Multiple sequence alignment - TraesCS5A01G033200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G033200 chr5A 100.000 4020 0 0 1 4020 30398732 30402751 0.000000e+00 7424.0
1 TraesCS5A01G033200 chr5A 85.822 663 58 18 842 1496 168131588 168130954 0.000000e+00 671.0
2 TraesCS5A01G033200 chr5A 86.279 481 50 10 2196 2676 168129878 168129414 3.580000e-140 508.0
3 TraesCS5A01G033200 chr5A 88.095 420 45 5 2196 2615 168236786 168236372 1.000000e-135 494.0
4 TraesCS5A01G033200 chr5A 84.264 394 28 13 1627 1992 168130549 168130162 1.780000e-93 353.0
5 TraesCS5A01G033200 chr5A 91.304 138 3 5 569 705 30399262 30399391 3.190000e-41 180.0
6 TraesCS5A01G033200 chr5A 91.304 138 3 5 531 660 30399300 30399436 3.190000e-41 180.0
7 TraesCS5A01G033200 chr5A 91.473 129 9 2 1 127 566178121 566177993 4.130000e-40 176.0
8 TraesCS5A01G033200 chr5A 84.043 94 10 3 3756 3844 108781732 108781825 7.160000e-13 86.1
9 TraesCS5A01G033200 chr5D 88.763 1682 96 52 1987 3618 42010942 42012580 0.000000e+00 1973.0
10 TraesCS5A01G033200 chr5D 89.103 1560 100 41 1987 3500 42056803 42055268 0.000000e+00 1875.0
11 TraesCS5A01G033200 chr5D 89.815 864 57 10 645 1504 42058436 42057600 0.000000e+00 1079.0
12 TraesCS5A01G033200 chr5D 90.729 809 57 9 698 1496 42009225 42010025 0.000000e+00 1062.0
13 TraesCS5A01G033200 chr5D 89.084 513 32 13 1499 1992 42057378 42056871 2.050000e-172 616.0
14 TraesCS5A01G033200 chr5D 86.905 420 50 5 2196 2615 136946115 136946529 2.190000e-127 466.0
15 TraesCS5A01G033200 chr5D 85.861 389 22 14 1624 1992 42010503 42010878 2.270000e-102 383.0
16 TraesCS5A01G033200 chr5D 89.899 198 17 1 2825 3022 136946579 136946773 6.670000e-63 252.0
17 TraesCS5A01G033200 chr5D 90.909 176 14 1 1320 1493 136944684 136944859 6.720000e-58 235.0
18 TraesCS5A01G033200 chr5D 85.321 218 20 3 1625 1830 136945407 136945624 8.750000e-52 215.0
19 TraesCS5A01G033200 chr5D 87.978 183 16 4 405 582 42058562 42058381 1.130000e-50 211.0
20 TraesCS5A01G033200 chr5D 80.690 290 31 9 3746 4020 42012582 42012861 6.810000e-48 202.0
21 TraesCS5A01G033200 chr5D 93.701 127 3 3 128 253 42058850 42058728 6.860000e-43 185.0
22 TraesCS5A01G033200 chr5D 86.364 132 4 6 128 253 42009098 42009221 9.070000e-27 132.0
23 TraesCS5A01G033200 chr5B 88.679 1590 87 53 1987 3524 36695305 36696853 0.000000e+00 1853.0
24 TraesCS5A01G033200 chr5B 88.600 886 61 19 641 1504 36693697 36694564 0.000000e+00 1040.0
25 TraesCS5A01G033200 chr5B 92.328 743 35 11 1984 2717 36775527 36774798 0.000000e+00 1037.0
26 TraesCS5A01G033200 chr5B 87.574 676 40 23 2735 3388 36815979 36815326 0.000000e+00 743.0
27 TraesCS5A01G033200 chr5B 86.878 663 52 18 842 1496 185523859 185524494 0.000000e+00 710.0
28 TraesCS5A01G033200 chr5B 83.357 703 77 21 1999 2695 185534960 185535628 7.380000e-172 614.0
29 TraesCS5A01G033200 chr5B 87.523 545 42 16 641 1177 36660173 36660699 1.240000e-169 606.0
30 TraesCS5A01G033200 chr5B 85.545 505 25 13 1499 1987 36694765 36695237 6.040000e-133 484.0
31 TraesCS5A01G033200 chr5B 91.365 359 23 4 893 1243 36776642 36776284 6.040000e-133 484.0
32 TraesCS5A01G033200 chr5B 91.365 359 23 4 893 1243 36817672 36817314 6.040000e-133 484.0
33 TraesCS5A01G033200 chr5B 86.667 420 51 5 2196 2615 185510809 185511223 1.020000e-125 460.0
34 TraesCS5A01G033200 chr5B 94.118 221 6 3 1282 1496 36776281 36776062 3.000000e-86 329.0
35 TraesCS5A01G033200 chr5B 94.118 221 6 3 1282 1496 36817311 36817092 3.000000e-86 329.0
36 TraesCS5A01G033200 chr5B 94.686 207 2 1 1624 1821 36775963 36775757 3.020000e-81 313.0
37 TraesCS5A01G033200 chr5B 94.686 207 2 1 1624 1821 36816993 36816787 3.020000e-81 313.0
38 TraesCS5A01G033200 chr5B 77.717 552 69 37 2823 3348 185535753 185536276 5.080000e-74 289.0
39 TraesCS5A01G033200 chr5B 82.196 337 27 13 1683 1992 185534557 185534887 3.990000e-65 259.0
40 TraesCS5A01G033200 chr5B 87.391 230 21 4 2798 3022 185511241 185511467 1.430000e-64 257.0
41 TraesCS5A01G033200 chr5B 85.321 218 20 3 1625 1830 185508798 185509015 8.750000e-52 215.0
42 TraesCS5A01G033200 chr5B 80.556 288 31 14 3746 4018 36774155 36773878 8.810000e-47 198.0
43 TraesCS5A01G033200 chr5B 93.701 127 7 1 3617 3743 675066791 675066916 5.300000e-44 189.0
44 TraesCS5A01G033200 chr5B 92.188 128 5 3 128 254 36776793 36776670 4.130000e-40 176.0
45 TraesCS5A01G033200 chr5B 92.188 128 5 3 128 254 36817823 36817700 4.130000e-40 176.0
46 TraesCS5A01G033200 chr5B 85.465 172 10 7 125 289 36659694 36659857 8.940000e-37 165.0
47 TraesCS5A01G033200 chr5B 85.465 172 10 7 125 289 36693218 36693381 8.940000e-37 165.0
48 TraesCS5A01G033200 chr5B 94.030 67 3 1 3746 3811 36696968 36697034 2.560000e-17 100.0
49 TraesCS5A01G033200 chrUn 92.536 844 41 11 1883 2717 65843986 65844816 0.000000e+00 1190.0
50 TraesCS5A01G033200 chrUn 85.466 922 67 38 2735 3618 340277417 340278309 0.000000e+00 898.0
51 TraesCS5A01G033200 chrUn 85.466 922 67 38 2735 3618 340335945 340336837 0.000000e+00 898.0
52 TraesCS5A01G033200 chrUn 88.055 653 48 17 641 1281 337271734 337272368 0.000000e+00 747.0
53 TraesCS5A01G033200 chrUn 91.573 356 22 4 893 1240 65843080 65843435 6.040000e-133 484.0
54 TraesCS5A01G033200 chrUn 94.118 221 6 3 1282 1496 65843441 65843660 3.000000e-86 329.0
55 TraesCS5A01G033200 chrUn 93.722 223 3 2 1619 1830 65843752 65843974 1.390000e-84 324.0
56 TraesCS5A01G033200 chrUn 80.556 288 31 14 3746 4018 340278311 340278588 8.810000e-47 198.0
57 TraesCS5A01G033200 chrUn 80.556 288 30 15 3746 4018 340336839 340337115 8.810000e-47 198.0
58 TraesCS5A01G033200 chrUn 91.603 131 6 3 125 254 65842926 65843052 4.130000e-40 176.0
59 TraesCS5A01G033200 chrUn 85.465 172 10 7 125 289 337271255 337271418 8.940000e-37 165.0
60 TraesCS5A01G033200 chr2A 95.349 129 5 1 1 128 410694904 410694776 1.890000e-48 204.0
61 TraesCS5A01G033200 chr2A 90.625 128 11 1 1 127 614508946 614508819 6.910000e-38 169.0
62 TraesCS5A01G033200 chr2A 96.970 33 0 1 3813 3844 671672788 671672756 2.000000e-03 54.7
63 TraesCS5A01G033200 chr2D 94.030 134 7 1 3610 3743 561025755 561025623 6.810000e-48 202.0
64 TraesCS5A01G033200 chr2D 88.281 128 14 1 7 134 539998713 539998587 6.960000e-33 152.0
65 TraesCS5A01G033200 chr7B 94.531 128 6 1 3616 3743 714743736 714743610 3.170000e-46 196.0
66 TraesCS5A01G033200 chr3D 93.893 131 7 1 3613 3743 280387104 280386975 3.170000e-46 196.0
67 TraesCS5A01G033200 chr3D 93.893 131 7 1 3613 3743 365000827 365000956 3.170000e-46 196.0
68 TraesCS5A01G033200 chr3D 90.076 131 11 2 1 129 91831760 91831890 6.910000e-38 169.0
69 TraesCS5A01G033200 chr7D 93.182 132 8 1 3612 3743 266214249 266214379 4.100000e-45 193.0
70 TraesCS5A01G033200 chr6D 89.610 154 13 3 3608 3760 418599066 418599217 4.100000e-45 193.0
71 TraesCS5A01G033200 chr3B 91.971 137 10 1 3614 3750 741865979 741865844 1.470000e-44 191.0
72 TraesCS5A01G033200 chr6B 89.032 155 11 6 3591 3743 605184923 605184773 1.910000e-43 187.0
73 TraesCS5A01G033200 chr7A 91.270 126 9 2 7 130 578444615 578444490 1.920000e-38 171.0
74 TraesCS5A01G033200 chr6A 90.000 130 10 2 1 127 583130372 583130243 8.940000e-37 165.0
75 TraesCS5A01G033200 chr1A 89.062 128 13 1 1 127 169552577 169552704 1.500000e-34 158.0
76 TraesCS5A01G033200 chr4B 87.143 140 15 3 1 138 517084593 517084731 5.380000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G033200 chr5A 30398732 30402751 4019 False 2594.666667 7424 94.202667 1 4020 3 chr5A.!!$F2 4019
1 TraesCS5A01G033200 chr5A 168129414 168131588 2174 True 510.666667 671 85.455000 842 2676 3 chr5A.!!$R3 1834
2 TraesCS5A01G033200 chr5D 42055268 42058850 3582 True 793.200000 1875 89.936200 128 3500 5 chr5D.!!$R1 3372
3 TraesCS5A01G033200 chr5D 42009098 42012861 3763 False 750.400000 1973 86.481400 128 4020 5 chr5D.!!$F1 3892
4 TraesCS5A01G033200 chr5D 136944684 136946773 2089 False 292.000000 466 88.258500 1320 3022 4 chr5D.!!$F2 1702
5 TraesCS5A01G033200 chr5B 36693218 36697034 3816 False 728.400000 1853 88.463800 125 3811 5 chr5B.!!$F4 3686
6 TraesCS5A01G033200 chr5B 185523859 185524494 635 False 710.000000 710 86.878000 842 1496 1 chr5B.!!$F1 654
7 TraesCS5A01G033200 chr5B 36773878 36776793 2915 True 422.833333 1037 90.873500 128 4018 6 chr5B.!!$R1 3890
8 TraesCS5A01G033200 chr5B 36815326 36817823 2497 True 409.000000 743 91.986200 128 3388 5 chr5B.!!$R2 3260
9 TraesCS5A01G033200 chr5B 185534557 185536276 1719 False 387.333333 614 81.090000 1683 3348 3 chr5B.!!$F6 1665
10 TraesCS5A01G033200 chr5B 36659694 36660699 1005 False 385.500000 606 86.494000 125 1177 2 chr5B.!!$F3 1052
11 TraesCS5A01G033200 chr5B 185508798 185511467 2669 False 310.666667 460 86.459667 1625 3022 3 chr5B.!!$F5 1397
12 TraesCS5A01G033200 chrUn 340277417 340278588 1171 False 548.000000 898 83.011000 2735 4018 2 chrUn.!!$F3 1283
13 TraesCS5A01G033200 chrUn 340335945 340337115 1170 False 548.000000 898 83.011000 2735 4018 2 chrUn.!!$F4 1283
14 TraesCS5A01G033200 chrUn 65842926 65844816 1890 False 500.600000 1190 92.710400 125 2717 5 chrUn.!!$F1 2592
15 TraesCS5A01G033200 chrUn 337271255 337272368 1113 False 456.000000 747 86.760000 125 1281 2 chrUn.!!$F2 1156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 414 0.661187 CATGCCAAACTCGTGCACAC 60.661 55.0 18.64 0.00 37.92 3.82 F
1584 2182 1.172175 TGCACCAATTTATCTGCGCA 58.828 45.0 10.98 10.98 31.96 6.09 F
2032 2912 0.036022 GGAGCTTGTGCAGAAGAGGT 59.964 55.0 26.47 7.40 42.74 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2912 0.833409 TCCTGCTTCAGCTCTGGTGA 60.833 55.0 0.00 0.00 42.66 4.02 R
2941 5267 0.671472 TGAGCAGCATCAACACGAGG 60.671 55.0 0.00 0.00 0.00 4.63 R
3845 6241 0.331616 AGTTCAACCACATAGGGCCC 59.668 55.0 16.46 16.46 43.89 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.678941 TGACGTATCTAATATTGTTGATCTCAC 57.321 33.333 0.00 0.00 0.00 3.51
27 28 9.678941 GACGTATCTAATATTGTTGATCTCACA 57.321 33.333 0.00 0.00 0.00 3.58
75 76 4.547406 ACTTGTTCAAAGTTTACGAGGC 57.453 40.909 9.58 0.00 0.00 4.70
76 77 4.196971 ACTTGTTCAAAGTTTACGAGGCT 58.803 39.130 9.58 0.00 0.00 4.58
77 78 4.638865 ACTTGTTCAAAGTTTACGAGGCTT 59.361 37.500 9.58 0.00 0.00 4.35
78 79 4.545823 TGTTCAAAGTTTACGAGGCTTG 57.454 40.909 0.00 0.00 0.00 4.01
79 80 4.193090 TGTTCAAAGTTTACGAGGCTTGA 58.807 39.130 9.20 0.00 0.00 3.02
80 81 4.034742 TGTTCAAAGTTTACGAGGCTTGAC 59.965 41.667 9.20 0.00 0.00 3.18
81 82 4.067972 TCAAAGTTTACGAGGCTTGACT 57.932 40.909 9.20 0.00 0.00 3.41
82 83 4.448210 TCAAAGTTTACGAGGCTTGACTT 58.552 39.130 9.20 5.14 0.00 3.01
83 84 4.510340 TCAAAGTTTACGAGGCTTGACTTC 59.490 41.667 9.20 0.00 0.00 3.01
84 85 3.746045 AGTTTACGAGGCTTGACTTCA 57.254 42.857 9.20 0.00 0.00 3.02
85 86 3.654414 AGTTTACGAGGCTTGACTTCAG 58.346 45.455 9.20 0.00 0.00 3.02
86 87 3.321111 AGTTTACGAGGCTTGACTTCAGA 59.679 43.478 9.20 0.00 0.00 3.27
87 88 3.299340 TTACGAGGCTTGACTTCAGAC 57.701 47.619 9.20 0.00 0.00 3.51
88 89 1.040646 ACGAGGCTTGACTTCAGACA 58.959 50.000 9.20 0.00 0.00 3.41
89 90 1.412710 ACGAGGCTTGACTTCAGACAA 59.587 47.619 9.20 0.00 0.00 3.18
90 91 2.158957 ACGAGGCTTGACTTCAGACAAA 60.159 45.455 9.20 0.00 30.22 2.83
91 92 3.070018 CGAGGCTTGACTTCAGACAAAT 58.930 45.455 0.00 0.00 30.22 2.32
92 93 3.124297 CGAGGCTTGACTTCAGACAAATC 59.876 47.826 0.00 0.00 30.22 2.17
93 94 4.322567 GAGGCTTGACTTCAGACAAATCT 58.677 43.478 0.00 0.00 34.57 2.40
94 95 4.723309 AGGCTTGACTTCAGACAAATCTT 58.277 39.130 0.00 0.00 30.42 2.40
95 96 5.869579 AGGCTTGACTTCAGACAAATCTTA 58.130 37.500 0.00 0.00 30.42 2.10
96 97 6.479884 AGGCTTGACTTCAGACAAATCTTAT 58.520 36.000 0.00 0.00 30.42 1.73
97 98 7.624549 AGGCTTGACTTCAGACAAATCTTATA 58.375 34.615 0.00 0.00 30.42 0.98
98 99 8.270744 AGGCTTGACTTCAGACAAATCTTATAT 58.729 33.333 0.00 0.00 30.42 0.86
99 100 8.341173 GGCTTGACTTCAGACAAATCTTATATG 58.659 37.037 0.00 0.00 30.42 1.78
100 101 7.854916 GCTTGACTTCAGACAAATCTTATATGC 59.145 37.037 0.00 0.00 30.42 3.14
101 102 8.791327 TTGACTTCAGACAAATCTTATATGCA 57.209 30.769 0.00 0.00 30.42 3.96
102 103 8.791327 TGACTTCAGACAAATCTTATATGCAA 57.209 30.769 0.00 0.00 30.42 4.08
103 104 9.230122 TGACTTCAGACAAATCTTATATGCAAA 57.770 29.630 0.00 0.00 30.42 3.68
104 105 9.495754 GACTTCAGACAAATCTTATATGCAAAC 57.504 33.333 0.00 0.00 30.42 2.93
105 106 9.236006 ACTTCAGACAAATCTTATATGCAAACT 57.764 29.630 0.00 0.00 30.42 2.66
116 117 7.981142 TCTTATATGCAAACTAAAAAGGACCG 58.019 34.615 0.00 0.00 0.00 4.79
117 118 3.934457 ATGCAAACTAAAAAGGACCGG 57.066 42.857 0.00 0.00 0.00 5.28
118 119 2.933573 TGCAAACTAAAAAGGACCGGA 58.066 42.857 9.46 0.00 0.00 5.14
119 120 2.882137 TGCAAACTAAAAAGGACCGGAG 59.118 45.455 9.46 0.00 0.00 4.63
141 142 2.194271 GAGTACATAGCAACGCAGGTC 58.806 52.381 0.00 0.00 0.00 3.85
165 168 1.376609 GGCAGGGAAGCAACATACGG 61.377 60.000 0.00 0.00 35.83 4.02
258 272 0.684805 CCCGCTCCTCTCCTTGTACT 60.685 60.000 0.00 0.00 0.00 2.73
259 273 0.741915 CCGCTCCTCTCCTTGTACTC 59.258 60.000 0.00 0.00 0.00 2.59
260 274 1.464734 CGCTCCTCTCCTTGTACTCA 58.535 55.000 0.00 0.00 0.00 3.41
261 275 1.133407 CGCTCCTCTCCTTGTACTCAC 59.867 57.143 0.00 0.00 0.00 3.51
262 276 2.171840 GCTCCTCTCCTTGTACTCACA 58.828 52.381 0.00 0.00 0.00 3.58
263 277 2.763448 GCTCCTCTCCTTGTACTCACAT 59.237 50.000 0.00 0.00 33.76 3.21
264 278 3.196685 GCTCCTCTCCTTGTACTCACATT 59.803 47.826 0.00 0.00 33.76 2.71
265 279 4.679372 GCTCCTCTCCTTGTACTCACATTC 60.679 50.000 0.00 0.00 33.76 2.67
266 280 4.416516 TCCTCTCCTTGTACTCACATTCA 58.583 43.478 0.00 0.00 33.76 2.57
269 283 5.337894 CCTCTCCTTGTACTCACATTCACAT 60.338 44.000 0.00 0.00 33.76 3.21
291 365 3.857549 TGCATATGCTCTCCGATAGAC 57.142 47.619 27.13 0.00 42.66 2.59
310 384 1.040646 CTAGCTGGTATTCTGGGCGA 58.959 55.000 0.00 0.00 0.00 5.54
340 414 0.661187 CATGCCAAACTCGTGCACAC 60.661 55.000 18.64 0.00 37.92 3.82
354 428 1.557443 GCACACCGAGTTGGACTTCG 61.557 60.000 2.42 0.00 42.00 3.79
367 441 4.115401 TGGACTTCGAGTGAATCTGATG 57.885 45.455 0.00 0.00 32.61 3.07
368 442 3.763897 TGGACTTCGAGTGAATCTGATGA 59.236 43.478 0.00 0.00 32.61 2.92
395 478 8.942338 ATTCAGTTTGGGTTTAGAAAAAGAAC 57.058 30.769 0.00 0.00 0.00 3.01
397 480 5.746721 CAGTTTGGGTTTAGAAAAAGAACCG 59.253 40.000 0.00 0.00 42.91 4.44
411 495 5.376854 AAAGAACCGAATCACTTTCATGG 57.623 39.130 0.00 0.00 33.66 3.66
413 497 3.753272 AGAACCGAATCACTTTCATGGTG 59.247 43.478 0.00 0.00 30.96 4.17
439 523 8.627208 ATTAATCTGATGGACATGTGGTAATC 57.373 34.615 1.15 1.42 0.00 1.75
444 528 7.219322 TCTGATGGACATGTGGTAATCTATTG 58.781 38.462 1.15 0.00 0.00 1.90
475 559 7.375053 TGCTTTGTTATGACATTTTTACTCCC 58.625 34.615 0.00 0.00 35.29 4.30
476 560 6.811665 GCTTTGTTATGACATTTTTACTCCCC 59.188 38.462 0.00 0.00 35.29 4.81
504 588 4.083110 CGAGTGCTCCAAATCATTCAGTTT 60.083 41.667 0.00 0.00 0.00 2.66
506 590 5.075493 AGTGCTCCAAATCATTCAGTTTCT 58.925 37.500 0.00 0.00 0.00 2.52
512 596 6.580788 TCCAAATCATTCAGTTTCTTGCAAA 58.419 32.000 0.00 0.00 0.00 3.68
531 615 4.947645 CAAACTTTGCAGGGATGAAGAAA 58.052 39.130 0.69 0.00 0.00 2.52
533 617 5.397142 AACTTTGCAGGGATGAAGAAATC 57.603 39.130 0.69 0.00 0.00 2.17
534 618 4.410099 ACTTTGCAGGGATGAAGAAATCA 58.590 39.130 0.69 0.00 43.67 2.57
535 619 4.461781 ACTTTGCAGGGATGAAGAAATCAG 59.538 41.667 0.69 0.00 42.53 2.90
536 620 3.726557 TGCAGGGATGAAGAAATCAGT 57.273 42.857 0.00 0.00 42.53 3.41
537 621 3.349927 TGCAGGGATGAAGAAATCAGTG 58.650 45.455 0.00 0.00 42.53 3.66
538 622 3.245016 TGCAGGGATGAAGAAATCAGTGT 60.245 43.478 0.00 0.00 42.53 3.55
539 623 3.128242 GCAGGGATGAAGAAATCAGTGTG 59.872 47.826 0.00 0.00 42.53 3.82
540 624 4.330250 CAGGGATGAAGAAATCAGTGTGT 58.670 43.478 0.00 0.00 42.53 3.72
541 625 4.763793 CAGGGATGAAGAAATCAGTGTGTT 59.236 41.667 0.00 0.00 42.53 3.32
542 626 5.006386 AGGGATGAAGAAATCAGTGTGTTC 58.994 41.667 0.00 0.00 42.53 3.18
543 627 4.761739 GGGATGAAGAAATCAGTGTGTTCA 59.238 41.667 10.00 3.59 42.53 3.18
544 628 5.241506 GGGATGAAGAAATCAGTGTGTTCAA 59.758 40.000 10.00 0.00 42.53 2.69
545 629 6.239008 GGGATGAAGAAATCAGTGTGTTCAAA 60.239 38.462 10.00 0.00 42.53 2.69
546 630 7.373493 GGATGAAGAAATCAGTGTGTTCAAAT 58.627 34.615 10.00 2.70 42.53 2.32
547 631 7.869429 GGATGAAGAAATCAGTGTGTTCAAATT 59.131 33.333 10.00 0.00 42.53 1.82
548 632 9.252962 GATGAAGAAATCAGTGTGTTCAAATTT 57.747 29.630 10.00 0.00 42.53 1.82
549 633 8.410030 TGAAGAAATCAGTGTGTTCAAATTTG 57.590 30.769 12.15 12.15 33.04 2.32
550 634 8.034215 TGAAGAAATCAGTGTGTTCAAATTTGT 58.966 29.630 17.47 0.00 33.04 2.83
551 635 8.776376 AAGAAATCAGTGTGTTCAAATTTGTT 57.224 26.923 17.47 0.40 0.00 2.83
552 636 8.776376 AGAAATCAGTGTGTTCAAATTTGTTT 57.224 26.923 17.47 6.89 0.00 2.83
553 637 9.218440 AGAAATCAGTGTGTTCAAATTTGTTTT 57.782 25.926 17.47 0.00 0.00 2.43
554 638 9.824534 GAAATCAGTGTGTTCAAATTTGTTTTT 57.175 25.926 17.47 4.79 0.00 1.94
579 663 8.522178 TTTTTACGAAAAACAATCAGTGTGTT 57.478 26.923 0.00 0.00 40.60 3.32
580 664 7.728580 TTTACGAAAAACAATCAGTGTGTTC 57.271 32.000 0.06 0.00 40.60 3.18
581 665 5.303747 ACGAAAAACAATCAGTGTGTTCA 57.696 34.783 0.06 0.00 40.60 3.18
582 666 5.704888 ACGAAAAACAATCAGTGTGTTCAA 58.295 33.333 0.06 0.00 40.60 2.69
583 667 6.153067 ACGAAAAACAATCAGTGTGTTCAAA 58.847 32.000 0.06 0.00 40.60 2.69
584 668 6.811170 ACGAAAAACAATCAGTGTGTTCAAAT 59.189 30.769 0.06 0.00 40.60 2.32
585 669 7.330700 ACGAAAAACAATCAGTGTGTTCAAATT 59.669 29.630 0.06 0.00 40.60 1.82
586 670 8.167985 CGAAAAACAATCAGTGTGTTCAAATTT 58.832 29.630 0.06 0.00 40.60 1.82
587 671 9.264782 GAAAAACAATCAGTGTGTTCAAATTTG 57.735 29.630 12.15 12.15 40.60 2.32
588 672 7.903995 AAACAATCAGTGTGTTCAAATTTGT 57.096 28.000 17.47 0.00 40.60 2.83
589 673 7.903995 AACAATCAGTGTGTTCAAATTTGTT 57.096 28.000 17.47 0.00 40.60 2.83
590 674 7.903995 ACAATCAGTGTGTTCAAATTTGTTT 57.096 28.000 17.47 0.00 39.72 2.83
591 675 8.321650 ACAATCAGTGTGTTCAAATTTGTTTT 57.678 26.923 17.47 0.00 39.72 2.43
592 676 8.782144 ACAATCAGTGTGTTCAAATTTGTTTTT 58.218 25.926 17.47 0.00 39.72 1.94
617 701 8.522178 TTTTTACGAAAAACAATCAGTGTGTT 57.478 26.923 0.00 0.00 40.60 3.32
618 702 7.728580 TTTACGAAAAACAATCAGTGTGTTC 57.271 32.000 0.06 0.00 40.60 3.18
619 703 5.303747 ACGAAAAACAATCAGTGTGTTCA 57.696 34.783 0.06 0.00 40.60 3.18
620 704 5.704888 ACGAAAAACAATCAGTGTGTTCAA 58.295 33.333 0.06 0.00 40.60 2.69
621 705 6.153067 ACGAAAAACAATCAGTGTGTTCAAA 58.847 32.000 0.06 0.00 40.60 2.69
622 706 6.811170 ACGAAAAACAATCAGTGTGTTCAAAT 59.189 30.769 0.06 0.00 40.60 2.32
623 707 7.330700 ACGAAAAACAATCAGTGTGTTCAAATT 59.669 29.630 0.06 0.00 40.60 1.82
624 708 8.167985 CGAAAAACAATCAGTGTGTTCAAATTT 58.832 29.630 0.06 0.00 40.60 1.82
625 709 9.264782 GAAAAACAATCAGTGTGTTCAAATTTG 57.735 29.630 12.15 12.15 40.60 2.32
626 710 7.903995 AAACAATCAGTGTGTTCAAATTTGT 57.096 28.000 17.47 0.00 40.60 2.83
627 711 7.903995 AACAATCAGTGTGTTCAAATTTGTT 57.096 28.000 17.47 0.00 40.60 2.83
628 712 7.903995 ACAATCAGTGTGTTCAAATTTGTTT 57.096 28.000 17.47 0.00 39.72 2.83
629 713 8.321650 ACAATCAGTGTGTTCAAATTTGTTTT 57.678 26.923 17.47 0.00 39.72 2.43
630 714 8.782144 ACAATCAGTGTGTTCAAATTTGTTTTT 58.218 25.926 17.47 0.00 39.72 1.94
672 760 8.240682 TCAGTGTGTTCATTTATTTATTTCGGG 58.759 33.333 0.00 0.00 0.00 5.14
707 797 4.761235 AACAATCAGTGTGCTCATTGAG 57.239 40.909 17.25 9.40 42.03 3.02
714 804 2.002586 GTGTGCTCATTGAGTATGCGT 58.997 47.619 14.90 0.00 34.06 5.24
722 812 7.742089 GTGCTCATTGAGTATGCGTAATTAATC 59.258 37.037 14.90 0.00 34.06 1.75
762 854 9.911138 TTGAAAAATCAAATCTCAATCGATGAA 57.089 25.926 0.00 0.00 37.67 2.57
763 855 9.911138 TGAAAAATCAAATCTCAATCGATGAAA 57.089 25.926 0.00 0.00 37.67 2.69
810 905 7.646446 TCACGTGTATCCATAATTAATTCCG 57.354 36.000 16.51 0.00 0.00 4.30
820 915 6.432783 TCCATAATTAATTCCGGATTCGCAAT 59.567 34.615 4.15 0.15 34.56 3.56
823 918 8.664798 CATAATTAATTCCGGATTCGCAATCTA 58.335 33.333 4.15 0.00 38.01 1.98
828 923 4.875544 TCCGGATTCGCAATCTAAAAAG 57.124 40.909 0.00 0.00 38.01 2.27
832 927 5.391523 CCGGATTCGCAATCTAAAAAGTCAA 60.392 40.000 0.00 0.00 38.01 3.18
1017 1132 7.340122 TCTCAAGATGTTCATCGTAGAAGAT 57.660 36.000 7.08 2.87 43.58 2.40
1204 1319 2.564471 CTTGGGGAGAGCAAGCAAG 58.436 57.895 0.00 0.00 0.00 4.01
1227 1342 2.323999 TGCCCAATTTCTTCACCCAT 57.676 45.000 0.00 0.00 0.00 4.00
1240 1355 2.338809 TCACCCATCTCAGTCAGGTTT 58.661 47.619 0.00 0.00 0.00 3.27
1257 1376 6.594159 GTCAGGTTTGCTTAGCTGTCTATAAA 59.406 38.462 5.60 0.00 42.68 1.40
1305 1432 5.587844 GCAACAACTTCCTGATGATACAGAT 59.412 40.000 0.00 0.00 39.94 2.90
1506 2019 8.597662 TGTAATAGGTAAGTTTGTGAACAGAC 57.402 34.615 0.00 0.00 38.26 3.51
1528 2041 5.911752 ACTTGAAGATATGAGTACAGCTGG 58.088 41.667 19.93 0.00 0.00 4.85
1548 2146 8.514594 CAGCTGGTATCTGAAAAAGAACATTTA 58.485 33.333 5.57 0.00 38.79 1.40
1573 2171 5.305139 GTTAACTAAACCGATGCACCAAT 57.695 39.130 0.00 0.00 31.38 3.16
1577 2175 6.524101 AACTAAACCGATGCACCAATTTAT 57.476 33.333 0.00 0.00 0.00 1.40
1581 2179 2.358898 ACCGATGCACCAATTTATCTGC 59.641 45.455 0.00 0.00 0.00 4.26
1582 2180 2.602933 CCGATGCACCAATTTATCTGCG 60.603 50.000 0.00 0.00 31.96 5.18
1583 2181 2.388121 GATGCACCAATTTATCTGCGC 58.612 47.619 0.00 0.00 31.96 6.09
1584 2182 1.172175 TGCACCAATTTATCTGCGCA 58.828 45.000 10.98 10.98 31.96 6.09
1587 2196 2.791004 GCACCAATTTATCTGCGCAATC 59.209 45.455 13.05 0.00 0.00 2.67
1595 2204 2.916702 ATCTGCGCAATCATCCTGTA 57.083 45.000 13.05 0.00 0.00 2.74
1611 2220 5.023533 TCCTGTATCCTCAAAGAATTCCG 57.976 43.478 0.65 0.00 0.00 4.30
1782 2442 8.924511 AATGAAGAGAAACTAAGTGAATCCAA 57.075 30.769 0.00 0.00 0.00 3.53
1851 2520 3.446161 TCCGTCAGACCGAGTCAAATTAT 59.554 43.478 6.78 0.00 34.60 1.28
1852 2521 4.641541 TCCGTCAGACCGAGTCAAATTATA 59.358 41.667 6.78 0.00 34.60 0.98
1856 2532 6.360947 CGTCAGACCGAGTCAAATTATATCAG 59.639 42.308 6.78 0.00 34.60 2.90
1857 2533 6.144724 GTCAGACCGAGTCAAATTATATCAGC 59.855 42.308 6.78 0.00 34.60 4.26
1863 2539 7.600375 ACCGAGTCAAATTATATCAGCTACATG 59.400 37.037 0.00 0.00 0.00 3.21
1865 2541 7.116805 CGAGTCAAATTATATCAGCTACATGCA 59.883 37.037 0.00 0.00 45.94 3.96
1871 2547 7.798596 ATTATATCAGCTACATGCATTAGGC 57.201 36.000 0.00 1.06 45.94 3.93
2032 2912 0.036022 GGAGCTTGTGCAGAAGAGGT 59.964 55.000 26.47 7.40 42.74 3.85
2195 4449 3.023119 TGCAACACCAATGAAGTGAAGT 58.977 40.909 0.00 0.00 38.63 3.01
2196 4450 3.181488 TGCAACACCAATGAAGTGAAGTG 60.181 43.478 0.00 0.00 38.63 3.16
2197 4451 3.066621 GCAACACCAATGAAGTGAAGTGA 59.933 43.478 0.00 0.00 38.63 3.41
2198 4452 4.439974 GCAACACCAATGAAGTGAAGTGAA 60.440 41.667 0.00 0.00 38.63 3.18
2199 4453 5.276270 CAACACCAATGAAGTGAAGTGAAG 58.724 41.667 0.00 0.00 38.63 3.02
2395 4650 2.633481 ACACCGCCTTCTTCTACTTCTT 59.367 45.455 0.00 0.00 0.00 2.52
2424 4679 1.231958 TTTTGTCATCGGTGTCGGGC 61.232 55.000 0.00 0.00 36.95 6.13
2425 4680 2.107041 TTTGTCATCGGTGTCGGGCT 62.107 55.000 0.00 0.00 36.95 5.19
2620 4876 3.843999 TGCTGTTGAGGTTTGTTTGTTC 58.156 40.909 0.00 0.00 0.00 3.18
2633 4889 7.920682 AGGTTTGTTTGTTCAATCAATGTCTAC 59.079 33.333 9.01 5.34 0.00 2.59
2639 4895 8.352942 GTTTGTTCAATCAATGTCTACTCCTTT 58.647 33.333 0.00 0.00 0.00 3.11
2643 4899 9.436957 GTTCAATCAATGTCTACTCCTTTCTTA 57.563 33.333 0.00 0.00 0.00 2.10
2648 4904 9.717942 ATCAATGTCTACTCCTTTCTTATATGC 57.282 33.333 0.00 0.00 0.00 3.14
2649 4905 8.704668 TCAATGTCTACTCCTTTCTTATATGCA 58.295 33.333 0.00 0.00 0.00 3.96
2812 5118 6.077322 AGAAGGATATTCAGAGAGAAGAGGG 58.923 44.000 0.00 0.00 40.15 4.30
2899 5225 1.452651 ATTCTGGGGCATCGTGCTG 60.453 57.895 9.31 0.00 44.28 4.41
2941 5267 3.357240 CGTCGAAGAAAACGTACACTCTC 59.643 47.826 0.00 0.00 39.69 3.20
3003 5329 1.078918 TCATGGCTTCAGCAGGTCG 60.079 57.895 0.30 0.00 44.36 4.79
3008 5334 2.435586 CTTCAGCAGGTCGCAGGG 60.436 66.667 0.00 0.00 46.13 4.45
3009 5335 4.704833 TTCAGCAGGTCGCAGGGC 62.705 66.667 0.00 0.00 46.13 5.19
3043 5378 2.645838 TCTGGGGCATCTTGCTATTC 57.354 50.000 0.00 0.00 44.28 1.75
3094 5429 0.808755 TCGTCGAGTTCATGCTGCTA 59.191 50.000 0.00 0.00 0.00 3.49
3129 5478 2.203480 TGGGCCTGTGGTCAAAGC 60.203 61.111 4.53 0.00 0.00 3.51
3132 5481 3.365265 GCCTGTGGTCAAAGCCGG 61.365 66.667 0.00 0.00 0.00 6.13
3155 5509 1.496060 AAGTGATCGGCTGTCCCATA 58.504 50.000 0.00 0.00 0.00 2.74
3250 5623 3.159213 AGGCAAGTGACATTGATCCAA 57.841 42.857 0.00 0.00 31.55 3.53
3252 5625 2.821969 GGCAAGTGACATTGATCCAACT 59.178 45.455 0.00 0.00 31.55 3.16
3315 5688 4.761739 TGATGTTTTGGTCTGAATGGAGTC 59.238 41.667 0.00 0.00 0.00 3.36
3352 5725 7.306866 GCCGTACATAATCTGAAACAAGAGATC 60.307 40.741 0.00 0.00 0.00 2.75
3369 5742 8.464770 CAAGAGATCTTGTAGTTGAAAGAGAG 57.535 38.462 13.34 0.00 46.11 3.20
3383 5756 8.841300 AGTTGAAAGAGAGTTTGTAGGAATTTC 58.159 33.333 0.00 0.00 0.00 2.17
3391 5764 5.429130 AGTTTGTAGGAATTTCGGAGGATC 58.571 41.667 0.00 0.00 0.00 3.36
3402 5775 3.434940 TCGGAGGATCGGAATCATAGA 57.565 47.619 0.00 0.00 41.76 1.98
3453 5830 4.344679 TGCAAAATTCCAATGAGTCCAACT 59.655 37.500 0.00 0.00 0.00 3.16
3455 5832 5.178067 GCAAAATTCCAATGAGTCCAACTTG 59.822 40.000 0.00 0.00 0.00 3.16
3523 5902 4.808414 AGATTTCGTCCTCTTCACATCA 57.192 40.909 0.00 0.00 0.00 3.07
3524 5903 5.152623 AGATTTCGTCCTCTTCACATCAA 57.847 39.130 0.00 0.00 0.00 2.57
3526 5905 2.370281 TCGTCCTCTTCACATCAAGC 57.630 50.000 0.00 0.00 0.00 4.01
3527 5906 1.618343 TCGTCCTCTTCACATCAAGCA 59.382 47.619 0.00 0.00 0.00 3.91
3528 5907 2.037121 TCGTCCTCTTCACATCAAGCAA 59.963 45.455 0.00 0.00 0.00 3.91
3530 5909 3.668447 GTCCTCTTCACATCAAGCAAGA 58.332 45.455 0.00 0.00 0.00 3.02
3531 5910 4.260170 GTCCTCTTCACATCAAGCAAGAT 58.740 43.478 0.00 0.00 0.00 2.40
3584 5973 5.454471 CCAGGGAAAATGGTTGTGATTGAAA 60.454 40.000 0.00 0.00 32.85 2.69
3585 5974 5.697633 CAGGGAAAATGGTTGTGATTGAAAG 59.302 40.000 0.00 0.00 0.00 2.62
3586 5975 5.366477 AGGGAAAATGGTTGTGATTGAAAGT 59.634 36.000 0.00 0.00 0.00 2.66
3594 5990 7.397892 TGGTTGTGATTGAAAGTCTTGTTAA 57.602 32.000 0.00 0.00 0.00 2.01
3606 6002 8.736244 TGAAAGTCTTGTTAATAAGGGTAATGC 58.264 33.333 11.53 0.00 0.00 3.56
3607 6003 8.644374 AAAGTCTTGTTAATAAGGGTAATGCA 57.356 30.769 11.53 0.00 0.00 3.96
3612 6008 9.249053 TCTTGTTAATAAGGGTAATGCAATGAA 57.751 29.630 11.53 0.00 0.00 2.57
3621 6017 8.409358 AAGGGTAATGCAATGAAATATACTCC 57.591 34.615 0.00 0.00 0.00 3.85
3622 6018 6.948309 AGGGTAATGCAATGAAATATACTCCC 59.052 38.462 0.00 0.00 0.00 4.30
3623 6019 6.948309 GGGTAATGCAATGAAATATACTCCCT 59.052 38.462 0.00 0.00 0.00 4.20
3624 6020 7.121315 GGGTAATGCAATGAAATATACTCCCTC 59.879 40.741 0.00 0.00 0.00 4.30
3625 6021 7.121315 GGTAATGCAATGAAATATACTCCCTCC 59.879 40.741 0.00 0.00 0.00 4.30
3626 6022 4.641396 TGCAATGAAATATACTCCCTCCG 58.359 43.478 0.00 0.00 0.00 4.63
3627 6023 4.102524 TGCAATGAAATATACTCCCTCCGT 59.897 41.667 0.00 0.00 0.00 4.69
3628 6024 4.691216 GCAATGAAATATACTCCCTCCGTC 59.309 45.833 0.00 0.00 0.00 4.79
3629 6025 5.238583 CAATGAAATATACTCCCTCCGTCC 58.761 45.833 0.00 0.00 0.00 4.79
3630 6026 3.918566 TGAAATATACTCCCTCCGTCCA 58.081 45.455 0.00 0.00 0.00 4.02
3631 6027 4.291792 TGAAATATACTCCCTCCGTCCAA 58.708 43.478 0.00 0.00 0.00 3.53
3632 6028 4.717778 TGAAATATACTCCCTCCGTCCAAA 59.282 41.667 0.00 0.00 0.00 3.28
3633 6029 5.190132 TGAAATATACTCCCTCCGTCCAAAA 59.810 40.000 0.00 0.00 0.00 2.44
3634 6030 5.906772 AATATACTCCCTCCGTCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
3635 6031 5.906772 ATATACTCCCTCCGTCCAAAATT 57.093 39.130 0.00 0.00 0.00 1.82
3636 6032 2.971901 ACTCCCTCCGTCCAAAATTT 57.028 45.000 0.00 0.00 0.00 1.82
3637 6033 3.238788 ACTCCCTCCGTCCAAAATTTT 57.761 42.857 0.00 0.00 0.00 1.82
3638 6034 3.572642 ACTCCCTCCGTCCAAAATTTTT 58.427 40.909 0.00 0.00 0.00 1.94
3686 6082 9.740239 TGGATGTATCTAATACTAAAACGTGAC 57.260 33.333 0.00 0.00 36.70 3.67
3687 6083 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
3697 6093 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
3698 6094 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
3699 6095 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
3700 6096 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
3701 6097 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
3702 6098 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
3703 6099 5.279384 ACGTGACTTGATACATCCGTATTC 58.721 41.667 0.00 0.00 38.48 1.75
3704 6100 5.163591 ACGTGACTTGATACATCCGTATTCA 60.164 40.000 0.00 0.00 38.48 2.57
3705 6101 5.399596 CGTGACTTGATACATCCGTATTCAG 59.600 44.000 0.00 0.00 38.48 3.02
3706 6102 6.504398 GTGACTTGATACATCCGTATTCAGA 58.496 40.000 0.00 0.00 38.48 3.27
3707 6103 6.418226 GTGACTTGATACATCCGTATTCAGAC 59.582 42.308 0.00 0.00 38.48 3.51
3708 6104 6.096282 TGACTTGATACATCCGTATTCAGACA 59.904 38.462 0.00 0.00 38.48 3.41
3709 6105 6.873997 ACTTGATACATCCGTATTCAGACAA 58.126 36.000 0.00 0.00 38.48 3.18
3710 6106 7.327975 ACTTGATACATCCGTATTCAGACAAA 58.672 34.615 0.00 0.00 38.48 2.83
3711 6107 7.987458 ACTTGATACATCCGTATTCAGACAAAT 59.013 33.333 0.00 0.00 38.48 2.32
3712 6108 7.946655 TGATACATCCGTATTCAGACAAATC 57.053 36.000 0.00 0.00 38.48 2.17
3713 6109 7.726216 TGATACATCCGTATTCAGACAAATCT 58.274 34.615 0.00 0.00 38.48 2.40
3714 6110 8.856103 TGATACATCCGTATTCAGACAAATCTA 58.144 33.333 0.00 0.00 38.48 1.98
3715 6111 9.692749 GATACATCCGTATTCAGACAAATCTAA 57.307 33.333 0.00 0.00 38.48 2.10
3716 6112 9.698309 ATACATCCGTATTCAGACAAATCTAAG 57.302 33.333 0.00 0.00 34.53 2.18
3717 6113 7.782049 ACATCCGTATTCAGACAAATCTAAGA 58.218 34.615 0.00 0.00 32.25 2.10
3718 6114 7.707035 ACATCCGTATTCAGACAAATCTAAGAC 59.293 37.037 0.00 0.00 32.25 3.01
3719 6115 7.165460 TCCGTATTCAGACAAATCTAAGACA 57.835 36.000 0.00 0.00 32.25 3.41
3720 6116 7.608153 TCCGTATTCAGACAAATCTAAGACAA 58.392 34.615 0.00 0.00 32.25 3.18
3721 6117 7.759886 TCCGTATTCAGACAAATCTAAGACAAG 59.240 37.037 0.00 0.00 32.25 3.16
3722 6118 7.759886 CCGTATTCAGACAAATCTAAGACAAGA 59.240 37.037 0.00 0.00 32.25 3.02
3723 6119 9.140286 CGTATTCAGACAAATCTAAGACAAGAA 57.860 33.333 0.00 0.00 32.25 2.52
3730 6126 9.971922 AGACAAATCTAAGACAAGAATTTTTGG 57.028 29.630 12.83 0.00 31.65 3.28
3731 6127 9.196552 GACAAATCTAAGACAAGAATTTTTGGG 57.803 33.333 12.83 0.00 31.65 4.12
3732 6128 8.923270 ACAAATCTAAGACAAGAATTTTTGGGA 58.077 29.630 12.83 4.15 31.65 4.37
3733 6129 9.196552 CAAATCTAAGACAAGAATTTTTGGGAC 57.803 33.333 12.83 4.69 32.32 4.46
3734 6130 8.477419 AATCTAAGACAAGAATTTTTGGGACA 57.523 30.769 12.83 0.00 32.32 4.02
3735 6131 7.510549 TCTAAGACAAGAATTTTTGGGACAG 57.489 36.000 12.83 5.36 42.39 3.51
3736 6132 7.287061 TCTAAGACAAGAATTTTTGGGACAGA 58.713 34.615 12.83 7.26 42.39 3.41
3737 6133 6.396829 AAGACAAGAATTTTTGGGACAGAG 57.603 37.500 12.83 0.00 42.39 3.35
3738 6134 4.829492 AGACAAGAATTTTTGGGACAGAGG 59.171 41.667 12.83 0.00 42.39 3.69
3739 6135 3.897505 ACAAGAATTTTTGGGACAGAGGG 59.102 43.478 12.83 0.00 42.39 4.30
3740 6136 4.151883 CAAGAATTTTTGGGACAGAGGGA 58.848 43.478 0.76 0.00 42.39 4.20
3741 6137 4.039603 AGAATTTTTGGGACAGAGGGAG 57.960 45.455 0.00 0.00 42.39 4.30
3742 6138 3.399305 AGAATTTTTGGGACAGAGGGAGT 59.601 43.478 0.00 0.00 42.39 3.85
3743 6139 2.656947 TTTTTGGGACAGAGGGAGTG 57.343 50.000 0.00 0.00 42.39 3.51
3744 6140 0.771127 TTTTGGGACAGAGGGAGTGG 59.229 55.000 0.00 0.00 42.39 4.00
3806 6202 5.579904 CCTCCATCATCTAGCGATAATGTTG 59.420 44.000 0.00 0.00 0.00 3.33
3807 6203 6.101650 TCCATCATCTAGCGATAATGTTGT 57.898 37.500 0.00 0.00 0.00 3.32
3808 6204 5.928264 TCCATCATCTAGCGATAATGTTGTG 59.072 40.000 0.00 0.00 0.00 3.33
3809 6205 5.698089 CCATCATCTAGCGATAATGTTGTGT 59.302 40.000 0.00 0.00 0.00 3.72
3810 6206 6.868339 CCATCATCTAGCGATAATGTTGTGTA 59.132 38.462 0.00 0.00 0.00 2.90
3811 6207 7.062722 CCATCATCTAGCGATAATGTTGTGTAG 59.937 40.741 0.00 0.00 0.00 2.74
3812 6208 7.272037 TCATCTAGCGATAATGTTGTGTAGA 57.728 36.000 0.00 0.00 0.00 2.59
3813 6209 7.712797 TCATCTAGCGATAATGTTGTGTAGAA 58.287 34.615 0.00 0.00 0.00 2.10
3814 6210 8.194769 TCATCTAGCGATAATGTTGTGTAGAAA 58.805 33.333 0.00 0.00 0.00 2.52
3815 6211 8.817100 CATCTAGCGATAATGTTGTGTAGAAAA 58.183 33.333 0.00 0.00 0.00 2.29
3817 6213 6.178239 AGCGATAATGTTGTGTAGAAAACC 57.822 37.500 0.00 0.00 0.00 3.27
3818 6214 5.123344 AGCGATAATGTTGTGTAGAAAACCC 59.877 40.000 0.00 0.00 0.00 4.11
3819 6215 5.123344 GCGATAATGTTGTGTAGAAAACCCT 59.877 40.000 0.00 0.00 0.00 4.34
3820 6216 6.314400 GCGATAATGTTGTGTAGAAAACCCTA 59.686 38.462 0.00 0.00 0.00 3.53
3821 6217 7.148373 GCGATAATGTTGTGTAGAAAACCCTAA 60.148 37.037 0.00 0.00 0.00 2.69
3824 6220 9.975218 ATAATGTTGTGTAGAAAACCCTAATCT 57.025 29.630 0.00 0.00 0.00 2.40
3827 6223 8.611654 TGTTGTGTAGAAAACCCTAATCTAAC 57.388 34.615 0.00 0.00 0.00 2.34
3830 6226 9.856162 TTGTGTAGAAAACCCTAATCTAACTTT 57.144 29.630 0.00 0.00 0.00 2.66
3842 6238 9.257651 CCCTAATCTAACTTTACCTATTTCACG 57.742 37.037 0.00 0.00 0.00 4.35
3843 6239 9.257651 CCTAATCTAACTTTACCTATTTCACGG 57.742 37.037 0.00 0.00 0.00 4.94
3844 6240 9.257651 CTAATCTAACTTTACCTATTTCACGGG 57.742 37.037 0.00 0.00 0.00 5.28
3845 6241 5.981174 TCTAACTTTACCTATTTCACGGGG 58.019 41.667 0.00 0.00 0.00 5.73
3846 6242 3.639672 ACTTTACCTATTTCACGGGGG 57.360 47.619 0.00 0.00 0.00 5.40
3871 6267 4.827284 CCCTATGTGGTTGAACTTTTGTCT 59.173 41.667 0.00 0.00 0.00 3.41
3875 6271 7.860872 CCTATGTGGTTGAACTTTTGTCTTAAC 59.139 37.037 0.00 0.00 0.00 2.01
3891 6287 4.455877 GTCTTAACCAGACCAATCAACCTG 59.544 45.833 0.00 0.00 45.84 4.00
3915 6311 3.600388 GTTGCACCTACATGCTCTAGTT 58.400 45.455 0.00 0.00 46.28 2.24
3916 6312 3.981071 TGCACCTACATGCTCTAGTTT 57.019 42.857 0.00 0.00 46.28 2.66
3924 6320 9.764363 CACCTACATGCTCTAGTTTTATTATGA 57.236 33.333 0.00 0.00 0.00 2.15
3928 6324 8.147642 ACATGCTCTAGTTTTATTATGAGTGC 57.852 34.615 0.00 0.00 0.00 4.40
3929 6325 7.989741 ACATGCTCTAGTTTTATTATGAGTGCT 59.010 33.333 0.00 0.00 0.00 4.40
3930 6326 8.834465 CATGCTCTAGTTTTATTATGAGTGCTT 58.166 33.333 0.00 0.00 0.00 3.91
3961 6372 5.364446 TGTCACAACACCCTTTAGTCTTCTA 59.636 40.000 0.00 0.00 0.00 2.10
4011 6422 1.006758 AGGTGCACCCTAGCTAGTACA 59.993 52.381 32.29 8.76 43.87 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.678941 GTGAGATCAACAATATTAGATACGTCA 57.321 33.333 0.00 0.00 0.00 4.35
1 2 9.678941 TGTGAGATCAACAATATTAGATACGTC 57.321 33.333 0.00 0.00 0.00 4.34
51 52 6.316890 AGCCTCGTAAACTTTGAACAAGTTTA 59.683 34.615 13.46 13.46 45.51 2.01
53 54 4.638865 AGCCTCGTAAACTTTGAACAAGTT 59.361 37.500 0.00 0.00 41.82 2.66
54 55 4.196971 AGCCTCGTAAACTTTGAACAAGT 58.803 39.130 0.00 0.00 0.00 3.16
55 56 4.813296 AGCCTCGTAAACTTTGAACAAG 57.187 40.909 0.00 0.00 0.00 3.16
56 57 4.636648 TCAAGCCTCGTAAACTTTGAACAA 59.363 37.500 0.00 0.00 0.00 2.83
57 58 4.034742 GTCAAGCCTCGTAAACTTTGAACA 59.965 41.667 0.00 0.00 0.00 3.18
58 59 4.272748 AGTCAAGCCTCGTAAACTTTGAAC 59.727 41.667 0.00 0.00 0.00 3.18
59 60 4.448210 AGTCAAGCCTCGTAAACTTTGAA 58.552 39.130 0.00 0.00 0.00 2.69
60 61 4.067972 AGTCAAGCCTCGTAAACTTTGA 57.932 40.909 0.00 0.00 0.00 2.69
61 62 4.272504 TGAAGTCAAGCCTCGTAAACTTTG 59.727 41.667 0.00 0.00 0.00 2.77
62 63 4.448210 TGAAGTCAAGCCTCGTAAACTTT 58.552 39.130 0.00 0.00 0.00 2.66
63 64 4.058817 CTGAAGTCAAGCCTCGTAAACTT 58.941 43.478 0.00 0.00 0.00 2.66
64 65 3.321111 TCTGAAGTCAAGCCTCGTAAACT 59.679 43.478 0.00 0.00 0.00 2.66
65 66 3.429207 GTCTGAAGTCAAGCCTCGTAAAC 59.571 47.826 0.00 0.00 0.00 2.01
66 67 3.069016 TGTCTGAAGTCAAGCCTCGTAAA 59.931 43.478 0.00 0.00 0.00 2.01
67 68 2.626266 TGTCTGAAGTCAAGCCTCGTAA 59.374 45.455 0.00 0.00 0.00 3.18
68 69 2.235891 TGTCTGAAGTCAAGCCTCGTA 58.764 47.619 0.00 0.00 0.00 3.43
69 70 1.040646 TGTCTGAAGTCAAGCCTCGT 58.959 50.000 0.00 0.00 0.00 4.18
70 71 2.154854 TTGTCTGAAGTCAAGCCTCG 57.845 50.000 0.00 0.00 0.00 4.63
71 72 4.322567 AGATTTGTCTGAAGTCAAGCCTC 58.677 43.478 0.00 0.00 0.00 4.70
72 73 4.363991 AGATTTGTCTGAAGTCAAGCCT 57.636 40.909 0.00 0.00 0.00 4.58
73 74 6.749923 ATAAGATTTGTCTGAAGTCAAGCC 57.250 37.500 0.00 0.00 0.00 4.35
74 75 7.854916 GCATATAAGATTTGTCTGAAGTCAAGC 59.145 37.037 0.00 0.00 0.00 4.01
75 76 8.886719 TGCATATAAGATTTGTCTGAAGTCAAG 58.113 33.333 0.00 0.00 0.00 3.02
76 77 8.791327 TGCATATAAGATTTGTCTGAAGTCAA 57.209 30.769 0.00 0.00 0.00 3.18
77 78 8.791327 TTGCATATAAGATTTGTCTGAAGTCA 57.209 30.769 0.00 0.00 0.00 3.41
78 79 9.495754 GTTTGCATATAAGATTTGTCTGAAGTC 57.504 33.333 0.00 0.00 0.00 3.01
79 80 9.236006 AGTTTGCATATAAGATTTGTCTGAAGT 57.764 29.630 0.00 0.00 0.00 3.01
90 91 8.621286 CGGTCCTTTTTAGTTTGCATATAAGAT 58.379 33.333 0.00 0.00 0.00 2.40
91 92 7.066525 CCGGTCCTTTTTAGTTTGCATATAAGA 59.933 37.037 0.00 0.00 0.00 2.10
92 93 7.066525 TCCGGTCCTTTTTAGTTTGCATATAAG 59.933 37.037 0.00 0.00 0.00 1.73
93 94 6.885376 TCCGGTCCTTTTTAGTTTGCATATAA 59.115 34.615 0.00 0.00 0.00 0.98
94 95 6.416415 TCCGGTCCTTTTTAGTTTGCATATA 58.584 36.000 0.00 0.00 0.00 0.86
95 96 5.258051 TCCGGTCCTTTTTAGTTTGCATAT 58.742 37.500 0.00 0.00 0.00 1.78
96 97 4.653868 TCCGGTCCTTTTTAGTTTGCATA 58.346 39.130 0.00 0.00 0.00 3.14
97 98 3.492337 TCCGGTCCTTTTTAGTTTGCAT 58.508 40.909 0.00 0.00 0.00 3.96
98 99 2.882137 CTCCGGTCCTTTTTAGTTTGCA 59.118 45.455 0.00 0.00 0.00 4.08
99 100 2.228103 CCTCCGGTCCTTTTTAGTTTGC 59.772 50.000 0.00 0.00 0.00 3.68
100 101 2.817844 CCCTCCGGTCCTTTTTAGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
101 102 2.712627 TCCCTCCGGTCCTTTTTAGTTT 59.287 45.455 0.00 0.00 0.00 2.66
102 103 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
103 104 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
104 105 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
105 106 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
106 107 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
107 108 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
108 109 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
109 110 0.338814 ATGTACTCCCTCCGGTCCTT 59.661 55.000 0.00 0.00 0.00 3.36
110 111 1.145325 CTATGTACTCCCTCCGGTCCT 59.855 57.143 0.00 0.00 0.00 3.85
111 112 1.618487 CTATGTACTCCCTCCGGTCC 58.382 60.000 0.00 0.00 0.00 4.46
112 113 0.960286 GCTATGTACTCCCTCCGGTC 59.040 60.000 0.00 0.00 0.00 4.79
113 114 0.260816 TGCTATGTACTCCCTCCGGT 59.739 55.000 0.00 0.00 0.00 5.28
114 115 1.068741 GTTGCTATGTACTCCCTCCGG 59.931 57.143 0.00 0.00 0.00 5.14
115 116 1.269102 CGTTGCTATGTACTCCCTCCG 60.269 57.143 0.00 0.00 0.00 4.63
116 117 1.538419 GCGTTGCTATGTACTCCCTCC 60.538 57.143 0.00 0.00 0.00 4.30
117 118 1.136305 TGCGTTGCTATGTACTCCCTC 59.864 52.381 0.00 0.00 0.00 4.30
118 119 1.137086 CTGCGTTGCTATGTACTCCCT 59.863 52.381 0.00 0.00 0.00 4.20
119 120 1.571919 CTGCGTTGCTATGTACTCCC 58.428 55.000 0.00 0.00 0.00 4.30
120 121 1.134788 ACCTGCGTTGCTATGTACTCC 60.135 52.381 0.00 0.00 0.00 3.85
121 122 2.194271 GACCTGCGTTGCTATGTACTC 58.806 52.381 0.00 0.00 0.00 2.59
122 123 1.134788 GGACCTGCGTTGCTATGTACT 60.135 52.381 0.00 0.00 0.00 2.73
123 124 1.287425 GGACCTGCGTTGCTATGTAC 58.713 55.000 0.00 0.00 0.00 2.90
126 127 2.813179 GCGGACCTGCGTTGCTATG 61.813 63.158 0.00 0.00 0.00 2.23
153 156 2.028476 TGTGCTACTCCGTATGTTGCTT 60.028 45.455 0.00 0.00 37.15 3.91
165 168 3.248602 CCTGAACAAGTTGTGTGCTACTC 59.751 47.826 9.79 1.93 40.60 2.59
169 172 2.418368 TCCTGAACAAGTTGTGTGCT 57.582 45.000 9.79 0.00 40.60 4.40
170 173 2.349817 CGATCCTGAACAAGTTGTGTGC 60.350 50.000 9.79 3.17 40.60 4.57
171 174 2.872245 ACGATCCTGAACAAGTTGTGTG 59.128 45.455 9.79 2.93 40.60 3.82
258 272 6.235664 AGAGCATATGCATATGTGAATGTGA 58.764 36.000 35.50 4.35 45.16 3.58
259 273 6.403309 GGAGAGCATATGCATATGTGAATGTG 60.403 42.308 35.50 18.36 45.16 3.21
260 274 5.646793 GGAGAGCATATGCATATGTGAATGT 59.353 40.000 35.50 22.57 45.16 2.71
261 275 5.220605 CGGAGAGCATATGCATATGTGAATG 60.221 44.000 35.50 22.38 45.16 2.67
262 276 4.874396 CGGAGAGCATATGCATATGTGAAT 59.126 41.667 35.50 23.83 45.16 2.57
263 277 4.021192 TCGGAGAGCATATGCATATGTGAA 60.021 41.667 35.50 18.44 45.16 3.18
264 278 3.511146 TCGGAGAGCATATGCATATGTGA 59.489 43.478 35.50 23.87 45.16 3.58
265 279 3.853475 TCGGAGAGCATATGCATATGTG 58.147 45.455 35.50 21.44 45.16 3.21
266 280 4.750021 ATCGGAGAGCATATGCATATGT 57.250 40.909 35.50 25.98 43.63 2.29
269 283 5.196695 AGTCTATCGGAGAGCATATGCATA 58.803 41.667 28.62 9.27 43.63 3.14
291 365 1.000283 CTCGCCCAGAATACCAGCTAG 60.000 57.143 0.00 0.00 0.00 3.42
310 384 0.327259 TTTGGCATGCTCTCTCTGCT 59.673 50.000 18.92 0.00 36.18 4.24
340 414 0.596577 TCACTCGAAGTCCAACTCGG 59.403 55.000 0.00 0.00 0.00 4.63
392 475 3.751175 TCACCATGAAAGTGATTCGGTTC 59.249 43.478 0.00 0.00 39.29 3.62
411 495 5.824624 ACCACATGTCCATCAGATTAATCAC 59.175 40.000 17.56 6.35 0.00 3.06
413 497 8.627208 ATTACCACATGTCCATCAGATTAATC 57.373 34.615 7.41 7.41 0.00 1.75
439 523 8.572828 TGTCATAACAAAGCAAAACACAATAG 57.427 30.769 0.00 0.00 30.70 1.73
488 572 5.787953 TGCAAGAAACTGAATGATTTGGA 57.212 34.783 0.00 0.00 0.00 3.53
512 596 4.410099 TGATTTCTTCATCCCTGCAAAGT 58.590 39.130 0.00 0.00 0.00 2.66
554 638 8.522178 AACACACTGATTGTTTTTCGTAAAAA 57.478 26.923 1.22 2.06 35.67 1.94
555 639 7.808381 TGAACACACTGATTGTTTTTCGTAAAA 59.192 29.630 0.00 0.00 37.31 1.52
556 640 7.306213 TGAACACACTGATTGTTTTTCGTAAA 58.694 30.769 0.00 0.00 37.31 2.01
557 641 6.843208 TGAACACACTGATTGTTTTTCGTAA 58.157 32.000 0.00 0.00 37.31 3.18
558 642 6.424176 TGAACACACTGATTGTTTTTCGTA 57.576 33.333 0.00 0.00 37.31 3.43
559 643 5.303747 TGAACACACTGATTGTTTTTCGT 57.696 34.783 0.00 0.00 37.31 3.85
560 644 6.624710 TTTGAACACACTGATTGTTTTTCG 57.375 33.333 0.00 0.00 37.31 3.46
561 645 9.264782 CAAATTTGAACACACTGATTGTTTTTC 57.735 29.630 13.08 0.00 37.31 2.29
562 646 8.782144 ACAAATTTGAACACACTGATTGTTTTT 58.218 25.926 24.64 0.00 37.31 1.94
563 647 8.321650 ACAAATTTGAACACACTGATTGTTTT 57.678 26.923 24.64 0.00 37.31 2.43
564 648 7.903995 ACAAATTTGAACACACTGATTGTTT 57.096 28.000 24.64 0.00 37.31 2.83
565 649 7.903995 AACAAATTTGAACACACTGATTGTT 57.096 28.000 24.64 0.97 39.94 2.83
566 650 7.903995 AAACAAATTTGAACACACTGATTGT 57.096 28.000 24.64 0.00 39.97 2.71
592 676 8.522178 AACACACTGATTGTTTTTCGTAAAAA 57.478 26.923 1.22 2.06 35.67 1.94
593 677 7.808381 TGAACACACTGATTGTTTTTCGTAAAA 59.192 29.630 0.00 0.00 37.31 1.52
594 678 7.306213 TGAACACACTGATTGTTTTTCGTAAA 58.694 30.769 0.00 0.00 37.31 2.01
595 679 6.843208 TGAACACACTGATTGTTTTTCGTAA 58.157 32.000 0.00 0.00 37.31 3.18
596 680 6.424176 TGAACACACTGATTGTTTTTCGTA 57.576 33.333 0.00 0.00 37.31 3.43
597 681 5.303747 TGAACACACTGATTGTTTTTCGT 57.696 34.783 0.00 0.00 37.31 3.85
598 682 6.624710 TTTGAACACACTGATTGTTTTTCG 57.375 33.333 0.00 0.00 37.31 3.46
599 683 9.264782 CAAATTTGAACACACTGATTGTTTTTC 57.735 29.630 13.08 0.00 37.31 2.29
600 684 8.782144 ACAAATTTGAACACACTGATTGTTTTT 58.218 25.926 24.64 0.00 37.31 1.94
601 685 8.321650 ACAAATTTGAACACACTGATTGTTTT 57.678 26.923 24.64 0.00 37.31 2.43
602 686 7.903995 ACAAATTTGAACACACTGATTGTTT 57.096 28.000 24.64 0.00 37.31 2.83
603 687 7.903995 AACAAATTTGAACACACTGATTGTT 57.096 28.000 24.64 0.97 39.94 2.83
604 688 7.903995 AAACAAATTTGAACACACTGATTGT 57.096 28.000 24.64 0.00 39.97 2.71
630 714 8.522178 AACACACTGATTGTTTTTCGTAAAAA 57.478 26.923 1.22 2.06 35.67 1.94
631 715 7.808381 TGAACACACTGATTGTTTTTCGTAAAA 59.192 29.630 0.00 0.00 37.31 1.52
632 716 7.306213 TGAACACACTGATTGTTTTTCGTAAA 58.694 30.769 0.00 0.00 37.31 2.01
633 717 6.843208 TGAACACACTGATTGTTTTTCGTAA 58.157 32.000 0.00 0.00 37.31 3.18
634 718 6.424176 TGAACACACTGATTGTTTTTCGTA 57.576 33.333 0.00 0.00 37.31 3.43
635 719 5.303747 TGAACACACTGATTGTTTTTCGT 57.696 34.783 0.00 0.00 37.31 3.85
636 720 6.810888 AATGAACACACTGATTGTTTTTCG 57.189 33.333 0.00 0.00 37.31 3.46
707 797 6.367969 ACGAATCTGGGATTAATTACGCATAC 59.632 38.462 0.00 0.00 0.00 2.39
714 804 9.893634 TTCAAGTTACGAATCTGGGATTAATTA 57.106 29.630 0.00 0.00 0.00 1.40
722 812 6.908825 TGATTTTTCAAGTTACGAATCTGGG 58.091 36.000 0.00 0.00 0.00 4.45
762 854 6.395426 TCAATGAGCACACTGATTTCTTTT 57.605 33.333 0.00 0.00 25.77 2.27
763 855 6.208007 TGATCAATGAGCACACTGATTTCTTT 59.792 34.615 9.41 0.00 41.93 2.52
810 905 7.867445 TTTTGACTTTTTAGATTGCGAATCC 57.133 32.000 0.00 0.00 38.71 3.01
828 923 9.850628 TTCTTCATCATCAATTGAGATTTTGAC 57.149 29.630 14.54 0.00 37.89 3.18
1116 1231 3.503363 TCGAGTAATCAAGGTACGTGTGT 59.497 43.478 0.00 0.00 39.30 3.72
1204 1319 2.094026 GGGTGAAGAAATTGGGCATGTC 60.094 50.000 0.00 0.00 0.00 3.06
1227 1342 2.634940 AGCTAAGCAAACCTGACTGAGA 59.365 45.455 0.00 0.00 0.00 3.27
1305 1432 6.744112 AGTCAGCAAACCGAATGAAAAATTA 58.256 32.000 0.00 0.00 0.00 1.40
1506 2019 5.911752 ACCAGCTGTACTCATATCTTCAAG 58.088 41.667 13.81 0.00 0.00 3.02
1573 2171 3.544684 ACAGGATGATTGCGCAGATAAA 58.455 40.909 11.31 0.00 39.69 1.40
1577 2175 2.548707 GGATACAGGATGATTGCGCAGA 60.549 50.000 11.31 1.94 39.69 4.26
1581 2179 3.391506 TGAGGATACAGGATGATTGCG 57.608 47.619 0.00 0.00 39.69 4.85
1582 2180 5.371526 TCTTTGAGGATACAGGATGATTGC 58.628 41.667 0.00 0.00 39.69 3.56
1583 2181 8.461249 AATTCTTTGAGGATACAGGATGATTG 57.539 34.615 0.00 0.00 39.69 2.67
1584 2182 7.723172 GGAATTCTTTGAGGATACAGGATGATT 59.277 37.037 5.23 0.00 39.69 2.57
1587 2196 5.468072 CGGAATTCTTTGAGGATACAGGATG 59.532 44.000 5.23 0.00 46.00 3.51
1595 2204 3.634397 TGAGCGGAATTCTTTGAGGAT 57.366 42.857 5.23 0.00 0.00 3.24
1611 2220 3.040099 ACAACACGCGTTAAAAATGAGC 58.960 40.909 10.22 0.00 32.75 4.26
1782 2442 2.970987 ACCCAAGGTTGTAGCCATTTT 58.029 42.857 0.00 0.00 27.29 1.82
1836 2499 7.145985 TGTAGCTGATATAATTTGACTCGGTC 58.854 38.462 0.00 0.00 0.00 4.79
1851 2520 3.006859 ACGCCTAATGCATGTAGCTGATA 59.993 43.478 0.00 0.00 45.94 2.15
1852 2521 2.224378 ACGCCTAATGCATGTAGCTGAT 60.224 45.455 0.00 0.00 45.94 2.90
1856 2532 1.581934 TGACGCCTAATGCATGTAGC 58.418 50.000 0.00 2.16 45.96 3.58
1857 2533 4.060900 AGATTGACGCCTAATGCATGTAG 58.939 43.478 0.00 4.54 41.33 2.74
1863 2539 2.423538 ACCAAAGATTGACGCCTAATGC 59.576 45.455 0.00 0.00 0.00 3.56
1865 2541 5.124936 GGTTTACCAAAGATTGACGCCTAAT 59.875 40.000 0.00 0.00 35.64 1.73
1940 2627 3.696051 CCATACCTCCATTTGTCCTGTTG 59.304 47.826 0.00 0.00 0.00 3.33
2032 2912 0.833409 TCCTGCTTCAGCTCTGGTGA 60.833 55.000 0.00 0.00 42.66 4.02
2060 2940 2.815478 CCTTCGAGCTCAATCAGGTAC 58.185 52.381 15.40 0.00 30.88 3.34
2066 2946 1.884926 CCGGCCTTCGAGCTCAATC 60.885 63.158 15.40 0.00 42.43 2.67
2162 3051 5.798125 TTGGTGTTGCAAAAATCCATCTA 57.202 34.783 0.00 0.00 0.00 1.98
2163 3052 4.686191 TTGGTGTTGCAAAAATCCATCT 57.314 36.364 0.00 0.00 0.00 2.90
2164 3053 4.996122 TCATTGGTGTTGCAAAAATCCATC 59.004 37.500 0.00 0.00 0.00 3.51
2165 3054 4.970711 TCATTGGTGTTGCAAAAATCCAT 58.029 34.783 0.00 0.00 0.00 3.41
2195 4449 8.675705 TGAACAAGTTTGATTAGATCACTTCA 57.324 30.769 0.00 0.00 39.39 3.02
2196 4450 9.766277 GATGAACAAGTTTGATTAGATCACTTC 57.234 33.333 0.00 0.00 39.39 3.01
2197 4451 9.288576 TGATGAACAAGTTTGATTAGATCACTT 57.711 29.630 0.00 0.00 39.39 3.16
2198 4452 8.853077 TGATGAACAAGTTTGATTAGATCACT 57.147 30.769 0.00 0.00 39.39 3.41
2395 4650 2.478514 CCGATGACAAAACACGACATGA 59.521 45.455 0.00 0.00 0.00 3.07
2424 4679 5.415221 GGTAGAGGAACAAGATGTTGAGAG 58.585 45.833 9.96 0.00 41.28 3.20
2425 4680 4.082190 CGGTAGAGGAACAAGATGTTGAGA 60.082 45.833 9.96 0.00 41.28 3.27
2633 4889 5.107182 CGAGCATGTGCATATAAGAAAGGAG 60.107 44.000 7.83 0.00 45.16 3.69
2639 4895 3.110447 TGCGAGCATGTGCATATAAGA 57.890 42.857 7.83 0.00 45.16 2.10
2646 4902 2.046120 TGGATGCGAGCATGTGCA 60.046 55.556 15.90 10.95 46.51 4.57
2647 4903 2.713770 CTGGATGCGAGCATGTGC 59.286 61.111 15.90 1.02 36.70 4.57
2648 4904 2.110352 TGCTGGATGCGAGCATGTG 61.110 57.895 15.90 6.29 46.63 3.21
2649 4905 2.269883 TGCTGGATGCGAGCATGT 59.730 55.556 15.90 0.00 46.63 3.21
2720 5013 9.584008 CTACCACAGGATAGTATTCTTAGGTAA 57.416 37.037 15.16 5.11 0.00 2.85
2775 5081 8.948631 TGAATATCCTTCTTGTAAGTTGCTAG 57.051 34.615 0.00 0.00 0.00 3.42
2941 5267 0.671472 TGAGCAGCATCAACACGAGG 60.671 55.000 0.00 0.00 0.00 4.63
3003 5329 0.895100 TGATCACTTTGTGGCCCTGC 60.895 55.000 0.00 0.00 33.87 4.85
3008 5334 2.165030 CCCAGAATGATCACTTTGTGGC 59.835 50.000 16.27 0.00 40.63 5.01
3009 5335 2.756760 CCCCAGAATGATCACTTTGTGG 59.243 50.000 15.20 15.20 41.18 4.17
3043 5378 4.384056 ACTTTCGCTATTCCATGATCCAG 58.616 43.478 0.00 0.00 0.00 3.86
3115 5450 3.365265 CCGGCTTTGACCACAGGC 61.365 66.667 0.00 0.29 0.00 4.85
3117 5452 0.817634 TTGTCCGGCTTTGACCACAG 60.818 55.000 0.00 0.00 31.60 3.66
3129 5478 1.079127 AGCCGATCACTTTGTCCGG 60.079 57.895 0.00 0.00 42.74 5.14
3132 5481 1.079503 GGACAGCCGATCACTTTGTC 58.920 55.000 7.66 7.66 37.90 3.18
3155 5509 7.016661 TCCCAAACTAGAAGAAGAGATGAAAGT 59.983 37.037 0.00 0.00 0.00 2.66
3208 5581 6.238869 GCCTTCCATTCTTACTTCATCCAATC 60.239 42.308 0.00 0.00 0.00 2.67
3226 5599 2.655090 TCAATGTCACTTGCCTTCCA 57.345 45.000 0.00 0.00 0.00 3.53
3250 5623 2.357836 CATGGCCTGCTTCCCAGT 59.642 61.111 3.32 0.00 40.06 4.00
3280 5653 8.526147 CAGACCAAAACATCAGGAATAAAATCT 58.474 33.333 0.00 0.00 0.00 2.40
3315 5688 6.523546 CAGATTATGTACGGCTACATCTAACG 59.476 42.308 11.25 0.00 41.83 3.18
3352 5725 7.926555 TCCTACAAACTCTCTTTCAACTACAAG 59.073 37.037 0.00 0.00 0.00 3.16
3369 5742 4.270325 CGATCCTCCGAAATTCCTACAAAC 59.730 45.833 0.00 0.00 0.00 2.93
3383 5756 4.521130 TTTCTATGATTCCGATCCTCCG 57.479 45.455 0.00 0.00 0.00 4.63
3453 5830 8.408043 ACATTTGATACAAGAGTTTCCATCAA 57.592 30.769 0.00 0.00 32.22 2.57
3455 5832 9.696917 AAAACATTTGATACAAGAGTTTCCATC 57.303 29.630 12.71 0.00 0.00 3.51
3500 5879 6.280855 TGATGTGAAGAGGACGAAATCTTA 57.719 37.500 0.00 0.00 35.93 2.10
3501 5880 5.152623 TGATGTGAAGAGGACGAAATCTT 57.847 39.130 0.00 0.00 38.46 2.40
3510 5889 4.019950 TCATCTTGCTTGATGTGAAGAGGA 60.020 41.667 15.45 0.00 43.03 3.71
3511 5890 4.259356 TCATCTTGCTTGATGTGAAGAGG 58.741 43.478 15.45 0.00 43.03 3.69
3514 5893 6.617879 TGATTTCATCTTGCTTGATGTGAAG 58.382 36.000 15.45 0.00 43.03 3.02
3515 5894 6.578163 TGATTTCATCTTGCTTGATGTGAA 57.422 33.333 15.45 12.67 43.03 3.18
3517 5896 7.827819 AAATGATTTCATCTTGCTTGATGTG 57.172 32.000 15.45 0.00 43.03 3.21
3518 5897 8.092068 TCAAAATGATTTCATCTTGCTTGATGT 58.908 29.630 15.45 1.76 43.03 3.06
3521 5900 7.597369 CACTCAAAATGATTTCATCTTGCTTGA 59.403 33.333 2.39 3.27 35.02 3.02
3522 5901 7.597369 TCACTCAAAATGATTTCATCTTGCTTG 59.403 33.333 2.39 2.74 35.02 4.01
3523 5902 7.663827 TCACTCAAAATGATTTCATCTTGCTT 58.336 30.769 2.39 0.00 35.02 3.91
3524 5903 7.223260 TCACTCAAAATGATTTCATCTTGCT 57.777 32.000 2.39 0.00 35.02 3.91
3551 5930 6.126507 ACAACCATTTTCCCTGGAGAATTTTT 60.127 34.615 0.00 0.00 37.22 1.94
3552 5931 5.369404 ACAACCATTTTCCCTGGAGAATTTT 59.631 36.000 0.00 0.00 37.22 1.82
3553 5932 4.907269 ACAACCATTTTCCCTGGAGAATTT 59.093 37.500 0.00 0.00 37.22 1.82
3555 5934 3.834231 CACAACCATTTTCCCTGGAGAAT 59.166 43.478 0.00 0.00 37.22 2.40
3564 5952 6.515832 AGACTTTCAATCACAACCATTTTCC 58.484 36.000 0.00 0.00 0.00 3.13
3566 5954 7.330262 ACAAGACTTTCAATCACAACCATTTT 58.670 30.769 0.00 0.00 0.00 1.82
3569 5957 6.469782 AACAAGACTTTCAATCACAACCAT 57.530 33.333 0.00 0.00 0.00 3.55
3584 5973 8.686334 CATTGCATTACCCTTATTAACAAGACT 58.314 33.333 0.00 0.00 0.00 3.24
3585 5974 8.682710 TCATTGCATTACCCTTATTAACAAGAC 58.317 33.333 0.00 0.00 0.00 3.01
3586 5975 8.815565 TCATTGCATTACCCTTATTAACAAGA 57.184 30.769 0.00 0.00 0.00 3.02
3606 6002 5.221641 TGGACGGAGGGAGTATATTTCATTG 60.222 44.000 0.00 0.00 0.00 2.82
3607 6003 4.905456 TGGACGGAGGGAGTATATTTCATT 59.095 41.667 0.00 0.00 0.00 2.57
3612 6008 5.906772 ATTTTGGACGGAGGGAGTATATT 57.093 39.130 0.00 0.00 0.00 1.28
3660 6056 9.740239 GTCACGTTTTAGTATTAGATACATCCA 57.260 33.333 0.00 0.00 38.21 3.41
3661 6057 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
3671 6067 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
3672 6068 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
3673 6069 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
3674 6070 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
3675 6071 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
3676 6072 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
3677 6073 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
3678 6074 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
3679 6075 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
3680 6076 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
3681 6077 5.278604 TGAATACGGATGTATCAAGTCACG 58.721 41.667 0.00 0.00 40.42 4.35
3682 6078 6.418226 GTCTGAATACGGATGTATCAAGTCAC 59.582 42.308 0.00 0.00 40.42 3.67
3683 6079 6.096282 TGTCTGAATACGGATGTATCAAGTCA 59.904 38.462 0.00 0.00 40.42 3.41
3684 6080 6.504398 TGTCTGAATACGGATGTATCAAGTC 58.496 40.000 0.00 0.00 40.42 3.01
3685 6081 6.465439 TGTCTGAATACGGATGTATCAAGT 57.535 37.500 0.00 0.00 40.42 3.16
3686 6082 7.770801 TTTGTCTGAATACGGATGTATCAAG 57.229 36.000 0.00 0.00 40.42 3.02
3687 6083 8.204160 AGATTTGTCTGAATACGGATGTATCAA 58.796 33.333 0.00 0.00 40.42 2.57
3688 6084 7.726216 AGATTTGTCTGAATACGGATGTATCA 58.274 34.615 0.00 0.00 40.42 2.15
3689 6085 9.692749 TTAGATTTGTCTGAATACGGATGTATC 57.307 33.333 0.00 0.00 40.42 2.24
3690 6086 9.698309 CTTAGATTTGTCTGAATACGGATGTAT 57.302 33.333 0.00 0.00 43.14 2.29
3691 6087 8.909923 TCTTAGATTTGTCTGAATACGGATGTA 58.090 33.333 0.00 0.00 33.72 2.29
3692 6088 7.707035 GTCTTAGATTTGTCTGAATACGGATGT 59.293 37.037 0.00 0.00 33.72 3.06
3693 6089 7.706607 TGTCTTAGATTTGTCTGAATACGGATG 59.293 37.037 0.00 0.00 33.72 3.51
3694 6090 7.782049 TGTCTTAGATTTGTCTGAATACGGAT 58.218 34.615 0.00 0.00 33.72 4.18
3695 6091 7.165460 TGTCTTAGATTTGTCTGAATACGGA 57.835 36.000 0.00 0.00 0.00 4.69
3696 6092 7.759886 TCTTGTCTTAGATTTGTCTGAATACGG 59.240 37.037 0.00 0.00 0.00 4.02
3697 6093 8.689251 TCTTGTCTTAGATTTGTCTGAATACG 57.311 34.615 0.00 0.00 0.00 3.06
3704 6100 9.971922 CCAAAAATTCTTGTCTTAGATTTGTCT 57.028 29.630 0.00 0.00 0.00 3.41
3705 6101 9.196552 CCCAAAAATTCTTGTCTTAGATTTGTC 57.803 33.333 0.00 0.00 0.00 3.18
3706 6102 8.923270 TCCCAAAAATTCTTGTCTTAGATTTGT 58.077 29.630 0.00 0.00 0.00 2.83
3707 6103 9.196552 GTCCCAAAAATTCTTGTCTTAGATTTG 57.803 33.333 0.00 0.00 0.00 2.32
3708 6104 8.923270 TGTCCCAAAAATTCTTGTCTTAGATTT 58.077 29.630 0.00 0.00 0.00 2.17
3709 6105 8.477419 TGTCCCAAAAATTCTTGTCTTAGATT 57.523 30.769 0.00 0.00 0.00 2.40
3710 6106 7.944554 TCTGTCCCAAAAATTCTTGTCTTAGAT 59.055 33.333 0.00 0.00 0.00 1.98
3711 6107 7.287061 TCTGTCCCAAAAATTCTTGTCTTAGA 58.713 34.615 0.00 0.00 0.00 2.10
3712 6108 7.308830 CCTCTGTCCCAAAAATTCTTGTCTTAG 60.309 40.741 0.00 0.00 0.00 2.18
3713 6109 6.490040 CCTCTGTCCCAAAAATTCTTGTCTTA 59.510 38.462 0.00 0.00 0.00 2.10
3714 6110 5.302823 CCTCTGTCCCAAAAATTCTTGTCTT 59.697 40.000 0.00 0.00 0.00 3.01
3715 6111 4.829492 CCTCTGTCCCAAAAATTCTTGTCT 59.171 41.667 0.00 0.00 0.00 3.41
3716 6112 4.021981 CCCTCTGTCCCAAAAATTCTTGTC 60.022 45.833 0.00 0.00 0.00 3.18
3717 6113 3.897505 CCCTCTGTCCCAAAAATTCTTGT 59.102 43.478 0.00 0.00 0.00 3.16
3718 6114 4.151883 TCCCTCTGTCCCAAAAATTCTTG 58.848 43.478 0.00 0.00 0.00 3.02
3719 6115 4.140924 ACTCCCTCTGTCCCAAAAATTCTT 60.141 41.667 0.00 0.00 0.00 2.52
3720 6116 3.399305 ACTCCCTCTGTCCCAAAAATTCT 59.601 43.478 0.00 0.00 0.00 2.40
3721 6117 3.507622 CACTCCCTCTGTCCCAAAAATTC 59.492 47.826 0.00 0.00 0.00 2.17
3722 6118 3.500343 CACTCCCTCTGTCCCAAAAATT 58.500 45.455 0.00 0.00 0.00 1.82
3723 6119 2.225117 CCACTCCCTCTGTCCCAAAAAT 60.225 50.000 0.00 0.00 0.00 1.82
3724 6120 1.144913 CCACTCCCTCTGTCCCAAAAA 59.855 52.381 0.00 0.00 0.00 1.94
3725 6121 0.771127 CCACTCCCTCTGTCCCAAAA 59.229 55.000 0.00 0.00 0.00 2.44
3726 6122 0.401395 ACCACTCCCTCTGTCCCAAA 60.401 55.000 0.00 0.00 0.00 3.28
3727 6123 0.401395 AACCACTCCCTCTGTCCCAA 60.401 55.000 0.00 0.00 0.00 4.12
3728 6124 0.401395 AAACCACTCCCTCTGTCCCA 60.401 55.000 0.00 0.00 0.00 4.37
3729 6125 1.652947 TAAACCACTCCCTCTGTCCC 58.347 55.000 0.00 0.00 0.00 4.46
3730 6126 4.010349 CAAATAAACCACTCCCTCTGTCC 58.990 47.826 0.00 0.00 0.00 4.02
3731 6127 3.440522 GCAAATAAACCACTCCCTCTGTC 59.559 47.826 0.00 0.00 0.00 3.51
3732 6128 3.181434 TGCAAATAAACCACTCCCTCTGT 60.181 43.478 0.00 0.00 0.00 3.41
3733 6129 3.420893 TGCAAATAAACCACTCCCTCTG 58.579 45.455 0.00 0.00 0.00 3.35
3734 6130 3.690460 CTGCAAATAAACCACTCCCTCT 58.310 45.455 0.00 0.00 0.00 3.69
3735 6131 2.164422 GCTGCAAATAAACCACTCCCTC 59.836 50.000 0.00 0.00 0.00 4.30
3736 6132 2.171003 GCTGCAAATAAACCACTCCCT 58.829 47.619 0.00 0.00 0.00 4.20
3737 6133 1.892474 TGCTGCAAATAAACCACTCCC 59.108 47.619 0.00 0.00 0.00 4.30
3738 6134 3.658757 TTGCTGCAAATAAACCACTCC 57.341 42.857 13.51 0.00 0.00 3.85
3739 6135 6.155827 TGTATTTGCTGCAAATAAACCACTC 58.844 36.000 36.01 25.62 44.45 3.51
3740 6136 6.095432 TGTATTTGCTGCAAATAAACCACT 57.905 33.333 36.01 19.70 44.45 4.00
3741 6137 6.777526 TTGTATTTGCTGCAAATAAACCAC 57.222 33.333 36.01 28.73 44.45 4.16
3742 6138 7.572724 GCATTTGTATTTGCTGCAAATAAACCA 60.573 33.333 36.01 28.84 45.04 3.67
3743 6139 6.742264 GCATTTGTATTTGCTGCAAATAAACC 59.258 34.615 36.01 27.20 45.04 3.27
3744 6140 7.520686 AGCATTTGTATTTGCTGCAAATAAAC 58.479 30.769 36.01 29.82 45.04 2.01
3807 6203 9.948964 GGTAAAGTTAGATTAGGGTTTTCTACA 57.051 33.333 0.00 0.00 0.00 2.74
3817 6213 9.257651 CCGTGAAATAGGTAAAGTTAGATTAGG 57.742 37.037 0.00 0.00 0.00 2.69
3818 6214 9.257651 CCCGTGAAATAGGTAAAGTTAGATTAG 57.742 37.037 0.00 0.00 0.00 1.73
3819 6215 8.206189 CCCCGTGAAATAGGTAAAGTTAGATTA 58.794 37.037 0.00 0.00 0.00 1.75
3820 6216 7.052248 CCCCGTGAAATAGGTAAAGTTAGATT 58.948 38.462 0.00 0.00 0.00 2.40
3821 6217 6.408891 CCCCCGTGAAATAGGTAAAGTTAGAT 60.409 42.308 0.00 0.00 0.00 1.98
3823 6219 5.121105 CCCCCGTGAAATAGGTAAAGTTAG 58.879 45.833 0.00 0.00 0.00 2.34
3824 6220 5.101648 CCCCCGTGAAATAGGTAAAGTTA 57.898 43.478 0.00 0.00 0.00 2.24
3843 6239 1.869824 TTCAACCACATAGGGCCCCC 61.870 60.000 21.43 0.00 43.89 5.40
3844 6240 0.683179 GTTCAACCACATAGGGCCCC 60.683 60.000 21.43 0.00 43.89 5.80
3845 6241 0.331616 AGTTCAACCACATAGGGCCC 59.668 55.000 16.46 16.46 43.89 5.80
3846 6242 2.215942 AAGTTCAACCACATAGGGCC 57.784 50.000 0.00 0.00 43.89 5.80
3847 6243 3.320826 ACAAAAGTTCAACCACATAGGGC 59.679 43.478 0.00 0.00 43.89 5.19
3851 6247 7.339721 TGGTTAAGACAAAAGTTCAACCACATA 59.660 33.333 0.00 0.00 39.10 2.29
3856 6252 6.445357 TCTGGTTAAGACAAAAGTTCAACC 57.555 37.500 0.00 0.00 35.58 3.77
3871 6267 4.141287 CACAGGTTGATTGGTCTGGTTAA 58.859 43.478 0.00 0.00 0.00 2.01
3875 6271 1.202927 ACCACAGGTTGATTGGTCTGG 60.203 52.381 0.00 0.00 39.57 3.86
3915 6311 8.801299 TGACAAATTGGAAGCACTCATAATAAA 58.199 29.630 0.00 0.00 0.00 1.40
3916 6312 8.243426 GTGACAAATTGGAAGCACTCATAATAA 58.757 33.333 0.00 0.00 0.00 1.40
3924 6320 3.446873 TGTTGTGACAAATTGGAAGCACT 59.553 39.130 0.00 0.00 31.49 4.40
3928 6324 3.384467 AGGGTGTTGTGACAAATTGGAAG 59.616 43.478 0.00 0.00 37.57 3.46
3929 6325 3.370104 AGGGTGTTGTGACAAATTGGAA 58.630 40.909 0.00 0.00 37.57 3.53
3930 6326 3.025322 AGGGTGTTGTGACAAATTGGA 57.975 42.857 0.00 0.00 37.57 3.53
3961 6372 2.299867 GGGCGCCCAATCATAATTCAAT 59.700 45.455 40.73 0.00 35.81 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.