA 58.856 39.130 0.00 0.00 0.00 3.53
384 391 5.637387 TCACTTTTGTCTTGGAAAAACTTGC 59.363 36.000 0.00 0.00 0.00 4.01
442 449 1.822990 CTTTGTGAAGGCATGCCATCT 59.177 47.619 34.66 21.82 38.92 2.90
449 456 2.198287 GGCATGCCATCTTCGCCAT 61.198 57.895 32.08 0.00 42.50 4.40
533 563 3.132111 TGAGCTCATGCACGTATTTCCTA 59.868 43.478 13.74 0.00 42.74 2.94
574 609 4.734398 AAGGAAGAAATTGTGTGTGCAA 57.266 36.364 0.00 0.00 0.00 4.08
644 682 0.308993 GCTTTGCTTCGCTGTGTCTT 59.691 50.000 0.00 0.00 0.00 3.01
648 686 1.224069 TGCTTCGCTGTGTCTTGCTC 61.224 55.000 0.00 0.00 0.00 4.26
658 696 0.037326 TGTCTTGCTCGAATCGCCTT 60.037 50.000 0.00 0.00 0.00 4.35
697 741 1.407656 AAGCTCCAACACGACCCTCA 61.408 55.000 0.00 0.00 0.00 3.86
730 774 3.432517 CTCGCATAGCATAGGGAGC 57.567 57.895 4.04 0.00 37.87 4.70
731 775 0.605083 CTCGCATAGCATAGGGAGCA 59.395 55.000 4.04 0.00 37.87 4.26
732 776 0.605083 TCGCATAGCATAGGGAGCAG 59.395 55.000 0.00 0.00 0.00 4.24
733 777 1.018226 CGCATAGCATAGGGAGCAGC 61.018 60.000 0.00 0.00 0.00 5.25
734 778 1.018226 GCATAGCATAGGGAGCAGCG 61.018 60.000 0.00 0.00 0.00 5.18
735 779 0.605083 CATAGCATAGGGAGCAGCGA 59.395 55.000 0.00 0.00 0.00 4.93
736 780 1.001293 CATAGCATAGGGAGCAGCGAA 59.999 52.381 0.00 0.00 0.00 4.70
737 781 0.676184 TAGCATAGGGAGCAGCGAAG 59.324 55.000 0.00 0.00 0.00 3.79
759 803 0.107459 GTGAAGCACCTCCCATCTCC 60.107 60.000 0.00 0.00 0.00 3.71
954 1023 5.702670 TCAAGATGAGACTGACAATTGAACC 59.297 40.000 13.59 1.48 30.20 3.62
1203 1284 3.583383 GCAATCTCCTGCGCAGTT 58.417 55.556 33.75 19.81 31.50 3.16
1235 1325 1.203994 CGACCAGGTAACAACTCCGAT 59.796 52.381 0.00 0.00 41.41 4.18
1252 1346 2.120232 CGATCCGTCTACGTACGTACT 58.880 52.381 23.60 12.43 41.27 2.73
1253 1347 2.535984 CGATCCGTCTACGTACGTACTT 59.464 50.000 23.60 16.37 41.27 2.24
1254 1348 3.729217 CGATCCGTCTACGTACGTACTTA 59.271 47.826 23.60 16.62 41.27 2.24
1307 1409 0.232303 CAAGTTCGTGTTCGTCTGCC 59.768 55.000 0.00 0.00 38.33 4.85
1479 1590 3.125146 CCATCGTCGGCCATTATATGTTG 59.875 47.826 2.24 0.00 0.00 3.33
1688 5898 1.141019 GAACGTAGGCAGCCGATCA 59.859 57.895 5.55 0.00 0.00 2.92
1728 5941 5.746245 GCACTGATGACTGACTAATGAGTAC 59.254 44.000 0.00 0.00 35.45 2.73
1777 6044 7.907214 ATTATACTCTGTTGTTGAACTGGAC 57.093 36.000 0.00 0.00 33.11 4.02
1877 6144 1.742761 AATTGTGGCCGTCTGATCTG 58.257 50.000 0.00 0.00 0.00 2.90
1878 6145 0.904649 ATTGTGGCCGTCTGATCTGA 59.095 50.000 0.00 0.00 0.00 3.27
1881 6148 0.749649 GTGGCCGTCTGATCTGATCT 59.250 55.000 17.82 0.00 0.00 2.75
1922 6189 5.736358 CGAGTAGTATTGACGAACAACCTAC 59.264 44.000 18.53 18.53 41.47 3.18
1984 6257 9.554395 TTTCTGTTATGTTAAGATGTGAACTGA 57.446 29.630 0.00 0.00 0.00 3.41
2007 6940 0.469070 AGCCTGTGATGATCTGAGCC 59.531 55.000 0.00 0.00 0.00 4.70
2008 6941 0.469070 GCCTGTGATGATCTGAGCCT 59.531 55.000 0.00 0.00 0.00 4.58
2009 6942 1.810794 GCCTGTGATGATCTGAGCCTG 60.811 57.143 0.00 0.00 0.00 4.85
2011 6944 2.697229 CCTGTGATGATCTGAGCCTGTA 59.303 50.000 0.00 0.00 0.00 2.74
2012 6945 3.133542 CCTGTGATGATCTGAGCCTGTAA 59.866 47.826 0.00 0.00 0.00 2.41
2015 6948 6.463472 CCTGTGATGATCTGAGCCTGTAATTA 60.463 42.308 0.00 0.00 0.00 1.40
2016 6949 6.519382 TGTGATGATCTGAGCCTGTAATTAG 58.481 40.000 0.00 0.00 0.00 1.73
2059 7000 6.757897 ATGGTTACCACTGTGTAAATGATG 57.242 37.500 6.10 0.00 35.80 3.07
2064 7005 4.191544 ACCACTGTGTAAATGATGGATCG 58.808 43.478 7.08 0.00 0.00 3.69
2069 7010 6.756542 CACTGTGTAAATGATGGATCGACTTA 59.243 38.462 0.00 0.00 0.00 2.24
2105 7046 4.434520 GTTTTAGCCTGTAATCTCGCTCT 58.565 43.478 0.00 0.00 32.76 4.09
2107 7048 1.036707 AGCCTGTAATCTCGCTCTCC 58.963 55.000 0.00 0.00 0.00 3.71
2109 7050 1.269517 GCCTGTAATCTCGCTCTCCTG 60.270 57.143 0.00 0.00 0.00 3.86
2188 7152 0.250640 CACATCAGCCCTCCTATGCC 60.251 60.000 0.00 0.00 0.00 4.40
2302 7297 9.288576 ACATGTATATTCTTCCATGTACCATTG 57.711 33.333 0.00 0.00 44.38 2.82
2306 7301 9.561069 GTATATTCTTCCATGTACCATTGAAGT 57.439 33.333 14.19 3.57 35.20 3.01
2350 7407 4.094887 GCACACATGTTCAAGTACCTATGG 59.905 45.833 0.00 0.00 0.00 2.74
2384 7441 3.489355 TCAGTTGATTGCACACATCCTT 58.511 40.909 0.00 0.00 0.00 3.36
2385 7442 3.890756 TCAGTTGATTGCACACATCCTTT 59.109 39.130 0.00 0.00 0.00 3.11
2386 7443 4.341806 TCAGTTGATTGCACACATCCTTTT 59.658 37.500 0.00 0.00 0.00 2.27
2387 7444 5.051816 CAGTTGATTGCACACATCCTTTTT 58.948 37.500 0.00 0.00 0.00 1.94
2413 7470 8.879342 TTTTTGTGAACGATTTGGATTGTATT 57.121 26.923 0.00 0.00 29.49 1.89
2414 7471 9.967346 TTTTTGTGAACGATTTGGATTGTATTA 57.033 25.926 0.00 0.00 29.49 0.98
2415 7472 9.967346 TTTTGTGAACGATTTGGATTGTATTAA 57.033 25.926 0.00 0.00 29.49 1.40
2417 7474 9.781834 TTGTGAACGATTTGGATTGTATTAATC 57.218 29.630 0.00 0.00 29.49 1.75
2418 7475 8.951243 TGTGAACGATTTGGATTGTATTAATCA 58.049 29.630 0.00 0.00 29.49 2.57
2419 7476 9.781834 GTGAACGATTTGGATTGTATTAATCAA 57.218 29.630 0.00 0.00 29.49 2.57
2421 7478 9.450807 GAACGATTTGGATTGTATTAATCAAGG 57.549 33.333 0.00 0.00 29.49 3.61
2422 7479 8.519799 ACGATTTGGATTGTATTAATCAAGGT 57.480 30.769 0.00 0.00 0.00 3.50
2423 7480 9.621629 ACGATTTGGATTGTATTAATCAAGGTA 57.378 29.630 0.00 0.00 0.00 3.08
2456 7513 3.457380 ACATCCTGCATCCTCACATTACT 59.543 43.478 0.00 0.00 0.00 2.24
2500 7884 3.063861 CACACGCTACACATGCATACATT 59.936 43.478 0.00 0.00 32.87 2.71
2505 7889 3.120546 GCTACACATGCATACATTAGCCG 60.121 47.826 0.00 0.00 35.47 5.52
2513 7897 3.270027 GCATACATTAGCCGCATGGATA 58.730 45.455 0.00 0.00 37.49 2.59
2519 7903 8.623903 CATACATTAGCCGCATGGATATATTTT 58.376 33.333 0.00 0.00 35.69 1.82
2560 7944 8.491152 TGTAATTTGACGCAATTTATTTGTTGG 58.509 29.630 8.86 0.00 37.65 3.77
2569 7953 6.091986 CGCAATTTATTTGTTGGCCTTGTATT 59.908 34.615 3.32 0.00 37.65 1.89
2571 7955 7.750014 GCAATTTATTTGTTGGCCTTGTATTTG 59.250 33.333 3.32 0.00 37.65 2.32
2572 7956 8.782144 CAATTTATTTGTTGGCCTTGTATTTGT 58.218 29.630 3.32 0.00 0.00 2.83
2575 7959 9.646427 TTTATTTGTTGGCCTTGTATTTGTATC 57.354 29.630 3.32 0.00 0.00 2.24
2576 7960 6.909550 TTTGTTGGCCTTGTATTTGTATCT 57.090 33.333 3.32 0.00 0.00 1.98
2577 7961 6.509418 TTGTTGGCCTTGTATTTGTATCTC 57.491 37.500 3.32 0.00 0.00 2.75
2578 7962 5.565509 TGTTGGCCTTGTATTTGTATCTCA 58.434 37.500 3.32 0.00 0.00 3.27
2579 7963 5.647658 TGTTGGCCTTGTATTTGTATCTCAG 59.352 40.000 3.32 0.00 0.00 3.35
2580 7964 5.435686 TGGCCTTGTATTTGTATCTCAGT 57.564 39.130 3.32 0.00 0.00 3.41
2584 7968 7.715249 TGGCCTTGTATTTGTATCTCAGTAATC 59.285 37.037 3.32 0.00 0.00 1.75
2597 7981 8.973378 GTATCTCAGTAATCAGATGTTTAGTGC 58.027 37.037 11.26 0.00 33.70 4.40
2602 7986 4.959596 AATCAGATGTTTAGTGCAGCAG 57.040 40.909 0.00 0.00 0.00 4.24
2613 7997 3.275088 GCAGCAGCAGCAGAATGT 58.725 55.556 4.63 0.00 45.49 2.71
2618 8002 3.252701 GCAGCAGCAGCAGAATGTATTAT 59.747 43.478 4.63 0.00 45.49 1.28
2621 8005 6.369005 CAGCAGCAGCAGAATGTATTATTAC 58.631 40.000 3.17 0.00 45.49 1.89
2622 8006 6.204301 CAGCAGCAGCAGAATGTATTATTACT 59.796 38.462 3.17 0.00 45.49 2.24
2624 8008 8.099537 AGCAGCAGCAGAATGTATTATTACTAT 58.900 33.333 3.17 0.00 45.49 2.12
2625 8009 9.371136 GCAGCAGCAGAATGTATTATTACTATA 57.629 33.333 0.00 0.00 41.58 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.001378 CCAAACCGAGAGCAACTTTGG 60.001 52.381 0.00 0.00 0.00 3.28
1 2 1.001378 CCCAAACCGAGAGCAACTTTG 60.001 52.381 0.00 0.00 0.00 2.77
2 3 1.318576 CCCAAACCGAGAGCAACTTT 58.681 50.000 0.00 0.00 0.00 2.66
3 4 0.537371 CCCCAAACCGAGAGCAACTT 60.537 55.000 0.00 0.00 0.00 2.66
4 5 1.073199 CCCCAAACCGAGAGCAACT 59.927 57.895 0.00 0.00 0.00 3.16
5 6 2.626780 GCCCCAAACCGAGAGCAAC 61.627 63.158 0.00 0.00 0.00 4.17
6 7 2.282180 GCCCCAAACCGAGAGCAA 60.282 61.111 0.00 0.00 0.00 3.91
7 8 4.344865 GGCCCCAAACCGAGAGCA 62.345 66.667 0.00 0.00 0.00 4.26
8 9 3.860930 TTGGCCCCAAACCGAGAGC 62.861 63.158 0.00 0.00 32.44 4.09
9 10 1.228429 TTTGGCCCCAAACCGAGAG 60.228 57.895 8.35 0.00 40.51 3.20
10 11 1.228429 CTTTGGCCCCAAACCGAGA 60.228 57.895 8.35 0.00 40.51 4.04
11 12 2.931068 GCTTTGGCCCCAAACCGAG 61.931 63.158 8.35 0.78 40.51 4.63
12 13 2.915137 GCTTTGGCCCCAAACCGA 60.915 61.111 8.35 0.00 40.51 4.69
13 14 4.356442 CGCTTTGGCCCCAAACCG 62.356 66.667 11.67 11.67 40.51 4.44
14 15 4.002506 CCGCTTTGGCCCCAAACC 62.003 66.667 8.35 2.08 40.51 3.27
15 16 2.915137 TCCGCTTTGGCCCCAAAC 60.915 61.111 8.35 5.60 40.51 2.93
16 17 2.915137 GTCCGCTTTGGCCCCAAA 60.915 61.111 11.65 11.65 42.77 3.28
17 18 4.211330 TGTCCGCTTTGGCCCCAA 62.211 61.111 0.00 0.00 37.80 4.12
18 19 4.659172 CTGTCCGCTTTGGCCCCA 62.659 66.667 0.00 0.00 37.80 4.96
19 20 3.860930 TTCTGTCCGCTTTGGCCCC 62.861 63.158 0.00 0.00 37.80 5.80
20 21 1.866853 CTTTCTGTCCGCTTTGGCCC 61.867 60.000 0.00 0.00 37.80 5.80
21 22 1.581447 CTTTCTGTCCGCTTTGGCC 59.419 57.895 0.00 0.00 37.80 5.36
22 23 1.081175 GCTTTCTGTCCGCTTTGGC 60.081 57.895 0.00 0.00 37.80 4.52
23 24 1.207593 CGCTTTCTGTCCGCTTTGG 59.792 57.895 0.00 0.00 40.09 3.28
24 25 1.207593 CCGCTTTCTGTCCGCTTTG 59.792 57.895 0.00 0.00 0.00 2.77
25 26 1.070786 TCCGCTTTCTGTCCGCTTT 59.929 52.632 0.00 0.00 0.00 3.51
26 27 1.668151 GTCCGCTTTCTGTCCGCTT 60.668 57.895 0.00 0.00 0.00 4.68
27 28 2.048127 GTCCGCTTTCTGTCCGCT 60.048 61.111 0.00 0.00 0.00 5.52
28 29 3.479269 CGTCCGCTTTCTGTCCGC 61.479 66.667 0.00 0.00 0.00 5.54
29 30 2.049433 ACGTCCGCTTTCTGTCCG 60.049 61.111 0.00 0.00 0.00 4.79
30 31 0.319641 AAGACGTCCGCTTTCTGTCC 60.320 55.000 13.01 0.00 0.00 4.02
31 32 1.061485 GAAGACGTCCGCTTTCTGTC 58.939 55.000 13.01 0.00 0.00 3.51
32 33 0.663568 CGAAGACGTCCGCTTTCTGT 60.664 55.000 13.01 0.00 34.56 3.41
33 34 2.062779 CGAAGACGTCCGCTTTCTG 58.937 57.895 13.01 2.86 34.56 3.02
34 35 4.554163 CGAAGACGTCCGCTTTCT 57.446 55.556 13.01 0.00 34.56 2.52
44 45 1.509370 CGACGAGGACACGAAGACG 60.509 63.158 0.00 0.00 45.75 4.18
45 46 0.452452 GACGACGAGGACACGAAGAC 60.452 60.000 0.00 0.00 37.03 3.01
46 47 0.602106 AGACGACGAGGACACGAAGA 60.602 55.000 0.00 0.00 37.03 2.87
47 48 0.452950 CAGACGACGAGGACACGAAG 60.453 60.000 0.00 0.00 37.03 3.79
48 49 1.162181 ACAGACGACGAGGACACGAA 61.162 55.000 0.00 0.00 37.03 3.85
49 50 1.563435 GACAGACGACGAGGACACGA 61.563 60.000 0.00 0.00 37.03 4.35
50 51 1.154450 GACAGACGACGAGGACACG 60.154 63.158 0.00 0.00 39.31 4.49
51 52 0.110147 CAGACAGACGACGAGGACAC 60.110 60.000 0.00 0.00 0.00 3.67
52 53 0.534427 ACAGACAGACGACGAGGACA 60.534 55.000 0.00 0.00 0.00 4.02
53 54 0.110147 CACAGACAGACGACGAGGAC 60.110 60.000 0.00 0.00 0.00 3.85
54 55 0.534427 ACACAGACAGACGACGAGGA 60.534 55.000 0.00 0.00 0.00 3.71
55 56 0.110147 GACACAGACAGACGACGAGG 60.110 60.000 0.00 0.00 0.00 4.63
56 57 0.110147 GGACACAGACAGACGACGAG 60.110 60.000 0.00 0.00 0.00 4.18
57 58 1.838568 CGGACACAGACAGACGACGA 61.839 60.000 0.00 0.00 0.00 4.20
58 59 1.440518 CGGACACAGACAGACGACG 60.441 63.158 0.00 0.00 0.00 5.12
59 60 0.385723 GACGGACACAGACAGACGAC 60.386 60.000 0.00 0.00 0.00 4.34
60 61 1.512996 GGACGGACACAGACAGACGA 61.513 60.000 0.00 0.00 0.00 4.20
61 62 1.081376 GGACGGACACAGACAGACG 60.081 63.158 0.00 0.00 0.00 4.18
62 63 0.241481 GAGGACGGACACAGACAGAC 59.759 60.000 0.00 0.00 0.00 3.51
63 64 1.235281 CGAGGACGGACACAGACAGA 61.235 60.000 0.00 0.00 35.72 3.41
64 65 1.210413 CGAGGACGGACACAGACAG 59.790 63.158 0.00 0.00 35.72 3.51
65 66 1.228033 TCGAGGACGGACACAGACA 60.228 57.895 0.00 0.00 40.21 3.41
66 67 1.209640 GTCGAGGACGGACACAGAC 59.790 63.158 0.00 0.00 40.21 3.51
67 68 1.970114 GGTCGAGGACGGACACAGA 60.970 63.158 0.00 0.00 40.21 3.41
68 69 2.567049 GGTCGAGGACGGACACAG 59.433 66.667 0.00 0.00 40.21 3.66
69 70 2.987547 GGGTCGAGGACGGACACA 60.988 66.667 0.00 0.00 40.21 3.72
70 71 3.756727 GGGGTCGAGGACGGACAC 61.757 72.222 0.00 0.00 40.21 3.67
71 72 4.289101 TGGGGTCGAGGACGGACA 62.289 66.667 0.00 0.00 40.21 4.02
72 73 3.756727 GTGGGGTCGAGGACGGAC 61.757 72.222 0.00 0.00 40.21 4.79
75 76 3.760035 CAGGTGGGGTCGAGGACG 61.760 72.222 0.00 0.00 41.26 4.79
76 77 4.083862 GCAGGTGGGGTCGAGGAC 62.084 72.222 0.00 0.00 0.00 3.85
79 80 4.394712 GTGGCAGGTGGGGTCGAG 62.395 72.222 0.00 0.00 0.00 4.04
80 81 4.954118 AGTGGCAGGTGGGGTCGA 62.954 66.667 0.00 0.00 0.00 4.20
81 82 4.394712 GAGTGGCAGGTGGGGTCG 62.395 72.222 0.00 0.00 0.00 4.79
82 83 2.930562 AGAGTGGCAGGTGGGGTC 60.931 66.667 0.00 0.00 0.00 4.46
83 84 2.930562 GAGAGTGGCAGGTGGGGT 60.931 66.667 0.00 0.00 0.00 4.95
84 85 2.190488 GAAGAGAGTGGCAGGTGGGG 62.190 65.000 0.00 0.00 0.00 4.96
85 86 1.197430 AGAAGAGAGTGGCAGGTGGG 61.197 60.000 0.00 0.00 0.00 4.61
86 87 0.689623 AAGAAGAGAGTGGCAGGTGG 59.310 55.000 0.00 0.00 0.00 4.61
87 88 2.557920 AAAGAAGAGAGTGGCAGGTG 57.442 50.000 0.00 0.00 0.00 4.00
88 89 3.217626 CAAAAAGAAGAGAGTGGCAGGT 58.782 45.455 0.00 0.00 0.00 4.00
89 90 3.217626 ACAAAAAGAAGAGAGTGGCAGG 58.782 45.455 0.00 0.00 0.00 4.85
90 91 4.214332 GGTACAAAAAGAAGAGAGTGGCAG 59.786 45.833 0.00 0.00 0.00 4.85
91 92 4.134563 GGTACAAAAAGAAGAGAGTGGCA 58.865 43.478 0.00 0.00 0.00 4.92
92 93 4.214332 CAGGTACAAAAAGAAGAGAGTGGC 59.786 45.833 0.00 0.00 0.00 5.01
93 94 4.757149 CCAGGTACAAAAAGAAGAGAGTGG 59.243 45.833 0.00 0.00 0.00 4.00
94 95 4.214332 GCCAGGTACAAAAAGAAGAGAGTG 59.786 45.833 0.00 0.00 0.00 3.51
95 96 4.390264 GCCAGGTACAAAAAGAAGAGAGT 58.610 43.478 0.00 0.00 0.00 3.24
96 97 3.753797 GGCCAGGTACAAAAAGAAGAGAG 59.246 47.826 0.00 0.00 0.00 3.20
97 98 3.497942 GGGCCAGGTACAAAAAGAAGAGA 60.498 47.826 4.39 0.00 0.00 3.10
98 99 2.820197 GGGCCAGGTACAAAAAGAAGAG 59.180 50.000 4.39 0.00 0.00 2.85
99 100 2.175931 TGGGCCAGGTACAAAAAGAAGA 59.824 45.455 0.00 0.00 0.00 2.87
100 101 2.593026 TGGGCCAGGTACAAAAAGAAG 58.407 47.619 0.00 0.00 0.00 2.85
101 102 2.757894 TGGGCCAGGTACAAAAAGAA 57.242 45.000 0.00 0.00 0.00 2.52
102 103 2.109128 TGATGGGCCAGGTACAAAAAGA 59.891 45.455 13.78 0.00 0.00 2.52
103 104 2.524306 TGATGGGCCAGGTACAAAAAG 58.476 47.619 13.78 0.00 0.00 2.27
104 105 2.685106 TGATGGGCCAGGTACAAAAA 57.315 45.000 13.78 0.00 0.00 1.94
105 106 2.917713 ATGATGGGCCAGGTACAAAA 57.082 45.000 13.78 0.00 0.00 2.44
106 107 2.420827 CGTATGATGGGCCAGGTACAAA 60.421 50.000 13.78 0.00 0.00 2.83
107 108 1.140052 CGTATGATGGGCCAGGTACAA 59.860 52.381 13.78 0.00 0.00 2.41
108 109 0.756294 CGTATGATGGGCCAGGTACA 59.244 55.000 13.78 10.04 0.00 2.90
109 110 0.034896 CCGTATGATGGGCCAGGTAC 59.965 60.000 13.78 13.28 0.00 3.34
110 111 0.105401 TCCGTATGATGGGCCAGGTA 60.105 55.000 13.78 0.22 0.00 3.08
111 112 1.383943 TCCGTATGATGGGCCAGGT 60.384 57.895 13.78 2.55 0.00 4.00
112 113 1.071471 GTCCGTATGATGGGCCAGG 59.929 63.158 13.78 6.64 0.00 4.45
113 114 0.180171 TTGTCCGTATGATGGGCCAG 59.820 55.000 13.78 0.00 0.00 4.85
114 115 0.621082 TTTGTCCGTATGATGGGCCA 59.379 50.000 9.61 9.61 0.00 5.36
115 116 1.757682 TTTTGTCCGTATGATGGGCC 58.242 50.000 0.00 0.00 0.00 5.80
116 117 2.293399 GGATTTTGTCCGTATGATGGGC 59.707 50.000 0.00 0.00 37.23 5.36
127 128 3.584834 CCATTTTGTCCGGATTTTGTCC 58.415 45.455 7.81 0.00 44.10 4.02
128 129 3.006430 ACCCATTTTGTCCGGATTTTGTC 59.994 43.478 7.81 0.00 0.00 3.18
129 130 2.969262 ACCCATTTTGTCCGGATTTTGT 59.031 40.909 7.81 0.00 0.00 2.83
130 131 3.676291 ACCCATTTTGTCCGGATTTTG 57.324 42.857 7.81 1.49 0.00 2.44
131 132 6.428295 TCTATACCCATTTTGTCCGGATTTT 58.572 36.000 7.81 0.00 0.00 1.82
132 133 6.008696 TCTATACCCATTTTGTCCGGATTT 57.991 37.500 7.81 0.00 0.00 2.17
133 134 5.640158 TCTATACCCATTTTGTCCGGATT 57.360 39.130 7.81 0.00 0.00 3.01
134 135 5.843019 ATCTATACCCATTTTGTCCGGAT 57.157 39.130 7.81 0.00 0.00 4.18
135 136 5.640158 AATCTATACCCATTTTGTCCGGA 57.360 39.130 0.00 0.00 0.00 5.14
136 137 6.430000 CCTAAATCTATACCCATTTTGTCCGG 59.570 42.308 0.00 0.00 0.00 5.14
137 138 6.430000 CCCTAAATCTATACCCATTTTGTCCG 59.570 42.308 0.00 0.00 0.00 4.79
138 139 7.295340 ACCCTAAATCTATACCCATTTTGTCC 58.705 38.462 0.00 0.00 0.00 4.02
139 140 9.503399 CTACCCTAAATCTATACCCATTTTGTC 57.497 37.037 0.00 0.00 0.00 3.18
140 141 7.942894 GCTACCCTAAATCTATACCCATTTTGT 59.057 37.037 0.00 0.00 0.00 2.83
141 142 7.942341 TGCTACCCTAAATCTATACCCATTTTG 59.058 37.037 0.00 0.00 0.00 2.44
142 143 8.052621 TGCTACCCTAAATCTATACCCATTTT 57.947 34.615 0.00 0.00 0.00 1.82
143 144 7.642094 TGCTACCCTAAATCTATACCCATTT 57.358 36.000 0.00 0.00 0.00 2.32
144 145 6.296489 GCTGCTACCCTAAATCTATACCCATT 60.296 42.308 0.00 0.00 0.00 3.16
145 146 5.189934 GCTGCTACCCTAAATCTATACCCAT 59.810 44.000 0.00 0.00 0.00 4.00
146 147 4.530946 GCTGCTACCCTAAATCTATACCCA 59.469 45.833 0.00 0.00 0.00 4.51
147 148 4.381718 CGCTGCTACCCTAAATCTATACCC 60.382 50.000 0.00 0.00 0.00 3.69
148 149 4.220163 ACGCTGCTACCCTAAATCTATACC 59.780 45.833 0.00 0.00 0.00 2.73
149 150 5.388408 ACGCTGCTACCCTAAATCTATAC 57.612 43.478 0.00 0.00 0.00 1.47
150 151 5.279306 CCAACGCTGCTACCCTAAATCTATA 60.279 44.000 0.00 0.00 0.00 1.31
151 152 4.503296 CCAACGCTGCTACCCTAAATCTAT 60.503 45.833 0.00 0.00 0.00 1.98
152 153 3.181469 CCAACGCTGCTACCCTAAATCTA 60.181 47.826 0.00 0.00 0.00 1.98
153 154 2.420129 CCAACGCTGCTACCCTAAATCT 60.420 50.000 0.00 0.00 0.00 2.40
154 155 1.940613 CCAACGCTGCTACCCTAAATC 59.059 52.381 0.00 0.00 0.00 2.17
155 156 1.408266 CCCAACGCTGCTACCCTAAAT 60.408 52.381 0.00 0.00 0.00 1.40
156 157 0.035820 CCCAACGCTGCTACCCTAAA 60.036 55.000 0.00 0.00 0.00 1.85
157 158 1.600107 CCCAACGCTGCTACCCTAA 59.400 57.895 0.00 0.00 0.00 2.69
158 159 3.026431 GCCCAACGCTGCTACCCTA 62.026 63.158 0.00 0.00 0.00 3.53
159 160 4.410400 GCCCAACGCTGCTACCCT 62.410 66.667 0.00 0.00 0.00 4.34
170 171 1.008538 CAAACTCACTGCGCCCAAC 60.009 57.895 4.18 0.00 0.00 3.77
171 172 1.453015 ACAAACTCACTGCGCCCAA 60.453 52.632 4.18 0.00 0.00 4.12
172 173 2.186160 CACAAACTCACTGCGCCCA 61.186 57.895 4.18 0.00 0.00 5.36
173 174 2.639286 CACAAACTCACTGCGCCC 59.361 61.111 4.18 0.00 0.00 6.13
174 175 2.050985 GCACAAACTCACTGCGCC 60.051 61.111 4.18 0.00 0.00 6.53
175 176 2.425773 CGCACAAACTCACTGCGC 60.426 61.111 0.00 0.00 46.34 6.09
177 178 2.050985 GCCGCACAAACTCACTGC 60.051 61.111 0.00 0.00 0.00 4.40
178 179 1.845809 GAGGCCGCACAAACTCACTG 61.846 60.000 0.00 0.00 0.00 3.66
179 180 1.598130 GAGGCCGCACAAACTCACT 60.598 57.895 0.00 0.00 0.00 3.41
180 181 1.598130 AGAGGCCGCACAAACTCAC 60.598 57.895 9.88 0.00 32.52 3.51
181 182 1.597854 CAGAGGCCGCACAAACTCA 60.598 57.895 9.88 0.00 32.52 3.41
182 183 1.569479 GACAGAGGCCGCACAAACTC 61.569 60.000 9.88 0.00 0.00 3.01
183 184 1.598130 GACAGAGGCCGCACAAACT 60.598 57.895 9.88 0.00 0.00 2.66
184 185 2.617274 GGACAGAGGCCGCACAAAC 61.617 63.158 9.88 0.00 0.00 2.93
185 186 2.281484 GGACAGAGGCCGCACAAA 60.281 61.111 9.88 0.00 0.00 2.83
186 187 4.680237 CGGACAGAGGCCGCACAA 62.680 66.667 9.88 0.00 42.55 3.33
194 195 1.566018 GAACAAACGCCGGACAGAGG 61.566 60.000 5.05 0.00 0.00 3.69
195 196 0.600255 AGAACAAACGCCGGACAGAG 60.600 55.000 5.05 0.00 0.00 3.35
196 197 0.599204 GAGAACAAACGCCGGACAGA 60.599 55.000 5.05 0.00 0.00 3.41
197 198 1.566018 GGAGAACAAACGCCGGACAG 61.566 60.000 5.05 0.00 0.00 3.51
198 199 1.595929 GGAGAACAAACGCCGGACA 60.596 57.895 5.05 0.00 0.00 4.02
199 200 2.322830 GGGAGAACAAACGCCGGAC 61.323 63.158 5.05 0.00 0.00 4.79
200 201 1.186917 TAGGGAGAACAAACGCCGGA 61.187 55.000 5.05 0.00 0.00 5.14
201 202 0.107848 ATAGGGAGAACAAACGCCGG 60.108 55.000 0.00 0.00 0.00 6.13
202 203 1.734163 AATAGGGAGAACAAACGCCG 58.266 50.000 0.00 0.00 0.00 6.46
203 204 4.514781 AAAAATAGGGAGAACAAACGCC 57.485 40.909 0.00 0.00 0.00 5.68
204 205 5.182570 AGGTAAAAATAGGGAGAACAAACGC 59.817 40.000 0.00 0.00 0.00 4.84
205 206 6.428771 TGAGGTAAAAATAGGGAGAACAAACG 59.571 38.462 0.00 0.00 0.00 3.60
206 207 7.754851 TGAGGTAAAAATAGGGAGAACAAAC 57.245 36.000 0.00 0.00 0.00 2.93
207 208 9.457436 GTATGAGGTAAAAATAGGGAGAACAAA 57.543 33.333 0.00 0.00 0.00 2.83
208 209 7.767198 CGTATGAGGTAAAAATAGGGAGAACAA 59.233 37.037 0.00 0.00 0.00 2.83
209 210 7.270047 CGTATGAGGTAAAAATAGGGAGAACA 58.730 38.462 0.00 0.00 0.00 3.18
210 211 6.704937 CCGTATGAGGTAAAAATAGGGAGAAC 59.295 42.308 0.00 0.00 34.98 3.01
211 212 6.612456 TCCGTATGAGGTAAAAATAGGGAGAA 59.388 38.462 0.00 0.00 36.44 2.87
212 213 6.041296 GTCCGTATGAGGTAAAAATAGGGAGA 59.959 42.308 4.12 0.00 39.97 3.71
213 214 6.183360 TGTCCGTATGAGGTAAAAATAGGGAG 60.183 42.308 4.12 0.00 39.97 4.30
214 215 5.662208 TGTCCGTATGAGGTAAAAATAGGGA 59.338 40.000 0.00 0.00 38.09 4.20
215 216 5.920903 TGTCCGTATGAGGTAAAAATAGGG 58.079 41.667 0.00 0.00 34.55 3.53
216 217 7.852971 TTTGTCCGTATGAGGTAAAAATAGG 57.147 36.000 0.00 0.00 0.00 2.57
217 218 9.931210 GATTTTGTCCGTATGAGGTAAAAATAG 57.069 33.333 12.07 0.00 37.42 1.73
218 219 8.895737 GGATTTTGTCCGTATGAGGTAAAAATA 58.104 33.333 12.07 0.00 37.42 1.40
219 220 7.768240 GGATTTTGTCCGTATGAGGTAAAAAT 58.232 34.615 12.00 12.00 38.63 1.82
220 221 7.148355 GGATTTTGTCCGTATGAGGTAAAAA 57.852 36.000 0.00 0.00 37.23 1.94
221 222 6.746745 GGATTTTGTCCGTATGAGGTAAAA 57.253 37.500 0.00 0.00 37.23 1.52
234 235 2.030274 CCAGTTTGTCCGGATTTTGTCC 60.030 50.000 7.81 0.00 44.10 4.02
235 236 2.030274 CCCAGTTTGTCCGGATTTTGTC 60.030 50.000 7.81 0.00 0.00 3.18
236 237 1.960689 CCCAGTTTGTCCGGATTTTGT 59.039 47.619 7.81 0.00 0.00 2.83
237 238 1.960689 ACCCAGTTTGTCCGGATTTTG 59.039 47.619 7.81 2.34 0.00 2.44
238 239 2.375014 ACCCAGTTTGTCCGGATTTT 57.625 45.000 7.81 0.00 0.00 1.82
239 240 3.732048 ATACCCAGTTTGTCCGGATTT 57.268 42.857 7.81 0.00 0.00 2.17
240 241 4.035112 TCTATACCCAGTTTGTCCGGATT 58.965 43.478 7.81 0.00 0.00 3.01
241 242 3.649843 TCTATACCCAGTTTGTCCGGAT 58.350 45.455 7.81 0.00 0.00 4.18
242 243 3.104519 TCTATACCCAGTTTGTCCGGA 57.895 47.619 0.00 0.00 0.00 5.14
243 244 4.417426 AATCTATACCCAGTTTGTCCGG 57.583 45.455 0.00 0.00 0.00 5.14
244 245 6.482308 CCTTAAATCTATACCCAGTTTGTCCG 59.518 42.308 0.00 0.00 0.00 4.79
245 246 7.344134 ACCTTAAATCTATACCCAGTTTGTCC 58.656 38.462 0.00 0.00 0.00 4.02
246 247 7.224167 CGACCTTAAATCTATACCCAGTTTGTC 59.776 40.741 0.00 0.00 0.00 3.18
247 248 7.046033 CGACCTTAAATCTATACCCAGTTTGT 58.954 38.462 0.00 0.00 0.00 2.83
248 249 7.011109 CACGACCTTAAATCTATACCCAGTTTG 59.989 40.741 0.00 0.00 0.00 2.93
249 250 7.046033 CACGACCTTAAATCTATACCCAGTTT 58.954 38.462 0.00 0.00 0.00 2.66
250 251 6.579865 CACGACCTTAAATCTATACCCAGTT 58.420 40.000 0.00 0.00 0.00 3.16
251 252 5.452917 GCACGACCTTAAATCTATACCCAGT 60.453 44.000 0.00 0.00 0.00 4.00
252 253 4.989168 GCACGACCTTAAATCTATACCCAG 59.011 45.833 0.00 0.00 0.00 4.45
253 254 4.500205 CGCACGACCTTAAATCTATACCCA 60.500 45.833 0.00 0.00 0.00 4.51
254 255 3.985925 CGCACGACCTTAAATCTATACCC 59.014 47.826 0.00 0.00 0.00 3.69
255 256 3.985925 CCGCACGACCTTAAATCTATACC 59.014 47.826 0.00 0.00 0.00 2.73
256 257 4.443394 CACCGCACGACCTTAAATCTATAC 59.557 45.833 0.00 0.00 0.00 1.47
257 258 4.500205 CCACCGCACGACCTTAAATCTATA 60.500 45.833 0.00 0.00 0.00 1.31
258 259 3.454375 CACCGCACGACCTTAAATCTAT 58.546 45.455 0.00 0.00 0.00 1.98
259 260 2.417651 CCACCGCACGACCTTAAATCTA 60.418 50.000 0.00 0.00 0.00 1.98
260 261 1.674817 CCACCGCACGACCTTAAATCT 60.675 52.381 0.00 0.00 0.00 2.40
261 262 0.725117 CCACCGCACGACCTTAAATC 59.275 55.000 0.00 0.00 0.00 2.17
262 263 0.322322 TCCACCGCACGACCTTAAAT 59.678 50.000 0.00 0.00 0.00 1.40
263 264 0.320073 CTCCACCGCACGACCTTAAA 60.320 55.000 0.00 0.00 0.00 1.52
264 265 1.290955 CTCCACCGCACGACCTTAA 59.709 57.895 0.00 0.00 0.00 1.85
265 266 1.466025 AACTCCACCGCACGACCTTA 61.466 55.000 0.00 0.00 0.00 2.69
266 267 2.803817 AACTCCACCGCACGACCTT 61.804 57.895 0.00 0.00 0.00 3.50
267 268 3.231736 AACTCCACCGCACGACCT 61.232 61.111 0.00 0.00 0.00 3.85
268 269 3.041940 CAACTCCACCGCACGACC 61.042 66.667 0.00 0.00 0.00 4.79
269 270 3.041940 CCAACTCCACCGCACGAC 61.042 66.667 0.00 0.00 0.00 4.34
270 271 4.980805 GCCAACTCCACCGCACGA 62.981 66.667 0.00 0.00 0.00 4.35
272 273 2.741486 TTAGGCCAACTCCACCGCAC 62.741 60.000 5.01 0.00 0.00 5.34
273 274 2.463589 CTTAGGCCAACTCCACCGCA 62.464 60.000 5.01 0.00 0.00 5.69
274 275 1.745489 CTTAGGCCAACTCCACCGC 60.745 63.158 5.01 0.00 0.00 5.68
275 276 0.323629 TTCTTAGGCCAACTCCACCG 59.676 55.000 5.01 0.00 0.00 4.94
276 277 2.579410 TTTCTTAGGCCAACTCCACC 57.421 50.000 5.01 0.00 0.00 4.61
277 278 3.751518 TCTTTTCTTAGGCCAACTCCAC 58.248 45.455 5.01 0.00 0.00 4.02
278 279 3.394606 ACTCTTTTCTTAGGCCAACTCCA 59.605 43.478 5.01 0.00 0.00 3.86
279 280 3.753797 CACTCTTTTCTTAGGCCAACTCC 59.246 47.826 5.01 0.00 0.00 3.85
280 281 3.753797 CCACTCTTTTCTTAGGCCAACTC 59.246 47.826 5.01 0.00 0.00 3.01
281 282 3.394606 TCCACTCTTTTCTTAGGCCAACT 59.605 43.478 5.01 0.00 0.00 3.16
282 283 3.751518 TCCACTCTTTTCTTAGGCCAAC 58.248 45.455 5.01 0.00 0.00 3.77
283 284 3.650942 TCTCCACTCTTTTCTTAGGCCAA 59.349 43.478 5.01 0.00 0.00 4.52
284 285 3.248024 TCTCCACTCTTTTCTTAGGCCA 58.752 45.455 5.01 0.00 0.00 5.36
285 286 3.515901 TCTCTCCACTCTTTTCTTAGGCC 59.484 47.826 0.00 0.00 0.00 5.19
286 287 4.464597 TCTCTCTCCACTCTTTTCTTAGGC 59.535 45.833 0.00 0.00 0.00 3.93
287 288 6.597832 TTCTCTCTCCACTCTTTTCTTAGG 57.402 41.667 0.00 0.00 0.00 2.69
288 289 7.891561 TCTTTCTCTCTCCACTCTTTTCTTAG 58.108 38.462 0.00 0.00 0.00 2.18
298 299 2.765699 GCATCCTCTTTCTCTCTCCACT 59.234 50.000 0.00 0.00 0.00 4.00
310 311 4.279420 GTCAAGTTTTCAAGGCATCCTCTT 59.721 41.667 0.00 0.00 30.89 2.85
332 339 1.003839 ATGTGCGATCCAACCGTGT 60.004 52.632 0.00 0.00 0.00 4.49
333 340 1.018752 TCATGTGCGATCCAACCGTG 61.019 55.000 0.00 0.00 0.00 4.94
334 341 0.107703 ATCATGTGCGATCCAACCGT 60.108 50.000 0.00 0.00 0.00 4.83
335 342 0.305617 CATCATGTGCGATCCAACCG 59.694 55.000 0.00 0.00 0.00 4.44
336 343 0.029834 GCATCATGTGCGATCCAACC 59.970 55.000 4.83 0.00 45.23 3.77
356 363 7.785033 AGTTTTTCCAAGACAAAAGTGATGAT 58.215 30.769 0.00 0.00 0.00 2.45
375 382 0.180171 GCCCAACCCTGCAAGTTTTT 59.820 50.000 0.00 0.00 0.00 1.94
384 391 0.827089 TCATGTGTTGCCCAACCCTG 60.827 55.000 8.53 4.17 40.46 4.45
437 444 3.855689 AAAAGTTGATGGCGAAGATGG 57.144 42.857 0.00 0.00 0.00 3.51
473 483 6.688813 GCTAGAATGGAAGACAAAATTTAGCG 59.311 38.462 0.00 0.00 0.00 4.26
477 487 7.816031 CACATGCTAGAATGGAAGACAAAATTT 59.184 33.333 15.46 0.00 31.46 1.82
644 682 1.009078 CAATCAAGGCGATTCGAGCA 58.991 50.000 10.88 0.00 42.70 4.26
648 686 1.064060 GGAACCAATCAAGGCGATTCG 59.936 52.381 0.62 0.62 42.70 3.34
658 696 5.838521 AGCTTTTTAAAGAGGGAACCAATCA 59.161 36.000 7.77 0.00 43.79 2.57
662 700 4.149598 GGAGCTTTTTAAAGAGGGAACCA 58.850 43.478 7.77 0.00 43.79 3.67
665 703 5.068591 GTGTTGGAGCTTTTTAAAGAGGGAA 59.931 40.000 7.77 0.00 38.28 3.97
730 774 1.206072 GTGCTTCACTGCTTCGCTG 59.794 57.895 0.00 0.00 0.00 5.18
731 775 1.963338 GGTGCTTCACTGCTTCGCT 60.963 57.895 0.00 0.00 34.40 4.93
732 776 1.905922 GAGGTGCTTCACTGCTTCGC 61.906 60.000 0.00 0.00 34.40 4.70
733 777 1.294659 GGAGGTGCTTCACTGCTTCG 61.295 60.000 0.00 0.00 34.40 3.79
734 778 0.957888 GGGAGGTGCTTCACTGCTTC 60.958 60.000 0.00 0.00 34.40 3.86
735 779 1.073897 GGGAGGTGCTTCACTGCTT 59.926 57.895 0.00 0.00 34.40 3.91
736 780 1.495579 ATGGGAGGTGCTTCACTGCT 61.496 55.000 0.00 0.00 34.40 4.24
737 781 1.001641 ATGGGAGGTGCTTCACTGC 60.002 57.895 0.00 0.00 34.40 4.40
738 782 0.617413 AGATGGGAGGTGCTTCACTG 59.383 55.000 0.00 0.00 34.40 3.66
739 783 0.908198 GAGATGGGAGGTGCTTCACT 59.092 55.000 0.00 0.00 34.40 3.41
740 784 0.107459 GGAGATGGGAGGTGCTTCAC 60.107 60.000 0.00 0.00 0.00 3.18
741 785 1.617018 CGGAGATGGGAGGTGCTTCA 61.617 60.000 0.00 0.00 0.00 3.02
742 786 1.144936 CGGAGATGGGAGGTGCTTC 59.855 63.158 0.00 0.00 0.00 3.86
743 787 1.306141 TCGGAGATGGGAGGTGCTT 60.306 57.895 0.00 0.00 0.00 3.91
744 788 2.060980 GTCGGAGATGGGAGGTGCT 61.061 63.158 0.00 0.00 40.67 4.40
745 789 2.501610 GTCGGAGATGGGAGGTGC 59.498 66.667 0.00 0.00 40.67 5.01
746 790 1.680522 CTGGTCGGAGATGGGAGGTG 61.681 65.000 0.00 0.00 40.67 4.00
747 791 1.381872 CTGGTCGGAGATGGGAGGT 60.382 63.158 0.00 0.00 40.67 3.85
748 792 2.801631 GCTGGTCGGAGATGGGAGG 61.802 68.421 0.00 0.00 40.67 4.30
759 803 3.553437 AACTCACCGTCGCTGGTCG 62.553 63.158 0.00 0.00 41.38 4.79
954 1023 3.223423 AGACACAAGAGCACACTATCG 57.777 47.619 0.00 0.00 0.00 2.92
1252 1346 2.024846 TCCGGCATCCAAGGGAAATTAA 60.025 45.455 0.00 0.00 34.34 1.40
1253 1347 1.566703 TCCGGCATCCAAGGGAAATTA 59.433 47.619 0.00 0.00 34.34 1.40
1254 1348 0.334676 TCCGGCATCCAAGGGAAATT 59.665 50.000 0.00 0.00 34.34 1.82
1349 1451 0.735978 CAAGTACACCAGCGCGATGA 60.736 55.000 28.29 1.72 0.00 2.92
1688 5898 3.008375 TCAGTGCCTCAGCTCAACTAATT 59.992 43.478 0.00 0.00 40.80 1.40
1769 6036 7.604545 GCTAATTAAGGGATATCTGTCCAGTTC 59.395 40.741 2.05 0.00 40.17 3.01
1809 6076 6.018507 CCCCACATTACGCAAATTACTAGTAC 60.019 42.308 0.91 0.00 0.00 2.73
1817 6084 0.172352 CGCCCCACATTACGCAAATT 59.828 50.000 0.00 0.00 0.00 1.82
1820 6087 0.107606 ATACGCCCCACATTACGCAA 60.108 50.000 0.00 0.00 0.00 4.85
1821 6088 0.751452 TATACGCCCCACATTACGCA 59.249 50.000 0.00 0.00 0.00 5.24
1822 6089 2.088950 ATATACGCCCCACATTACGC 57.911 50.000 0.00 0.00 0.00 4.42
1823 6090 9.188588 CTAATTATATATACGCCCCACATTACG 57.811 37.037 0.00 0.00 0.00 3.18
1824 6091 8.985805 GCTAATTATATATACGCCCCACATTAC 58.014 37.037 0.00 0.00 0.00 1.89
1825 6092 8.152246 GGCTAATTATATATACGCCCCACATTA 58.848 37.037 9.04 1.88 0.00 1.90
1826 6093 6.996282 GGCTAATTATATATACGCCCCACATT 59.004 38.462 9.04 1.02 0.00 2.71
1827 6094 6.329197 AGGCTAATTATATATACGCCCCACAT 59.671 38.462 13.70 0.00 36.76 3.21
1828 6095 5.664006 AGGCTAATTATATATACGCCCCACA 59.336 40.000 13.70 0.00 36.76 4.17
1877 6144 7.915508 ACTCGATATTGTATCTCGATCAGATC 58.084 38.462 9.91 0.00 41.39 2.75
1878 6145 7.857734 ACTCGATATTGTATCTCGATCAGAT 57.142 36.000 10.99 10.99 44.73 2.90
1881 6148 9.819267 ATACTACTCGATATTGTATCTCGATCA 57.181 33.333 0.00 0.00 40.29 2.92
1901 6168 5.921784 CGTAGGTTGTTCGTCAATACTAC 57.078 43.478 18.20 18.20 41.03 2.73
1922 6189 1.959042 ATGCTACATCAAAGGCTCCG 58.041 50.000 0.00 0.00 0.00 4.63
1984 6257 1.827344 TCAGATCATCACAGGCTCGTT 59.173 47.619 0.00 0.00 0.00 3.85
2008 6941 9.214957 CCAAACTGAAGTACACATCTAATTACA 57.785 33.333 0.00 0.00 0.00 2.41
2009 6942 9.216117 ACCAAACTGAAGTACACATCTAATTAC 57.784 33.333 0.00 0.00 0.00 1.89
2011 6944 9.959721 ATACCAAACTGAAGTACACATCTAATT 57.040 29.630 0.00 0.00 0.00 1.40
2012 6945 9.383519 CATACCAAACTGAAGTACACATCTAAT 57.616 33.333 0.00 0.00 0.00 1.73
2015 6948 6.173339 CCATACCAAACTGAAGTACACATCT 58.827 40.000 0.00 0.00 0.00 2.90
2016 6949 5.938125 ACCATACCAAACTGAAGTACACATC 59.062 40.000 0.00 0.00 0.00 3.06
2059 7000 9.601217 AACCAGCATATATTATTAAGTCGATCC 57.399 33.333 0.00 0.00 0.00 3.36
2069 7010 8.940397 ACAGGCTAAAACCAGCATATATTATT 57.060 30.769 0.00 0.00 43.67 1.40
2160 7119 1.213678 AGGGCTGATGTGTACATGCAT 59.786 47.619 0.00 0.00 36.57 3.96
2161 7120 0.620030 AGGGCTGATGTGTACATGCA 59.380 50.000 0.00 0.00 36.57 3.96
2162 7121 1.303309 GAGGGCTGATGTGTACATGC 58.697 55.000 0.00 0.79 36.57 4.06
2163 7122 1.487976 AGGAGGGCTGATGTGTACATG 59.512 52.381 0.00 0.00 36.57 3.21
2188 7152 1.335810 TGCTCTTTGTGCAGCAGAAAG 59.664 47.619 30.46 30.46 43.23 2.62
2388 7445 8.879342 AATACAATCCAAATCGTTCACAAAAA 57.121 26.923 0.00 0.00 0.00 1.94
2389 7446 9.967346 TTAATACAATCCAAATCGTTCACAAAA 57.033 25.926 0.00 0.00 0.00 2.44
2391 7448 9.781834 GATTAATACAATCCAAATCGTTCACAA 57.218 29.630 0.00 0.00 0.00 3.33
2392 7449 8.951243 TGATTAATACAATCCAAATCGTTCACA 58.049 29.630 0.00 0.00 30.79 3.58
2393 7450 9.781834 TTGATTAATACAATCCAAATCGTTCAC 57.218 29.630 0.00 0.00 30.79 3.18
2395 7452 9.450807 CCTTGATTAATACAATCCAAATCGTTC 57.549 33.333 0.00 0.00 30.79 3.95
2396 7453 8.966868 ACCTTGATTAATACAATCCAAATCGTT 58.033 29.630 0.00 0.00 30.79 3.85
2397 7454 8.519799 ACCTTGATTAATACAATCCAAATCGT 57.480 30.769 0.00 0.00 30.79 3.73
2402 7459 9.967451 TCAACTACCTTGATTAATACAATCCAA 57.033 29.630 0.00 0.00 33.65 3.53
2431 7488 0.737219 GTGAGGATGCAGGATGTTGC 59.263 55.000 0.00 0.00 44.33 4.17
2432 7489 2.118313 TGTGAGGATGCAGGATGTTG 57.882 50.000 0.00 0.00 39.31 3.33
2433 7490 3.377253 AATGTGAGGATGCAGGATGTT 57.623 42.857 0.00 0.00 39.31 2.71
2434 7491 3.457380 AGTAATGTGAGGATGCAGGATGT 59.543 43.478 0.00 0.00 39.31 3.06
2435 7492 4.082665 AGTAATGTGAGGATGCAGGATG 57.917 45.455 0.00 0.00 40.87 3.51
2436 7493 5.455326 GGTTAGTAATGTGAGGATGCAGGAT 60.455 44.000 0.00 0.00 0.00 3.24
2437 7494 4.141711 GGTTAGTAATGTGAGGATGCAGGA 60.142 45.833 0.00 0.00 0.00 3.86
2438 7495 4.130118 GGTTAGTAATGTGAGGATGCAGG 58.870 47.826 0.00 0.00 0.00 4.85
2439 7496 4.769688 TGGTTAGTAATGTGAGGATGCAG 58.230 43.478 0.00 0.00 0.00 4.41
2440 7497 4.835284 TGGTTAGTAATGTGAGGATGCA 57.165 40.909 0.00 0.00 0.00 3.96
2441 7498 4.335594 GGTTGGTTAGTAATGTGAGGATGC 59.664 45.833 0.00 0.00 0.00 3.91
2442 7499 5.496556 TGGTTGGTTAGTAATGTGAGGATG 58.503 41.667 0.00 0.00 0.00 3.51
2456 7513 4.646945 TGCTTTTGTCATCTTGGTTGGTTA 59.353 37.500 0.00 0.00 0.00 2.85
2500 7884 6.658816 ACATGAAAAATATATCCATGCGGCTA 59.341 34.615 0.00 0.00 38.43 3.93
2505 7889 7.230849 TGGGACATGAAAAATATATCCATGC 57.769 36.000 0.00 8.63 38.43 4.06
2519 7903 7.148323 CGTCAAATTACATAGTTGGGACATGAA 60.148 37.037 0.00 0.00 39.30 2.57
2535 7919 7.477112 GCCAACAAATAAATTGCGTCAAATTAC 59.523 33.333 3.35 0.00 43.13 1.89
2560 7944 8.662781 TGATTACTGAGATACAAATACAAGGC 57.337 34.615 0.00 0.00 0.00 4.35
2571 7955 8.973378 GCACTAAACATCTGATTACTGAGATAC 58.027 37.037 0.00 0.00 0.00 2.24
2572 7956 8.695456 TGCACTAAACATCTGATTACTGAGATA 58.305 33.333 0.00 0.00 0.00 1.98
2574 7958 6.935167 TGCACTAAACATCTGATTACTGAGA 58.065 36.000 0.00 0.00 0.00 3.27
2575 7959 6.238049 GCTGCACTAAACATCTGATTACTGAG 60.238 42.308 0.00 0.00 0.00 3.35
2576 7960 5.582269 GCTGCACTAAACATCTGATTACTGA 59.418 40.000 0.00 0.00 0.00 3.41
2577 7961 5.352293 TGCTGCACTAAACATCTGATTACTG 59.648 40.000 0.00 0.00 0.00 2.74
2578 7962 5.491070 TGCTGCACTAAACATCTGATTACT 58.509 37.500 0.00 0.00 0.00 2.24
2579 7963 5.728898 GCTGCTGCACTAAACATCTGATTAC 60.729 44.000 11.11 0.00 39.41 1.89
2580 7964 4.333649 GCTGCTGCACTAAACATCTGATTA 59.666 41.667 11.11 0.00 39.41 1.75
2584 7968 1.808343 TGCTGCTGCACTAAACATCTG 59.192 47.619 14.93 0.00 45.31 2.90
2597 7981 5.434352 AATAATACATTCTGCTGCTGCTG 57.566 39.130 17.00 15.94 40.48 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.