Multiple sequence alignment - TraesCS5A01G035400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G035400 chr5A 100.000 2517 0 0 1 2517 32747537 32750053 0.000000e+00 4649.0
1 TraesCS5A01G035400 chr5A 88.471 399 38 6 1814 2210 32231148 32231540 2.270000e-130 475.0
2 TraesCS5A01G035400 chr5A 89.899 297 23 4 2223 2514 32759356 32759650 2.360000e-100 375.0
3 TraesCS5A01G035400 chr5A 82.857 315 30 17 1762 2063 30102818 30103121 6.910000e-66 261.0
4 TraesCS5A01G035400 chr5A 80.165 363 25 20 1736 2059 32758631 32758985 7.000000e-56 228.0
5 TraesCS5A01G035400 chr5A 82.470 251 21 11 1815 2060 32772189 32772421 5.490000e-47 198.0
6 TraesCS5A01G035400 chr5A 86.093 151 19 2 337 485 32747767 32747917 7.210000e-36 161.0
7 TraesCS5A01G035400 chr5A 86.093 151 19 2 231 381 32747873 32748021 7.210000e-36 161.0
8 TraesCS5A01G035400 chr5A 85.827 127 14 3 1814 1938 32231005 32231129 5.650000e-27 132.0
9 TraesCS5A01G035400 chr5A 83.065 124 21 0 1273 1396 536971005 536971128 2.050000e-21 113.0
10 TraesCS5A01G035400 chr5A 86.667 105 7 5 1226 1330 32752890 32752987 2.650000e-20 110.0
11 TraesCS5A01G035400 chr5B 82.222 810 67 34 1733 2514 38767955 38768715 5.910000e-176 627.0
12 TraesCS5A01G035400 chr5B 84.859 568 66 15 1010 1571 38045810 38045257 2.830000e-154 555.0
13 TraesCS5A01G035400 chr5B 84.454 476 55 13 123 585 38046719 38046250 3.820000e-123 451.0
14 TraesCS5A01G035400 chr5B 83.871 372 32 15 1710 2072 38045156 38044804 1.870000e-86 329.0
15 TraesCS5A01G035400 chr5B 83.014 365 36 11 1016 1371 38034621 38034274 8.750000e-80 307.0
16 TraesCS5A01G035400 chr5B 85.570 298 34 6 2223 2514 38828137 38828431 1.130000e-78 303.0
17 TraesCS5A01G035400 chr5B 85.570 298 27 6 2223 2517 38012416 38012132 5.260000e-77 298.0
18 TraesCS5A01G035400 chr5B 81.793 368 53 10 220 575 38038104 38037739 1.890000e-76 296.0
19 TraesCS5A01G035400 chr5B 83.737 289 28 12 1821 2101 37978120 37977843 3.210000e-64 255.0
20 TraesCS5A01G035400 chr5B 85.200 250 19 11 1846 2087 38798221 38798460 9.000000e-60 241.0
21 TraesCS5A01G035400 chr5B 85.222 203 27 3 231 431 38046560 38046359 3.280000e-49 206.0
22 TraesCS5A01G035400 chr5B 89.032 155 16 1 2225 2379 38798487 38798640 9.190000e-45 191.0
23 TraesCS5A01G035400 chr5B 79.848 263 33 10 231 490 38038232 38037987 9.260000e-40 174.0
24 TraesCS5A01G035400 chr5B 88.235 102 12 0 1296 1397 36398693 36398794 3.400000e-24 122.0
25 TraesCS5A01G035400 chr5B 85.593 118 10 5 2366 2478 38034085 38033970 1.580000e-22 117.0
26 TraesCS5A01G035400 chr5B 86.486 111 9 4 2407 2514 38798985 38799092 1.580000e-22 117.0
27 TraesCS5A01G035400 chr5B 76.238 202 34 8 400 588 37857727 37857927 7.410000e-16 95.3
28 TraesCS5A01G035400 chr5D 84.000 575 64 13 1010 1578 42796644 42796092 6.170000e-146 527.0
29 TraesCS5A01G035400 chr5D 90.244 328 9 12 1365 1681 42954895 42955210 8.380000e-110 407.0
30 TraesCS5A01G035400 chr5D 83.777 376 47 10 223 587 42797480 42797108 6.670000e-91 344.0
31 TraesCS5A01G035400 chr5D 82.432 370 56 9 126 490 42797679 42797314 5.230000e-82 315.0
32 TraesCS5A01G035400 chr5D 84.411 263 36 5 231 490 42797522 42797262 1.160000e-63 254.0
33 TraesCS5A01G035400 chr5D 85.408 233 22 7 1841 2064 42961720 42961949 5.410000e-57 231.0
34 TraesCS5A01G035400 chr5D 78.694 291 54 8 143 431 42959978 42960262 1.190000e-43 187.0
35 TraesCS5A01G035400 chr5D 83.523 176 11 6 664 821 525125201 525125026 5.610000e-32 148.0
36 TraesCS5A01G035400 chr5D 87.826 115 14 0 1284 1398 42961158 42961272 4.370000e-28 135.0
37 TraesCS5A01G035400 chr5D 83.000 100 4 6 664 750 42796959 42796860 7.460000e-11 78.7
38 TraesCS5A01G035400 chr5D 84.146 82 11 2 409 488 42954752 42954833 7.460000e-11 78.7
39 TraesCS5A01G035400 chr3D 83.065 124 21 0 1273 1396 416989477 416989600 2.050000e-21 113.0
40 TraesCS5A01G035400 chr6B 82.677 127 20 2 1273 1398 506026754 506026879 7.360000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G035400 chr5A 32747537 32750053 2516 False 1657.00 4649 90.728667 1 2517 3 chr5A.!!$F6 2516
1 TraesCS5A01G035400 chr5A 32231005 32231540 535 False 303.50 475 87.149000 1814 2210 2 chr5A.!!$F5 396
2 TraesCS5A01G035400 chr5A 32758631 32759650 1019 False 301.50 375 85.032000 1736 2514 2 chr5A.!!$F7 778
3 TraesCS5A01G035400 chr5B 38767955 38768715 760 False 627.00 627 82.222000 1733 2514 1 chr5B.!!$F3 781
4 TraesCS5A01G035400 chr5B 38044804 38046719 1915 True 385.25 555 84.601500 123 2072 4 chr5B.!!$R4 1949
5 TraesCS5A01G035400 chr5B 38033970 38038232 4262 True 223.50 307 82.562000 220 2478 4 chr5B.!!$R3 2258
6 TraesCS5A01G035400 chr5D 42796092 42797679 1587 True 303.74 527 83.524000 126 1578 5 chr5D.!!$R2 1452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 3670 0.107214 CCGCCTCCAATTAGCTCCAA 60.107 55.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2350 5733 0.543277 TGAGGATCCAGGATGTGTGC 59.457 55.0 15.82 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.575965 GGCTAGTCCAACAACATTTGG 57.424 47.619 0.00 0.00 46.64 3.28
21 22 2.890945 GGCTAGTCCAACAACATTTGGT 59.109 45.455 1.94 0.00 45.60 3.67
22 23 3.057526 GGCTAGTCCAACAACATTTGGTC 60.058 47.826 1.94 0.00 45.60 4.02
23 24 3.568007 GCTAGTCCAACAACATTTGGTCA 59.432 43.478 1.94 0.00 45.60 4.02
24 25 4.037446 GCTAGTCCAACAACATTTGGTCAA 59.963 41.667 1.94 0.00 45.60 3.18
25 26 4.654091 AGTCCAACAACATTTGGTCAAG 57.346 40.909 1.94 0.00 45.60 3.02
26 27 4.023291 AGTCCAACAACATTTGGTCAAGT 58.977 39.130 1.94 0.00 45.60 3.16
27 28 4.111916 GTCCAACAACATTTGGTCAAGTG 58.888 43.478 4.94 4.94 45.60 3.16
28 29 3.766591 TCCAACAACATTTGGTCAAGTGT 59.233 39.130 6.11 6.11 45.60 3.55
33 34 4.470334 AACATTTGGTCAAGTGTTGCTT 57.530 36.364 19.03 1.05 45.41 3.91
35 36 4.831107 ACATTTGGTCAAGTGTTGCTTTT 58.169 34.783 6.11 0.00 37.91 2.27
56 57 6.737254 TTTTTAGAGGAAAGCTAATCCGTG 57.263 37.500 11.67 0.00 42.03 4.94
57 58 2.317530 AGAGGAAAGCTAATCCGTGC 57.682 50.000 11.67 6.81 42.03 5.34
58 59 1.555075 AGAGGAAAGCTAATCCGTGCA 59.445 47.619 11.67 0.00 42.03 4.57
59 60 1.936547 GAGGAAAGCTAATCCGTGCAG 59.063 52.381 11.67 0.00 42.03 4.41
60 61 1.555075 AGGAAAGCTAATCCGTGCAGA 59.445 47.619 11.67 0.00 42.03 4.26
61 62 1.666189 GGAAAGCTAATCCGTGCAGAC 59.334 52.381 2.93 0.00 0.00 3.51
62 63 2.346803 GAAAGCTAATCCGTGCAGACA 58.653 47.619 0.00 0.00 0.00 3.41
63 64 2.472695 AAGCTAATCCGTGCAGACAA 57.527 45.000 0.00 0.00 0.00 3.18
64 65 2.015736 AGCTAATCCGTGCAGACAAG 57.984 50.000 0.00 0.00 0.00 3.16
65 66 0.375106 GCTAATCCGTGCAGACAAGC 59.625 55.000 0.00 0.00 0.00 4.01
66 67 0.647410 CTAATCCGTGCAGACAAGCG 59.353 55.000 0.00 0.00 37.31 4.68
67 68 0.739462 TAATCCGTGCAGACAAGCGG 60.739 55.000 4.89 4.89 44.95 5.52
68 69 3.958147 ATCCGTGCAGACAAGCGGG 62.958 63.158 10.82 0.00 43.87 6.13
69 70 4.988598 CCGTGCAGACAAGCGGGT 62.989 66.667 3.38 0.00 40.45 5.28
70 71 3.414700 CGTGCAGACAAGCGGGTC 61.415 66.667 2.96 2.96 37.31 4.46
72 73 2.029844 GTGCAGACAAGCGGGTCTC 61.030 63.158 9.93 6.77 46.05 3.36
73 74 2.210013 TGCAGACAAGCGGGTCTCT 61.210 57.895 9.93 0.00 46.05 3.10
74 75 1.446966 GCAGACAAGCGGGTCTCTC 60.447 63.158 9.93 3.03 46.05 3.20
75 76 1.882989 GCAGACAAGCGGGTCTCTCT 61.883 60.000 9.93 0.00 46.05 3.10
76 77 0.605589 CAGACAAGCGGGTCTCTCTT 59.394 55.000 9.93 0.00 46.05 2.85
77 78 0.605589 AGACAAGCGGGTCTCTCTTG 59.394 55.000 7.40 0.71 44.63 3.02
78 79 2.442056 ACAAGCGGGTCTCTCTTGT 58.558 52.632 2.08 2.08 43.73 3.16
79 80 0.318762 ACAAGCGGGTCTCTCTTGTC 59.681 55.000 2.08 0.00 44.87 3.18
80 81 0.318441 CAAGCGGGTCTCTCTTGTCA 59.682 55.000 0.00 0.00 34.20 3.58
81 82 1.048601 AAGCGGGTCTCTCTTGTCAA 58.951 50.000 0.00 0.00 0.00 3.18
82 83 1.048601 AGCGGGTCTCTCTTGTCAAA 58.951 50.000 0.00 0.00 0.00 2.69
83 84 1.625818 AGCGGGTCTCTCTTGTCAAAT 59.374 47.619 0.00 0.00 0.00 2.32
84 85 2.039084 AGCGGGTCTCTCTTGTCAAATT 59.961 45.455 0.00 0.00 0.00 1.82
85 86 3.260884 AGCGGGTCTCTCTTGTCAAATTA 59.739 43.478 0.00 0.00 0.00 1.40
86 87 4.000988 GCGGGTCTCTCTTGTCAAATTAA 58.999 43.478 0.00 0.00 0.00 1.40
87 88 4.454504 GCGGGTCTCTCTTGTCAAATTAAA 59.545 41.667 0.00 0.00 0.00 1.52
88 89 5.390991 GCGGGTCTCTCTTGTCAAATTAAAG 60.391 44.000 0.00 0.00 0.00 1.85
89 90 5.122396 CGGGTCTCTCTTGTCAAATTAAAGG 59.878 44.000 0.00 0.00 0.00 3.11
90 91 6.238648 GGGTCTCTCTTGTCAAATTAAAGGA 58.761 40.000 0.00 0.00 0.00 3.36
91 92 6.715264 GGGTCTCTCTTGTCAAATTAAAGGAA 59.285 38.462 0.00 0.00 0.00 3.36
92 93 7.230712 GGGTCTCTCTTGTCAAATTAAAGGAAA 59.769 37.037 0.00 0.00 0.00 3.13
93 94 8.630037 GGTCTCTCTTGTCAAATTAAAGGAAAA 58.370 33.333 0.00 0.00 0.00 2.29
94 95 9.670719 GTCTCTCTTGTCAAATTAAAGGAAAAG 57.329 33.333 0.00 0.00 0.00 2.27
95 96 9.627123 TCTCTCTTGTCAAATTAAAGGAAAAGA 57.373 29.630 6.76 6.76 34.58 2.52
98 99 9.468532 CTCTTGTCAAATTAAAGGAAAAGAAGG 57.531 33.333 7.83 0.00 35.18 3.46
99 100 9.196139 TCTTGTCAAATTAAAGGAAAAGAAGGA 57.804 29.630 5.14 0.00 33.20 3.36
100 101 9.816354 CTTGTCAAATTAAAGGAAAAGAAGGAA 57.184 29.630 0.00 0.00 29.17 3.36
104 105 9.607988 TCAAATTAAAGGAAAAGAAGGAAAACC 57.392 29.630 0.00 0.00 0.00 3.27
105 106 8.836413 CAAATTAAAGGAAAAGAAGGAAAACCC 58.164 33.333 0.00 0.00 0.00 4.11
106 107 7.684317 ATTAAAGGAAAAGAAGGAAAACCCA 57.316 32.000 0.00 0.00 37.41 4.51
107 108 7.684317 TTAAAGGAAAAGAAGGAAAACCCAT 57.316 32.000 0.00 0.00 37.41 4.00
108 109 6.575244 AAAGGAAAAGAAGGAAAACCCATT 57.425 33.333 0.00 0.00 37.41 3.16
109 110 6.575244 AAGGAAAAGAAGGAAAACCCATTT 57.425 33.333 0.00 0.00 37.41 2.32
110 111 7.684317 AAGGAAAAGAAGGAAAACCCATTTA 57.316 32.000 0.00 0.00 37.41 1.40
111 112 7.062749 AGGAAAAGAAGGAAAACCCATTTAC 57.937 36.000 0.00 0.00 37.41 2.01
112 113 6.844388 AGGAAAAGAAGGAAAACCCATTTACT 59.156 34.615 0.00 0.00 44.43 2.24
117 118 3.582164 AGGAAAACCCATTTACTTGCCA 58.418 40.909 0.00 0.00 39.24 4.92
118 119 3.970640 AGGAAAACCCATTTACTTGCCAA 59.029 39.130 0.00 0.00 39.24 4.52
119 120 4.410555 AGGAAAACCCATTTACTTGCCAAA 59.589 37.500 0.00 0.00 39.24 3.28
120 121 5.073008 AGGAAAACCCATTTACTTGCCAAAT 59.927 36.000 0.00 0.00 39.24 2.32
121 122 5.767665 GGAAAACCCATTTACTTGCCAAATT 59.232 36.000 0.00 0.00 34.14 1.82
122 123 6.937465 GGAAAACCCATTTACTTGCCAAATTA 59.063 34.615 0.00 0.00 34.14 1.40
123 124 7.445707 GGAAAACCCATTTACTTGCCAAATTAA 59.554 33.333 0.00 0.00 34.14 1.40
124 125 8.753497 AAAACCCATTTACTTGCCAAATTAAA 57.247 26.923 0.00 0.00 0.00 1.52
125 126 8.932434 AAACCCATTTACTTGCCAAATTAAAT 57.068 26.923 0.09 0.09 33.66 1.40
146 147 9.744468 TTAAATAAAAGAAGGAAAAGTCACAGC 57.256 29.630 0.00 0.00 0.00 4.40
159 160 1.686052 GTCACAGCAAATGGTTTGGGA 59.314 47.619 4.77 0.00 40.94 4.37
170 171 2.593026 TGGTTTGGGATTGTTGTCCTC 58.407 47.619 0.00 0.00 38.38 3.71
177 178 2.758979 GGGATTGTTGTCCTCGTCTAGA 59.241 50.000 0.00 0.00 38.38 2.43
200 201 8.533569 AGAAATTAGAAAAAGTGTGGAAGGAA 57.466 30.769 0.00 0.00 0.00 3.36
208 211 3.584733 AGTGTGGAAGGAAAAAGCTCT 57.415 42.857 0.00 0.00 0.00 4.09
279 282 2.492881 TGCCACATCACTTTATGCCTTG 59.507 45.455 0.00 0.00 0.00 3.61
280 283 2.159198 GCCACATCACTTTATGCCTTGG 60.159 50.000 0.00 0.00 0.00 3.61
281 284 3.355378 CCACATCACTTTATGCCTTGGA 58.645 45.455 0.00 0.00 0.00 3.53
329 332 4.160642 TGATGCCTCATCACTTTATGCT 57.839 40.909 5.48 0.00 44.60 3.79
332 335 4.707030 TGCCTCATCACTTTATGCTTTG 57.293 40.909 0.00 0.00 0.00 2.77
353 410 6.956202 TTGATAAAAACTTACGGGTTGGAA 57.044 33.333 0.00 0.00 0.00 3.53
355 412 7.344095 TGATAAAAACTTACGGGTTGGAAAA 57.656 32.000 0.00 0.00 0.00 2.29
365 422 2.295909 CGGGTTGGAAAACACATGATGT 59.704 45.455 0.00 0.00 46.42 3.06
370 427 5.215160 GTTGGAAAACACATGATGTCTCAC 58.785 41.667 0.00 0.00 42.31 3.51
381 438 4.558226 TGATGTCTCACCACTTTATGCT 57.442 40.909 0.00 0.00 0.00 3.79
395 452 8.697292 ACCACTTTATGCTTTGGTAAAAACTTA 58.303 29.630 0.00 0.00 40.69 2.24
396 453 8.974408 CCACTTTATGCTTTGGTAAAAACTTAC 58.026 33.333 0.00 0.00 0.00 2.34
405 464 6.521151 TTGGTAAAAACTTACGGGTTGAAA 57.479 33.333 0.00 0.00 0.00 2.69
407 466 6.928520 TGGTAAAAACTTACGGGTTGAAAAA 58.071 32.000 0.00 0.00 0.00 1.94
412 471 4.359971 ACTTACGGGTTGAAAAACACAC 57.640 40.909 0.00 0.00 32.77 3.82
431 490 3.196901 ACACGATGCCTCACCACTTTATA 59.803 43.478 0.00 0.00 0.00 0.98
433 492 3.451178 ACGATGCCTCACCACTTTATACT 59.549 43.478 0.00 0.00 0.00 2.12
436 495 5.220662 CGATGCCTCACCACTTTATACTTTG 60.221 44.000 0.00 0.00 0.00 2.77
444 503 9.673454 CTCACCACTTTATACTTTGGTAAAAAC 57.327 33.333 0.00 0.00 40.51 2.43
457 517 4.530875 TGGTAAAAACTTACGGGTTGGAA 58.469 39.130 0.00 0.00 0.00 3.53
459 519 5.420104 TGGTAAAAACTTACGGGTTGGAAAA 59.580 36.000 0.00 0.00 0.00 2.29
490 550 2.945668 CCTCACCACTTTATGCCTTAGC 59.054 50.000 0.00 0.00 40.48 3.09
507 673 1.089920 AGCGAAGGCATGTCATCAAC 58.910 50.000 0.00 0.00 43.41 3.18
509 675 1.742761 CGAAGGCATGTCATCAACCT 58.257 50.000 0.00 0.00 36.27 3.50
510 676 1.399440 CGAAGGCATGTCATCAACCTG 59.601 52.381 0.00 0.00 35.36 4.00
511 677 2.440409 GAAGGCATGTCATCAACCTGT 58.560 47.619 0.00 0.00 35.36 4.00
512 678 2.592102 AGGCATGTCATCAACCTGTT 57.408 45.000 0.00 0.00 34.37 3.16
566 742 1.713078 AGACCTTTGAAGCCCCATCTT 59.287 47.619 0.00 0.00 0.00 2.40
620 3510 8.588290 AGTGAATAAATGGGCTTGTAATAACA 57.412 30.769 0.00 0.00 0.00 2.41
641 3531 7.588143 AACAGAGAGAACTTAATTGATGACG 57.412 36.000 0.00 0.00 0.00 4.35
642 3532 5.578727 ACAGAGAGAACTTAATTGATGACGC 59.421 40.000 0.00 0.00 0.00 5.19
645 3535 4.327357 AGAGAACTTAATTGATGACGCGTG 59.673 41.667 20.70 0.00 0.00 5.34
646 3536 3.994392 AGAACTTAATTGATGACGCGTGT 59.006 39.130 20.70 4.52 0.00 4.49
647 3537 3.991605 ACTTAATTGATGACGCGTGTC 57.008 42.857 20.70 22.00 45.71 3.67
648 3538 3.585862 ACTTAATTGATGACGCGTGTCT 58.414 40.909 27.76 14.61 45.70 3.41
649 3539 3.612860 ACTTAATTGATGACGCGTGTCTC 59.387 43.478 27.76 21.44 45.70 3.36
716 3635 2.476185 CCAATCGCTTCGGCTTGTTAAG 60.476 50.000 0.00 0.00 39.13 1.85
718 3637 1.710013 TCGCTTCGGCTTGTTAAGAG 58.290 50.000 0.00 0.00 39.13 2.85
741 3660 4.349503 ACATGCAGCCGCCTCCAA 62.350 61.111 0.00 0.00 37.32 3.53
751 3670 0.107214 CCGCCTCCAATTAGCTCCAA 60.107 55.000 0.00 0.00 0.00 3.53
754 3673 1.745653 GCCTCCAATTAGCTCCAACAC 59.254 52.381 0.00 0.00 0.00 3.32
755 3674 2.879756 GCCTCCAATTAGCTCCAACACA 60.880 50.000 0.00 0.00 0.00 3.72
757 3676 4.019174 CCTCCAATTAGCTCCAACACAAT 58.981 43.478 0.00 0.00 0.00 2.71
758 3677 4.096984 CCTCCAATTAGCTCCAACACAATC 59.903 45.833 0.00 0.00 0.00 2.67
759 3678 4.922206 TCCAATTAGCTCCAACACAATCT 58.078 39.130 0.00 0.00 0.00 2.40
760 3679 4.943705 TCCAATTAGCTCCAACACAATCTC 59.056 41.667 0.00 0.00 0.00 2.75
761 3680 4.201851 CCAATTAGCTCCAACACAATCTCG 60.202 45.833 0.00 0.00 0.00 4.04
763 3682 1.016130 AGCTCCAACACAATCTCGCG 61.016 55.000 0.00 0.00 0.00 5.87
765 3684 2.096406 CCAACACAATCTCGCGCG 59.904 61.111 26.76 26.76 0.00 6.86
767 3686 3.041351 AACACAATCTCGCGCGCA 61.041 55.556 32.61 15.03 0.00 6.09
771 3690 1.226974 ACAATCTCGCGCGCATAGT 60.227 52.632 32.61 16.47 0.00 2.12
783 3704 0.531532 CGCATAGTGAGCAGGGAAGG 60.532 60.000 0.00 0.00 0.00 3.46
785 3706 1.210478 GCATAGTGAGCAGGGAAGGAA 59.790 52.381 0.00 0.00 0.00 3.36
788 3711 1.130054 AGTGAGCAGGGAAGGAAGCA 61.130 55.000 0.00 0.00 0.00 3.91
805 3733 1.880027 AGCACCTTCAACATCCGTTTC 59.120 47.619 0.00 0.00 31.13 2.78
821 3749 2.765250 TTTCTCCAGCGACGGTGAGC 62.765 60.000 27.42 0.00 32.22 4.26
822 3750 3.753434 CTCCAGCGACGGTGAGCT 61.753 66.667 27.42 0.00 45.74 4.09
826 3758 1.515088 CAGCGACGGTGAGCTACTG 60.515 63.158 21.96 0.66 42.52 2.74
832 3764 1.153823 CGGTGAGCTACTGTTCCCG 60.154 63.158 0.00 0.00 33.78 5.14
833 3765 1.218316 GGTGAGCTACTGTTCCCGG 59.782 63.158 0.00 0.00 0.00 5.73
836 3768 2.606519 AGCTACTGTTCCCGGCCA 60.607 61.111 2.24 0.00 0.00 5.36
837 3769 1.972660 GAGCTACTGTTCCCGGCCAT 61.973 60.000 2.24 0.00 0.00 4.40
838 3770 1.523938 GCTACTGTTCCCGGCCATC 60.524 63.158 2.24 0.00 0.00 3.51
839 3771 1.227263 CTACTGTTCCCGGCCATCG 60.227 63.158 2.24 0.00 38.88 3.84
840 3772 1.672854 CTACTGTTCCCGGCCATCGA 61.673 60.000 2.24 0.00 42.43 3.59
841 3773 1.259142 TACTGTTCCCGGCCATCGAA 61.259 55.000 2.24 0.00 42.43 3.71
842 3774 1.153168 CTGTTCCCGGCCATCGAAT 60.153 57.895 2.24 0.00 42.43 3.34
843 3775 1.439353 CTGTTCCCGGCCATCGAATG 61.439 60.000 2.24 0.00 42.43 2.67
844 3776 1.451387 GTTCCCGGCCATCGAATGT 60.451 57.895 2.24 0.00 42.43 2.71
845 3777 1.029947 GTTCCCGGCCATCGAATGTT 61.030 55.000 2.24 0.00 42.43 2.71
846 3778 1.029408 TTCCCGGCCATCGAATGTTG 61.029 55.000 2.24 0.00 42.43 3.33
871 3803 2.159142 ACTTTGTCTTTCGTCGTGGTCT 60.159 45.455 0.00 0.00 0.00 3.85
872 3804 1.847818 TTGTCTTTCGTCGTGGTCTG 58.152 50.000 0.00 0.00 0.00 3.51
873 3805 0.742505 TGTCTTTCGTCGTGGTCTGT 59.257 50.000 0.00 0.00 0.00 3.41
875 3807 1.001597 GTCTTTCGTCGTGGTCTGTCT 60.002 52.381 0.00 0.00 0.00 3.41
876 3808 1.001706 TCTTTCGTCGTGGTCTGTCTG 60.002 52.381 0.00 0.00 0.00 3.51
877 3809 1.001706 CTTTCGTCGTGGTCTGTCTGA 60.002 52.381 0.00 0.00 0.00 3.27
878 3810 1.244816 TTCGTCGTGGTCTGTCTGAT 58.755 50.000 0.00 0.00 0.00 2.90
879 3811 0.803117 TCGTCGTGGTCTGTCTGATC 59.197 55.000 0.00 0.00 0.00 2.92
881 3813 2.007608 CGTCGTGGTCTGTCTGATCTA 58.992 52.381 0.00 0.00 0.00 1.98
882 3814 2.223066 CGTCGTGGTCTGTCTGATCTAC 60.223 54.545 0.00 0.00 0.00 2.59
883 3815 3.011119 GTCGTGGTCTGTCTGATCTACT 58.989 50.000 0.00 0.00 0.00 2.57
884 3816 3.064271 GTCGTGGTCTGTCTGATCTACTC 59.936 52.174 0.00 0.00 0.00 2.59
885 3817 2.356382 CGTGGTCTGTCTGATCTACTCC 59.644 54.545 0.00 0.00 0.00 3.85
886 3818 3.626930 GTGGTCTGTCTGATCTACTCCT 58.373 50.000 0.00 0.00 0.00 3.69
887 3819 3.630312 GTGGTCTGTCTGATCTACTCCTC 59.370 52.174 0.00 0.00 0.00 3.71
888 3820 3.525609 TGGTCTGTCTGATCTACTCCTCT 59.474 47.826 0.00 0.00 0.00 3.69
889 3821 4.722279 TGGTCTGTCTGATCTACTCCTCTA 59.278 45.833 0.00 0.00 0.00 2.43
890 3822 5.163248 TGGTCTGTCTGATCTACTCCTCTAG 60.163 48.000 0.00 0.00 0.00 2.43
891 3823 5.163237 GGTCTGTCTGATCTACTCCTCTAGT 60.163 48.000 0.00 0.00 42.62 2.57
897 3829 5.306937 TCTGATCTACTCCTCTAGTCCTCTG 59.693 48.000 0.00 0.00 39.80 3.35
902 3838 2.508300 ACTCCTCTAGTCCTCTGTCTCC 59.492 54.545 0.00 0.00 30.33 3.71
908 3844 1.755008 GTCCTCTGTCTCCCCTCCG 60.755 68.421 0.00 0.00 0.00 4.63
911 3847 0.905337 CCTCTGTCTCCCCTCCGTTT 60.905 60.000 0.00 0.00 0.00 3.60
913 3849 0.903454 TCTGTCTCCCCTCCGTTTCC 60.903 60.000 0.00 0.00 0.00 3.13
917 3853 1.073444 GTCTCCCCTCCGTTTCCTTTT 59.927 52.381 0.00 0.00 0.00 2.27
918 3854 1.778484 TCTCCCCTCCGTTTCCTTTTT 59.222 47.619 0.00 0.00 0.00 1.94
926 3899 4.436986 CCTCCGTTTCCTTTTTCTAATCGC 60.437 45.833 0.00 0.00 0.00 4.58
940 3913 1.016130 AATCGCGTGCTCTTGTCCTG 61.016 55.000 5.77 0.00 0.00 3.86
962 3946 4.751767 GCTAGCTAGCTTGGATCCATAT 57.248 45.455 33.71 7.19 45.62 1.78
963 3947 4.692228 GCTAGCTAGCTTGGATCCATATC 58.308 47.826 33.71 7.76 45.62 1.63
964 3948 3.883830 AGCTAGCTTGGATCCATATCG 57.116 47.619 17.06 5.91 32.44 2.92
965 3949 3.435275 AGCTAGCTTGGATCCATATCGA 58.565 45.455 17.06 0.00 32.44 3.59
966 3950 3.194542 AGCTAGCTTGGATCCATATCGAC 59.805 47.826 17.06 4.74 32.44 4.20
967 3951 3.194542 GCTAGCTTGGATCCATATCGACT 59.805 47.826 17.06 9.28 32.44 4.18
968 3952 3.951775 AGCTTGGATCCATATCGACTC 57.048 47.619 17.06 0.00 32.44 3.36
969 3953 2.230025 AGCTTGGATCCATATCGACTCG 59.770 50.000 17.06 0.00 32.44 4.18
970 3954 2.600731 CTTGGATCCATATCGACTCGC 58.399 52.381 17.06 0.00 32.44 5.03
971 3955 0.888619 TGGATCCATATCGACTCGCC 59.111 55.000 11.44 0.00 32.44 5.54
972 3956 0.179161 GGATCCATATCGACTCGCCG 60.179 60.000 6.95 0.00 32.44 6.46
973 3957 0.798771 GATCCATATCGACTCGCCGC 60.799 60.000 0.00 0.00 0.00 6.53
974 3958 1.524008 ATCCATATCGACTCGCCGCA 61.524 55.000 0.00 0.00 0.00 5.69
975 3959 1.730902 CCATATCGACTCGCCGCAG 60.731 63.158 0.00 0.00 0.00 5.18
976 3960 2.049985 ATATCGACTCGCCGCAGC 60.050 61.111 0.00 0.00 0.00 5.25
977 3961 2.845550 ATATCGACTCGCCGCAGCA 61.846 57.895 0.00 0.00 39.83 4.41
978 3962 2.349969 ATATCGACTCGCCGCAGCAA 62.350 55.000 0.00 0.00 39.83 3.91
979 3963 2.551097 TATCGACTCGCCGCAGCAAA 62.551 55.000 0.00 0.00 39.83 3.68
980 3964 3.711842 CGACTCGCCGCAGCAAAA 61.712 61.111 0.00 0.00 39.83 2.44
981 3965 2.637025 GACTCGCCGCAGCAAAAA 59.363 55.556 0.00 0.00 39.83 1.94
996 3980 4.637771 AAAAAGGAGGCCGGATCG 57.362 55.556 5.05 0.00 0.00 3.69
997 3981 1.988015 AAAAAGGAGGCCGGATCGA 59.012 52.632 5.05 0.00 0.00 3.59
998 3982 0.392595 AAAAAGGAGGCCGGATCGAC 60.393 55.000 5.05 0.00 0.00 4.20
999 3983 2.253403 AAAAGGAGGCCGGATCGACC 62.253 60.000 5.05 6.05 0.00 4.79
1000 3984 3.976490 AAGGAGGCCGGATCGACCA 62.976 63.158 5.05 0.00 38.90 4.02
1001 3985 3.234730 GGAGGCCGGATCGACCAT 61.235 66.667 5.05 0.00 38.90 3.55
1002 3986 2.029666 GAGGCCGGATCGACCATG 59.970 66.667 5.05 0.00 38.90 3.66
1003 3987 3.521529 GAGGCCGGATCGACCATGG 62.522 68.421 11.19 11.19 38.90 3.66
1004 3988 3.546543 GGCCGGATCGACCATGGA 61.547 66.667 21.47 0.00 38.90 3.41
1005 3989 2.029666 GCCGGATCGACCATGGAG 59.970 66.667 21.47 12.28 38.90 3.86
1006 3990 2.737180 CCGGATCGACCATGGAGG 59.263 66.667 21.47 9.72 45.67 4.30
1127 4111 2.833582 CTCCTTCGCCCTCGCCTA 60.834 66.667 0.00 0.00 35.26 3.93
1135 4119 3.782443 CCCTCGCCTACCACCACC 61.782 72.222 0.00 0.00 0.00 4.61
1157 4141 0.828022 CCCTGCGACCTGGTATGTAA 59.172 55.000 0.00 0.00 0.00 2.41
1159 4143 2.483876 CCTGCGACCTGGTATGTAATG 58.516 52.381 0.00 0.00 0.00 1.90
1160 4144 2.158957 CCTGCGACCTGGTATGTAATGT 60.159 50.000 0.00 0.00 0.00 2.71
1161 4145 3.069016 CCTGCGACCTGGTATGTAATGTA 59.931 47.826 0.00 0.00 0.00 2.29
1162 4146 4.442332 CCTGCGACCTGGTATGTAATGTAA 60.442 45.833 0.00 0.00 0.00 2.41
1163 4147 4.689071 TGCGACCTGGTATGTAATGTAAG 58.311 43.478 0.00 0.00 0.00 2.34
1164 4148 4.160814 TGCGACCTGGTATGTAATGTAAGT 59.839 41.667 0.00 0.00 0.00 2.24
1165 4149 5.360429 TGCGACCTGGTATGTAATGTAAGTA 59.640 40.000 0.00 0.00 0.00 2.24
1166 4150 6.041182 TGCGACCTGGTATGTAATGTAAGTAT 59.959 38.462 0.00 0.00 0.00 2.12
1167 4151 6.365247 GCGACCTGGTATGTAATGTAAGTATG 59.635 42.308 0.00 0.00 0.00 2.39
1168 4152 7.431249 CGACCTGGTATGTAATGTAAGTATGT 58.569 38.462 0.00 0.00 0.00 2.29
1169 4153 8.570488 CGACCTGGTATGTAATGTAAGTATGTA 58.430 37.037 0.00 0.00 0.00 2.29
1196 4193 3.110613 ACGACCCGTCTACGTACAACG 62.111 57.143 15.42 15.42 41.50 4.10
1209 4206 2.352388 GTACAACGCCTTGGATGCTTA 58.648 47.619 0.51 0.00 0.00 3.09
1238 4245 4.998788 GACCGATCGATCCATCATATTCA 58.001 43.478 18.66 0.00 0.00 2.57
1271 4278 1.515954 CAGCCGACGGACATTACCT 59.484 57.895 20.50 0.00 0.00 3.08
1371 4388 2.045131 GTGCCCTCGTCTACCTCGT 61.045 63.158 0.00 0.00 0.00 4.18
1376 4393 1.025113 CCTCGTCTACCTCGTGCTCA 61.025 60.000 0.00 0.00 0.00 4.26
1400 4417 0.670546 AGCCATCGTCGTCCACTTTG 60.671 55.000 0.00 0.00 0.00 2.77
1405 4422 0.748450 TCGTCGTCCACTTTGTCCTT 59.252 50.000 0.00 0.00 0.00 3.36
1421 4438 0.107456 CCTTATGATGGCTGCCGAGT 59.893 55.000 14.98 2.10 0.00 4.18
1424 4441 1.758440 TATGATGGCTGCCGAGTCCC 61.758 60.000 14.98 0.00 0.00 4.46
1432 4449 0.606401 CTGCCGAGTCCCACAACATT 60.606 55.000 0.00 0.00 0.00 2.71
1473 4490 1.609635 TTCTTCATGGCGGGCGACTA 61.610 55.000 0.00 0.00 0.00 2.59
1474 4491 1.883084 CTTCATGGCGGGCGACTAC 60.883 63.158 0.00 0.00 0.00 2.73
1495 4512 3.790437 AGCGTCCTGGCCCTCATG 61.790 66.667 0.00 0.00 0.00 3.07
1510 4527 1.630369 CTCATGTTGGGAGGTGAGGAA 59.370 52.381 0.00 0.00 35.58 3.36
1522 4539 1.210722 GGTGAGGAAGATTGAGGACCC 59.789 57.143 0.00 0.00 0.00 4.46
1530 4547 4.884164 GGAAGATTGAGGACCCATTAGTTG 59.116 45.833 0.00 0.00 0.00 3.16
1550 4567 2.169352 TGAGCTCTTTAGATGAGGCACC 59.831 50.000 16.19 0.00 32.57 5.01
1553 4570 2.158696 GCTCTTTAGATGAGGCACCCAT 60.159 50.000 0.00 0.00 32.57 4.00
1555 4572 3.114606 TCTTTAGATGAGGCACCCATGA 58.885 45.455 0.00 0.00 0.00 3.07
1556 4573 3.118261 TCTTTAGATGAGGCACCCATGAC 60.118 47.826 0.00 0.00 0.00 3.06
1578 4604 4.021280 ACTGAGACTGACTGACGAGTAGTA 60.021 45.833 0.00 0.00 30.16 1.82
1580 4606 3.252400 AGACTGACTGACGAGTAGTACG 58.748 50.000 0.00 0.00 30.16 3.67
1581 4607 2.992543 GACTGACTGACGAGTAGTACGT 59.007 50.000 0.00 0.00 46.58 3.57
1582 4608 4.082517 AGACTGACTGACGAGTAGTACGTA 60.083 45.833 0.00 0.00 43.97 3.57
1584 4610 3.515630 TGACTGACGAGTAGTACGTAGG 58.484 50.000 0.00 0.00 43.97 3.18
1585 4611 2.275318 ACTGACGAGTAGTACGTAGGC 58.725 52.381 0.00 0.00 43.97 3.93
1586 4612 2.274437 CTGACGAGTAGTACGTAGGCA 58.726 52.381 0.00 0.00 43.97 4.75
1587 4613 2.871022 CTGACGAGTAGTACGTAGGCAT 59.129 50.000 0.00 0.00 43.97 4.40
1589 4615 3.064408 TGACGAGTAGTACGTAGGCATTG 59.936 47.826 0.00 0.00 43.97 2.82
1590 4616 3.273434 ACGAGTAGTACGTAGGCATTGA 58.727 45.455 0.00 0.00 42.17 2.57
1591 4617 3.881688 ACGAGTAGTACGTAGGCATTGAT 59.118 43.478 0.00 0.00 42.17 2.57
1592 4618 4.219802 CGAGTAGTACGTAGGCATTGATG 58.780 47.826 0.00 0.00 0.00 3.07
1593 4619 4.024302 CGAGTAGTACGTAGGCATTGATGA 60.024 45.833 0.00 0.00 0.00 2.92
1594 4620 5.440234 AGTAGTACGTAGGCATTGATGAG 57.560 43.478 0.00 0.00 0.00 2.90
1597 4623 2.315925 ACGTAGGCATTGATGAGTGG 57.684 50.000 0.00 0.00 0.00 4.00
1598 4624 1.555075 ACGTAGGCATTGATGAGTGGT 59.445 47.619 0.00 0.00 0.00 4.16
1599 4625 2.027192 ACGTAGGCATTGATGAGTGGTT 60.027 45.455 0.00 0.00 0.00 3.67
1600 4626 2.609459 CGTAGGCATTGATGAGTGGTTC 59.391 50.000 0.00 0.00 0.00 3.62
1601 4627 3.679917 CGTAGGCATTGATGAGTGGTTCT 60.680 47.826 0.00 0.00 0.00 3.01
1602 4628 4.441495 CGTAGGCATTGATGAGTGGTTCTA 60.441 45.833 0.00 0.00 0.00 2.10
1603 4629 4.148128 AGGCATTGATGAGTGGTTCTAG 57.852 45.455 0.00 0.00 0.00 2.43
1604 4630 2.615912 GGCATTGATGAGTGGTTCTAGC 59.384 50.000 0.00 0.00 0.00 3.42
1605 4631 2.615912 GCATTGATGAGTGGTTCTAGCC 59.384 50.000 0.00 0.00 0.00 3.93
1606 4632 3.683847 GCATTGATGAGTGGTTCTAGCCT 60.684 47.826 0.00 0.00 0.00 4.58
1607 4633 4.521146 CATTGATGAGTGGTTCTAGCCTT 58.479 43.478 0.00 0.00 0.00 4.35
1608 4634 3.895232 TGATGAGTGGTTCTAGCCTTC 57.105 47.619 0.00 0.00 0.00 3.46
1609 4635 3.445008 TGATGAGTGGTTCTAGCCTTCT 58.555 45.455 0.00 0.00 0.00 2.85
1610 4636 4.610333 TGATGAGTGGTTCTAGCCTTCTA 58.390 43.478 0.00 0.00 0.00 2.10
1611 4637 4.646945 TGATGAGTGGTTCTAGCCTTCTAG 59.353 45.833 0.00 0.00 42.87 2.43
1612 4638 3.366396 TGAGTGGTTCTAGCCTTCTAGG 58.634 50.000 0.00 0.00 42.01 3.02
1613 4639 3.011369 TGAGTGGTTCTAGCCTTCTAGGA 59.989 47.826 0.00 0.00 42.01 2.94
1614 4640 3.634910 GAGTGGTTCTAGCCTTCTAGGAG 59.365 52.174 0.00 0.00 42.01 3.69
1615 4641 2.101750 GTGGTTCTAGCCTTCTAGGAGC 59.898 54.545 0.00 3.53 45.11 4.70
1616 4642 2.023888 TGGTTCTAGCCTTCTAGGAGCT 60.024 50.000 10.17 0.00 45.12 4.09
1617 4643 3.035363 GGTTCTAGCCTTCTAGGAGCTT 58.965 50.000 7.27 0.00 42.79 3.74
1621 4647 3.829601 TCTAGCCTTCTAGGAGCTTATGC 59.170 47.826 7.27 0.00 42.01 3.14
1625 4651 8.670922 CTAGCCTTCTAGGAGCTTATGCTGTG 62.671 50.000 8.01 0.01 42.03 3.66
1639 4665 1.678101 TGCTGTGATGATCGATCGAGT 59.322 47.619 23.84 11.79 33.17 4.18
1640 4666 2.049959 GCTGTGATGATCGATCGAGTG 58.950 52.381 23.84 9.20 33.17 3.51
1641 4667 2.049959 CTGTGATGATCGATCGAGTGC 58.950 52.381 23.84 15.04 33.17 4.40
1642 4668 1.678101 TGTGATGATCGATCGAGTGCT 59.322 47.619 23.84 6.28 33.17 4.40
1644 4670 1.678101 TGATGATCGATCGAGTGCTGT 59.322 47.619 23.84 5.03 33.17 4.40
1645 4671 2.878406 TGATGATCGATCGAGTGCTGTA 59.122 45.455 23.84 3.77 33.17 2.74
1646 4672 3.503748 TGATGATCGATCGAGTGCTGTAT 59.496 43.478 23.84 3.38 33.17 2.29
1648 4674 5.181245 TGATGATCGATCGAGTGCTGTATTA 59.819 40.000 23.84 0.88 33.17 0.98
1649 4675 5.432885 TGATCGATCGAGTGCTGTATTAA 57.567 39.130 23.84 0.00 0.00 1.40
1650 4676 6.013842 TGATCGATCGAGTGCTGTATTAAT 57.986 37.500 23.84 0.96 0.00 1.40
1651 4677 6.086871 TGATCGATCGAGTGCTGTATTAATC 58.913 40.000 23.84 11.25 0.00 1.75
1653 4679 6.796705 TCGATCGAGTGCTGTATTAATCTA 57.203 37.500 15.15 0.00 0.00 1.98
1654 4680 6.832804 TCGATCGAGTGCTGTATTAATCTAG 58.167 40.000 15.15 0.00 0.00 2.43
1655 4681 5.509972 CGATCGAGTGCTGTATTAATCTAGC 59.490 44.000 10.26 13.96 36.72 3.42
1656 4682 6.582677 ATCGAGTGCTGTATTAATCTAGCT 57.417 37.500 18.91 0.00 37.10 3.32
1658 4684 7.135089 TCGAGTGCTGTATTAATCTAGCTAG 57.865 40.000 15.01 15.01 37.10 3.42
1659 4685 6.711194 TCGAGTGCTGTATTAATCTAGCTAGT 59.289 38.462 20.10 4.89 37.10 2.57
1661 4687 8.172484 CGAGTGCTGTATTAATCTAGCTAGTAG 58.828 40.741 20.10 0.00 37.10 2.57
1662 4688 8.927675 AGTGCTGTATTAATCTAGCTAGTAGT 57.072 34.615 20.10 9.10 37.10 2.73
1663 4689 8.788806 AGTGCTGTATTAATCTAGCTAGTAGTG 58.211 37.037 20.10 0.00 37.10 2.74
1664 4690 8.569641 GTGCTGTATTAATCTAGCTAGTAGTGT 58.430 37.037 20.10 8.02 37.10 3.55
1665 4691 9.788889 TGCTGTATTAATCTAGCTAGTAGTGTA 57.211 33.333 20.10 7.13 37.10 2.90
1675 4701 8.890124 TCTAGCTAGTAGTGTACTGTATTCTG 57.110 38.462 20.10 0.00 39.81 3.02
1676 4702 8.484575 TCTAGCTAGTAGTGTACTGTATTCTGT 58.515 37.037 20.10 0.00 39.81 3.41
1677 4703 7.941431 AGCTAGTAGTGTACTGTATTCTGTT 57.059 36.000 0.00 0.00 39.81 3.16
1679 4705 9.458727 AGCTAGTAGTGTACTGTATTCTGTTAA 57.541 33.333 0.00 0.00 39.81 2.01
1682 4708 7.533426 AGTAGTGTACTGTATTCTGTTAACCG 58.467 38.462 2.48 0.00 37.69 4.44
1683 4709 5.717119 AGTGTACTGTATTCTGTTAACCGG 58.283 41.667 0.00 0.00 0.00 5.28
1684 4710 4.866486 GTGTACTGTATTCTGTTAACCGGG 59.134 45.833 6.32 0.00 0.00 5.73
1685 4711 4.527816 TGTACTGTATTCTGTTAACCGGGT 59.472 41.667 6.32 0.00 0.00 5.28
1686 4712 5.714333 TGTACTGTATTCTGTTAACCGGGTA 59.286 40.000 6.32 0.00 0.00 3.69
1687 4713 5.334724 ACTGTATTCTGTTAACCGGGTAG 57.665 43.478 6.32 0.00 0.00 3.18
1688 4714 5.018809 ACTGTATTCTGTTAACCGGGTAGA 58.981 41.667 6.32 0.00 0.00 2.59
1689 4715 5.659971 ACTGTATTCTGTTAACCGGGTAGAT 59.340 40.000 6.32 0.00 0.00 1.98
1690 4716 6.835488 ACTGTATTCTGTTAACCGGGTAGATA 59.165 38.462 6.32 0.00 0.00 1.98
1691 4717 7.508296 ACTGTATTCTGTTAACCGGGTAGATAT 59.492 37.037 6.32 0.00 0.00 1.63
1692 4718 7.889469 TGTATTCTGTTAACCGGGTAGATATC 58.111 38.462 6.32 0.00 0.00 1.63
1693 4719 5.796424 TTCTGTTAACCGGGTAGATATCC 57.204 43.478 6.32 0.00 0.00 2.59
1694 4720 4.154942 TCTGTTAACCGGGTAGATATCCC 58.845 47.826 6.32 0.00 41.41 3.85
1695 4721 4.140853 TCTGTTAACCGGGTAGATATCCCT 60.141 45.833 6.32 0.00 42.56 4.20
1696 4722 4.154942 TGTTAACCGGGTAGATATCCCTC 58.845 47.826 6.32 0.00 42.56 4.30
1697 4723 4.154942 GTTAACCGGGTAGATATCCCTCA 58.845 47.826 6.32 0.00 42.56 3.86
1698 4724 3.562108 AACCGGGTAGATATCCCTCAT 57.438 47.619 6.32 0.00 42.56 2.90
1699 4725 3.103080 ACCGGGTAGATATCCCTCATC 57.897 52.381 6.32 0.00 42.56 2.92
1700 4726 2.025155 CCGGGTAGATATCCCTCATCG 58.975 57.143 0.00 0.00 42.56 3.84
1701 4727 2.356844 CCGGGTAGATATCCCTCATCGA 60.357 54.545 0.00 0.00 42.56 3.59
1702 4728 2.683867 CGGGTAGATATCCCTCATCGAC 59.316 54.545 0.00 0.00 42.56 4.20
1703 4729 3.622704 CGGGTAGATATCCCTCATCGACT 60.623 52.174 0.00 0.00 42.56 4.18
1704 4730 4.383880 CGGGTAGATATCCCTCATCGACTA 60.384 50.000 0.00 0.00 42.56 2.59
1705 4731 5.127491 GGGTAGATATCCCTCATCGACTAG 58.873 50.000 0.00 0.00 41.58 2.57
1706 4732 5.339365 GGGTAGATATCCCTCATCGACTAGT 60.339 48.000 0.00 0.00 41.58 2.57
1707 4733 6.126825 GGGTAGATATCCCTCATCGACTAGTA 60.127 46.154 0.00 0.00 41.58 1.82
1708 4734 6.762661 GGTAGATATCCCTCATCGACTAGTAC 59.237 46.154 0.00 0.00 31.15 2.73
1721 4747 4.153117 TCGACTAGTACTTGGTTTCGACTC 59.847 45.833 12.19 0.00 0.00 3.36
1753 4782 5.859495 TGGCCTTTTATCGTCCAAAAATTT 58.141 33.333 3.32 0.00 0.00 1.82
1781 4810 2.993899 GTGTAAACTGGACGATCCTGTG 59.006 50.000 14.12 4.86 46.19 3.66
1782 4811 2.028476 TGTAAACTGGACGATCCTGTGG 60.028 50.000 14.12 0.00 46.19 4.17
1783 4812 1.056660 AAACTGGACGATCCTGTGGT 58.943 50.000 14.12 6.21 46.19 4.16
1784 4813 0.321671 AACTGGACGATCCTGTGGTG 59.678 55.000 14.12 0.04 46.19 4.17
1785 4814 1.448540 CTGGACGATCCTGTGGTGC 60.449 63.158 0.00 0.00 37.46 5.01
1786 4815 1.892819 CTGGACGATCCTGTGGTGCT 61.893 60.000 0.00 0.00 37.46 4.40
1788 4817 0.321653 GGACGATCCTGTGGTGCTTT 60.322 55.000 0.00 0.00 32.53 3.51
1790 4819 2.614481 GGACGATCCTGTGGTGCTTTAA 60.614 50.000 0.00 0.00 32.53 1.52
1792 4821 3.270877 ACGATCCTGTGGTGCTTTAATC 58.729 45.455 0.00 0.00 0.00 1.75
1796 4825 4.098914 TCCTGTGGTGCTTTAATCTGTT 57.901 40.909 0.00 0.00 0.00 3.16
1797 4826 5.235850 TCCTGTGGTGCTTTAATCTGTTA 57.764 39.130 0.00 0.00 0.00 2.41
1798 4827 5.245531 TCCTGTGGTGCTTTAATCTGTTAG 58.754 41.667 0.00 0.00 0.00 2.34
1799 4828 4.142600 CCTGTGGTGCTTTAATCTGTTAGC 60.143 45.833 0.00 0.00 0.00 3.09
1801 4830 4.455533 TGTGGTGCTTTAATCTGTTAGCTG 59.544 41.667 0.00 0.00 0.00 4.24
1802 4831 4.455877 GTGGTGCTTTAATCTGTTAGCTGT 59.544 41.667 0.00 0.00 0.00 4.40
1804 4833 5.534654 TGGTGCTTTAATCTGTTAGCTGTTT 59.465 36.000 0.00 0.00 0.00 2.83
1806 4835 7.229707 TGGTGCTTTAATCTGTTAGCTGTTTTA 59.770 33.333 0.00 0.00 0.00 1.52
1807 4836 8.244113 GGTGCTTTAATCTGTTAGCTGTTTTAT 58.756 33.333 0.00 0.00 0.00 1.40
1839 4921 3.076621 TGCTTCAGTTTGGTATGCTCAG 58.923 45.455 0.00 0.00 0.00 3.35
1844 4926 2.417933 CAGTTTGGTATGCTCAGCACTC 59.582 50.000 0.00 0.00 43.04 3.51
1897 4996 3.006940 TGCTGGTTTTAGCCTGTAATCG 58.993 45.455 0.00 0.00 43.02 3.34
1938 5053 4.741676 GCATGTGTTTTTCAGACAAGGAAG 59.258 41.667 0.00 0.00 0.00 3.46
1951 5069 1.072965 CAAGGAAGGGAAGTGCAGAGT 59.927 52.381 0.00 0.00 0.00 3.24
1957 5075 3.141767 AGGGAAGTGCAGAGTAAAACC 57.858 47.619 0.00 0.00 0.00 3.27
1969 5098 6.426937 TGCAGAGTAAAACCTTCAGATTACAC 59.573 38.462 0.00 0.00 32.10 2.90
2095 5468 2.096819 CGGTGCCATTACGCTTATGTTT 59.903 45.455 0.00 0.00 0.00 2.83
2203 5582 7.174772 ACTTGCAGAATCACACATGTATGTTTA 59.825 33.333 3.64 0.00 39.39 2.01
2204 5583 6.841119 TGCAGAATCACACATGTATGTTTAC 58.159 36.000 3.64 0.00 39.39 2.01
2205 5584 6.654582 TGCAGAATCACACATGTATGTTTACT 59.345 34.615 3.64 0.13 39.39 2.24
2206 5585 7.174772 TGCAGAATCACACATGTATGTTTACTT 59.825 33.333 3.64 0.00 39.39 2.24
2207 5586 7.693951 GCAGAATCACACATGTATGTTTACTTC 59.306 37.037 3.64 1.97 39.39 3.01
2208 5587 8.720562 CAGAATCACACATGTATGTTTACTTCA 58.279 33.333 3.64 0.00 39.39 3.02
2209 5588 9.283768 AGAATCACACATGTATGTTTACTTCAA 57.716 29.630 3.64 0.00 39.39 2.69
2210 5589 9.891828 GAATCACACATGTATGTTTACTTCAAA 57.108 29.630 3.64 0.00 39.39 2.69
2303 5685 6.620877 TGTTCAAGTACAGGAATATGGACT 57.379 37.500 0.00 0.00 46.69 3.85
2305 5687 5.023533 TCAAGTACAGGAATATGGACTGC 57.976 43.478 0.00 0.00 43.83 4.40
2324 5707 1.626654 CTACGCTCAAACCGCACCTG 61.627 60.000 0.00 0.00 0.00 4.00
2346 5729 3.557595 GTGACAGTTCTTGAACTCAGTGG 59.442 47.826 12.51 4.98 0.00 4.00
2350 5733 3.806521 CAGTTCTTGAACTCAGTGGACTG 59.193 47.826 12.51 0.00 45.08 3.51
2355 5742 1.221414 GAACTCAGTGGACTGCACAC 58.779 55.000 3.27 0.00 43.46 3.82
2394 5913 2.306847 ACCAACCAACCAAGATGACAC 58.693 47.619 0.00 0.00 0.00 3.67
2397 5916 3.131933 CCAACCAACCAAGATGACACAAA 59.868 43.478 0.00 0.00 0.00 2.83
2401 5920 4.466015 ACCAACCAAGATGACACAAAAACT 59.534 37.500 0.00 0.00 0.00 2.66
2402 5921 5.046663 ACCAACCAAGATGACACAAAAACTT 60.047 36.000 0.00 0.00 0.00 2.66
2442 5962 1.951602 GCATACATCAGCTGCATGGAA 59.048 47.619 22.07 14.08 35.96 3.53
2446 5970 2.636830 ACATCAGCTGCATGGAACTAC 58.363 47.619 22.07 0.00 0.00 2.73
2450 5974 3.754965 TCAGCTGCATGGAACTACTTTT 58.245 40.909 9.47 0.00 0.00 2.27
2465 5989 7.148239 GGAACTACTTTTCATGTCCCAACTATG 60.148 40.741 0.00 0.00 0.00 2.23
2468 5992 8.380099 ACTACTTTTCATGTCCCAACTATGTAA 58.620 33.333 0.00 0.00 0.00 2.41
2469 5993 9.396022 CTACTTTTCATGTCCCAACTATGTAAT 57.604 33.333 0.00 0.00 0.00 1.89
2471 5995 9.747898 ACTTTTCATGTCCCAACTATGTAATAA 57.252 29.630 0.00 0.00 0.00 1.40
2514 6040 4.154375 CCATGTATCTCAGCAATCAGATGC 59.846 45.833 0.00 0.00 46.78 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.453281 CAACACTTGACCAAATGTTGTTG 57.547 39.130 21.70 15.23 44.39 3.33
12 13 4.470334 AAGCAACACTTGACCAAATGTT 57.530 36.364 4.04 4.04 37.17 2.71
13 14 4.470334 AAAGCAACACTTGACCAAATGT 57.530 36.364 0.00 0.00 39.09 2.71
14 15 5.799681 AAAAAGCAACACTTGACCAAATG 57.200 34.783 0.00 0.00 39.09 2.32
33 34 5.123344 GCACGGATTAGCTTTCCTCTAAAAA 59.877 40.000 12.18 0.00 30.76 1.94
35 36 4.189231 GCACGGATTAGCTTTCCTCTAAA 58.811 43.478 12.18 0.00 30.76 1.85
37 38 2.764010 TGCACGGATTAGCTTTCCTCTA 59.236 45.455 12.18 0.00 0.00 2.43
38 39 1.555075 TGCACGGATTAGCTTTCCTCT 59.445 47.619 12.18 0.00 0.00 3.69
39 40 1.936547 CTGCACGGATTAGCTTTCCTC 59.063 52.381 12.18 4.05 0.00 3.71
40 41 1.555075 TCTGCACGGATTAGCTTTCCT 59.445 47.619 12.18 0.00 0.00 3.36
42 43 2.346803 TGTCTGCACGGATTAGCTTTC 58.653 47.619 0.00 0.00 0.00 2.62
43 44 2.472695 TGTCTGCACGGATTAGCTTT 57.527 45.000 0.00 0.00 0.00 3.51
44 45 2.350522 CTTGTCTGCACGGATTAGCTT 58.649 47.619 0.00 0.00 0.00 3.74
45 46 2.009042 GCTTGTCTGCACGGATTAGCT 61.009 52.381 0.00 0.00 0.00 3.32
46 47 0.375106 GCTTGTCTGCACGGATTAGC 59.625 55.000 0.00 1.59 0.00 3.09
47 48 0.647410 CGCTTGTCTGCACGGATTAG 59.353 55.000 0.00 0.00 0.00 1.73
48 49 2.749541 CGCTTGTCTGCACGGATTA 58.250 52.632 0.00 0.00 0.00 1.75
52 53 4.988598 ACCCGCTTGTCTGCACGG 62.989 66.667 4.30 4.30 45.21 4.94
53 54 3.414700 GACCCGCTTGTCTGCACG 61.415 66.667 0.00 0.00 32.39 5.34
54 55 2.029844 GAGACCCGCTTGTCTGCAC 61.030 63.158 9.43 0.00 45.41 4.57
55 56 2.159819 GAGAGACCCGCTTGTCTGCA 62.160 60.000 9.43 0.00 45.41 4.41
56 57 1.446966 GAGAGACCCGCTTGTCTGC 60.447 63.158 9.43 2.91 45.41 4.26
57 58 0.605589 AAGAGAGACCCGCTTGTCTG 59.394 55.000 9.43 0.00 45.41 3.51
59 60 3.129792 CAAGAGAGACCCGCTTGTC 57.870 57.895 0.00 0.00 44.38 3.18
62 63 1.048601 TTGACAAGAGAGACCCGCTT 58.951 50.000 0.00 0.00 35.19 4.68
63 64 1.048601 TTTGACAAGAGAGACCCGCT 58.951 50.000 0.00 0.00 0.00 5.52
64 65 2.100605 ATTTGACAAGAGAGACCCGC 57.899 50.000 0.00 0.00 0.00 6.13
65 66 5.122396 CCTTTAATTTGACAAGAGAGACCCG 59.878 44.000 0.00 0.00 0.00 5.28
66 67 6.238648 TCCTTTAATTTGACAAGAGAGACCC 58.761 40.000 0.00 0.00 0.00 4.46
67 68 7.745620 TTCCTTTAATTTGACAAGAGAGACC 57.254 36.000 0.00 0.00 0.00 3.85
68 69 9.670719 CTTTTCCTTTAATTTGACAAGAGAGAC 57.329 33.333 0.00 0.00 0.00 3.36
69 70 9.627123 TCTTTTCCTTTAATTTGACAAGAGAGA 57.373 29.630 0.00 0.00 0.00 3.10
72 73 9.468532 CCTTCTTTTCCTTTAATTTGACAAGAG 57.531 33.333 0.00 0.00 29.49 2.85
73 74 9.196139 TCCTTCTTTTCCTTTAATTTGACAAGA 57.804 29.630 0.00 0.00 0.00 3.02
74 75 9.816354 TTCCTTCTTTTCCTTTAATTTGACAAG 57.184 29.630 0.00 0.00 0.00 3.16
78 79 9.607988 GGTTTTCCTTCTTTTCCTTTAATTTGA 57.392 29.630 0.00 0.00 36.94 2.69
79 80 8.836413 GGGTTTTCCTTCTTTTCCTTTAATTTG 58.164 33.333 0.00 0.00 40.46 2.32
80 81 8.553153 TGGGTTTTCCTTCTTTTCCTTTAATTT 58.447 29.630 0.00 0.00 40.46 1.82
81 82 8.096621 TGGGTTTTCCTTCTTTTCCTTTAATT 57.903 30.769 0.00 0.00 40.46 1.40
82 83 7.684317 TGGGTTTTCCTTCTTTTCCTTTAAT 57.316 32.000 0.00 0.00 40.46 1.40
83 84 7.684317 ATGGGTTTTCCTTCTTTTCCTTTAA 57.316 32.000 0.00 0.00 40.46 1.52
84 85 7.684317 AATGGGTTTTCCTTCTTTTCCTTTA 57.316 32.000 0.00 0.00 40.46 1.85
85 86 6.575244 AATGGGTTTTCCTTCTTTTCCTTT 57.425 33.333 0.00 0.00 40.46 3.11
86 87 6.575244 AAATGGGTTTTCCTTCTTTTCCTT 57.425 33.333 0.00 0.00 40.46 3.36
87 88 6.844388 AGTAAATGGGTTTTCCTTCTTTTCCT 59.156 34.615 0.00 0.00 40.46 3.36
88 89 7.062749 AGTAAATGGGTTTTCCTTCTTTTCC 57.937 36.000 0.00 0.00 40.46 3.13
89 90 7.042051 GCAAGTAAATGGGTTTTCCTTCTTTTC 60.042 37.037 0.00 0.00 40.46 2.29
90 91 6.765989 GCAAGTAAATGGGTTTTCCTTCTTTT 59.234 34.615 0.00 0.00 40.46 2.27
91 92 6.288294 GCAAGTAAATGGGTTTTCCTTCTTT 58.712 36.000 0.00 0.00 40.46 2.52
92 93 5.221641 GGCAAGTAAATGGGTTTTCCTTCTT 60.222 40.000 0.00 0.00 40.46 2.52
93 94 4.283467 GGCAAGTAAATGGGTTTTCCTTCT 59.717 41.667 0.00 0.00 40.46 2.85
94 95 4.039852 TGGCAAGTAAATGGGTTTTCCTTC 59.960 41.667 0.00 0.00 40.46 3.46
95 96 3.970640 TGGCAAGTAAATGGGTTTTCCTT 59.029 39.130 0.00 0.00 40.46 3.36
96 97 3.582164 TGGCAAGTAAATGGGTTTTCCT 58.418 40.909 0.00 0.00 40.46 3.36
97 98 4.344359 TTGGCAAGTAAATGGGTTTTCC 57.656 40.909 0.00 0.00 39.75 3.13
98 99 6.875948 AATTTGGCAAGTAAATGGGTTTTC 57.124 33.333 0.00 0.00 0.00 2.29
99 100 8.753497 TTTAATTTGGCAAGTAAATGGGTTTT 57.247 26.923 11.83 0.00 29.59 2.43
100 101 8.932434 ATTTAATTTGGCAAGTAAATGGGTTT 57.068 26.923 20.97 6.01 40.16 3.27
120 121 9.744468 GCTGTGACTTTTCCTTCTTTTATTTAA 57.256 29.630 0.00 0.00 0.00 1.52
121 122 8.908903 TGCTGTGACTTTTCCTTCTTTTATTTA 58.091 29.630 0.00 0.00 0.00 1.40
122 123 7.781056 TGCTGTGACTTTTCCTTCTTTTATTT 58.219 30.769 0.00 0.00 0.00 1.40
123 124 7.346751 TGCTGTGACTTTTCCTTCTTTTATT 57.653 32.000 0.00 0.00 0.00 1.40
124 125 6.959639 TGCTGTGACTTTTCCTTCTTTTAT 57.040 33.333 0.00 0.00 0.00 1.40
125 126 6.767524 TTGCTGTGACTTTTCCTTCTTTTA 57.232 33.333 0.00 0.00 0.00 1.52
126 127 5.659440 TTGCTGTGACTTTTCCTTCTTTT 57.341 34.783 0.00 0.00 0.00 2.27
127 128 5.659440 TTTGCTGTGACTTTTCCTTCTTT 57.341 34.783 0.00 0.00 0.00 2.52
128 129 5.452356 CCATTTGCTGTGACTTTTCCTTCTT 60.452 40.000 0.00 0.00 0.00 2.52
129 130 4.038402 CCATTTGCTGTGACTTTTCCTTCT 59.962 41.667 0.00 0.00 0.00 2.85
130 131 4.202151 ACCATTTGCTGTGACTTTTCCTTC 60.202 41.667 0.00 0.00 0.00 3.46
140 141 2.079170 TCCCAAACCATTTGCTGTGA 57.921 45.000 0.00 0.00 39.31 3.58
141 142 3.068560 CAATCCCAAACCATTTGCTGTG 58.931 45.455 0.00 0.00 39.31 3.66
143 144 3.405823 ACAATCCCAAACCATTTGCTG 57.594 42.857 0.00 0.00 39.31 4.41
146 147 4.064388 GGACAACAATCCCAAACCATTTG 58.936 43.478 0.00 0.00 40.32 2.32
159 160 7.837863 TCTAATTTCTAGACGAGGACAACAAT 58.162 34.615 0.00 0.00 0.00 2.71
170 171 8.306680 TCCACACTTTTTCTAATTTCTAGACG 57.693 34.615 0.00 0.00 0.00 4.18
177 178 9.952030 TTTTTCCTTCCACACTTTTTCTAATTT 57.048 25.926 0.00 0.00 0.00 1.82
200 201 4.877773 TCATCCTCCTCTAGAGAGCTTTT 58.122 43.478 21.76 0.00 46.50 2.27
208 211 3.116977 TCAAGGCATCATCCTCCTCTAGA 60.117 47.826 0.00 0.00 34.82 2.43
262 265 6.418057 TTTTTCCAAGGCATAAAGTGATGT 57.582 33.333 0.00 0.00 0.00 3.06
288 291 1.152963 GTGCTATCCAACCCCGCAT 60.153 57.895 0.00 0.00 32.75 4.73
329 332 6.956202 TCCAACCCGTAAGTTTTTATCAAA 57.044 33.333 0.00 0.00 0.00 2.69
332 335 7.167968 GTGTTTTCCAACCCGTAAGTTTTTATC 59.832 37.037 0.00 0.00 31.02 1.75
343 346 2.060050 TCATGTGTTTTCCAACCCGT 57.940 45.000 0.00 0.00 31.02 5.28
353 410 4.090761 AGTGGTGAGACATCATGTGTTT 57.909 40.909 0.00 0.00 42.36 2.83
355 412 3.777106 AAGTGGTGAGACATCATGTGT 57.223 42.857 0.00 0.00 45.83 3.72
365 422 4.098914 ACCAAAGCATAAAGTGGTGAGA 57.901 40.909 0.00 0.00 42.79 3.27
370 427 8.974408 GTAAGTTTTTACCAAAGCATAAAGTGG 58.026 33.333 0.00 0.00 34.37 4.00
381 438 6.521151 TTCAACCCGTAAGTTTTTACCAAA 57.479 33.333 0.00 0.00 36.60 3.28
395 452 1.451067 TCGTGTGTTTTTCAACCCGT 58.549 45.000 0.00 0.00 31.02 5.28
396 453 2.380660 CATCGTGTGTTTTTCAACCCG 58.619 47.619 0.00 0.00 31.02 5.28
405 464 0.179032 TGGTGAGGCATCGTGTGTTT 60.179 50.000 0.00 0.00 0.00 2.83
407 466 1.301716 GTGGTGAGGCATCGTGTGT 60.302 57.895 0.00 0.00 0.00 3.72
412 471 4.060038 AGTATAAAGTGGTGAGGCATCG 57.940 45.455 0.00 0.00 0.00 3.84
431 490 5.163530 CCAACCCGTAAGTTTTTACCAAAGT 60.164 40.000 0.00 0.00 36.60 2.66
433 492 4.952335 TCCAACCCGTAAGTTTTTACCAAA 59.048 37.500 0.00 0.00 36.60 3.28
436 495 5.512753 TTTCCAACCCGTAAGTTTTTACC 57.487 39.130 0.00 0.00 36.60 2.85
444 503 3.566322 TCATGTGTTTTCCAACCCGTAAG 59.434 43.478 0.00 0.00 31.02 2.34
447 506 2.060050 TCATGTGTTTTCCAACCCGT 57.940 45.000 0.00 0.00 31.02 5.28
457 517 1.888512 GTGGTGAGGCATCATGTGTTT 59.111 47.619 3.55 0.00 37.87 2.83
459 519 0.694771 AGTGGTGAGGCATCATGTGT 59.305 50.000 3.55 0.00 37.87 3.72
490 550 1.399440 CAGGTTGATGACATGCCTTCG 59.601 52.381 0.00 0.00 32.79 3.79
533 709 5.356882 TCAAAGGTCTACAAAATTCAGCG 57.643 39.130 0.00 0.00 0.00 5.18
598 3488 9.120538 TCTCTGTTATTACAAGCCCATTTATTC 57.879 33.333 0.00 0.00 32.92 1.75
606 3496 5.735766 AGTTCTCTCTGTTATTACAAGCCC 58.264 41.667 0.00 0.00 32.92 5.19
619 3509 5.276114 CGCGTCATCAATTAAGTTCTCTCTG 60.276 44.000 0.00 0.00 0.00 3.35
620 3510 4.800993 CGCGTCATCAATTAAGTTCTCTCT 59.199 41.667 0.00 0.00 0.00 3.10
741 3660 2.939103 GCGAGATTGTGTTGGAGCTAAT 59.061 45.455 0.00 0.00 0.00 1.73
751 3670 1.482621 CTATGCGCGCGAGATTGTGT 61.483 55.000 37.18 11.19 0.00 3.72
754 3673 1.200103 CACTATGCGCGCGAGATTG 59.800 57.895 37.18 25.00 0.00 2.67
755 3674 0.936764 CTCACTATGCGCGCGAGATT 60.937 55.000 37.18 16.51 0.00 2.40
757 3676 2.024729 CTCACTATGCGCGCGAGA 59.975 61.111 37.18 20.12 0.00 4.04
758 3677 3.686320 GCTCACTATGCGCGCGAG 61.686 66.667 37.18 26.77 0.00 5.03
759 3678 4.490575 TGCTCACTATGCGCGCGA 62.491 61.111 37.18 19.53 29.18 5.87
760 3679 3.981159 CTGCTCACTATGCGCGCG 61.981 66.667 28.44 28.44 29.18 6.86
761 3680 3.634072 CCTGCTCACTATGCGCGC 61.634 66.667 27.26 27.26 29.18 6.86
763 3682 1.153369 TTCCCTGCTCACTATGCGC 60.153 57.895 0.00 0.00 0.00 6.09
765 3684 0.833287 TCCTTCCCTGCTCACTATGC 59.167 55.000 0.00 0.00 0.00 3.14
767 3686 1.488393 GCTTCCTTCCCTGCTCACTAT 59.512 52.381 0.00 0.00 0.00 2.12
771 3690 1.376466 GTGCTTCCTTCCCTGCTCA 59.624 57.895 0.00 0.00 0.00 4.26
783 3704 1.523758 ACGGATGTTGAAGGTGCTTC 58.476 50.000 0.00 0.00 40.54 3.86
785 3706 1.880027 GAAACGGATGTTGAAGGTGCT 59.120 47.619 0.00 0.00 38.62 4.40
788 3711 2.105821 TGGAGAAACGGATGTTGAAGGT 59.894 45.455 0.00 0.00 38.62 3.50
805 3733 2.407428 TAGCTCACCGTCGCTGGAG 61.407 63.158 0.00 0.00 37.05 3.86
821 3749 1.227263 CGATGGCCGGGAACAGTAG 60.227 63.158 2.18 0.00 33.91 2.57
822 3750 1.259142 TTCGATGGCCGGGAACAGTA 61.259 55.000 2.18 0.00 39.14 2.74
826 3758 1.029947 AACATTCGATGGCCGGGAAC 61.030 55.000 2.18 0.00 39.14 3.62
827 3759 1.029408 CAACATTCGATGGCCGGGAA 61.029 55.000 2.18 1.28 39.14 3.97
828 3760 1.451207 CAACATTCGATGGCCGGGA 60.451 57.895 2.18 0.00 39.14 5.14
830 3762 0.813610 TAGCAACATTCGATGGCCGG 60.814 55.000 0.00 0.00 39.14 6.13
832 3764 2.017049 AGTTAGCAACATTCGATGGCC 58.983 47.619 0.00 0.00 33.60 5.36
833 3765 3.764885 AAGTTAGCAACATTCGATGGC 57.235 42.857 0.00 0.00 33.60 4.40
836 3768 6.560253 AAGACAAAGTTAGCAACATTCGAT 57.440 33.333 0.00 0.00 0.00 3.59
837 3769 6.371809 AAAGACAAAGTTAGCAACATTCGA 57.628 33.333 0.00 0.00 0.00 3.71
838 3770 5.336990 CGAAAGACAAAGTTAGCAACATTCG 59.663 40.000 0.00 0.00 0.00 3.34
839 3771 6.199393 ACGAAAGACAAAGTTAGCAACATTC 58.801 36.000 0.00 0.00 0.00 2.67
840 3772 6.131544 ACGAAAGACAAAGTTAGCAACATT 57.868 33.333 0.00 0.00 0.00 2.71
841 3773 5.558273 CGACGAAAGACAAAGTTAGCAACAT 60.558 40.000 0.00 0.00 0.00 2.71
842 3774 4.260051 CGACGAAAGACAAAGTTAGCAACA 60.260 41.667 0.00 0.00 0.00 3.33
843 3775 4.201576 CGACGAAAGACAAAGTTAGCAAC 58.798 43.478 0.00 0.00 0.00 4.17
844 3776 3.866910 ACGACGAAAGACAAAGTTAGCAA 59.133 39.130 0.00 0.00 0.00 3.91
845 3777 3.244345 CACGACGAAAGACAAAGTTAGCA 59.756 43.478 0.00 0.00 0.00 3.49
846 3778 3.362693 CCACGACGAAAGACAAAGTTAGC 60.363 47.826 0.00 0.00 0.00 3.09
871 3803 4.972568 AGGACTAGAGGAGTAGATCAGACA 59.027 45.833 0.00 0.00 39.06 3.41
872 3804 5.307196 AGAGGACTAGAGGAGTAGATCAGAC 59.693 48.000 0.00 0.00 39.06 3.51
873 3805 5.306937 CAGAGGACTAGAGGAGTAGATCAGA 59.693 48.000 0.00 0.00 39.06 3.27
875 3807 4.972568 ACAGAGGACTAGAGGAGTAGATCA 59.027 45.833 0.00 0.00 39.06 2.92
876 3808 5.307196 AGACAGAGGACTAGAGGAGTAGATC 59.693 48.000 0.00 0.00 39.06 2.75
877 3809 5.224441 AGACAGAGGACTAGAGGAGTAGAT 58.776 45.833 0.00 0.00 39.06 1.98
878 3810 4.627015 AGACAGAGGACTAGAGGAGTAGA 58.373 47.826 0.00 0.00 39.06 2.59
879 3811 4.202326 GGAGACAGAGGACTAGAGGAGTAG 60.202 54.167 0.00 0.00 39.06 2.57
881 3813 2.508300 GGAGACAGAGGACTAGAGGAGT 59.492 54.545 0.00 0.00 42.90 3.85
882 3814 2.158667 GGGAGACAGAGGACTAGAGGAG 60.159 59.091 0.00 0.00 0.00 3.69
883 3815 1.847737 GGGAGACAGAGGACTAGAGGA 59.152 57.143 0.00 0.00 0.00 3.71
884 3816 1.133606 GGGGAGACAGAGGACTAGAGG 60.134 61.905 0.00 0.00 0.00 3.69
885 3817 1.850345 AGGGGAGACAGAGGACTAGAG 59.150 57.143 0.00 0.00 0.00 2.43
886 3818 1.847737 GAGGGGAGACAGAGGACTAGA 59.152 57.143 0.00 0.00 0.00 2.43
887 3819 1.133606 GGAGGGGAGACAGAGGACTAG 60.134 61.905 0.00 0.00 0.00 2.57
888 3820 0.927767 GGAGGGGAGACAGAGGACTA 59.072 60.000 0.00 0.00 0.00 2.59
889 3821 1.700985 GGAGGGGAGACAGAGGACT 59.299 63.158 0.00 0.00 0.00 3.85
890 3822 1.755008 CGGAGGGGAGACAGAGGAC 60.755 68.421 0.00 0.00 0.00 3.85
891 3823 1.801302 AACGGAGGGGAGACAGAGGA 61.801 60.000 0.00 0.00 0.00 3.71
897 3829 0.691332 AAAGGAAACGGAGGGGAGAC 59.309 55.000 0.00 0.00 0.00 3.36
902 3838 4.094442 CGATTAGAAAAAGGAAACGGAGGG 59.906 45.833 0.00 0.00 0.00 4.30
908 3844 3.602489 GCACGCGATTAGAAAAAGGAAAC 59.398 43.478 15.93 0.00 0.00 2.78
911 3847 2.671396 GAGCACGCGATTAGAAAAAGGA 59.329 45.455 15.93 0.00 0.00 3.36
913 3849 3.999229 AGAGCACGCGATTAGAAAAAG 57.001 42.857 15.93 0.00 0.00 2.27
917 3853 2.259618 GACAAGAGCACGCGATTAGAA 58.740 47.619 15.93 0.00 0.00 2.10
918 3854 1.469251 GGACAAGAGCACGCGATTAGA 60.469 52.381 15.93 0.00 0.00 2.10
926 3899 0.459237 CTAGCCAGGACAAGAGCACG 60.459 60.000 0.00 0.00 0.00 5.34
960 3944 2.551097 TTTGCTGCGGCGAGTCGATA 62.551 55.000 18.61 0.00 42.25 2.92
961 3945 3.932580 TTTGCTGCGGCGAGTCGAT 62.933 57.895 18.61 0.00 42.25 3.59
962 3946 4.656117 TTTGCTGCGGCGAGTCGA 62.656 61.111 18.61 0.00 42.25 4.20
963 3947 3.235292 TTTTTGCTGCGGCGAGTCG 62.235 57.895 12.98 8.54 42.25 4.18
964 3948 2.637025 TTTTTGCTGCGGCGAGTC 59.363 55.556 12.98 0.00 42.25 3.36
979 3963 0.392595 GTCGATCCGGCCTCCTTTTT 60.393 55.000 0.00 0.00 0.00 1.94
980 3964 1.221021 GTCGATCCGGCCTCCTTTT 59.779 57.895 0.00 0.00 0.00 2.27
981 3965 2.901042 GTCGATCCGGCCTCCTTT 59.099 61.111 0.00 0.00 0.00 3.11
988 3972 2.029666 CTCCATGGTCGATCCGGC 59.970 66.667 12.58 0.00 39.52 6.13
989 3973 2.737180 CCTCCATGGTCGATCCGG 59.263 66.667 12.58 0.00 39.52 5.14
998 3982 4.873129 CGCCGTCGACCTCCATGG 62.873 72.222 10.58 4.97 42.93 3.66
999 3983 3.822192 TCGCCGTCGACCTCCATG 61.822 66.667 10.58 0.00 40.21 3.66
1031 4015 1.134371 GGACCGGGATCTTCTTCTTGG 60.134 57.143 6.32 0.00 0.00 3.61
1095 4079 2.100603 GAGACGAGGAAGACGCCG 59.899 66.667 0.00 0.00 0.00 6.46
1096 4080 1.596895 AAGGAGACGAGGAAGACGCC 61.597 60.000 0.00 0.00 0.00 5.68
1109 4093 3.354472 TAGGCGAGGGCGAAGGAGA 62.354 63.158 0.00 0.00 41.24 3.71
1135 4119 1.762460 ATACCAGGTCGCAGGGGAG 60.762 63.158 0.00 0.00 0.00 4.30
1157 4141 7.260603 GGGTCGTAGTTGTTACATACTTACAT 58.739 38.462 5.75 0.00 32.27 2.29
1159 4143 5.739161 CGGGTCGTAGTTGTTACATACTTAC 59.261 44.000 5.75 0.16 32.27 2.34
1160 4144 5.414454 ACGGGTCGTAGTTGTTACATACTTA 59.586 40.000 5.75 0.00 38.73 2.24
1161 4145 4.218417 ACGGGTCGTAGTTGTTACATACTT 59.782 41.667 5.75 0.00 38.73 2.24
1162 4146 3.758554 ACGGGTCGTAGTTGTTACATACT 59.241 43.478 5.75 5.75 38.73 2.12
1163 4147 4.096732 ACGGGTCGTAGTTGTTACATAC 57.903 45.455 0.00 0.00 38.73 2.39
1164 4148 4.009675 AGACGGGTCGTAGTTGTTACATA 58.990 43.478 0.00 0.00 41.37 2.29
1165 4149 2.821969 AGACGGGTCGTAGTTGTTACAT 59.178 45.455 0.00 0.00 41.37 2.29
1166 4150 2.229792 AGACGGGTCGTAGTTGTTACA 58.770 47.619 0.00 0.00 41.37 2.41
1167 4151 2.997485 AGACGGGTCGTAGTTGTTAC 57.003 50.000 0.00 0.00 41.37 2.50
1168 4152 2.415168 CGTAGACGGGTCGTAGTTGTTA 59.585 50.000 0.00 0.00 41.37 2.41
1169 4153 1.197721 CGTAGACGGGTCGTAGTTGTT 59.802 52.381 0.00 0.00 41.37 2.83
1170 4154 0.798776 CGTAGACGGGTCGTAGTTGT 59.201 55.000 0.00 0.00 41.37 3.32
1171 4155 0.798776 ACGTAGACGGGTCGTAGTTG 59.201 55.000 7.04 0.00 41.37 3.16
1234 4241 1.019673 GGACGCACTGCATGATGAAT 58.980 50.000 0.00 0.00 0.00 2.57
1236 4243 0.741927 CTGGACGCACTGCATGATGA 60.742 55.000 0.00 0.00 0.00 2.92
1237 4244 1.719709 CTGGACGCACTGCATGATG 59.280 57.895 0.00 0.00 0.00 3.07
1238 4245 2.110967 GCTGGACGCACTGCATGAT 61.111 57.895 0.00 0.00 38.92 2.45
1381 4398 0.670546 CAAAGTGGACGACGATGGCT 60.671 55.000 0.00 0.00 0.00 4.75
1400 4417 0.106708 TCGGCAGCCATCATAAGGAC 59.893 55.000 13.30 0.00 0.00 3.85
1405 4422 1.748403 GGACTCGGCAGCCATCATA 59.252 57.895 13.30 0.00 0.00 2.15
1421 4438 4.305539 AGATCATGACAATGTTGTGGGA 57.694 40.909 0.00 0.00 42.43 4.37
1424 4441 5.876460 TCCAGTAGATCATGACAATGTTGTG 59.124 40.000 0.00 0.00 42.43 3.33
1432 4449 4.550669 AGATGGTCCAGTAGATCATGACA 58.449 43.478 0.00 0.00 46.79 3.58
1481 4498 1.379044 CCAACATGAGGGCCAGGAC 60.379 63.158 6.18 0.00 0.00 3.85
1493 4510 2.044793 TCTTCCTCACCTCCCAACAT 57.955 50.000 0.00 0.00 0.00 2.71
1495 4512 2.305927 TCAATCTTCCTCACCTCCCAAC 59.694 50.000 0.00 0.00 0.00 3.77
1510 4527 4.384647 GCTCAACTAATGGGTCCTCAATCT 60.385 45.833 0.00 0.00 0.00 2.40
1522 4539 6.202570 GCCTCATCTAAAGAGCTCAACTAATG 59.797 42.308 17.77 13.27 0.00 1.90
1530 4547 2.484594 GGGTGCCTCATCTAAAGAGCTC 60.485 54.545 5.27 5.27 0.00 4.09
1550 4567 2.415224 CGTCAGTCAGTCTCAGTCATGG 60.415 54.545 0.00 0.00 0.00 3.66
1553 4570 2.147150 CTCGTCAGTCAGTCTCAGTCA 58.853 52.381 0.00 0.00 0.00 3.41
1555 4572 2.264005 ACTCGTCAGTCAGTCTCAGT 57.736 50.000 0.00 0.00 0.00 3.41
1556 4573 3.331150 ACTACTCGTCAGTCAGTCTCAG 58.669 50.000 0.00 0.00 33.62 3.35
1557 4574 3.404224 ACTACTCGTCAGTCAGTCTCA 57.596 47.619 0.00 0.00 33.62 3.27
1558 4575 3.304026 CGTACTACTCGTCAGTCAGTCTC 59.696 52.174 0.00 0.00 33.62 3.36
1559 4576 3.252400 CGTACTACTCGTCAGTCAGTCT 58.748 50.000 0.00 0.00 33.62 3.24
1578 4604 1.555075 ACCACTCATCAATGCCTACGT 59.445 47.619 0.00 0.00 0.00 3.57
1580 4606 3.878778 AGAACCACTCATCAATGCCTAC 58.121 45.455 0.00 0.00 0.00 3.18
1581 4607 4.443457 GCTAGAACCACTCATCAATGCCTA 60.443 45.833 0.00 0.00 0.00 3.93
1582 4608 3.683847 GCTAGAACCACTCATCAATGCCT 60.684 47.826 0.00 0.00 0.00 4.75
1584 4610 2.615912 GGCTAGAACCACTCATCAATGC 59.384 50.000 0.00 0.00 0.00 3.56
1585 4611 4.148128 AGGCTAGAACCACTCATCAATG 57.852 45.455 0.00 0.00 0.00 2.82
1586 4612 4.472833 AGAAGGCTAGAACCACTCATCAAT 59.527 41.667 0.00 0.00 0.00 2.57
1587 4613 3.840666 AGAAGGCTAGAACCACTCATCAA 59.159 43.478 0.00 0.00 0.00 2.57
1589 4615 4.038642 CCTAGAAGGCTAGAACCACTCATC 59.961 50.000 0.00 0.00 45.71 2.92
1590 4616 3.964031 CCTAGAAGGCTAGAACCACTCAT 59.036 47.826 0.00 0.00 45.71 2.90
1591 4617 3.011369 TCCTAGAAGGCTAGAACCACTCA 59.989 47.826 0.00 0.00 45.71 3.41
1592 4618 3.633418 TCCTAGAAGGCTAGAACCACTC 58.367 50.000 0.00 0.00 45.71 3.51
1593 4619 3.637769 CTCCTAGAAGGCTAGAACCACT 58.362 50.000 0.00 0.00 45.71 4.00
1594 4620 2.101750 GCTCCTAGAAGGCTAGAACCAC 59.898 54.545 0.00 0.00 45.71 4.16
1597 4623 5.778862 CATAAGCTCCTAGAAGGCTAGAAC 58.221 45.833 0.00 0.00 45.71 3.01
1598 4624 4.282195 GCATAAGCTCCTAGAAGGCTAGAA 59.718 45.833 0.00 0.00 41.20 2.10
1599 4625 3.829601 GCATAAGCTCCTAGAAGGCTAGA 59.170 47.826 0.00 0.00 41.20 2.43
1600 4626 4.186856 GCATAAGCTCCTAGAAGGCTAG 57.813 50.000 0.00 0.00 39.81 3.42
1614 4640 3.060496 CGATCGATCATCACAGCATAAGC 59.940 47.826 24.40 0.00 42.56 3.09
1615 4641 4.479619 TCGATCGATCATCACAGCATAAG 58.520 43.478 24.40 4.21 0.00 1.73
1616 4642 4.022849 ACTCGATCGATCATCACAGCATAA 60.023 41.667 24.40 0.00 0.00 1.90
1617 4643 3.503748 ACTCGATCGATCATCACAGCATA 59.496 43.478 24.40 0.00 0.00 3.14
1621 4647 2.049959 GCACTCGATCGATCATCACAG 58.950 52.381 24.40 13.29 0.00 3.66
1625 4651 2.414058 ACAGCACTCGATCGATCATC 57.586 50.000 24.40 8.34 0.00 2.92
1627 4653 3.990318 AATACAGCACTCGATCGATCA 57.010 42.857 24.40 11.08 0.00 2.92
1629 4655 6.260870 AGATTAATACAGCACTCGATCGAT 57.739 37.500 19.78 4.97 0.00 3.59
1639 4665 8.693120 ACACTACTAGCTAGATTAATACAGCA 57.307 34.615 27.45 7.61 36.47 4.41
1649 4675 9.496873 CAGAATACAGTACACTACTAGCTAGAT 57.503 37.037 27.45 13.50 37.23 1.98
1650 4676 8.484575 ACAGAATACAGTACACTACTAGCTAGA 58.515 37.037 27.45 9.90 37.23 2.43
1651 4677 8.665643 ACAGAATACAGTACACTACTAGCTAG 57.334 38.462 19.44 19.44 37.23 3.42
1653 4679 7.941431 AACAGAATACAGTACACTACTAGCT 57.059 36.000 0.00 0.00 37.23 3.32
1654 4680 9.500864 GTTAACAGAATACAGTACACTACTAGC 57.499 37.037 0.00 0.00 37.23 3.42
1656 4682 8.668353 CGGTTAACAGAATACAGTACACTACTA 58.332 37.037 8.10 0.00 37.23 1.82
1658 4684 6.749118 CCGGTTAACAGAATACAGTACACTAC 59.251 42.308 8.10 0.00 0.00 2.73
1659 4685 6.127647 CCCGGTTAACAGAATACAGTACACTA 60.128 42.308 8.10 0.00 0.00 2.74
1661 4687 4.866486 CCCGGTTAACAGAATACAGTACAC 59.134 45.833 8.10 0.00 0.00 2.90
1662 4688 4.527816 ACCCGGTTAACAGAATACAGTACA 59.472 41.667 8.10 0.00 0.00 2.90
1663 4689 5.077134 ACCCGGTTAACAGAATACAGTAC 57.923 43.478 8.10 0.00 0.00 2.73
1664 4690 6.186957 TCTACCCGGTTAACAGAATACAGTA 58.813 40.000 8.10 0.00 0.00 2.74
1665 4691 5.018809 TCTACCCGGTTAACAGAATACAGT 58.981 41.667 8.10 0.00 0.00 3.55
1666 4692 5.587388 TCTACCCGGTTAACAGAATACAG 57.413 43.478 8.10 0.00 0.00 2.74
1671 4697 4.590222 GGGATATCTACCCGGTTAACAGAA 59.410 45.833 8.10 0.00 37.85 3.02
1673 4699 4.532314 GGGATATCTACCCGGTTAACAG 57.468 50.000 8.10 2.98 37.85 3.16
1683 4709 5.747342 ACTAGTCGATGAGGGATATCTACC 58.253 45.833 2.05 0.00 0.00 3.18
1684 4710 7.558604 AGTACTAGTCGATGAGGGATATCTAC 58.441 42.308 0.00 0.00 0.00 2.59
1685 4711 7.736881 AGTACTAGTCGATGAGGGATATCTA 57.263 40.000 0.00 0.00 0.00 1.98
1686 4712 6.630203 AGTACTAGTCGATGAGGGATATCT 57.370 41.667 0.00 0.00 0.00 1.98
1687 4713 6.094325 CCAAGTACTAGTCGATGAGGGATATC 59.906 46.154 0.00 0.00 0.00 1.63
1688 4714 5.946972 CCAAGTACTAGTCGATGAGGGATAT 59.053 44.000 0.00 0.00 0.00 1.63
1689 4715 5.163120 ACCAAGTACTAGTCGATGAGGGATA 60.163 44.000 0.00 0.00 0.00 2.59
1690 4716 4.145807 CCAAGTACTAGTCGATGAGGGAT 58.854 47.826 0.00 0.00 0.00 3.85
1691 4717 3.053842 ACCAAGTACTAGTCGATGAGGGA 60.054 47.826 0.00 0.00 0.00 4.20
1692 4718 3.288964 ACCAAGTACTAGTCGATGAGGG 58.711 50.000 0.00 0.00 0.00 4.30
1693 4719 4.985538 AACCAAGTACTAGTCGATGAGG 57.014 45.455 0.00 0.00 0.00 3.86
1694 4720 5.029014 CGAAACCAAGTACTAGTCGATGAG 58.971 45.833 0.00 0.00 0.00 2.90
1695 4721 4.696877 TCGAAACCAAGTACTAGTCGATGA 59.303 41.667 0.00 0.00 31.66 2.92
1696 4722 4.792189 GTCGAAACCAAGTACTAGTCGATG 59.208 45.833 15.02 0.00 38.20 3.84
1697 4723 4.699257 AGTCGAAACCAAGTACTAGTCGAT 59.301 41.667 15.02 6.32 38.20 3.59
1698 4724 4.067896 AGTCGAAACCAAGTACTAGTCGA 58.932 43.478 0.00 4.13 33.99 4.20
1699 4725 4.401714 GAGTCGAAACCAAGTACTAGTCG 58.598 47.826 0.00 1.68 0.00 4.18
1700 4726 4.458642 AGGAGTCGAAACCAAGTACTAGTC 59.541 45.833 0.00 0.00 0.00 2.59
1701 4727 4.217983 CAGGAGTCGAAACCAAGTACTAGT 59.782 45.833 0.00 0.00 0.00 2.57
1702 4728 4.458295 TCAGGAGTCGAAACCAAGTACTAG 59.542 45.833 10.95 0.00 0.00 2.57
1703 4729 4.401022 TCAGGAGTCGAAACCAAGTACTA 58.599 43.478 10.95 0.00 0.00 1.82
1704 4730 3.228453 TCAGGAGTCGAAACCAAGTACT 58.772 45.455 10.95 0.00 0.00 2.73
1705 4731 3.655276 TCAGGAGTCGAAACCAAGTAC 57.345 47.619 10.95 0.00 0.00 2.73
1706 4732 4.374399 GTTTCAGGAGTCGAAACCAAGTA 58.626 43.478 10.79 0.00 44.14 2.24
1707 4733 3.203716 GTTTCAGGAGTCGAAACCAAGT 58.796 45.455 10.79 0.00 44.14 3.16
1708 4734 3.879932 GTTTCAGGAGTCGAAACCAAG 57.120 47.619 10.79 4.28 44.14 3.61
1721 4747 3.443681 ACGATAAAAGGCCATGTTTCAGG 59.556 43.478 5.01 0.00 0.00 3.86
1730 4756 5.476091 AATTTTTGGACGATAAAAGGCCA 57.524 34.783 5.01 0.00 46.87 5.36
1731 4757 7.892778 TTAAATTTTTGGACGATAAAAGGCC 57.107 32.000 0.00 0.00 37.28 5.19
1753 4782 5.702209 GGATCGTCCAGTTTACACCTTTTTA 59.298 40.000 0.00 0.00 36.28 1.52
1760 4789 2.993899 CACAGGATCGTCCAGTTTACAC 59.006 50.000 6.78 0.00 39.61 2.90
1781 4810 5.629079 AACAGCTAACAGATTAAAGCACC 57.371 39.130 0.00 0.00 37.44 5.01
1782 4811 9.626045 AATAAAACAGCTAACAGATTAAAGCAC 57.374 29.630 0.00 0.00 37.44 4.40
1797 4826 9.573133 GAAGCATACAACATAAATAAAACAGCT 57.427 29.630 0.00 0.00 0.00 4.24
1798 4827 9.352784 TGAAGCATACAACATAAATAAAACAGC 57.647 29.630 0.00 0.00 0.00 4.40
1804 4833 9.853555 CCAAACTGAAGCATACAACATAAATAA 57.146 29.630 0.00 0.00 0.00 1.40
1806 4835 7.895759 ACCAAACTGAAGCATACAACATAAAT 58.104 30.769 0.00 0.00 0.00 1.40
1807 4836 7.283625 ACCAAACTGAAGCATACAACATAAA 57.716 32.000 0.00 0.00 0.00 1.40
1810 4839 6.625740 GCATACCAAACTGAAGCATACAACAT 60.626 38.462 0.00 0.00 0.00 2.71
1812 4841 5.095490 GCATACCAAACTGAAGCATACAAC 58.905 41.667 0.00 0.00 0.00 3.32
1813 4842 5.009631 AGCATACCAAACTGAAGCATACAA 58.990 37.500 0.00 0.00 0.00 2.41
1815 4844 4.635765 TGAGCATACCAAACTGAAGCATAC 59.364 41.667 0.00 0.00 0.00 2.39
1816 4845 4.842574 TGAGCATACCAAACTGAAGCATA 58.157 39.130 0.00 0.00 0.00 3.14
1839 4921 5.583854 AGTTGATCAATCATGTACAGAGTGC 59.416 40.000 12.12 6.00 36.56 4.40
1844 4926 7.838771 TCTGAAGTTGATCAATCATGTACAG 57.161 36.000 12.12 13.27 36.56 2.74
1875 4974 3.627577 CGATTACAGGCTAAAACCAGCAT 59.372 43.478 0.00 0.00 43.67 3.79
1876 4975 3.006940 CGATTACAGGCTAAAACCAGCA 58.993 45.455 0.00 0.00 43.67 4.41
1897 4996 3.031495 ATGCATGCATGAGAGCGC 58.969 55.556 31.74 14.03 37.31 5.92
1916 5031 5.284079 CCTTCCTTGTCTGAAAAACACATG 58.716 41.667 0.00 0.00 0.00 3.21
1917 5032 4.342092 CCCTTCCTTGTCTGAAAAACACAT 59.658 41.667 0.00 0.00 0.00 3.21
1918 5033 3.699038 CCCTTCCTTGTCTGAAAAACACA 59.301 43.478 0.00 0.00 0.00 3.72
1919 5034 3.951680 TCCCTTCCTTGTCTGAAAAACAC 59.048 43.478 0.00 0.00 0.00 3.32
1938 5053 3.141767 AGGTTTTACTCTGCACTTCCC 57.858 47.619 0.00 0.00 0.00 3.97
1951 5069 6.939730 TGCATCAGTGTAATCTGAAGGTTTTA 59.060 34.615 0.62 0.00 45.65 1.52
1957 5075 6.536224 TGTACATGCATCAGTGTAATCTGAAG 59.464 38.462 0.00 0.00 45.65 3.02
2105 5482 1.407989 GCTCCTCCTTGTTGATCCAGG 60.408 57.143 0.00 0.00 0.00 4.45
2164 5543 5.940192 TTCTGCAAGTCGAACATGTAAAT 57.060 34.783 0.00 0.00 33.76 1.40
2223 5602 9.546428 TGAATAGTACATGGAAGAACATACATG 57.454 33.333 0.00 0.00 44.61 3.21
2225 5604 9.599866 CTTGAATAGTACATGGAAGAACATACA 57.400 33.333 0.00 0.00 0.00 2.29
2226 5605 8.552034 GCTTGAATAGTACATGGAAGAACATAC 58.448 37.037 0.00 0.00 0.00 2.39
2227 5606 8.486210 AGCTTGAATAGTACATGGAAGAACATA 58.514 33.333 0.00 0.00 0.00 2.29
2228 5607 7.341805 AGCTTGAATAGTACATGGAAGAACAT 58.658 34.615 0.00 0.00 0.00 2.71
2229 5608 6.711277 AGCTTGAATAGTACATGGAAGAACA 58.289 36.000 0.00 0.00 0.00 3.18
2230 5609 7.010923 CAGAGCTTGAATAGTACATGGAAGAAC 59.989 40.741 0.00 0.00 0.00 3.01
2231 5610 7.044181 CAGAGCTTGAATAGTACATGGAAGAA 58.956 38.462 0.00 0.00 0.00 2.52
2232 5611 6.381133 TCAGAGCTTGAATAGTACATGGAAGA 59.619 38.462 0.00 0.00 31.34 2.87
2233 5612 6.577103 TCAGAGCTTGAATAGTACATGGAAG 58.423 40.000 0.00 0.00 31.34 3.46
2275 5657 6.038603 CCATATTCCTGTACTTGAACATGTGG 59.961 42.308 0.00 0.00 0.00 4.17
2305 5687 1.374252 AGGTGCGGTTTGAGCGTAG 60.374 57.895 1.44 0.00 41.74 3.51
2346 5729 1.661341 GATCCAGGATGTGTGCAGTC 58.339 55.000 6.70 0.00 0.00 3.51
2350 5733 0.543277 TGAGGATCCAGGATGTGTGC 59.457 55.000 15.82 0.00 0.00 4.57
2355 5742 3.392285 TGGTAATGTGAGGATCCAGGATG 59.608 47.826 15.82 0.00 0.00 3.51
2394 5913 1.780860 GCGTGTGCTAGCAAGTTTTTG 59.219 47.619 21.29 6.49 38.39 2.44
2442 5962 6.779860 ACATAGTTGGGACATGAAAAGTAGT 58.220 36.000 0.00 0.00 39.30 2.73
2450 5974 9.913310 TCAAATTATTACATAGTTGGGACATGA 57.087 29.630 0.00 0.00 39.30 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.