AutoCloner

Multiple sequence alignment - TraesCS5A01G034000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G034000	chr5A	100.000	2642	0	0	1	2642	30708025	30710666	0.000000e+00	4879.0
1	TraesCS5A01G034000	chr5A	98.771	1709	10	1	711	2408	32129126	32127418	0.000000e+00	3029.0
2	TraesCS5A01G034000	chr5A	80.000	825	104	30	997	1812	31282108	31281336	1.070000e-153	553.0
3	TraesCS5A01G034000	chr5A	99.145	234	2	0	2409	2642	32126244	32126011	3.140000e-114	422.0
4	TraesCS5A01G034000	chr5A	89.181	342	30	6	1	337	32142817	32142478	1.130000e-113	420.0
5	TraesCS5A01G034000	chr5A	89.157	249	24	2	1424	1669	31212698	31212946	9.190000e-80	307.0
6	TraesCS5A01G034000	chr5A	83.513	279	31	9	893	1165	31212312	31212581	2.030000e-61	246.0
7	TraesCS5A01G034000	chr5A	82.955	264	20	16	448	699	32129473	32129223	5.730000e-52	215.0
8	TraesCS5A01G034000	chr5A	81.221	213	16	9	893	1104	30842113	30841924	1.640000e-32	150.0
9	TraesCS5A01G034000	chr5A	82.734	139	21	1	1306	1441	32190294	32190432	1.280000e-23	121.0
10	TraesCS5A01G034000	chr5A	100.000	36	0	0	1830	1865	31213098	31213133	1.700000e-07	67.6
11	TraesCS5A01G034000	chr5A	87.097	62	3	2	1824	1880	31281282	31281221	6.100000e-07	65.8
12	TraesCS5A01G034000	chr5B	88.202	1780	90	54	436	2168	37656583	37658289	0.000000e+00	2013.0
13	TraesCS5A01G034000	chr5B	90.376	1143	49	17	713	1819	38636359	38635242	0.000000e+00	1445.0
14	TraesCS5A01G034000	chr5B	89.163	729	45	14	893	1597	37098976	37099694	0.000000e+00	878.0
15	TraesCS5A01G034000	chr5B	93.810	517	15	4	1824	2327	38635190	38634678	0.000000e+00	761.0
16	TraesCS5A01G034000	chr5B	90.868	438	32	4	2	431	37649750	37650187	4.900000e-162	580.0
17	TraesCS5A01G034000	chr5B	84.461	547	38	24	1824	2327	37106678	37107220	1.830000e-136	496.0
18	TraesCS5A01G034000	chr5B	81.284	545	66	17	1307	1817	38610912	38610370	2.450000e-110	409.0
19	TraesCS5A01G034000	chr5B	94.677	263	9	3	436	697	38636836	38636578	1.140000e-108	403.0
20	TraesCS5A01G034000	chr5B	95.982	224	9	0	2409	2632	37659659	37659882	5.370000e-97	364.0
21	TraesCS5A01G034000	chr5B	95.946	222	9	0	2411	2632	38633830	38633609	6.950000e-96	361.0
22	TraesCS5A01G034000	chr5B	92.641	231	15	2	2410	2639	37108225	37108454	5.450000e-87	331.0
23	TraesCS5A01G034000	chr5B	96.721	183	6	0	1	183	37650644	37650826	3.300000e-79	305.0
24	TraesCS5A01G034000	chr5B	78.032	569	65	22	1307	1817	37699389	37699955	1.190000e-78	303.0
25	TraesCS5A01G034000	chr5B	97.688	173	4	0	259	431	38643622	38643450	5.530000e-77	298.0
26	TraesCS5A01G034000	chr5B	94.886	176	6	2	259	431	37650823	37650998	3.350000e-69	272.0
27	TraesCS5A01G034000	chr5B	96.341	164	6	0	2164	2327	37658448	37658611	1.210000e-68	270.0
28	TraesCS5A01G034000	chr5B	77.470	506	55	38	1824	2296	37713895	37714374	5.650000e-62	248.0
29	TraesCS5A01G034000	chr5B	77.075	506	58	38	1824	2296	37700106	37700586	3.400000e-59	239.0
30	TraesCS5A01G034000	chr5B	100.000	76	0	0	108	183	38643694	38643619	9.860000e-30	141.0
31	TraesCS5A01G034000	chr5B	87.288	118	13	2	2180	2295	38607821	38607704	1.650000e-27	134.0
32	TraesCS5A01G034000	chr5B	95.122	82	4	0	2327	2408	37658639	37658720	2.130000e-26	130.0
33	TraesCS5A01G034000	chr5B	95.122	82	4	0	2327	2408	38634650	38634569	2.130000e-26	130.0
34	TraesCS5A01G034000	chr5D	88.868	521	12	10	1934	2415	43005488	43004975	1.350000e-167	599.0
35	TraesCS5A01G034000	chr5D	95.876	291	12	0	1529	1819	43009665	43009375	3.080000e-129	472.0
36	TraesCS5A01G034000	chr5D	89.535	344	26	7	1	337	43039210	43038870	6.760000e-116	427.0
37	TraesCS5A01G034000	chr5D	97.447	235	5	1	2409	2642	43003592	43003358	1.470000e-107	399.0
38	TraesCS5A01G034000	chr5D	97.391	115	3	0	1824	1938	43009323	43009209	2.070000e-46	196.0
39	TraesCS5A01G034000	chr1D	87.234	235	25	4	97	327	411512261	411512494	2.020000e-66	263.0
40	TraesCS5A01G034000	chr2B	80.426	235	39	7	1396	1627	170953985	170953755	3.500000e-39	172.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G034000	chr5A	30708025	30710666	2641	False	4879.000000	4879	100.000000	1	2642	1	chr5A.!!$F1	2641
1	TraesCS5A01G034000	chr5A	32126011	32129473	3462	True	1222.000000	3029	93.623667	448	2642	3	chr5A.!!$R4	2194
2	TraesCS5A01G034000	chr5A	31281221	31282108	887	True	309.400000	553	83.548500	997	1880	2	chr5A.!!$R3	883
3	TraesCS5A01G034000	chr5A	31212312	31213133	821	False	206.866667	307	90.890000	893	1865	3	chr5A.!!$F3	972
4	TraesCS5A01G034000	chr5B	37098976	37099694	718	False	878.000000	878	89.163000	893	1597	1	chr5B.!!$F1	704
5	TraesCS5A01G034000	chr5B	37656583	37659882	3299	False	694.250000	2013	93.911750	436	2632	4	chr5B.!!$F5	2196
6	TraesCS5A01G034000	chr5B	38633609	38636836	3227	True	620.000000	1445	93.986200	436	2632	5	chr5B.!!$R2	2196
7	TraesCS5A01G034000	chr5B	37106678	37108454	1776	False	413.500000	496	88.551000	1824	2639	2	chr5B.!!$F3	815
8	TraesCS5A01G034000	chr5B	37649750	37650998	1248	False	385.666667	580	94.158333	1	431	3	chr5B.!!$F4	430
9	TraesCS5A01G034000	chr5B	38607704	38610912	3208	True	271.500000	409	84.286000	1307	2295	2	chr5B.!!$R1	988
10	TraesCS5A01G034000	chr5B	37699389	37700586	1197	False	271.000000	303	77.553500	1307	2296	2	chr5B.!!$F6	989
11	TraesCS5A01G034000	chr5D	43003358	43009665	6307	True	416.500000	599	94.895500	1529	2642	4	chr5D.!!$R2	1113

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
668	1512	0.03779	GTCACTGCCACTCACTCTCC	60.038	60.0	0.0	0.0	0.0	3.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2057	7278	0.958382	TCCAAAAATCCGGCCTGACG	60.958	55.0	0.0	0.0	0.0	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	41	7.482654	TTTTCTCGCCAAAGATATATGTGAG	57.517	36.000	0.00	0.00	0.00	3.51
52	55	2.446341	GTGAGTGGCACTAGTTCGC	58.554	57.895	22.11	11.23	44.27	4.70
66	69	7.640240	GGCACTAGTTCGCTAATTAATTTCAAG	59.360	37.037	5.91	0.00	0.00	3.02
94	100	8.940952	AGAAAGACGAAGAGAAATAAGGATTTG	58.059	33.333	0.00	0.00	35.33	2.32
105	111	2.124278	GGATTTGGGACGGGAGGC	60.124	66.667	0.00	0.00	0.00	4.70
126	132	0.833949	CTTCCCTTCCCTAGCTGGTC	59.166	60.000	0.00	0.00	0.00	4.02
142	148	1.730064	TGGTCGATTTTCAACTAGCGC	59.270	47.619	0.00	0.00	0.00	5.92
143	149	1.730064	GGTCGATTTTCAACTAGCGCA	59.270	47.619	11.47	0.00	0.00	6.09
145	151	3.345714	GTCGATTTTCAACTAGCGCATG	58.654	45.455	11.47	3.75	0.00	4.06
147	153	3.093574	CGATTTTCAACTAGCGCATGTG	58.906	45.455	11.47	0.66	0.00	3.21
158	164	2.009774	AGCGCATGTGATTTCCAGTAC	58.990	47.619	11.47	0.00	0.00	2.73
165	171	5.436175	CATGTGATTTCCAGTACCATACCA	58.564	41.667	0.00	0.00	0.00	3.25
188	194	2.009774	GCATGCACCACTCTTAACGAT	58.990	47.619	14.21	0.00	0.00	3.73
189	195	2.223112	GCATGCACCACTCTTAACGATG	60.223	50.000	14.21	0.00	0.00	3.84
214	220	1.425066	GGGGGTGGCTCATCAATCATA	59.575	52.381	0.00	0.00	0.00	2.15
234	240	7.530426	TCATATTGATCAGCTAGCTTCTACA	57.470	36.000	16.46	10.29	0.00	2.74
329	1149	8.079809	TGCAACCTTAACTTTGAGTTAATTAGC	58.920	33.333	12.22	13.26	46.10	3.09
373	1193	1.178534	AAAATGGGTGGTGGTGCTCG	61.179	55.000	0.00	0.00	0.00	5.03
419	1239	5.599715	CCATCGTTATCTAATCGAAAAGCG	58.400	41.667	0.00	0.00	42.69	4.68
431	1251	4.545823	TCGAAAAGCGTGTCAAAAGAAT	57.454	36.364	0.00	0.00	41.80	2.40
432	1252	5.660629	TCGAAAAGCGTGTCAAAAGAATA	57.339	34.783	0.00	0.00	41.80	1.75
433	1253	6.236017	TCGAAAAGCGTGTCAAAAGAATAT	57.764	33.333	0.00	0.00	41.80	1.28
434	1254	6.077197	TCGAAAAGCGTGTCAAAAGAATATG	58.923	36.000	0.00	0.00	41.80	1.78
662	1506	2.099405	TCATATCGTCACTGCCACTCA	58.901	47.619	0.00	0.00	0.00	3.41
663	1507	2.159240	TCATATCGTCACTGCCACTCAC	60.159	50.000	0.00	0.00	0.00	3.51
664	1508	1.545841	TATCGTCACTGCCACTCACT	58.454	50.000	0.00	0.00	0.00	3.41
665	1509	0.244994	ATCGTCACTGCCACTCACTC	59.755	55.000	0.00	0.00	0.00	3.51
666	1510	0.823769	TCGTCACTGCCACTCACTCT	60.824	55.000	0.00	0.00	0.00	3.24
667	1511	0.387878	CGTCACTGCCACTCACTCTC	60.388	60.000	0.00	0.00	0.00	3.20
668	1512	0.037790	GTCACTGCCACTCACTCTCC	60.038	60.000	0.00	0.00	0.00	3.71
669	1513	0.178950	TCACTGCCACTCACTCTCCT	60.179	55.000	0.00	0.00	0.00	3.69
670	1514	0.246086	CACTGCCACTCACTCTCCTC	59.754	60.000	0.00	0.00	0.00	3.71
671	1515	0.114168	ACTGCCACTCACTCTCCTCT	59.886	55.000	0.00	0.00	0.00	3.69
672	1516	0.817013	CTGCCACTCACTCTCCTCTC	59.183	60.000	0.00	0.00	0.00	3.20
673	1517	0.113190	TGCCACTCACTCTCCTCTCA	59.887	55.000	0.00	0.00	0.00	3.27
674	1518	0.530288	GCCACTCACTCTCCTCTCAC	59.470	60.000	0.00	0.00	0.00	3.51
675	1519	1.890573	GCCACTCACTCTCCTCTCACT	60.891	57.143	0.00	0.00	0.00	3.41
676	1520	2.091541	CCACTCACTCTCCTCTCACTC	58.908	57.143	0.00	0.00	0.00	3.51
677	1521	2.290896	CCACTCACTCTCCTCTCACTCT	60.291	54.545	0.00	0.00	0.00	3.24
678	1522	3.009723	CACTCACTCTCCTCTCACTCTC	58.990	54.545	0.00	0.00	0.00	3.20
679	1523	2.912956	ACTCACTCTCCTCTCACTCTCT	59.087	50.000	0.00	0.00	0.00	3.10
680	1524	3.055094	ACTCACTCTCCTCTCACTCTCTC	60.055	52.174	0.00	0.00	0.00	3.20
681	1525	3.181329	TCACTCTCCTCTCACTCTCTCT	58.819	50.000	0.00	0.00	0.00	3.10
682	1526	3.197766	TCACTCTCCTCTCACTCTCTCTC	59.802	52.174	0.00	0.00	0.00	3.20
683	1527	3.198635	CACTCTCCTCTCACTCTCTCTCT	59.801	52.174	0.00	0.00	0.00	3.10
684	1528	3.452627	ACTCTCCTCTCACTCTCTCTCTC	59.547	52.174	0.00	0.00	0.00	3.20
685	1529	3.708631	CTCTCCTCTCACTCTCTCTCTCT	59.291	52.174	0.00	0.00	0.00	3.10
686	1530	3.706594	TCTCCTCTCACTCTCTCTCTCTC	59.293	52.174	0.00	0.00	0.00	3.20
687	1531	3.708631	CTCCTCTCACTCTCTCTCTCTCT	59.291	52.174	0.00	0.00	0.00	3.10
688	1532	3.706594	TCCTCTCACTCTCTCTCTCTCTC	59.293	52.174	0.00	0.00	0.00	3.20
689	1533	3.708631	CCTCTCACTCTCTCTCTCTCTCT	59.291	52.174	0.00	0.00	0.00	3.10
690	1534	4.202202	CCTCTCACTCTCTCTCTCTCTCTC	60.202	54.167	0.00	0.00	0.00	3.20
691	1535	4.614475	TCTCACTCTCTCTCTCTCTCTCT	58.386	47.826	0.00	0.00	0.00	3.10
692	1536	4.646945	TCTCACTCTCTCTCTCTCTCTCTC	59.353	50.000	0.00	0.00	0.00	3.20
930	2050	6.332630	TCTTTCTTCTTGTTTCTTTTGCAGG	58.667	36.000	0.00	0.00	0.00	4.85
2057	7278	0.249911	AGCCGTGACCTGTGAGTTTC	60.250	55.000	0.00	0.00	0.00	2.78

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	6.235664	TGGCGAGAAAATTAAACTAGGAACT	58.764	36.000	0.00	0.00	46.37	3.01
1	2	6.490566	TGGCGAGAAAATTAAACTAGGAAC	57.509	37.500	0.00	0.00	0.00	3.62
38	41	5.986004	ATTAATTAGCGAACTAGTGCCAC	57.014	39.130	0.00	0.00	0.00	5.01
66	69	8.710835	ATCCTTATTTCTCTTCGTCTTTCTTC	57.289	34.615	0.00	0.00	0.00	2.87
75	78	5.006746	CGTCCCAAATCCTTATTTCTCTTCG	59.993	44.000	0.00	0.00	32.87	3.79
105	111	1.144936	CAGCTAGGGAAGGGAAGCG	59.855	63.158	0.00	0.00	39.94	4.68
126	132	3.093574	CACATGCGCTAGTTGAAAATCG	58.906	45.455	9.73	0.00	0.00	3.34
142	148	5.436175	TGGTATGGTACTGGAAATCACATG	58.564	41.667	0.00	0.00	0.00	3.21
143	149	5.708736	TGGTATGGTACTGGAAATCACAT	57.291	39.130	0.00	0.00	0.00	3.21
145	151	5.221048	GCATTGGTATGGTACTGGAAATCAC	60.221	44.000	0.00	0.00	32.15	3.06
147	153	4.887071	TGCATTGGTATGGTACTGGAAATC	59.113	41.667	0.00	0.00	32.15	2.17
158	164	1.112950	TGGTGCATGCATTGGTATGG	58.887	50.000	25.64	0.00	37.56	2.74
165	171	2.162208	CGTTAAGAGTGGTGCATGCATT	59.838	45.455	25.64	15.17	0.00	3.56
214	220	5.982356	TGTTGTAGAAGCTAGCTGATCAAT	58.018	37.500	20.16	0.00	0.00	2.57
234	240	7.989416	AATCAAATGATTCAGCCAAAATGTT	57.011	28.000	2.83	0.00	40.49	2.71
293	301	7.593273	TCAAAGTTAAGGTTGCATTATTTGACG	59.407	33.333	0.00	0.00	31.31	4.35
296	304	8.816640	ACTCAAAGTTAAGGTTGCATTATTTG	57.183	30.769	0.00	0.00	0.00	2.32
373	1193	5.163612	GGCAAAATGACCATCTAGACCTTTC	60.164	44.000	0.00	0.00	0.00	2.62
400	1220	5.004061	TGACACGCTTTTCGATTAGATAACG	59.996	40.000	0.00	0.00	41.67	3.18
419	1239	5.182001	AGTGTGGCTCATATTCTTTTGACAC	59.818	40.000	0.00	0.00	0.00	3.67
431	1251	4.606210	TGAACTAGGTAGTGTGGCTCATA	58.394	43.478	0.00	0.00	36.50	2.15
432	1252	3.441101	TGAACTAGGTAGTGTGGCTCAT	58.559	45.455	0.00	0.00	36.50	2.90
433	1253	2.884320	TGAACTAGGTAGTGTGGCTCA	58.116	47.619	0.00	0.00	36.50	4.26
434	1254	3.955650	TTGAACTAGGTAGTGTGGCTC	57.044	47.619	0.00	0.00	36.50	4.70
561	1383	2.100584	TGGCAAAGCGTCATTTCTTTGT	59.899	40.909	13.89	0.00	46.47	2.83
662	1506	3.452627	GAGAGAGAGAGTGAGAGGAGAGT	59.547	52.174	0.00	0.00	0.00	3.24
663	1507	3.708631	AGAGAGAGAGAGTGAGAGGAGAG	59.291	52.174	0.00	0.00	0.00	3.20
664	1508	3.706594	GAGAGAGAGAGAGTGAGAGGAGA	59.293	52.174	0.00	0.00	0.00	3.71
665	1509	3.708631	AGAGAGAGAGAGAGTGAGAGGAG	59.291	52.174	0.00	0.00	0.00	3.69
666	1510	3.706594	GAGAGAGAGAGAGAGTGAGAGGA	59.293	52.174	0.00	0.00	0.00	3.71
667	1511	3.708631	AGAGAGAGAGAGAGAGTGAGAGG	59.291	52.174	0.00	0.00	0.00	3.69
668	1512	4.648762	AGAGAGAGAGAGAGAGAGTGAGAG	59.351	50.000	0.00	0.00	0.00	3.20
669	1513	4.614475	AGAGAGAGAGAGAGAGAGTGAGA	58.386	47.826	0.00	0.00	0.00	3.27
670	1514	4.648762	AGAGAGAGAGAGAGAGAGAGTGAG	59.351	50.000	0.00	0.00	0.00	3.51
671	1515	4.614475	AGAGAGAGAGAGAGAGAGAGTGA	58.386	47.826	0.00	0.00	0.00	3.41
672	1516	4.648762	AGAGAGAGAGAGAGAGAGAGAGTG	59.351	50.000	0.00	0.00	0.00	3.51
673	1517	4.877773	AGAGAGAGAGAGAGAGAGAGAGT	58.122	47.826	0.00	0.00	0.00	3.24
674	1518	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
675	1519	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
676	1520	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
677	1521	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
678	1522	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
679	1523	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
680	1524	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
681	1525	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
682	1526	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
683	1527	5.103728	AGAGAGAGAGAGAGAGAGAGAGAGA	60.104	48.000	0.00	0.00	0.00	3.10
684	1528	5.139727	AGAGAGAGAGAGAGAGAGAGAGAG	58.860	50.000	0.00	0.00	0.00	3.20
685	1529	5.136068	AGAGAGAGAGAGAGAGAGAGAGA	57.864	47.826	0.00	0.00	0.00	3.10
686	1530	4.892345	TGAGAGAGAGAGAGAGAGAGAGAG	59.108	50.000	0.00	0.00	0.00	3.20
687	1531	4.871822	TGAGAGAGAGAGAGAGAGAGAGA	58.128	47.826	0.00	0.00	0.00	3.10
688	1532	5.804944	ATGAGAGAGAGAGAGAGAGAGAG	57.195	47.826	0.00	0.00	0.00	3.20
689	1533	5.777223	CCTATGAGAGAGAGAGAGAGAGAGA	59.223	48.000	0.00	0.00	0.00	3.10
690	1534	5.777223	TCCTATGAGAGAGAGAGAGAGAGAG	59.223	48.000	0.00	0.00	0.00	3.20
691	1535	5.715921	TCCTATGAGAGAGAGAGAGAGAGA	58.284	45.833	0.00	0.00	0.00	3.10
692	1536	6.351711	GGATCCTATGAGAGAGAGAGAGAGAG	60.352	50.000	3.84	0.00	0.00	3.20
930	2050	2.099756	AGTTGCTTGTTCAGTTTCCTGC	59.900	45.455	0.00	0.00	38.66	4.85
1157	2298	1.079127	CAGACTTGGTACTGGCCGG	60.079	63.158	11.02	11.02	0.00	6.13
2057	7278	0.958382	TCCAAAAATCCGGCCTGACG	60.958	55.000	0.00	0.00	0.00	4.35
2241	9766	4.373156	AGAGGGTTTGATGTACTTGCTT	57.627	40.909	0.00	0.00	0.00	3.91

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.