Multiple sequence alignment - TraesCS5A01G032300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G032300 chr5A 100.000 3696 0 0 1 3696 29679512 29683207 0.000000e+00 6826.0
1 TraesCS5A01G032300 chr5A 80.420 143 24 1 255 393 22728662 22728520 5.050000e-19 106.0
2 TraesCS5A01G032300 chr5B 86.753 2929 221 81 599 3430 35528849 35531707 0.000000e+00 3105.0
3 TraesCS5A01G032300 chr5B 84.932 146 14 5 393 531 591820092 591819948 1.380000e-29 141.0
4 TraesCS5A01G032300 chr5B 84.354 147 9 9 393 531 285886168 285886028 8.330000e-27 132.0
5 TraesCS5A01G032300 chr5D 91.337 1593 74 18 2155 3696 41363281 41364860 0.000000e+00 2119.0
6 TraesCS5A01G032300 chr5D 90.068 886 61 12 1294 2169 41362200 41363068 0.000000e+00 1123.0
7 TraesCS5A01G032300 chr5D 87.576 660 65 13 586 1242 41361457 41362102 0.000000e+00 749.0
8 TraesCS5A01G032300 chr5D 85.227 176 21 5 3264 3435 543226688 543226514 3.790000e-40 176.0
9 TraesCS5A01G032300 chr5D 85.484 124 12 4 275 393 434252543 434252421 1.390000e-24 124.0
10 TraesCS5A01G032300 chr5D 92.857 84 6 0 1 84 41313992 41314075 5.010000e-24 122.0
11 TraesCS5A01G032300 chr5D 83.217 143 15 6 393 526 50811911 50812053 5.010000e-24 122.0
12 TraesCS5A01G032300 chr5D 98.507 67 1 0 120 186 41315444 41315510 6.480000e-23 119.0
13 TraesCS5A01G032300 chr2B 88.361 421 45 4 2280 2698 765061911 765061493 1.530000e-138 503.0
14 TraesCS5A01G032300 chr2B 86.857 175 20 3 3264 3435 286977443 286977269 3.770000e-45 193.0
15 TraesCS5A01G032300 chr2D 89.114 395 42 1 2304 2698 622915825 622915432 1.190000e-134 490.0
16 TraesCS5A01G032300 chr2D 84.571 175 24 3 3264 3435 485647150 485647324 1.760000e-38 171.0
17 TraesCS5A01G032300 chr2D 84.000 175 25 3 3264 3435 485603930 485604104 8.210000e-37 165.0
18 TraesCS5A01G032300 chr2A 87.970 399 40 4 2301 2698 754349765 754349374 7.230000e-127 464.0
19 TraesCS5A01G032300 chr4D 84.746 177 24 3 3262 3435 487338155 487337979 1.360000e-39 174.0
20 TraesCS5A01G032300 chr4D 84.000 175 25 3 3264 3435 447929630 447929804 8.210000e-37 165.0
21 TraesCS5A01G032300 chr4D 83.636 110 12 2 287 392 2987365 2987258 8.450000e-17 99.0
22 TraesCS5A01G032300 chr6B 84.571 175 24 3 3264 3435 515014461 515014635 1.760000e-38 171.0
23 TraesCS5A01G032300 chr6B 89.320 103 7 1 287 385 502302875 502302977 3.870000e-25 126.0
24 TraesCS5A01G032300 chr3D 84.000 175 24 3 3264 3435 84922696 84922869 8.210000e-37 165.0
25 TraesCS5A01G032300 chr3D 85.714 147 12 7 394 531 508201963 508201817 2.970000e-31 147.0
26 TraesCS5A01G032300 chr3D 82.192 146 20 3 252 393 31957979 31958122 1.800000e-23 121.0
27 TraesCS5A01G032300 chr3D 77.551 196 32 5 201 392 432137323 432137510 1.400000e-19 108.0
28 TraesCS5A01G032300 chr3D 84.685 111 10 4 255 361 1063131 1063024 1.820000e-18 104.0
29 TraesCS5A01G032300 chr7D 87.586 145 12 4 393 531 71212324 71212468 2.950000e-36 163.0
30 TraesCS5A01G032300 chr3B 84.354 147 14 5 393 531 756959003 756958858 6.440000e-28 135.0
31 TraesCS5A01G032300 chr3B 84.247 146 15 5 393 531 757199690 757199546 6.440000e-28 135.0
32 TraesCS5A01G032300 chr1A 80.556 180 25 6 190 365 565325810 565325637 3.000000e-26 130.0
33 TraesCS5A01G032300 chr1A 82.468 154 15 9 396 539 406603362 406603211 1.390000e-24 124.0
34 TraesCS5A01G032300 chrUn 86.408 103 10 1 295 393 88846241 88846343 3.900000e-20 110.0
35 TraesCS5A01G032300 chr1D 94.203 69 2 2 471 537 26559540 26559472 1.820000e-18 104.0
36 TraesCS5A01G032300 chr6D 79.592 147 16 10 393 526 461512594 461512739 3.930000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G032300 chr5A 29679512 29683207 3695 False 6826.000000 6826 100.000000 1 3696 1 chr5A.!!$F1 3695
1 TraesCS5A01G032300 chr5B 35528849 35531707 2858 False 3105.000000 3105 86.753000 599 3430 1 chr5B.!!$F1 2831
2 TraesCS5A01G032300 chr5D 41361457 41364860 3403 False 1330.333333 2119 89.660333 586 3696 3 chr5D.!!$F3 3110

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.103026 GATTTGAAATGGAGCGGGCC 59.897 55.0 0.00 0.0 0.00 5.80 F
527 528 0.107654 ATGAGCCTAGGCACCGAAAC 60.108 55.0 34.70 16.1 44.88 2.78 F
1568 1662 0.100682 CTGCAATGTGATGCTCAGGC 59.899 55.0 0.67 0.0 46.54 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1642 0.100682 CCTGAGCATCACATTGCAGC 59.899 55.0 0.00 0.00 42.56 5.25 R
1606 1700 0.442310 CATCAACGTACGCCCAACTG 59.558 55.0 16.72 3.61 0.00 3.16 R
3553 3951 0.393537 GGCATCTCCAACTCCACCAG 60.394 60.0 0.00 0.00 34.01 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.573900 TCAGTTCTCATTTCTCAGCTTCC 58.426 43.478 0.00 0.00 0.00 3.46
24 25 4.285517 TCAGTTCTCATTTCTCAGCTTCCT 59.714 41.667 0.00 0.00 0.00 3.36
25 26 4.392445 CAGTTCTCATTTCTCAGCTTCCTG 59.608 45.833 0.00 0.00 40.54 3.86
26 27 4.285517 AGTTCTCATTTCTCAGCTTCCTGA 59.714 41.667 0.00 0.00 45.54 3.86
27 28 4.897509 TCTCATTTCTCAGCTTCCTGAA 57.102 40.909 0.00 0.00 46.84 3.02
28 29 4.573900 TCTCATTTCTCAGCTTCCTGAAC 58.426 43.478 0.00 0.00 46.84 3.18
29 30 3.329386 TCATTTCTCAGCTTCCTGAACG 58.671 45.455 0.00 0.00 46.84 3.95
30 31 2.169832 TTTCTCAGCTTCCTGAACGG 57.830 50.000 0.00 0.00 46.84 4.44
31 32 0.320771 TTCTCAGCTTCCTGAACGGC 60.321 55.000 0.00 0.00 46.84 5.68
32 33 1.188219 TCTCAGCTTCCTGAACGGCT 61.188 55.000 0.00 0.00 46.84 5.52
33 34 1.018226 CTCAGCTTCCTGAACGGCTG 61.018 60.000 12.46 12.46 46.84 4.85
34 35 2.359230 AGCTTCCTGAACGGCTGC 60.359 61.111 0.00 0.00 33.50 5.25
35 36 2.669569 GCTTCCTGAACGGCTGCA 60.670 61.111 0.50 0.00 33.11 4.41
36 37 2.970974 GCTTCCTGAACGGCTGCAC 61.971 63.158 0.50 0.00 33.11 4.57
37 38 1.302033 CTTCCTGAACGGCTGCACT 60.302 57.895 0.50 0.00 0.00 4.40
38 39 0.886490 CTTCCTGAACGGCTGCACTT 60.886 55.000 0.50 0.00 0.00 3.16
39 40 1.165907 TTCCTGAACGGCTGCACTTG 61.166 55.000 0.50 0.00 0.00 3.16
40 41 1.893808 CCTGAACGGCTGCACTTGT 60.894 57.895 0.50 0.00 0.00 3.16
41 42 1.571460 CTGAACGGCTGCACTTGTC 59.429 57.895 0.50 0.00 0.00 3.18
42 43 0.882042 CTGAACGGCTGCACTTGTCT 60.882 55.000 0.50 0.00 0.00 3.41
43 44 0.463654 TGAACGGCTGCACTTGTCTT 60.464 50.000 0.50 0.00 0.00 3.01
44 45 0.663153 GAACGGCTGCACTTGTCTTT 59.337 50.000 0.50 0.00 0.00 2.52
45 46 0.663153 AACGGCTGCACTTGTCTTTC 59.337 50.000 0.50 0.00 0.00 2.62
46 47 0.179045 ACGGCTGCACTTGTCTTTCT 60.179 50.000 0.50 0.00 0.00 2.52
47 48 0.236711 CGGCTGCACTTGTCTTTCTG 59.763 55.000 0.50 0.00 0.00 3.02
48 49 1.312815 GGCTGCACTTGTCTTTCTGT 58.687 50.000 0.50 0.00 0.00 3.41
49 50 1.265365 GGCTGCACTTGTCTTTCTGTC 59.735 52.381 0.50 0.00 0.00 3.51
50 51 1.942657 GCTGCACTTGTCTTTCTGTCA 59.057 47.619 0.00 0.00 0.00 3.58
51 52 2.551459 GCTGCACTTGTCTTTCTGTCAT 59.449 45.455 0.00 0.00 0.00 3.06
52 53 3.748048 GCTGCACTTGTCTTTCTGTCATA 59.252 43.478 0.00 0.00 0.00 2.15
53 54 4.214119 GCTGCACTTGTCTTTCTGTCATAA 59.786 41.667 0.00 0.00 0.00 1.90
54 55 5.106396 GCTGCACTTGTCTTTCTGTCATAAT 60.106 40.000 0.00 0.00 0.00 1.28
55 56 6.486253 TGCACTTGTCTTTCTGTCATAATC 57.514 37.500 0.00 0.00 0.00 1.75
56 57 5.997129 TGCACTTGTCTTTCTGTCATAATCA 59.003 36.000 0.00 0.00 0.00 2.57
57 58 6.148315 TGCACTTGTCTTTCTGTCATAATCAG 59.852 38.462 0.00 0.00 0.00 2.90
58 59 6.148480 GCACTTGTCTTTCTGTCATAATCAGT 59.852 38.462 0.00 0.00 34.86 3.41
59 60 7.308229 GCACTTGTCTTTCTGTCATAATCAGTT 60.308 37.037 0.00 0.00 34.86 3.16
60 61 8.562892 CACTTGTCTTTCTGTCATAATCAGTTT 58.437 33.333 0.00 0.00 34.86 2.66
61 62 9.125026 ACTTGTCTTTCTGTCATAATCAGTTTT 57.875 29.630 0.00 0.00 34.86 2.43
62 63 9.956720 CTTGTCTTTCTGTCATAATCAGTTTTT 57.043 29.630 0.00 0.00 34.86 1.94
63 64 9.734620 TTGTCTTTCTGTCATAATCAGTTTTTG 57.265 29.630 0.00 0.00 34.86 2.44
64 65 7.862372 TGTCTTTCTGTCATAATCAGTTTTTGC 59.138 33.333 0.00 0.00 34.86 3.68
65 66 7.862372 GTCTTTCTGTCATAATCAGTTTTTGCA 59.138 33.333 0.00 0.00 34.86 4.08
66 67 8.579006 TCTTTCTGTCATAATCAGTTTTTGCAT 58.421 29.630 0.00 0.00 34.86 3.96
67 68 9.199982 CTTTCTGTCATAATCAGTTTTTGCATT 57.800 29.630 0.00 0.00 34.86 3.56
68 69 8.523523 TTCTGTCATAATCAGTTTTTGCATTG 57.476 30.769 0.00 0.00 34.86 2.82
69 70 7.660112 TCTGTCATAATCAGTTTTTGCATTGT 58.340 30.769 0.00 0.00 34.86 2.71
70 71 8.143193 TCTGTCATAATCAGTTTTTGCATTGTT 58.857 29.630 0.00 0.00 34.86 2.83
71 72 8.074474 TGTCATAATCAGTTTTTGCATTGTTG 57.926 30.769 0.00 0.00 0.00 3.33
72 73 7.710044 TGTCATAATCAGTTTTTGCATTGTTGT 59.290 29.630 0.00 0.00 0.00 3.32
73 74 9.190858 GTCATAATCAGTTTTTGCATTGTTGTA 57.809 29.630 0.00 0.00 0.00 2.41
74 75 9.755804 TCATAATCAGTTTTTGCATTGTTGTAA 57.244 25.926 0.00 0.00 0.00 2.41
76 77 9.762933 ATAATCAGTTTTTGCATTGTTGTAAGT 57.237 25.926 0.00 0.00 0.00 2.24
77 78 8.491331 AATCAGTTTTTGCATTGTTGTAAGTT 57.509 26.923 0.00 0.00 0.00 2.66
78 79 7.897575 TCAGTTTTTGCATTGTTGTAAGTTT 57.102 28.000 0.00 0.00 0.00 2.66
79 80 7.737395 TCAGTTTTTGCATTGTTGTAAGTTTG 58.263 30.769 0.00 0.00 0.00 2.93
80 81 7.386299 TCAGTTTTTGCATTGTTGTAAGTTTGT 59.614 29.630 0.00 0.00 0.00 2.83
81 82 7.478044 CAGTTTTTGCATTGTTGTAAGTTTGTG 59.522 33.333 0.00 0.00 0.00 3.33
82 83 7.386299 AGTTTTTGCATTGTTGTAAGTTTGTGA 59.614 29.630 0.00 0.00 0.00 3.58
83 84 6.639671 TTTGCATTGTTGTAAGTTTGTGAC 57.360 33.333 0.00 0.00 0.00 3.67
84 85 5.574891 TGCATTGTTGTAAGTTTGTGACT 57.425 34.783 0.00 0.00 41.47 3.41
85 86 5.339177 TGCATTGTTGTAAGTTTGTGACTG 58.661 37.500 0.00 0.00 39.00 3.51
86 87 5.105957 TGCATTGTTGTAAGTTTGTGACTGT 60.106 36.000 0.00 0.00 39.00 3.55
87 88 5.804979 GCATTGTTGTAAGTTTGTGACTGTT 59.195 36.000 0.00 0.00 39.00 3.16
88 89 6.310224 GCATTGTTGTAAGTTTGTGACTGTTT 59.690 34.615 0.00 0.00 39.00 2.83
89 90 7.486551 GCATTGTTGTAAGTTTGTGACTGTTTA 59.513 33.333 0.00 0.00 39.00 2.01
90 91 9.515020 CATTGTTGTAAGTTTGTGACTGTTTAT 57.485 29.630 0.00 0.00 39.00 1.40
92 93 9.991388 TTGTTGTAAGTTTGTGACTGTTTATAC 57.009 29.630 0.00 0.00 39.00 1.47
93 94 8.614346 TGTTGTAAGTTTGTGACTGTTTATACC 58.386 33.333 0.00 0.00 39.00 2.73
94 95 7.733402 TGTAAGTTTGTGACTGTTTATACCC 57.267 36.000 0.00 0.00 39.00 3.69
95 96 7.281098 TGTAAGTTTGTGACTGTTTATACCCA 58.719 34.615 0.00 0.00 39.00 4.51
96 97 7.940137 TGTAAGTTTGTGACTGTTTATACCCAT 59.060 33.333 0.00 0.00 39.00 4.00
97 98 7.448748 AAGTTTGTGACTGTTTATACCCATC 57.551 36.000 0.00 0.00 39.00 3.51
98 99 6.539173 AGTTTGTGACTGTTTATACCCATCA 58.461 36.000 0.00 0.00 37.17 3.07
99 100 6.655003 AGTTTGTGACTGTTTATACCCATCAG 59.345 38.462 0.00 0.00 37.17 2.90
100 101 6.367374 TTGTGACTGTTTATACCCATCAGA 57.633 37.500 0.00 0.00 0.00 3.27
101 102 6.367374 TGTGACTGTTTATACCCATCAGAA 57.633 37.500 0.00 0.00 0.00 3.02
102 103 6.774673 TGTGACTGTTTATACCCATCAGAAA 58.225 36.000 0.00 0.00 0.00 2.52
103 104 7.402054 TGTGACTGTTTATACCCATCAGAAAT 58.598 34.615 0.00 0.00 0.00 2.17
104 105 8.544622 TGTGACTGTTTATACCCATCAGAAATA 58.455 33.333 0.00 0.00 0.00 1.40
105 106 9.561069 GTGACTGTTTATACCCATCAGAAATAT 57.439 33.333 0.00 0.00 0.00 1.28
117 118 9.512588 ACCCATCAGAAATATTATCATCAGTTC 57.487 33.333 0.00 0.00 0.00 3.01
118 119 8.954350 CCCATCAGAAATATTATCATCAGTTCC 58.046 37.037 0.00 0.00 0.00 3.62
119 120 9.736414 CCATCAGAAATATTATCATCAGTTCCT 57.264 33.333 0.00 0.00 0.00 3.36
131 132 3.918294 TCAGTTCCTGATGATGATGCA 57.082 42.857 0.00 0.00 35.39 3.96
132 133 4.224991 TCAGTTCCTGATGATGATGCAA 57.775 40.909 0.00 0.00 35.39 4.08
133 134 4.591929 TCAGTTCCTGATGATGATGCAAA 58.408 39.130 0.00 0.00 35.39 3.68
134 135 5.198207 TCAGTTCCTGATGATGATGCAAAT 58.802 37.500 0.00 0.00 35.39 2.32
135 136 6.358991 TCAGTTCCTGATGATGATGCAAATA 58.641 36.000 0.00 0.00 35.39 1.40
136 137 6.261603 TCAGTTCCTGATGATGATGCAAATAC 59.738 38.462 0.00 0.00 35.39 1.89
137 138 6.262496 CAGTTCCTGATGATGATGCAAATACT 59.738 38.462 0.00 0.00 32.44 2.12
138 139 7.443272 CAGTTCCTGATGATGATGCAAATACTA 59.557 37.037 0.00 0.00 32.44 1.82
139 140 8.162085 AGTTCCTGATGATGATGCAAATACTAT 58.838 33.333 0.00 0.00 0.00 2.12
140 141 9.440773 GTTCCTGATGATGATGCAAATACTATA 57.559 33.333 0.00 0.00 0.00 1.31
168 169 7.951530 AATCACATAAAGAAAGCAACAAAGG 57.048 32.000 0.00 0.00 0.00 3.11
169 170 6.707440 TCACATAAAGAAAGCAACAAAGGA 57.293 33.333 0.00 0.00 0.00 3.36
170 171 6.738114 TCACATAAAGAAAGCAACAAAGGAG 58.262 36.000 0.00 0.00 0.00 3.69
171 172 6.545666 TCACATAAAGAAAGCAACAAAGGAGA 59.454 34.615 0.00 0.00 0.00 3.71
172 173 6.638468 CACATAAAGAAAGCAACAAAGGAGAC 59.362 38.462 0.00 0.00 0.00 3.36
173 174 6.321181 ACATAAAGAAAGCAACAAAGGAGACA 59.679 34.615 0.00 0.00 0.00 3.41
174 175 5.659440 AAAGAAAGCAACAAAGGAGACAA 57.341 34.783 0.00 0.00 0.00 3.18
175 176 4.907879 AGAAAGCAACAAAGGAGACAAG 57.092 40.909 0.00 0.00 0.00 3.16
176 177 3.633986 AGAAAGCAACAAAGGAGACAAGG 59.366 43.478 0.00 0.00 0.00 3.61
177 178 1.986882 AGCAACAAAGGAGACAAGGG 58.013 50.000 0.00 0.00 0.00 3.95
178 179 0.315251 GCAACAAAGGAGACAAGGGC 59.685 55.000 0.00 0.00 0.00 5.19
179 180 0.961753 CAACAAAGGAGACAAGGGCC 59.038 55.000 0.00 0.00 0.00 5.80
180 181 0.555769 AACAAAGGAGACAAGGGCCA 59.444 50.000 6.18 0.00 0.00 5.36
181 182 0.555769 ACAAAGGAGACAAGGGCCAA 59.444 50.000 6.18 0.00 0.00 4.52
182 183 0.961753 CAAAGGAGACAAGGGCCAAC 59.038 55.000 6.18 0.00 0.00 3.77
183 184 0.853530 AAAGGAGACAAGGGCCAACT 59.146 50.000 6.18 0.00 0.00 3.16
184 185 0.111253 AAGGAGACAAGGGCCAACTG 59.889 55.000 6.18 2.04 0.00 3.16
185 186 1.303643 GGAGACAAGGGCCAACTGG 60.304 63.158 6.18 0.00 38.53 4.00
186 187 1.303643 GAGACAAGGGCCAACTGGG 60.304 63.158 6.18 0.00 40.85 4.45
187 188 1.774217 AGACAAGGGCCAACTGGGA 60.774 57.895 6.18 0.00 40.01 4.37
193 194 4.167597 GGCCAACTGGGACGAAAA 57.832 55.556 0.00 0.00 40.01 2.29
194 195 2.653557 GGCCAACTGGGACGAAAAT 58.346 52.632 0.00 0.00 40.01 1.82
195 196 0.526211 GGCCAACTGGGACGAAAATC 59.474 55.000 0.00 0.00 40.01 2.17
196 197 0.526211 GCCAACTGGGACGAAAATCC 59.474 55.000 0.00 0.00 40.01 3.01
197 198 1.904287 CCAACTGGGACGAAAATCCA 58.096 50.000 0.00 0.00 40.96 3.41
198 199 2.446435 CCAACTGGGACGAAAATCCAT 58.554 47.619 0.00 0.00 40.96 3.41
199 200 2.423538 CCAACTGGGACGAAAATCCATC 59.576 50.000 0.00 0.00 40.96 3.51
200 201 3.347216 CAACTGGGACGAAAATCCATCT 58.653 45.455 0.00 0.00 40.96 2.90
201 202 3.268023 ACTGGGACGAAAATCCATCTC 57.732 47.619 0.00 0.00 40.96 2.75
202 203 2.840651 ACTGGGACGAAAATCCATCTCT 59.159 45.455 0.00 0.00 40.96 3.10
203 204 3.201290 CTGGGACGAAAATCCATCTCTG 58.799 50.000 0.00 0.00 40.96 3.35
204 205 1.943340 GGGACGAAAATCCATCTCTGC 59.057 52.381 0.00 0.00 40.96 4.26
205 206 2.632377 GGACGAAAATCCATCTCTGCA 58.368 47.619 0.00 0.00 38.77 4.41
206 207 2.611292 GGACGAAAATCCATCTCTGCAG 59.389 50.000 7.63 7.63 38.77 4.41
207 208 2.012673 ACGAAAATCCATCTCTGCAGC 58.987 47.619 9.47 0.00 0.00 5.25
208 209 1.332997 CGAAAATCCATCTCTGCAGCC 59.667 52.381 9.47 0.00 0.00 4.85
209 210 1.332997 GAAAATCCATCTCTGCAGCCG 59.667 52.381 9.47 2.34 0.00 5.52
210 211 1.099879 AAATCCATCTCTGCAGCCGC 61.100 55.000 9.47 0.00 39.24 6.53
211 212 3.804153 ATCCATCTCTGCAGCCGCG 62.804 63.158 9.47 0.00 42.97 6.46
214 215 4.887987 ATCTCTGCAGCCGCGCTC 62.888 66.667 9.47 0.00 42.97 5.03
221 222 3.711842 CAGCCGCGCTCACGAAAA 61.712 61.111 5.56 0.00 43.93 2.29
222 223 2.970324 AGCCGCGCTCACGAAAAA 60.970 55.556 5.56 0.00 43.93 1.94
280 281 6.676237 AAAATCCAATTTCTTTTTGTGCGT 57.324 29.167 0.00 0.00 0.00 5.24
281 282 6.676237 AAATCCAATTTCTTTTTGTGCGTT 57.324 29.167 0.00 0.00 0.00 4.84
282 283 7.778470 AAATCCAATTTCTTTTTGTGCGTTA 57.222 28.000 0.00 0.00 0.00 3.18
283 284 6.763303 ATCCAATTTCTTTTTGTGCGTTAC 57.237 33.333 0.00 0.00 0.00 2.50
284 285 5.651530 TCCAATTTCTTTTTGTGCGTTACA 58.348 33.333 0.00 0.00 37.56 2.41
295 296 4.963237 TGTGCGTTACAAAATTTGATGC 57.037 36.364 13.19 8.49 36.06 3.91
296 297 4.363138 TGTGCGTTACAAAATTTGATGCA 58.637 34.783 13.19 10.96 36.06 3.96
297 298 4.987285 TGTGCGTTACAAAATTTGATGCAT 59.013 33.333 13.19 0.00 36.06 3.96
298 299 5.107568 TGTGCGTTACAAAATTTGATGCATG 60.108 36.000 13.19 0.00 36.06 4.06
299 300 5.118357 GTGCGTTACAAAATTTGATGCATGA 59.882 36.000 13.19 0.00 32.88 3.07
300 301 5.345472 TGCGTTACAAAATTTGATGCATGAG 59.655 36.000 13.19 0.00 0.00 2.90
301 302 5.220265 GCGTTACAAAATTTGATGCATGAGG 60.220 40.000 13.19 0.00 0.00 3.86
302 303 5.863397 CGTTACAAAATTTGATGCATGAGGT 59.137 36.000 13.19 0.00 0.00 3.85
303 304 6.365789 CGTTACAAAATTTGATGCATGAGGTT 59.634 34.615 13.19 0.00 0.00 3.50
304 305 7.410728 CGTTACAAAATTTGATGCATGAGGTTC 60.411 37.037 13.19 0.00 0.00 3.62
305 306 5.856156 ACAAAATTTGATGCATGAGGTTCA 58.144 33.333 13.19 0.00 0.00 3.18
306 307 5.697633 ACAAAATTTGATGCATGAGGTTCAC 59.302 36.000 13.19 0.00 0.00 3.18
307 308 5.733620 AAATTTGATGCATGAGGTTCACT 57.266 34.783 2.46 0.00 0.00 3.41
308 309 4.978083 ATTTGATGCATGAGGTTCACTC 57.022 40.909 2.46 0.00 46.78 3.51
309 310 2.408271 TGATGCATGAGGTTCACTCC 57.592 50.000 2.46 0.00 46.01 3.85
310 311 1.629861 TGATGCATGAGGTTCACTCCA 59.370 47.619 2.46 0.00 46.01 3.86
311 312 2.040145 TGATGCATGAGGTTCACTCCAA 59.960 45.455 2.46 0.00 46.01 3.53
312 313 2.885135 TGCATGAGGTTCACTCCAAT 57.115 45.000 0.00 0.00 46.01 3.16
313 314 3.159213 TGCATGAGGTTCACTCCAATT 57.841 42.857 0.00 0.00 46.01 2.32
314 315 3.499338 TGCATGAGGTTCACTCCAATTT 58.501 40.909 0.00 0.00 46.01 1.82
315 316 3.896888 TGCATGAGGTTCACTCCAATTTT 59.103 39.130 0.00 0.00 46.01 1.82
316 317 4.022068 TGCATGAGGTTCACTCCAATTTTC 60.022 41.667 0.00 0.00 46.01 2.29
317 318 4.022068 GCATGAGGTTCACTCCAATTTTCA 60.022 41.667 0.00 0.00 46.01 2.69
318 319 5.509501 GCATGAGGTTCACTCCAATTTTCAA 60.510 40.000 0.00 0.00 46.01 2.69
319 320 6.514947 CATGAGGTTCACTCCAATTTTCAAA 58.485 36.000 0.00 0.00 46.01 2.69
320 321 6.729690 TGAGGTTCACTCCAATTTTCAAAT 57.270 33.333 0.00 0.00 46.01 2.32
321 322 6.748132 TGAGGTTCACTCCAATTTTCAAATC 58.252 36.000 0.00 0.00 46.01 2.17
322 323 6.323482 TGAGGTTCACTCCAATTTTCAAATCA 59.677 34.615 0.00 0.00 46.01 2.57
323 324 7.015487 TGAGGTTCACTCCAATTTTCAAATCAT 59.985 33.333 0.00 0.00 46.01 2.45
324 325 8.421249 AGGTTCACTCCAATTTTCAAATCATA 57.579 30.769 0.00 0.00 0.00 2.15
325 326 8.306761 AGGTTCACTCCAATTTTCAAATCATAC 58.693 33.333 0.00 0.00 0.00 2.39
326 327 8.087750 GGTTCACTCCAATTTTCAAATCATACA 58.912 33.333 0.00 0.00 0.00 2.29
327 328 9.643693 GTTCACTCCAATTTTCAAATCATACAT 57.356 29.630 0.00 0.00 0.00 2.29
328 329 9.859427 TTCACTCCAATTTTCAAATCATACATC 57.141 29.630 0.00 0.00 0.00 3.06
329 330 9.246670 TCACTCCAATTTTCAAATCATACATCT 57.753 29.630 0.00 0.00 0.00 2.90
330 331 9.297586 CACTCCAATTTTCAAATCATACATCTG 57.702 33.333 0.00 0.00 0.00 2.90
331 332 9.246670 ACTCCAATTTTCAAATCATACATCTGA 57.753 29.630 0.00 0.00 0.00 3.27
333 334 9.859427 TCCAATTTTCAAATCATACATCTGAAC 57.141 29.630 0.00 0.00 0.00 3.18
334 335 9.642327 CCAATTTTCAAATCATACATCTGAACA 57.358 29.630 0.00 0.00 0.00 3.18
336 337 8.922058 ATTTTCAAATCATACATCTGAACAGC 57.078 30.769 0.00 0.00 0.00 4.40
337 338 7.692460 TTTCAAATCATACATCTGAACAGCT 57.308 32.000 0.00 0.00 0.00 4.24
338 339 6.915544 TCAAATCATACATCTGAACAGCTC 57.084 37.500 0.00 0.00 0.00 4.09
339 340 6.647229 TCAAATCATACATCTGAACAGCTCT 58.353 36.000 0.00 0.00 0.00 4.09
340 341 6.760298 TCAAATCATACATCTGAACAGCTCTC 59.240 38.462 0.00 0.00 0.00 3.20
341 342 4.298744 TCATACATCTGAACAGCTCTCG 57.701 45.455 0.00 0.00 0.00 4.04
342 343 3.067320 TCATACATCTGAACAGCTCTCGG 59.933 47.826 0.00 0.00 0.00 4.63
343 344 0.108424 ACATCTGAACAGCTCTCGGC 60.108 55.000 0.00 0.00 42.19 5.54
344 345 0.108472 CATCTGAACAGCTCTCGGCA 60.108 55.000 0.00 0.00 44.79 5.69
345 346 0.610174 ATCTGAACAGCTCTCGGCAA 59.390 50.000 0.00 0.00 44.79 4.52
346 347 0.392706 TCTGAACAGCTCTCGGCAAA 59.607 50.000 0.00 0.00 44.79 3.68
347 348 1.202639 TCTGAACAGCTCTCGGCAAAA 60.203 47.619 0.00 0.00 44.79 2.44
348 349 1.603802 CTGAACAGCTCTCGGCAAAAA 59.396 47.619 0.00 0.00 44.79 1.94
366 367 4.687901 AAAAAGACAAATTGGGGGTCTG 57.312 40.909 0.00 0.00 40.80 3.51
367 368 1.632589 AAGACAAATTGGGGGTCTGC 58.367 50.000 0.00 0.00 40.80 4.26
368 369 0.482446 AGACAAATTGGGGGTCTGCA 59.518 50.000 0.00 0.00 40.21 4.41
369 370 1.133199 AGACAAATTGGGGGTCTGCAA 60.133 47.619 0.00 0.00 40.21 4.08
370 371 1.691434 GACAAATTGGGGGTCTGCAAA 59.309 47.619 0.00 0.00 0.00 3.68
371 372 2.103941 GACAAATTGGGGGTCTGCAAAA 59.896 45.455 0.00 0.00 0.00 2.44
372 373 2.507471 ACAAATTGGGGGTCTGCAAAAA 59.493 40.909 0.00 0.00 0.00 1.94
395 396 8.633075 AAAAGTTTGTTGTTCATGTACTGATG 57.367 30.769 4.01 0.00 32.72 3.07
396 397 6.942532 AGTTTGTTGTTCATGTACTGATGT 57.057 33.333 4.01 0.00 32.72 3.06
397 398 6.959361 AGTTTGTTGTTCATGTACTGATGTC 58.041 36.000 4.01 0.00 32.72 3.06
398 399 5.940192 TTGTTGTTCATGTACTGATGTCC 57.060 39.130 4.01 0.00 32.72 4.02
399 400 4.967036 TGTTGTTCATGTACTGATGTCCA 58.033 39.130 4.01 0.00 32.72 4.02
400 401 5.372373 TGTTGTTCATGTACTGATGTCCAA 58.628 37.500 4.01 0.00 32.72 3.53
401 402 5.825151 TGTTGTTCATGTACTGATGTCCAAA 59.175 36.000 4.01 0.00 32.72 3.28
402 403 6.489700 TGTTGTTCATGTACTGATGTCCAAAT 59.510 34.615 4.01 0.00 32.72 2.32
403 404 6.499234 TGTTCATGTACTGATGTCCAAATG 57.501 37.500 4.01 0.00 32.72 2.32
404 405 6.237154 TGTTCATGTACTGATGTCCAAATGA 58.763 36.000 4.01 0.00 32.72 2.57
405 406 6.885918 TGTTCATGTACTGATGTCCAAATGAT 59.114 34.615 4.01 0.00 32.72 2.45
406 407 7.394077 TGTTCATGTACTGATGTCCAAATGATT 59.606 33.333 4.01 0.00 32.72 2.57
407 408 7.943079 TCATGTACTGATGTCCAAATGATTT 57.057 32.000 0.00 0.00 0.00 2.17
408 409 7.764331 TCATGTACTGATGTCCAAATGATTTG 58.236 34.615 10.84 10.84 40.32 2.32
409 410 7.611079 TCATGTACTGATGTCCAAATGATTTGA 59.389 33.333 18.82 0.00 43.26 2.69
410 411 7.757941 TGTACTGATGTCCAAATGATTTGAA 57.242 32.000 18.82 0.00 43.26 2.69
411 412 8.175925 TGTACTGATGTCCAAATGATTTGAAA 57.824 30.769 18.82 4.37 43.26 2.69
412 413 8.805175 TGTACTGATGTCCAAATGATTTGAAAT 58.195 29.630 18.82 9.08 43.26 2.17
413 414 9.079833 GTACTGATGTCCAAATGATTTGAAATG 57.920 33.333 18.82 2.80 43.26 2.32
414 415 7.101054 ACTGATGTCCAAATGATTTGAAATGG 58.899 34.615 18.82 3.02 43.26 3.16
415 416 7.038870 ACTGATGTCCAAATGATTTGAAATGGA 60.039 33.333 18.82 5.49 43.26 3.41
416 417 7.324935 TGATGTCCAAATGATTTGAAATGGAG 58.675 34.615 18.82 1.07 43.26 3.86
417 418 5.481105 TGTCCAAATGATTTGAAATGGAGC 58.519 37.500 18.82 4.54 43.26 4.70
418 419 4.563976 GTCCAAATGATTTGAAATGGAGCG 59.436 41.667 18.82 0.00 43.26 5.03
419 420 3.866910 CCAAATGATTTGAAATGGAGCGG 59.133 43.478 18.82 0.00 43.26 5.52
420 421 3.806625 AATGATTTGAAATGGAGCGGG 57.193 42.857 0.00 0.00 0.00 6.13
421 422 0.817013 TGATTTGAAATGGAGCGGGC 59.183 50.000 0.00 0.00 0.00 6.13
422 423 0.103026 GATTTGAAATGGAGCGGGCC 59.897 55.000 0.00 0.00 0.00 5.80
423 424 0.324645 ATTTGAAATGGAGCGGGCCT 60.325 50.000 0.84 0.00 0.00 5.19
424 425 0.965363 TTTGAAATGGAGCGGGCCTC 60.965 55.000 0.84 0.00 39.98 4.70
425 426 2.135903 TTGAAATGGAGCGGGCCTCA 62.136 55.000 0.84 0.00 42.62 3.86
426 427 2.044946 AAATGGAGCGGGCCTCAC 60.045 61.111 0.84 0.00 42.62 3.51
427 428 3.976701 AAATGGAGCGGGCCTCACG 62.977 63.158 0.84 0.00 42.62 4.35
434 435 2.745884 CGGGCCTCACGCATCAAA 60.746 61.111 0.84 0.00 40.31 2.69
435 436 2.753966 CGGGCCTCACGCATCAAAG 61.754 63.158 0.84 0.00 40.31 2.77
436 437 1.675641 GGGCCTCACGCATCAAAGT 60.676 57.895 0.84 0.00 40.31 2.66
437 438 1.244019 GGGCCTCACGCATCAAAGTT 61.244 55.000 0.84 0.00 40.31 2.66
438 439 0.598065 GGCCTCACGCATCAAAGTTT 59.402 50.000 0.00 0.00 40.31 2.66
439 440 1.401539 GGCCTCACGCATCAAAGTTTC 60.402 52.381 0.00 0.00 40.31 2.78
440 441 1.537202 GCCTCACGCATCAAAGTTTCT 59.463 47.619 0.00 0.00 37.47 2.52
441 442 2.742053 GCCTCACGCATCAAAGTTTCTA 59.258 45.455 0.00 0.00 37.47 2.10
442 443 3.424962 GCCTCACGCATCAAAGTTTCTAC 60.425 47.826 0.00 0.00 37.47 2.59
443 444 3.125316 CCTCACGCATCAAAGTTTCTACC 59.875 47.826 0.00 0.00 0.00 3.18
444 445 2.734606 TCACGCATCAAAGTTTCTACCG 59.265 45.455 0.00 0.00 0.00 4.02
445 446 1.463444 ACGCATCAAAGTTTCTACCGC 59.537 47.619 0.00 0.00 0.00 5.68
446 447 1.463056 CGCATCAAAGTTTCTACCGCA 59.537 47.619 0.00 0.00 0.00 5.69
447 448 2.724839 CGCATCAAAGTTTCTACCGCAC 60.725 50.000 0.00 0.00 0.00 5.34
448 449 2.225491 GCATCAAAGTTTCTACCGCACA 59.775 45.455 0.00 0.00 0.00 4.57
449 450 3.304391 GCATCAAAGTTTCTACCGCACAA 60.304 43.478 0.00 0.00 0.00 3.33
450 451 4.791411 GCATCAAAGTTTCTACCGCACAAA 60.791 41.667 0.00 0.00 0.00 2.83
451 452 4.966965 TCAAAGTTTCTACCGCACAAAA 57.033 36.364 0.00 0.00 0.00 2.44
452 453 5.312120 TCAAAGTTTCTACCGCACAAAAA 57.688 34.783 0.00 0.00 0.00 1.94
508 509 2.642154 TTTTTCTAACCGGGTGCAGA 57.358 45.000 0.00 3.87 0.00 4.26
509 510 2.871096 TTTTCTAACCGGGTGCAGAT 57.129 45.000 0.00 0.00 0.00 2.90
510 511 2.107950 TTTCTAACCGGGTGCAGATG 57.892 50.000 0.00 0.00 0.00 2.90
511 512 1.271856 TTCTAACCGGGTGCAGATGA 58.728 50.000 0.00 0.00 0.00 2.92
512 513 0.824109 TCTAACCGGGTGCAGATGAG 59.176 55.000 0.00 0.00 0.00 2.90
513 514 0.811616 CTAACCGGGTGCAGATGAGC 60.812 60.000 0.00 0.00 0.00 4.26
514 515 2.252072 TAACCGGGTGCAGATGAGCC 62.252 60.000 0.00 0.00 0.00 4.70
515 516 3.790437 CCGGGTGCAGATGAGCCT 61.790 66.667 0.00 0.00 0.00 4.58
516 517 2.434843 CCGGGTGCAGATGAGCCTA 61.435 63.158 0.00 0.00 0.00 3.93
517 518 1.068753 CGGGTGCAGATGAGCCTAG 59.931 63.158 0.00 0.00 0.00 3.02
518 519 1.449353 GGGTGCAGATGAGCCTAGG 59.551 63.158 3.67 3.67 0.00 3.02
519 520 1.227793 GGTGCAGATGAGCCTAGGC 60.228 63.158 27.19 27.19 42.33 3.93
520 521 1.524002 GTGCAGATGAGCCTAGGCA 59.476 57.895 34.70 16.70 44.88 4.75
521 522 0.813210 GTGCAGATGAGCCTAGGCAC 60.813 60.000 34.70 28.76 43.78 5.01
522 523 1.227793 GCAGATGAGCCTAGGCACC 60.228 63.158 34.70 24.85 44.88 5.01
523 524 1.068753 CAGATGAGCCTAGGCACCG 59.931 63.158 34.70 13.58 44.88 4.94
524 525 1.075970 AGATGAGCCTAGGCACCGA 60.076 57.895 34.70 14.85 44.88 4.69
525 526 0.687757 AGATGAGCCTAGGCACCGAA 60.688 55.000 34.70 14.09 44.88 4.30
526 527 0.178068 GATGAGCCTAGGCACCGAAA 59.822 55.000 34.70 13.72 44.88 3.46
527 528 0.107654 ATGAGCCTAGGCACCGAAAC 60.108 55.000 34.70 16.10 44.88 2.78
528 529 1.810030 GAGCCTAGGCACCGAAACG 60.810 63.158 34.70 0.00 44.88 3.60
529 530 3.497031 GCCTAGGCACCGAAACGC 61.497 66.667 29.33 0.00 41.49 4.84
535 536 4.811761 GCACCGAAACGCCGCATC 62.812 66.667 0.00 0.00 0.00 3.91
536 537 4.160635 CACCGAAACGCCGCATCC 62.161 66.667 0.00 0.00 0.00 3.51
539 540 3.427425 CGAAACGCCGCATCCCAA 61.427 61.111 0.00 0.00 0.00 4.12
540 541 2.178273 GAAACGCCGCATCCCAAC 59.822 61.111 0.00 0.00 0.00 3.77
541 542 2.282180 AAACGCCGCATCCCAACT 60.282 55.556 0.00 0.00 0.00 3.16
542 543 2.527547 GAAACGCCGCATCCCAACTG 62.528 60.000 0.00 0.00 0.00 3.16
557 558 6.134535 TCCCAACTGGAAATATTACTGTGT 57.865 37.500 0.00 0.00 41.40 3.72
558 559 7.260387 TCCCAACTGGAAATATTACTGTGTA 57.740 36.000 0.00 0.00 41.40 2.90
559 560 7.107542 TCCCAACTGGAAATATTACTGTGTAC 58.892 38.462 0.00 0.00 41.40 2.90
560 561 7.037873 TCCCAACTGGAAATATTACTGTGTACT 60.038 37.037 0.00 0.00 41.40 2.73
561 562 7.610305 CCCAACTGGAAATATTACTGTGTACTT 59.390 37.037 0.00 0.00 37.39 2.24
562 563 8.665685 CCAACTGGAAATATTACTGTGTACTTC 58.334 37.037 0.00 0.00 37.39 3.01
563 564 9.436957 CAACTGGAAATATTACTGTGTACTTCT 57.563 33.333 0.00 0.00 0.00 2.85
564 565 9.654663 AACTGGAAATATTACTGTGTACTTCTC 57.345 33.333 0.00 0.00 0.00 2.87
565 566 8.812972 ACTGGAAATATTACTGTGTACTTCTCA 58.187 33.333 0.00 0.00 0.00 3.27
566 567 9.653287 CTGGAAATATTACTGTGTACTTCTCAA 57.347 33.333 0.00 0.00 0.00 3.02
571 572 9.998106 AATATTACTGTGTACTTCTCAAACTGT 57.002 29.630 0.00 0.00 0.00 3.55
573 574 8.813643 ATTACTGTGTACTTCTCAAACTGTAC 57.186 34.615 0.00 0.00 36.69 2.90
574 575 6.216801 ACTGTGTACTTCTCAAACTGTACA 57.783 37.500 0.00 0.00 41.66 2.90
578 579 5.968254 TGTACTTCTCAAACTGTACACACA 58.032 37.500 0.00 0.00 39.85 3.72
579 580 5.808540 TGTACTTCTCAAACTGTACACACAC 59.191 40.000 0.00 0.00 39.85 3.82
580 581 5.086104 ACTTCTCAAACTGTACACACACT 57.914 39.130 0.00 0.00 0.00 3.55
581 582 4.870426 ACTTCTCAAACTGTACACACACTG 59.130 41.667 0.00 0.00 0.00 3.66
582 583 3.194861 TCTCAAACTGTACACACACTGC 58.805 45.455 0.00 0.00 0.00 4.40
583 584 2.285083 TCAAACTGTACACACACTGCC 58.715 47.619 0.00 0.00 0.00 4.85
584 585 2.013400 CAAACTGTACACACACTGCCA 58.987 47.619 0.00 0.00 0.00 4.92
609 610 9.116067 CATTGAGGATTTTATTGCCATTCATTT 57.884 29.630 0.00 0.00 0.00 2.32
618 619 0.614812 GCCATTCATTTGTGGGCCTT 59.385 50.000 4.53 0.00 38.70 4.35
619 620 1.003464 GCCATTCATTTGTGGGCCTTT 59.997 47.619 4.53 0.00 38.70 3.11
623 624 2.094100 TCATTTGTGGGCCTTTTGGA 57.906 45.000 4.53 0.00 44.07 3.53
633 634 2.833244 CCTTTTGGACAAGGCCCAA 58.167 52.632 0.00 0.00 44.07 4.12
636 637 1.341209 CTTTTGGACAAGGCCCAAGAC 59.659 52.381 0.00 0.00 43.72 3.01
697 709 2.289945 GCAGAAGGATCCTCTGTGTGTT 60.290 50.000 27.66 9.76 34.27 3.32
698 710 3.332919 CAGAAGGATCCTCTGTGTGTTG 58.667 50.000 16.52 1.46 0.00 3.33
699 711 2.975489 AGAAGGATCCTCTGTGTGTTGT 59.025 45.455 16.52 0.00 0.00 3.32
700 712 4.021104 CAGAAGGATCCTCTGTGTGTTGTA 60.021 45.833 16.52 0.00 0.00 2.41
702 714 5.249393 AGAAGGATCCTCTGTGTGTTGTATT 59.751 40.000 16.52 0.00 0.00 1.89
707 719 3.260884 TCCTCTGTGTGTTGTATTCCCTC 59.739 47.826 0.00 0.00 0.00 4.30
713 725 1.212195 GTGTTGTATTCCCTCTCCCCC 59.788 57.143 0.00 0.00 0.00 5.40
765 781 1.893315 CTCATTTCCCTCACCCCCTA 58.107 55.000 0.00 0.00 0.00 3.53
769 785 3.211232 TCATTTCCCTCACCCCCTATCTA 59.789 47.826 0.00 0.00 0.00 1.98
773 789 3.079854 TCCCTCACCCCCTATCTATCTT 58.920 50.000 0.00 0.00 0.00 2.40
868 897 2.019951 CGACGAGGTTGGTTGGTCG 61.020 63.158 0.00 0.00 43.43 4.79
916 948 1.206831 GGTTCGCGTTCTTCTTGCC 59.793 57.895 5.77 0.00 0.00 4.52
954 986 2.762234 CGTCGGCTCTAACCTCGCT 61.762 63.158 0.00 0.00 0.00 4.93
969 1001 1.153628 CGCTCCGGGATTTCTCGTT 60.154 57.895 0.00 0.00 0.00 3.85
984 1016 5.514274 TTCTCGTTTGCAGGAAATTCTTT 57.486 34.783 0.00 0.00 0.00 2.52
1103 1139 1.140312 AAGTCCTTGGGCAGTGAGAA 58.860 50.000 0.00 0.00 0.00 2.87
1109 1145 3.573967 TCCTTGGGCAGTGAGAATTTTTC 59.426 43.478 0.00 0.00 0.00 2.29
1119 1155 7.752686 GGCAGTGAGAATTTTTCTTTCTATGAC 59.247 37.037 0.00 0.00 40.87 3.06
1120 1156 7.752686 GCAGTGAGAATTTTTCTTTCTATGACC 59.247 37.037 0.00 0.00 40.87 4.02
1137 1173 2.128507 CCCCCACTCGAGAGGTAGC 61.129 68.421 24.73 0.00 0.00 3.58
1138 1174 1.379977 CCCCACTCGAGAGGTAGCA 60.380 63.158 24.73 0.00 0.00 3.49
1139 1175 1.388065 CCCCACTCGAGAGGTAGCAG 61.388 65.000 24.73 10.86 0.00 4.24
1140 1176 1.435515 CCACTCGAGAGGTAGCAGC 59.564 63.158 21.68 0.00 0.00 5.25
1146 1182 2.423892 CTCGAGAGGTAGCAGCAGTAAA 59.576 50.000 6.58 0.00 0.00 2.01
1171 1207 7.636150 AAAGAATCACCAGTTCATATGAAGG 57.364 36.000 18.47 18.14 34.27 3.46
1196 1232 0.179032 TGTTTCACCCGCTGTCATGT 60.179 50.000 0.00 0.00 0.00 3.21
1210 1246 1.000274 GTCATGTTGAAACCCCTGTGC 60.000 52.381 0.00 0.00 0.00 4.57
1248 1288 8.254178 CTGATGAATCAGCTAAAGGACATATC 57.746 38.462 7.35 0.00 46.63 1.63
1249 1289 7.971201 TGATGAATCAGCTAAAGGACATATCT 58.029 34.615 0.00 0.00 32.11 1.98
1257 1328 8.874156 TCAGCTAAAGGACATATCTGTATCATT 58.126 33.333 0.00 0.00 35.14 2.57
1292 1363 9.967451 TTAACCTTGGACAAAATATCATGACTA 57.033 29.630 0.00 0.00 0.00 2.59
1314 1400 4.199432 TGGTTCACATTGTTTGTTTGCT 57.801 36.364 0.00 0.00 36.00 3.91
1358 1449 2.034066 ACGTGGCCAGGTGGATTG 59.966 61.111 29.39 3.65 37.39 2.67
1359 1450 3.443045 CGTGGCCAGGTGGATTGC 61.443 66.667 17.47 0.00 37.39 3.56
1429 1520 1.017387 CTGGTTCCTTAAGATGCGGC 58.983 55.000 3.36 0.00 0.00 6.53
1467 1559 6.118852 GTGAGAAAAGATATCTTGGAAGCCT 58.881 40.000 18.61 9.30 36.12 4.58
1486 1578 5.491982 AGCCTGTATCTAGTTGAAACCTTG 58.508 41.667 0.00 0.00 0.00 3.61
1490 1582 4.688879 TGTATCTAGTTGAAACCTTGTGCG 59.311 41.667 0.00 0.00 0.00 5.34
1494 1586 1.454847 TTGAAACCTTGTGCGCCCT 60.455 52.632 4.18 0.00 0.00 5.19
1520 1612 8.806429 TGATTCCTTTCAAATATGTCTTGCTA 57.194 30.769 0.00 0.00 0.00 3.49
1568 1662 0.100682 CTGCAATGTGATGCTCAGGC 59.899 55.000 0.67 0.00 46.54 4.85
1606 1700 7.372714 TCATGTAAATGCTTATTGATCCATGC 58.627 34.615 0.00 0.00 0.00 4.06
1676 1770 4.391830 GGTATCAATTCGTCTGCTGAAACA 59.608 41.667 0.00 0.00 0.00 2.83
1700 1794 3.243873 TGACAAGACCATCTCACTGTGAC 60.244 47.826 6.36 0.00 0.00 3.67
1724 1818 1.475403 TCAGCCAGGTACTACTGCTC 58.525 55.000 0.00 0.00 40.37 4.26
1733 1827 4.021894 CAGGTACTACTGCTCTGTTCAAGT 60.022 45.833 0.00 0.00 36.02 3.16
1737 1831 5.730296 ACTACTGCTCTGTTCAAGTGTAT 57.270 39.130 0.00 0.00 0.00 2.29
1745 1839 6.934083 TGCTCTGTTCAAGTGTATATGTTTCA 59.066 34.615 0.00 0.00 0.00 2.69
1771 1865 8.463930 TTTATCTCAACACATCCTCAAACTTT 57.536 30.769 0.00 0.00 0.00 2.66
1802 1896 7.492669 TCTTCTGATATTTTTCGTTAGCCAGAG 59.507 37.037 0.00 0.00 31.04 3.35
2048 2159 9.838339 ATAAACTAGATTCCTTTGACATACTGG 57.162 33.333 0.00 0.00 0.00 4.00
2059 2170 6.127897 CCTTTGACATACTGGACTCCATTTTC 60.128 42.308 0.00 0.00 30.82 2.29
2074 2185 8.149631 ACTCCATTTTCCATGGTTTCATTTAT 57.850 30.769 12.58 0.00 40.06 1.40
2203 2548 0.314302 AAGAGAACCGTGTGACCTCG 59.686 55.000 0.00 0.00 0.00 4.63
2425 2778 0.178861 TGAGGGGGAAGAAAGGAGCT 60.179 55.000 0.00 0.00 0.00 4.09
2635 2988 1.965219 CGTCTTCGGTCCTGTTCCT 59.035 57.895 0.00 0.00 0.00 3.36
2723 3076 6.268847 CCTTACCCTGCTTAGTCATATCTCTT 59.731 42.308 0.00 0.00 0.00 2.85
2726 3079 7.676683 ACCCTGCTTAGTCATATCTCTTTTA 57.323 36.000 0.00 0.00 0.00 1.52
2728 3081 8.718656 ACCCTGCTTAGTCATATCTCTTTTATT 58.281 33.333 0.00 0.00 0.00 1.40
2739 3092 9.565090 TCATATCTCTTTTATTTCCACATGGAG 57.435 33.333 0.00 0.00 46.36 3.86
2740 3093 6.705863 ATCTCTTTTATTTCCACATGGAGC 57.294 37.500 0.00 0.00 46.36 4.70
2760 3113 2.682856 GCGGAATTAACATTGCTCCAGA 59.317 45.455 0.00 0.00 0.00 3.86
2764 3117 5.991606 CGGAATTAACATTGCTCCAGAGATA 59.008 40.000 0.00 0.00 0.00 1.98
2783 3136 2.115734 ATTTTGGTTGCCCCTGCTGC 62.116 55.000 0.00 0.00 38.71 5.25
2825 3179 7.961351 TGGTAATTTGTGTTTGGAAGAATGAT 58.039 30.769 0.00 0.00 0.00 2.45
2826 3180 7.871973 TGGTAATTTGTGTTTGGAAGAATGATG 59.128 33.333 0.00 0.00 0.00 3.07
2884 3242 1.470098 CCCTCGGCAGATCAAGTTTTG 59.530 52.381 0.00 0.00 0.00 2.44
2908 3267 9.979578 TTGTAGCACATTTAATCTGAATGTTTT 57.020 25.926 0.09 0.00 43.23 2.43
2962 3321 4.333926 GCTCTGTTTTACCTGGATCATCAC 59.666 45.833 0.00 0.00 0.00 3.06
2964 3323 3.006940 TGTTTTACCTGGATCATCACGC 58.993 45.455 0.00 0.00 0.00 5.34
2986 3345 3.126858 CGCTGCCTGTAATTTTCTGCTTA 59.873 43.478 0.00 0.00 0.00 3.09
2991 3350 7.408756 TGCCTGTAATTTTCTGCTTATTGAT 57.591 32.000 0.00 0.00 0.00 2.57
3046 3405 1.209019 CCTGGAACATGAGGAGGACAG 59.791 57.143 0.00 0.00 38.20 3.51
3089 3448 0.169672 CATTTGCTCCCTGCTTCACG 59.830 55.000 0.00 0.00 43.37 4.35
3098 3457 4.390297 GCTCCCTGCTTCACGATATATTTC 59.610 45.833 0.00 0.00 38.95 2.17
3128 3487 8.870075 ATCCAATTTTAGCAGATATTAGGTCC 57.130 34.615 0.00 0.00 0.00 4.46
3155 3514 1.404035 GTCACCTTTTTCAGCCGTTGT 59.596 47.619 0.00 0.00 0.00 3.32
3169 3528 1.497991 CGTTGTGTCATTCGGTGTCT 58.502 50.000 0.00 0.00 0.00 3.41
3170 3529 2.608506 CCGTTGTGTCATTCGGTGTCTA 60.609 50.000 0.00 0.00 38.45 2.59
3183 3542 2.361119 CGGTGTCTATCATCTTTCCCGA 59.639 50.000 0.00 0.00 32.40 5.14
3201 3560 3.001330 CCCGATGAACTAAAATGTCGAGC 59.999 47.826 0.00 0.00 0.00 5.03
3216 3575 0.524816 CGAGCAATTGATGTGCAGCC 60.525 55.000 10.34 0.00 44.74 4.85
3255 3614 7.016153 ACTGTATCATCTTTAACCTTGGACA 57.984 36.000 0.00 0.00 0.00 4.02
3305 3673 0.179048 TGAGGGTGAATATGCTGCCG 60.179 55.000 0.00 0.00 0.00 5.69
3314 3682 1.637338 ATATGCTGCCGGAGATCTGA 58.363 50.000 5.05 0.00 0.00 3.27
3345 3717 2.443255 ACATGGGTGATCCTATCCAACC 59.557 50.000 0.00 0.00 40.49 3.77
3347 3719 2.126882 TGGGTGATCCTATCCAACCTG 58.873 52.381 0.00 0.00 40.71 4.00
3422 3795 0.926155 CATCGACCAACTCATGAGCG 59.074 55.000 22.83 16.71 0.00 5.03
3435 3808 2.141517 CATGAGCGGCTTAAGGAGATG 58.858 52.381 2.97 0.00 0.00 2.90
3445 3818 5.675538 GGCTTAAGGAGATGATAGTGTGTT 58.324 41.667 4.29 0.00 0.00 3.32
3460 3833 3.632145 AGTGTGTTCATTTGGAGTTGGAC 59.368 43.478 0.00 0.00 0.00 4.02
3464 3837 4.819630 GTGTTCATTTGGAGTTGGACTGTA 59.180 41.667 0.00 0.00 0.00 2.74
3490 3863 9.787532 ATTTGTCCAAATACATTACAATTCGAG 57.212 29.630 3.49 0.00 39.08 4.04
3491 3864 7.315247 TGTCCAAATACATTACAATTCGAGG 57.685 36.000 0.00 0.00 0.00 4.63
3492 3865 7.106890 TGTCCAAATACATTACAATTCGAGGA 58.893 34.615 0.00 0.00 0.00 3.71
3510 3908 7.548196 TCGAGGAATTGTAATGTATTTGGAC 57.452 36.000 0.00 0.00 0.00 4.02
3516 3914 8.921670 GGAATTGTAATGTATTTGGACAAACAC 58.078 33.333 0.00 0.00 33.99 3.32
3553 3951 3.181493 ACTCAATCAGATGCCGAATTTGC 60.181 43.478 0.00 0.00 0.00 3.68
3554 3952 3.018856 TCAATCAGATGCCGAATTTGCT 58.981 40.909 3.06 0.00 0.00 3.91
3556 3954 1.097232 TCAGATGCCGAATTTGCTGG 58.903 50.000 0.00 0.00 0.00 4.85
3557 3955 0.813184 CAGATGCCGAATTTGCTGGT 59.187 50.000 3.06 0.00 0.00 4.00
3560 3958 0.611618 ATGCCGAATTTGCTGGTGGA 60.612 50.000 3.06 0.00 0.00 4.02
3581 3979 2.375174 AGTTGGAGATGCCCTAACACAA 59.625 45.455 0.00 0.00 34.97 3.33
3598 3996 8.950210 CCTAACACAATTCATAGTGAATCTGTT 58.050 33.333 20.64 20.64 45.57 3.16
3618 4026 4.155826 TGTTTGTCTTCACAGTTGAACCAG 59.844 41.667 0.00 0.00 36.79 4.00
3623 4031 1.295792 TCACAGTTGAACCAGCGAAC 58.704 50.000 0.00 0.00 0.00 3.95
3663 4071 2.504244 GAGACGCTCACCGGTTCG 60.504 66.667 2.97 11.99 42.52 3.95
3681 4089 2.363147 GTCAGGTCCGCTCCTCCT 60.363 66.667 0.00 0.00 35.37 3.69
3686 4094 1.684734 GGTCCGCTCCTCCTAACCA 60.685 63.158 0.00 0.00 0.00 3.67
3688 4096 2.050350 TCCGCTCCTCCTAACCACG 61.050 63.158 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.999950 GGAAGCTGAGAAATGAGAACTGAA 59.000 41.667 0.00 0.00 0.00 3.02
1 2 4.285517 AGGAAGCTGAGAAATGAGAACTGA 59.714 41.667 0.00 0.00 0.00 3.41
2 3 4.392445 CAGGAAGCTGAGAAATGAGAACTG 59.608 45.833 0.00 0.00 0.00 3.16
3 4 4.285517 TCAGGAAGCTGAGAAATGAGAACT 59.714 41.667 0.00 0.00 0.00 3.01
4 5 4.573900 TCAGGAAGCTGAGAAATGAGAAC 58.426 43.478 0.00 0.00 0.00 3.01
5 6 4.897509 TCAGGAAGCTGAGAAATGAGAA 57.102 40.909 0.00 0.00 0.00 2.87
6 7 4.573900 GTTCAGGAAGCTGAGAAATGAGA 58.426 43.478 0.00 0.00 34.56 3.27
7 8 3.370366 CGTTCAGGAAGCTGAGAAATGAG 59.630 47.826 0.00 0.00 34.56 2.90
8 9 3.329386 CGTTCAGGAAGCTGAGAAATGA 58.671 45.455 0.00 0.00 34.56 2.57
9 10 2.417933 CCGTTCAGGAAGCTGAGAAATG 59.582 50.000 0.00 0.00 45.00 2.32
10 11 2.704572 CCGTTCAGGAAGCTGAGAAAT 58.295 47.619 0.00 0.00 45.00 2.17
11 12 1.878102 GCCGTTCAGGAAGCTGAGAAA 60.878 52.381 0.00 0.00 45.00 2.52
12 13 0.320771 GCCGTTCAGGAAGCTGAGAA 60.321 55.000 0.00 0.00 45.00 2.87
13 14 1.188219 AGCCGTTCAGGAAGCTGAGA 61.188 55.000 0.00 0.00 45.00 3.27
14 15 1.294780 AGCCGTTCAGGAAGCTGAG 59.705 57.895 0.00 0.00 45.00 3.35
15 16 3.471620 AGCCGTTCAGGAAGCTGA 58.528 55.556 0.00 0.00 45.00 4.26
16 17 3.571119 CAGCCGTTCAGGAAGCTG 58.429 61.111 8.33 8.33 45.92 4.24
17 18 2.359230 GCAGCCGTTCAGGAAGCT 60.359 61.111 0.00 0.00 45.00 3.74
18 19 2.669569 TGCAGCCGTTCAGGAAGC 60.670 61.111 0.00 0.00 45.00 3.86
19 20 0.886490 AAGTGCAGCCGTTCAGGAAG 60.886 55.000 0.00 0.00 45.00 3.46
20 21 1.148273 AAGTGCAGCCGTTCAGGAA 59.852 52.632 0.00 0.00 45.00 3.36
21 22 1.597854 CAAGTGCAGCCGTTCAGGA 60.598 57.895 0.00 0.00 45.00 3.86
22 23 1.845809 GACAAGTGCAGCCGTTCAGG 61.846 60.000 0.00 0.00 44.97 3.86
23 24 0.882042 AGACAAGTGCAGCCGTTCAG 60.882 55.000 0.00 0.00 0.00 3.02
24 25 0.463654 AAGACAAGTGCAGCCGTTCA 60.464 50.000 0.00 0.00 0.00 3.18
25 26 0.663153 AAAGACAAGTGCAGCCGTTC 59.337 50.000 0.00 0.00 0.00 3.95
26 27 0.663153 GAAAGACAAGTGCAGCCGTT 59.337 50.000 0.00 0.00 0.00 4.44
27 28 0.179045 AGAAAGACAAGTGCAGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
28 29 0.236711 CAGAAAGACAAGTGCAGCCG 59.763 55.000 0.00 0.00 0.00 5.52
29 30 1.265365 GACAGAAAGACAAGTGCAGCC 59.735 52.381 0.00 0.00 0.00 4.85
30 31 1.942657 TGACAGAAAGACAAGTGCAGC 59.057 47.619 0.00 0.00 0.00 5.25
31 32 5.929697 TTATGACAGAAAGACAAGTGCAG 57.070 39.130 0.00 0.00 0.00 4.41
32 33 5.997129 TGATTATGACAGAAAGACAAGTGCA 59.003 36.000 0.00 0.00 0.00 4.57
33 34 6.148480 ACTGATTATGACAGAAAGACAAGTGC 59.852 38.462 0.00 0.00 38.55 4.40
34 35 7.664082 ACTGATTATGACAGAAAGACAAGTG 57.336 36.000 0.00 0.00 38.55 3.16
35 36 8.682936 AAACTGATTATGACAGAAAGACAAGT 57.317 30.769 0.00 0.00 38.55 3.16
36 37 9.956720 AAAAACTGATTATGACAGAAAGACAAG 57.043 29.630 0.00 0.00 38.55 3.16
37 38 9.734620 CAAAAACTGATTATGACAGAAAGACAA 57.265 29.630 0.00 0.00 38.55 3.18
38 39 7.862372 GCAAAAACTGATTATGACAGAAAGACA 59.138 33.333 0.00 0.00 38.55 3.41
39 40 7.862372 TGCAAAAACTGATTATGACAGAAAGAC 59.138 33.333 0.00 0.00 38.55 3.01
40 41 7.939782 TGCAAAAACTGATTATGACAGAAAGA 58.060 30.769 0.00 0.00 38.55 2.52
41 42 8.752766 ATGCAAAAACTGATTATGACAGAAAG 57.247 30.769 0.00 0.00 38.55 2.62
42 43 8.980610 CAATGCAAAAACTGATTATGACAGAAA 58.019 29.630 0.00 0.00 38.55 2.52
43 44 8.143193 ACAATGCAAAAACTGATTATGACAGAA 58.857 29.630 0.00 0.00 38.55 3.02
44 45 7.660112 ACAATGCAAAAACTGATTATGACAGA 58.340 30.769 0.00 0.00 38.55 3.41
45 46 7.878477 ACAATGCAAAAACTGATTATGACAG 57.122 32.000 0.00 0.00 40.68 3.51
46 47 7.710044 ACAACAATGCAAAAACTGATTATGACA 59.290 29.630 0.00 0.00 0.00 3.58
47 48 8.075593 ACAACAATGCAAAAACTGATTATGAC 57.924 30.769 0.00 0.00 0.00 3.06
48 49 9.755804 TTACAACAATGCAAAAACTGATTATGA 57.244 25.926 0.00 0.00 0.00 2.15
50 51 9.762933 ACTTACAACAATGCAAAAACTGATTAT 57.237 25.926 0.00 0.00 0.00 1.28
51 52 9.593134 AACTTACAACAATGCAAAAACTGATTA 57.407 25.926 0.00 0.00 0.00 1.75
52 53 8.491331 AACTTACAACAATGCAAAAACTGATT 57.509 26.923 0.00 0.00 0.00 2.57
53 54 8.389603 CAAACTTACAACAATGCAAAAACTGAT 58.610 29.630 0.00 0.00 0.00 2.90
54 55 7.386299 ACAAACTTACAACAATGCAAAAACTGA 59.614 29.630 0.00 0.00 0.00 3.41
55 56 7.478044 CACAAACTTACAACAATGCAAAAACTG 59.522 33.333 0.00 0.00 0.00 3.16
56 57 7.386299 TCACAAACTTACAACAATGCAAAAACT 59.614 29.630 0.00 0.00 0.00 2.66
57 58 7.477112 GTCACAAACTTACAACAATGCAAAAAC 59.523 33.333 0.00 0.00 0.00 2.43
58 59 7.386299 AGTCACAAACTTACAACAATGCAAAAA 59.614 29.630 0.00 0.00 33.03 1.94
59 60 6.870965 AGTCACAAACTTACAACAATGCAAAA 59.129 30.769 0.00 0.00 33.03 2.44
60 61 6.309980 CAGTCACAAACTTACAACAATGCAAA 59.690 34.615 0.00 0.00 35.45 3.68
61 62 5.804473 CAGTCACAAACTTACAACAATGCAA 59.196 36.000 0.00 0.00 35.45 4.08
62 63 5.105957 ACAGTCACAAACTTACAACAATGCA 60.106 36.000 0.00 0.00 35.45 3.96
63 64 5.339990 ACAGTCACAAACTTACAACAATGC 58.660 37.500 0.00 0.00 35.45 3.56
64 65 7.810766 AAACAGTCACAAACTTACAACAATG 57.189 32.000 0.00 0.00 35.45 2.82
66 67 9.991388 GTATAAACAGTCACAAACTTACAACAA 57.009 29.630 0.00 0.00 35.45 2.83
67 68 8.614346 GGTATAAACAGTCACAAACTTACAACA 58.386 33.333 0.00 0.00 35.45 3.33
68 69 8.071967 GGGTATAAACAGTCACAAACTTACAAC 58.928 37.037 0.00 0.00 35.45 3.32
69 70 7.774157 TGGGTATAAACAGTCACAAACTTACAA 59.226 33.333 0.00 0.00 35.45 2.41
70 71 7.281098 TGGGTATAAACAGTCACAAACTTACA 58.719 34.615 0.00 0.00 35.45 2.41
71 72 7.733402 TGGGTATAAACAGTCACAAACTTAC 57.267 36.000 0.00 0.00 35.45 2.34
72 73 8.158132 TGATGGGTATAAACAGTCACAAACTTA 58.842 33.333 0.00 0.00 35.45 2.24
73 74 7.001674 TGATGGGTATAAACAGTCACAAACTT 58.998 34.615 0.00 0.00 35.45 2.66
74 75 6.539173 TGATGGGTATAAACAGTCACAAACT 58.461 36.000 0.00 0.00 39.44 2.66
75 76 6.653320 TCTGATGGGTATAAACAGTCACAAAC 59.347 38.462 0.00 0.00 0.00 2.93
76 77 6.774673 TCTGATGGGTATAAACAGTCACAAA 58.225 36.000 0.00 0.00 0.00 2.83
77 78 6.367374 TCTGATGGGTATAAACAGTCACAA 57.633 37.500 0.00 0.00 0.00 3.33
78 79 6.367374 TTCTGATGGGTATAAACAGTCACA 57.633 37.500 0.00 0.00 0.00 3.58
79 80 7.865706 ATTTCTGATGGGTATAAACAGTCAC 57.134 36.000 0.00 0.00 0.00 3.67
91 92 9.512588 GAACTGATGATAATATTTCTGATGGGT 57.487 33.333 0.00 0.00 0.00 4.51
92 93 8.954350 GGAACTGATGATAATATTTCTGATGGG 58.046 37.037 0.00 0.00 0.00 4.00
93 94 9.736414 AGGAACTGATGATAATATTTCTGATGG 57.264 33.333 0.00 0.00 37.18 3.51
113 114 6.363065 AGTATTTGCATCATCATCAGGAACT 58.637 36.000 0.00 0.00 43.88 3.01
114 115 6.630444 AGTATTTGCATCATCATCAGGAAC 57.370 37.500 0.00 0.00 0.00 3.62
142 143 9.474920 CCTTTGTTGCTTTCTTTATGTGATTAA 57.525 29.630 0.00 0.00 0.00 1.40
143 144 8.855110 TCCTTTGTTGCTTTCTTTATGTGATTA 58.145 29.630 0.00 0.00 0.00 1.75
144 145 7.725251 TCCTTTGTTGCTTTCTTTATGTGATT 58.275 30.769 0.00 0.00 0.00 2.57
145 146 7.231317 TCTCCTTTGTTGCTTTCTTTATGTGAT 59.769 33.333 0.00 0.00 0.00 3.06
146 147 6.545666 TCTCCTTTGTTGCTTTCTTTATGTGA 59.454 34.615 0.00 0.00 0.00 3.58
147 148 6.638468 GTCTCCTTTGTTGCTTTCTTTATGTG 59.362 38.462 0.00 0.00 0.00 3.21
148 149 6.321181 TGTCTCCTTTGTTGCTTTCTTTATGT 59.679 34.615 0.00 0.00 0.00 2.29
149 150 6.738114 TGTCTCCTTTGTTGCTTTCTTTATG 58.262 36.000 0.00 0.00 0.00 1.90
150 151 6.959639 TGTCTCCTTTGTTGCTTTCTTTAT 57.040 33.333 0.00 0.00 0.00 1.40
151 152 6.183360 CCTTGTCTCCTTTGTTGCTTTCTTTA 60.183 38.462 0.00 0.00 0.00 1.85
152 153 5.394553 CCTTGTCTCCTTTGTTGCTTTCTTT 60.395 40.000 0.00 0.00 0.00 2.52
153 154 4.098501 CCTTGTCTCCTTTGTTGCTTTCTT 59.901 41.667 0.00 0.00 0.00 2.52
154 155 3.633986 CCTTGTCTCCTTTGTTGCTTTCT 59.366 43.478 0.00 0.00 0.00 2.52
155 156 3.243535 CCCTTGTCTCCTTTGTTGCTTTC 60.244 47.826 0.00 0.00 0.00 2.62
156 157 2.695147 CCCTTGTCTCCTTTGTTGCTTT 59.305 45.455 0.00 0.00 0.00 3.51
157 158 2.310538 CCCTTGTCTCCTTTGTTGCTT 58.689 47.619 0.00 0.00 0.00 3.91
158 159 1.986882 CCCTTGTCTCCTTTGTTGCT 58.013 50.000 0.00 0.00 0.00 3.91
159 160 0.315251 GCCCTTGTCTCCTTTGTTGC 59.685 55.000 0.00 0.00 0.00 4.17
160 161 0.961753 GGCCCTTGTCTCCTTTGTTG 59.038 55.000 0.00 0.00 0.00 3.33
161 162 0.555769 TGGCCCTTGTCTCCTTTGTT 59.444 50.000 0.00 0.00 0.00 2.83
162 163 0.555769 TTGGCCCTTGTCTCCTTTGT 59.444 50.000 0.00 0.00 0.00 2.83
163 164 0.961753 GTTGGCCCTTGTCTCCTTTG 59.038 55.000 0.00 0.00 0.00 2.77
164 165 0.853530 AGTTGGCCCTTGTCTCCTTT 59.146 50.000 0.00 0.00 0.00 3.11
165 166 0.111253 CAGTTGGCCCTTGTCTCCTT 59.889 55.000 0.00 0.00 0.00 3.36
166 167 1.763770 CAGTTGGCCCTTGTCTCCT 59.236 57.895 0.00 0.00 0.00 3.69
167 168 1.303643 CCAGTTGGCCCTTGTCTCC 60.304 63.158 0.00 0.00 0.00 3.71
168 169 1.303643 CCCAGTTGGCCCTTGTCTC 60.304 63.158 0.00 0.00 0.00 3.36
169 170 1.774217 TCCCAGTTGGCCCTTGTCT 60.774 57.895 0.00 0.00 0.00 3.41
170 171 1.603739 GTCCCAGTTGGCCCTTGTC 60.604 63.158 0.00 0.00 0.00 3.18
171 172 2.520968 GTCCCAGTTGGCCCTTGT 59.479 61.111 0.00 0.00 0.00 3.16
172 173 2.672996 CGTCCCAGTTGGCCCTTG 60.673 66.667 0.00 0.00 0.00 3.61
173 174 2.002018 TTTCGTCCCAGTTGGCCCTT 62.002 55.000 0.00 0.00 0.00 3.95
174 175 2.002018 TTTTCGTCCCAGTTGGCCCT 62.002 55.000 0.00 0.00 0.00 5.19
175 176 0.898326 ATTTTCGTCCCAGTTGGCCC 60.898 55.000 0.00 0.00 0.00 5.80
176 177 0.526211 GATTTTCGTCCCAGTTGGCC 59.474 55.000 0.00 0.00 0.00 5.36
177 178 0.526211 GGATTTTCGTCCCAGTTGGC 59.474 55.000 0.00 0.00 31.82 4.52
178 179 1.904287 TGGATTTTCGTCCCAGTTGG 58.096 50.000 0.00 0.00 37.48 3.77
179 180 3.347216 AGATGGATTTTCGTCCCAGTTG 58.653 45.455 0.00 0.00 37.48 3.16
180 181 3.264450 AGAGATGGATTTTCGTCCCAGTT 59.736 43.478 0.00 0.00 37.48 3.16
181 182 2.840651 AGAGATGGATTTTCGTCCCAGT 59.159 45.455 0.00 0.00 37.48 4.00
182 183 3.201290 CAGAGATGGATTTTCGTCCCAG 58.799 50.000 0.00 0.00 37.48 4.45
183 184 2.680805 GCAGAGATGGATTTTCGTCCCA 60.681 50.000 0.00 0.00 37.48 4.37
184 185 1.943340 GCAGAGATGGATTTTCGTCCC 59.057 52.381 0.00 0.00 37.48 4.46
185 186 2.611292 CTGCAGAGATGGATTTTCGTCC 59.389 50.000 8.42 0.00 38.81 4.79
186 187 2.031437 GCTGCAGAGATGGATTTTCGTC 59.969 50.000 20.43 0.00 0.00 4.20
187 188 2.012673 GCTGCAGAGATGGATTTTCGT 58.987 47.619 20.43 0.00 0.00 3.85
188 189 1.332997 GGCTGCAGAGATGGATTTTCG 59.667 52.381 20.43 0.00 0.00 3.46
189 190 1.332997 CGGCTGCAGAGATGGATTTTC 59.667 52.381 20.43 0.00 0.00 2.29
190 191 1.386533 CGGCTGCAGAGATGGATTTT 58.613 50.000 20.43 0.00 0.00 1.82
191 192 1.099879 GCGGCTGCAGAGATGGATTT 61.100 55.000 20.43 0.00 42.15 2.17
192 193 1.525535 GCGGCTGCAGAGATGGATT 60.526 57.895 20.43 0.00 42.15 3.01
193 194 2.110627 GCGGCTGCAGAGATGGAT 59.889 61.111 20.43 0.00 42.15 3.41
194 195 4.519437 CGCGGCTGCAGAGATGGA 62.519 66.667 20.43 0.00 42.97 3.41
197 198 4.887987 GAGCGCGGCTGCAGAGAT 62.888 66.667 20.43 3.38 39.88 2.75
204 205 3.235292 TTTTTCGTGAGCGCGGCTG 62.235 57.895 8.83 0.00 39.88 4.85
205 206 2.970324 TTTTTCGTGAGCGCGGCT 60.970 55.556 8.83 5.31 43.88 5.52
256 257 7.082700 ACGCACAAAAAGAAATTGGATTTTT 57.917 28.000 3.63 3.63 36.76 1.94
257 258 6.676237 ACGCACAAAAAGAAATTGGATTTT 57.324 29.167 0.00 0.00 31.47 1.82
258 259 6.676237 AACGCACAAAAAGAAATTGGATTT 57.324 29.167 0.00 0.00 34.64 2.17
259 260 6.758886 TGTAACGCACAAAAAGAAATTGGATT 59.241 30.769 0.00 0.00 32.95 3.01
260 261 6.276847 TGTAACGCACAAAAAGAAATTGGAT 58.723 32.000 0.00 0.00 32.95 3.41
261 262 5.651530 TGTAACGCACAAAAAGAAATTGGA 58.348 33.333 0.00 0.00 32.95 3.53
262 263 5.957910 TGTAACGCACAAAAAGAAATTGG 57.042 34.783 0.00 0.00 32.95 3.16
273 274 4.805719 TGCATCAAATTTTGTAACGCACAA 59.194 33.333 8.89 0.00 45.49 3.33
274 275 4.363138 TGCATCAAATTTTGTAACGCACA 58.637 34.783 8.89 0.00 34.51 4.57
275 276 4.963237 TGCATCAAATTTTGTAACGCAC 57.037 36.364 8.89 0.00 0.00 5.34
276 277 5.225642 TCATGCATCAAATTTTGTAACGCA 58.774 33.333 8.89 12.45 0.00 5.24
277 278 5.220265 CCTCATGCATCAAATTTTGTAACGC 60.220 40.000 8.89 8.02 0.00 4.84
278 279 5.863397 ACCTCATGCATCAAATTTTGTAACG 59.137 36.000 8.89 0.00 0.00 3.18
279 280 7.384660 TGAACCTCATGCATCAAATTTTGTAAC 59.615 33.333 8.89 1.15 0.00 2.50
280 281 7.384660 GTGAACCTCATGCATCAAATTTTGTAA 59.615 33.333 8.89 0.00 0.00 2.41
281 282 6.867816 GTGAACCTCATGCATCAAATTTTGTA 59.132 34.615 8.89 0.00 0.00 2.41
282 283 5.697633 GTGAACCTCATGCATCAAATTTTGT 59.302 36.000 8.89 0.00 0.00 2.83
283 284 5.929992 AGTGAACCTCATGCATCAAATTTTG 59.070 36.000 0.00 2.59 0.00 2.44
284 285 6.105397 AGTGAACCTCATGCATCAAATTTT 57.895 33.333 0.00 0.00 0.00 1.82
285 286 5.337009 GGAGTGAACCTCATGCATCAAATTT 60.337 40.000 0.00 0.00 42.40 1.82
286 287 4.159135 GGAGTGAACCTCATGCATCAAATT 59.841 41.667 0.00 0.00 42.40 1.82
287 288 3.698040 GGAGTGAACCTCATGCATCAAAT 59.302 43.478 0.00 0.00 42.40 2.32
288 289 3.084039 GGAGTGAACCTCATGCATCAAA 58.916 45.455 0.00 0.00 42.40 2.69
289 290 2.040145 TGGAGTGAACCTCATGCATCAA 59.960 45.455 0.00 0.00 42.40 2.57
290 291 1.629861 TGGAGTGAACCTCATGCATCA 59.370 47.619 0.00 0.00 42.40 3.07
291 292 2.408271 TGGAGTGAACCTCATGCATC 57.592 50.000 0.00 0.00 42.40 3.91
292 293 2.885135 TTGGAGTGAACCTCATGCAT 57.115 45.000 0.00 0.00 42.40 3.96
293 294 2.885135 ATTGGAGTGAACCTCATGCA 57.115 45.000 0.00 0.00 42.40 3.96
294 295 4.022068 TGAAAATTGGAGTGAACCTCATGC 60.022 41.667 0.00 0.00 42.40 4.06
295 296 5.710513 TGAAAATTGGAGTGAACCTCATG 57.289 39.130 0.00 0.00 42.40 3.07
296 297 6.729690 TTTGAAAATTGGAGTGAACCTCAT 57.270 33.333 0.00 0.00 42.40 2.90
297 298 6.323482 TGATTTGAAAATTGGAGTGAACCTCA 59.677 34.615 0.00 0.00 42.40 3.86
298 299 6.748132 TGATTTGAAAATTGGAGTGAACCTC 58.252 36.000 0.00 0.00 39.67 3.85
299 300 6.729690 TGATTTGAAAATTGGAGTGAACCT 57.270 33.333 0.00 0.00 0.00 3.50
300 301 8.087750 TGTATGATTTGAAAATTGGAGTGAACC 58.912 33.333 0.00 0.00 0.00 3.62
301 302 9.643693 ATGTATGATTTGAAAATTGGAGTGAAC 57.356 29.630 0.00 0.00 0.00 3.18
302 303 9.859427 GATGTATGATTTGAAAATTGGAGTGAA 57.141 29.630 0.00 0.00 0.00 3.18
303 304 9.246670 AGATGTATGATTTGAAAATTGGAGTGA 57.753 29.630 0.00 0.00 0.00 3.41
304 305 9.297586 CAGATGTATGATTTGAAAATTGGAGTG 57.702 33.333 0.00 0.00 0.00 3.51
305 306 9.246670 TCAGATGTATGATTTGAAAATTGGAGT 57.753 29.630 0.00 0.00 0.00 3.85
307 308 9.859427 GTTCAGATGTATGATTTGAAAATTGGA 57.141 29.630 0.00 0.00 30.43 3.53
308 309 9.642327 TGTTCAGATGTATGATTTGAAAATTGG 57.358 29.630 0.00 0.00 30.43 3.16
310 311 9.362539 GCTGTTCAGATGTATGATTTGAAAATT 57.637 29.630 3.84 0.00 30.43 1.82
311 312 8.746530 AGCTGTTCAGATGTATGATTTGAAAAT 58.253 29.630 3.84 0.00 30.43 1.82
312 313 8.114331 AGCTGTTCAGATGTATGATTTGAAAA 57.886 30.769 3.84 0.00 30.43 2.29
313 314 7.609146 AGAGCTGTTCAGATGTATGATTTGAAA 59.391 33.333 0.00 0.00 30.43 2.69
314 315 7.108194 AGAGCTGTTCAGATGTATGATTTGAA 58.892 34.615 0.00 0.00 0.00 2.69
315 316 6.647229 AGAGCTGTTCAGATGTATGATTTGA 58.353 36.000 0.00 0.00 0.00 2.69
316 317 6.292221 CGAGAGCTGTTCAGATGTATGATTTG 60.292 42.308 0.00 0.00 0.00 2.32
317 318 5.752472 CGAGAGCTGTTCAGATGTATGATTT 59.248 40.000 0.00 0.00 0.00 2.17
318 319 5.288015 CGAGAGCTGTTCAGATGTATGATT 58.712 41.667 0.00 0.00 0.00 2.57
319 320 4.261952 CCGAGAGCTGTTCAGATGTATGAT 60.262 45.833 0.00 0.00 0.00 2.45
320 321 3.067320 CCGAGAGCTGTTCAGATGTATGA 59.933 47.826 0.00 0.00 0.00 2.15
321 322 3.379240 CCGAGAGCTGTTCAGATGTATG 58.621 50.000 0.00 0.00 0.00 2.39
322 323 2.223923 GCCGAGAGCTGTTCAGATGTAT 60.224 50.000 0.00 0.00 38.99 2.29
323 324 1.135139 GCCGAGAGCTGTTCAGATGTA 59.865 52.381 0.00 0.00 38.99 2.29
324 325 0.108424 GCCGAGAGCTGTTCAGATGT 60.108 55.000 0.00 0.00 38.99 3.06
325 326 0.108472 TGCCGAGAGCTGTTCAGATG 60.108 55.000 0.00 0.00 44.23 2.90
326 327 0.610174 TTGCCGAGAGCTGTTCAGAT 59.390 50.000 0.00 0.00 44.23 2.90
327 328 0.392706 TTTGCCGAGAGCTGTTCAGA 59.607 50.000 0.00 0.00 44.23 3.27
328 329 1.229428 TTTTGCCGAGAGCTGTTCAG 58.771 50.000 0.00 0.00 44.23 3.02
329 330 1.674359 TTTTTGCCGAGAGCTGTTCA 58.326 45.000 0.00 0.00 44.23 3.18
345 346 3.181455 GCAGACCCCCAATTTGTCTTTTT 60.181 43.478 0.00 0.00 37.25 1.94
346 347 2.368548 GCAGACCCCCAATTTGTCTTTT 59.631 45.455 0.00 0.00 37.25 2.27
347 348 1.970640 GCAGACCCCCAATTTGTCTTT 59.029 47.619 0.00 0.00 37.25 2.52
348 349 1.133199 TGCAGACCCCCAATTTGTCTT 60.133 47.619 0.00 0.00 37.25 3.01
349 350 0.482446 TGCAGACCCCCAATTTGTCT 59.518 50.000 0.00 0.00 39.86 3.41
350 351 1.337118 TTGCAGACCCCCAATTTGTC 58.663 50.000 0.00 0.00 0.00 3.18
351 352 1.799933 TTTGCAGACCCCCAATTTGT 58.200 45.000 0.00 0.00 0.00 2.83
352 353 2.926778 TTTTGCAGACCCCCAATTTG 57.073 45.000 0.00 0.00 0.00 2.32
369 370 9.086336 CATCAGTACATGAACAACAAACTTTTT 57.914 29.630 0.00 0.00 42.53 1.94
370 371 8.250332 ACATCAGTACATGAACAACAAACTTTT 58.750 29.630 0.00 0.00 42.53 2.27
371 372 7.771183 ACATCAGTACATGAACAACAAACTTT 58.229 30.769 0.00 0.00 42.53 2.66
372 373 7.333528 ACATCAGTACATGAACAACAAACTT 57.666 32.000 0.00 0.00 42.53 2.66
373 374 6.017109 GGACATCAGTACATGAACAACAAACT 60.017 38.462 0.00 0.00 42.53 2.66
374 375 6.142817 GGACATCAGTACATGAACAACAAAC 58.857 40.000 0.00 0.00 42.53 2.93
375 376 5.825151 TGGACATCAGTACATGAACAACAAA 59.175 36.000 0.00 0.00 42.53 2.83
376 377 5.372373 TGGACATCAGTACATGAACAACAA 58.628 37.500 0.00 0.00 42.53 2.83
377 378 4.967036 TGGACATCAGTACATGAACAACA 58.033 39.130 0.00 0.00 42.53 3.33
378 379 5.940192 TTGGACATCAGTACATGAACAAC 57.060 39.130 0.00 0.00 42.53 3.32
379 380 6.714356 TCATTTGGACATCAGTACATGAACAA 59.286 34.615 0.00 0.32 42.53 2.83
380 381 6.237154 TCATTTGGACATCAGTACATGAACA 58.763 36.000 0.00 0.00 42.53 3.18
381 382 6.741992 TCATTTGGACATCAGTACATGAAC 57.258 37.500 0.00 0.00 42.53 3.18
382 383 7.943079 AATCATTTGGACATCAGTACATGAA 57.057 32.000 0.00 0.00 42.53 2.57
383 384 7.611079 TCAAATCATTTGGACATCAGTACATGA 59.389 33.333 10.30 0.00 38.69 3.07
384 385 7.764331 TCAAATCATTTGGACATCAGTACATG 58.236 34.615 10.30 0.00 38.69 3.21
385 386 7.943079 TCAAATCATTTGGACATCAGTACAT 57.057 32.000 10.30 0.00 38.69 2.29
386 387 7.757941 TTCAAATCATTTGGACATCAGTACA 57.242 32.000 10.30 0.00 40.98 2.90
387 388 9.079833 CATTTCAAATCATTTGGACATCAGTAC 57.920 33.333 10.30 0.00 40.98 2.73
388 389 8.252417 CCATTTCAAATCATTTGGACATCAGTA 58.748 33.333 10.30 0.00 40.98 2.74
389 390 7.038870 TCCATTTCAAATCATTTGGACATCAGT 60.039 33.333 10.30 0.00 40.98 3.41
390 391 7.324935 TCCATTTCAAATCATTTGGACATCAG 58.675 34.615 10.30 0.00 40.98 2.90
391 392 7.242322 TCCATTTCAAATCATTTGGACATCA 57.758 32.000 10.30 0.00 40.98 3.07
392 393 6.257193 GCTCCATTTCAAATCATTTGGACATC 59.743 38.462 10.30 0.00 40.98 3.06
393 394 6.110707 GCTCCATTTCAAATCATTTGGACAT 58.889 36.000 10.30 0.00 40.98 3.06
394 395 5.481105 GCTCCATTTCAAATCATTTGGACA 58.519 37.500 10.30 0.00 40.98 4.02
395 396 4.563976 CGCTCCATTTCAAATCATTTGGAC 59.436 41.667 10.30 0.00 40.98 4.02
396 397 4.381825 CCGCTCCATTTCAAATCATTTGGA 60.382 41.667 10.30 0.00 40.98 3.53
397 398 3.866910 CCGCTCCATTTCAAATCATTTGG 59.133 43.478 10.30 0.00 40.98 3.28
398 399 3.866910 CCCGCTCCATTTCAAATCATTTG 59.133 43.478 3.46 3.46 41.96 2.32
399 400 3.679639 GCCCGCTCCATTTCAAATCATTT 60.680 43.478 0.00 0.00 0.00 2.32
400 401 2.159057 GCCCGCTCCATTTCAAATCATT 60.159 45.455 0.00 0.00 0.00 2.57
401 402 1.410153 GCCCGCTCCATTTCAAATCAT 59.590 47.619 0.00 0.00 0.00 2.45
402 403 0.817013 GCCCGCTCCATTTCAAATCA 59.183 50.000 0.00 0.00 0.00 2.57
403 404 0.103026 GGCCCGCTCCATTTCAAATC 59.897 55.000 0.00 0.00 0.00 2.17
404 405 0.324645 AGGCCCGCTCCATTTCAAAT 60.325 50.000 0.00 0.00 0.00 2.32
405 406 0.965363 GAGGCCCGCTCCATTTCAAA 60.965 55.000 0.00 0.00 0.00 2.69
406 407 1.378514 GAGGCCCGCTCCATTTCAA 60.379 57.895 0.00 0.00 0.00 2.69
407 408 2.272146 GAGGCCCGCTCCATTTCA 59.728 61.111 0.00 0.00 0.00 2.69
408 409 2.115291 GTGAGGCCCGCTCCATTTC 61.115 63.158 0.00 0.00 0.00 2.17
409 410 2.044946 GTGAGGCCCGCTCCATTT 60.045 61.111 0.00 0.00 0.00 2.32
410 411 4.473520 CGTGAGGCCCGCTCCATT 62.474 66.667 0.00 0.00 0.00 3.16
417 418 2.745884 TTTGATGCGTGAGGCCCG 60.746 61.111 0.00 0.00 42.61 6.13
418 419 1.244019 AACTTTGATGCGTGAGGCCC 61.244 55.000 0.00 0.00 42.61 5.80
419 420 0.598065 AAACTTTGATGCGTGAGGCC 59.402 50.000 0.00 0.00 42.61 5.19
420 421 1.537202 AGAAACTTTGATGCGTGAGGC 59.463 47.619 0.00 0.00 43.96 4.70
421 422 3.125316 GGTAGAAACTTTGATGCGTGAGG 59.875 47.826 0.00 0.00 0.00 3.86
422 423 3.181530 CGGTAGAAACTTTGATGCGTGAG 60.182 47.826 0.00 0.00 0.00 3.51
423 424 2.734606 CGGTAGAAACTTTGATGCGTGA 59.265 45.455 0.00 0.00 0.00 4.35
424 425 2.724839 GCGGTAGAAACTTTGATGCGTG 60.725 50.000 0.00 0.00 0.00 5.34
425 426 1.463444 GCGGTAGAAACTTTGATGCGT 59.537 47.619 0.00 0.00 0.00 5.24
426 427 1.463056 TGCGGTAGAAACTTTGATGCG 59.537 47.619 0.00 0.00 0.00 4.73
427 428 2.225491 TGTGCGGTAGAAACTTTGATGC 59.775 45.455 0.00 0.00 0.00 3.91
428 429 4.481930 TTGTGCGGTAGAAACTTTGATG 57.518 40.909 0.00 0.00 0.00 3.07
429 430 5.508200 TTTTGTGCGGTAGAAACTTTGAT 57.492 34.783 0.00 0.00 0.00 2.57
430 431 4.966965 TTTTGTGCGGTAGAAACTTTGA 57.033 36.364 0.00 0.00 0.00 2.69
489 490 2.642154 TCTGCACCCGGTTAGAAAAA 57.358 45.000 0.00 0.00 0.00 1.94
490 491 2.039216 TCATCTGCACCCGGTTAGAAAA 59.961 45.455 0.00 0.00 0.00 2.29
491 492 1.626321 TCATCTGCACCCGGTTAGAAA 59.374 47.619 0.00 0.00 0.00 2.52
492 493 1.207089 CTCATCTGCACCCGGTTAGAA 59.793 52.381 0.00 0.00 0.00 2.10
493 494 0.824109 CTCATCTGCACCCGGTTAGA 59.176 55.000 0.00 4.22 0.00 2.10
494 495 0.811616 GCTCATCTGCACCCGGTTAG 60.812 60.000 0.00 0.00 0.00 2.34
495 496 1.220749 GCTCATCTGCACCCGGTTA 59.779 57.895 0.00 0.00 0.00 2.85
496 497 2.045926 GCTCATCTGCACCCGGTT 60.046 61.111 0.00 0.00 0.00 4.44
497 498 4.101448 GGCTCATCTGCACCCGGT 62.101 66.667 0.00 0.00 34.04 5.28
498 499 2.374830 CTAGGCTCATCTGCACCCGG 62.375 65.000 0.00 0.00 34.04 5.73
499 500 1.068753 CTAGGCTCATCTGCACCCG 59.931 63.158 0.00 0.00 34.04 5.28
500 501 1.449353 CCTAGGCTCATCTGCACCC 59.551 63.158 0.00 0.00 34.04 4.61
501 502 1.227793 GCCTAGGCTCATCTGCACC 60.228 63.158 27.17 0.00 38.26 5.01
502 503 0.813210 GTGCCTAGGCTCATCTGCAC 60.813 60.000 33.07 17.16 41.75 4.57
503 504 1.524002 GTGCCTAGGCTCATCTGCA 59.476 57.895 33.07 8.77 42.51 4.41
504 505 1.227793 GGTGCCTAGGCTCATCTGC 60.228 63.158 33.07 13.49 42.51 4.26
505 506 1.068753 CGGTGCCTAGGCTCATCTG 59.931 63.158 33.07 20.42 42.51 2.90
506 507 0.687757 TTCGGTGCCTAGGCTCATCT 60.688 55.000 33.07 0.00 42.51 2.90
507 508 0.178068 TTTCGGTGCCTAGGCTCATC 59.822 55.000 33.07 19.66 42.51 2.92
508 509 0.107654 GTTTCGGTGCCTAGGCTCAT 60.108 55.000 33.07 0.00 42.51 2.90
509 510 1.295423 GTTTCGGTGCCTAGGCTCA 59.705 57.895 33.07 12.84 42.51 4.26
510 511 1.810030 CGTTTCGGTGCCTAGGCTC 60.810 63.158 33.07 28.77 42.51 4.70
511 512 2.264794 CGTTTCGGTGCCTAGGCT 59.735 61.111 33.07 0.00 42.51 4.58
512 513 3.497031 GCGTTTCGGTGCCTAGGC 61.497 66.667 27.71 27.71 42.35 3.93
518 519 4.811761 GATGCGGCGTTTCGGTGC 62.812 66.667 9.37 0.00 0.00 5.01
519 520 4.160635 GGATGCGGCGTTTCGGTG 62.161 66.667 9.37 0.00 0.00 4.94
522 523 3.427425 TTGGGATGCGGCGTTTCG 61.427 61.111 9.37 0.00 0.00 3.46
523 524 2.178273 GTTGGGATGCGGCGTTTC 59.822 61.111 9.37 5.67 0.00 2.78
524 525 2.282180 AGTTGGGATGCGGCGTTT 60.282 55.556 9.37 0.00 0.00 3.60
525 526 3.055719 CAGTTGGGATGCGGCGTT 61.056 61.111 9.37 0.00 0.00 4.84
527 528 4.776322 TCCAGTTGGGATGCGGCG 62.776 66.667 0.51 0.51 42.15 6.46
534 535 6.134535 ACACAGTAATATTTCCAGTTGGGA 57.865 37.500 0.00 0.00 46.61 4.37
535 536 7.110155 AGTACACAGTAATATTTCCAGTTGGG 58.890 38.462 0.00 0.00 35.41 4.12
536 537 8.561738 AAGTACACAGTAATATTTCCAGTTGG 57.438 34.615 0.00 0.00 0.00 3.77
537 538 9.436957 AGAAGTACACAGTAATATTTCCAGTTG 57.563 33.333 0.00 0.00 0.00 3.16
538 539 9.654663 GAGAAGTACACAGTAATATTTCCAGTT 57.345 33.333 0.00 0.00 0.00 3.16
539 540 8.812972 TGAGAAGTACACAGTAATATTTCCAGT 58.187 33.333 0.00 0.00 0.00 4.00
540 541 9.653287 TTGAGAAGTACACAGTAATATTTCCAG 57.347 33.333 0.00 0.00 0.00 3.86
545 546 9.998106 ACAGTTTGAGAAGTACACAGTAATATT 57.002 29.630 0.00 0.00 0.00 1.28
547 548 9.903682 GTACAGTTTGAGAAGTACACAGTAATA 57.096 33.333 0.00 0.00 37.40 0.98
548 549 8.418662 TGTACAGTTTGAGAAGTACACAGTAAT 58.581 33.333 0.00 0.00 41.13 1.89
549 550 7.774134 TGTACAGTTTGAGAAGTACACAGTAA 58.226 34.615 0.00 0.00 41.13 2.24
550 551 7.337480 TGTACAGTTTGAGAAGTACACAGTA 57.663 36.000 0.00 0.00 41.13 2.74
551 552 6.216801 TGTACAGTTTGAGAAGTACACAGT 57.783 37.500 0.00 0.00 41.13 3.55
555 556 5.808540 GTGTGTGTACAGTTTGAGAAGTACA 59.191 40.000 0.00 0.00 43.04 2.90
556 557 6.019801 CAGTGTGTGTACAGTTTGAGAAGTAC 60.020 42.308 0.00 0.00 38.40 2.73
557 558 6.040247 CAGTGTGTGTACAGTTTGAGAAGTA 58.960 40.000 0.00 0.00 38.40 2.24
558 559 4.870426 CAGTGTGTGTACAGTTTGAGAAGT 59.130 41.667 0.00 0.00 38.40 3.01
559 560 4.260375 GCAGTGTGTGTACAGTTTGAGAAG 60.260 45.833 0.00 0.00 38.40 2.85
560 561 3.621268 GCAGTGTGTGTACAGTTTGAGAA 59.379 43.478 0.00 0.00 38.40 2.87
561 562 3.194861 GCAGTGTGTGTACAGTTTGAGA 58.805 45.455 0.00 0.00 38.40 3.27
562 563 2.287915 GGCAGTGTGTGTACAGTTTGAG 59.712 50.000 0.00 0.00 38.40 3.02
563 564 2.285083 GGCAGTGTGTGTACAGTTTGA 58.715 47.619 0.00 0.00 38.40 2.69
564 565 2.013400 TGGCAGTGTGTGTACAGTTTG 58.987 47.619 0.00 0.00 38.40 2.93
565 566 2.411628 TGGCAGTGTGTGTACAGTTT 57.588 45.000 0.00 0.00 38.40 2.66
566 567 2.618241 CAATGGCAGTGTGTGTACAGTT 59.382 45.455 6.80 0.00 38.40 3.16
567 568 2.158827 TCAATGGCAGTGTGTGTACAGT 60.159 45.455 15.19 0.00 41.09 3.55
568 569 2.481568 CTCAATGGCAGTGTGTGTACAG 59.518 50.000 15.19 0.00 37.52 2.74
569 570 2.493035 CTCAATGGCAGTGTGTGTACA 58.507 47.619 15.19 0.00 0.00 2.90
570 571 1.806542 CCTCAATGGCAGTGTGTGTAC 59.193 52.381 15.19 0.00 0.00 2.90
571 572 1.696884 TCCTCAATGGCAGTGTGTGTA 59.303 47.619 15.19 0.00 35.26 2.90
572 573 0.473755 TCCTCAATGGCAGTGTGTGT 59.526 50.000 15.19 0.00 35.26 3.72
573 574 1.830279 ATCCTCAATGGCAGTGTGTG 58.170 50.000 15.19 6.94 35.26 3.82
574 575 2.592102 AATCCTCAATGGCAGTGTGT 57.408 45.000 15.19 0.00 35.26 3.72
575 576 3.947910 AAAATCCTCAATGGCAGTGTG 57.052 42.857 15.19 12.34 35.26 3.82
576 577 5.625197 GCAATAAAATCCTCAATGGCAGTGT 60.625 40.000 15.19 0.00 35.26 3.55
577 578 4.807304 GCAATAAAATCCTCAATGGCAGTG 59.193 41.667 8.96 8.96 35.26 3.66
578 579 4.141869 GGCAATAAAATCCTCAATGGCAGT 60.142 41.667 0.00 0.00 35.26 4.40
579 580 4.141892 TGGCAATAAAATCCTCAATGGCAG 60.142 41.667 0.00 0.00 37.03 4.85
580 581 3.773667 TGGCAATAAAATCCTCAATGGCA 59.226 39.130 0.00 0.00 39.18 4.92
581 582 4.405116 TGGCAATAAAATCCTCAATGGC 57.595 40.909 0.00 0.00 35.26 4.40
582 583 6.584488 TGAATGGCAATAAAATCCTCAATGG 58.416 36.000 0.00 0.00 37.10 3.16
583 584 8.671384 AATGAATGGCAATAAAATCCTCAATG 57.329 30.769 0.00 0.00 0.00 2.82
584 585 9.116067 CAAATGAATGGCAATAAAATCCTCAAT 57.884 29.630 0.00 0.00 0.00 2.57
609 610 0.758685 CCTTGTCCAAAAGGCCCACA 60.759 55.000 0.00 0.00 40.37 4.17
619 620 1.228124 CGTCTTGGGCCTTGTCCAA 60.228 57.895 4.53 0.00 45.69 3.53
623 624 1.002134 CCATCGTCTTGGGCCTTGT 60.002 57.895 4.53 0.00 32.80 3.16
868 897 2.920384 GAGAGATCCCTCGGGCCC 60.920 72.222 13.57 13.57 44.08 5.80
943 975 0.396695 AATCCCGGAGCGAGGTTAGA 60.397 55.000 0.73 0.00 0.00 2.10
954 986 0.035598 TGCAAACGAGAAATCCCGGA 59.964 50.000 0.73 0.00 0.00 5.14
969 1001 3.069443 GTCACCCAAAGAATTTCCTGCAA 59.931 43.478 0.00 0.00 35.03 4.08
984 1016 1.556373 CCATCTCCTGCAGTCACCCA 61.556 60.000 13.81 0.00 0.00 4.51
1085 1121 1.366319 ATTCTCACTGCCCAAGGACT 58.634 50.000 0.00 0.00 0.00 3.85
1103 1139 5.903923 AGTGGGGGTCATAGAAAGAAAAAT 58.096 37.500 0.00 0.00 0.00 1.82
1109 1145 2.101582 CTCGAGTGGGGGTCATAGAAAG 59.898 54.545 3.62 0.00 0.00 2.62
1119 1155 2.128507 GCTACCTCTCGAGTGGGGG 61.129 68.421 31.17 23.87 33.22 5.40
1120 1156 1.379977 TGCTACCTCTCGAGTGGGG 60.380 63.158 31.17 24.16 33.22 4.96
1146 1182 7.890127 TCCTTCATATGAACTGGTGATTCTTTT 59.110 33.333 14.23 0.00 0.00 2.27
1171 1207 0.179156 CAGCGGGTGAAACATGCATC 60.179 55.000 0.00 0.00 40.42 3.91
1196 1232 1.339631 CGATAGGCACAGGGGTTTCAA 60.340 52.381 0.00 0.00 0.00 2.69
1210 1246 3.459232 TTCATCAGGCAAGACGATAGG 57.541 47.619 0.00 0.00 43.77 2.57
1292 1363 4.571580 CAGCAAACAAACAATGTGAACCAT 59.428 37.500 0.00 0.00 42.99 3.55
1304 1390 3.619483 GGTTGTTAACCCAGCAAACAAAC 59.381 43.478 2.48 0.91 46.12 2.93
1333 1424 2.417516 CTGGCCACGTCCTATCGG 59.582 66.667 0.00 0.00 34.94 4.18
1346 1437 1.434696 CAATCGCAATCCACCTGGC 59.565 57.895 0.00 0.00 34.44 4.85
1358 1449 5.763204 TGATAGGAATTAGGAAACCAATCGC 59.237 40.000 0.00 0.00 0.00 4.58
1359 1450 7.801716 TTGATAGGAATTAGGAAACCAATCG 57.198 36.000 0.00 0.00 0.00 3.34
1419 1510 2.750948 GAGTAAATCGGCCGCATCTTA 58.249 47.619 23.51 11.82 0.00 2.10
1451 1543 7.245292 ACTAGATACAGGCTTCCAAGATATCT 58.755 38.462 0.00 0.00 0.00 1.98
1467 1559 4.688879 CGCACAAGGTTTCAACTAGATACA 59.311 41.667 0.00 0.00 30.73 2.29
1486 1578 0.171231 GAAAGGAATCAAGGGCGCAC 59.829 55.000 10.83 5.15 0.00 5.34
1490 1582 6.097412 AGACATATTTGAAAGGAATCAAGGGC 59.903 38.462 0.00 0.00 40.21 5.19
1494 1586 8.125978 AGCAAGACATATTTGAAAGGAATCAA 57.874 30.769 0.00 0.00 37.53 2.57
1537 1631 1.456331 ATTGCAGCATGGTAGGCCC 60.456 57.895 0.00 0.00 35.86 5.80
1540 1634 1.753930 TCACATTGCAGCATGGTAGG 58.246 50.000 0.00 0.00 35.86 3.18
1541 1635 2.543031 GCATCACATTGCAGCATGGTAG 60.543 50.000 0.00 0.00 42.31 3.18
1542 1636 1.406180 GCATCACATTGCAGCATGGTA 59.594 47.619 0.00 0.00 42.31 3.25
1548 1642 0.100682 CCTGAGCATCACATTGCAGC 59.899 55.000 0.00 0.00 42.56 5.25
1606 1700 0.442310 CATCAACGTACGCCCAACTG 59.558 55.000 16.72 3.61 0.00 3.16
1700 1794 2.030717 CAGTAGTACCTGGCTGATAGCG 60.031 54.545 0.00 0.00 43.62 4.26
1737 1831 9.685276 AGGATGTGTTGAGATAAATGAAACATA 57.315 29.630 0.00 0.00 33.67 2.29
1745 1839 8.641498 AAGTTTGAGGATGTGTTGAGATAAAT 57.359 30.769 0.00 0.00 0.00 1.40
1750 1844 5.684704 AGAAAGTTTGAGGATGTGTTGAGA 58.315 37.500 0.00 0.00 0.00 3.27
1771 1865 9.088512 GCTAACGAAAAATATCAGAAGAGAAGA 57.911 33.333 0.00 0.00 0.00 2.87
1789 1883 6.032956 TGTCTTAATTCTCTGGCTAACGAA 57.967 37.500 0.00 0.00 0.00 3.85
1792 1886 8.950208 AATACTGTCTTAATTCTCTGGCTAAC 57.050 34.615 0.00 0.00 0.00 2.34
2037 2148 5.222027 TGGAAAATGGAGTCCAGTATGTCAA 60.222 40.000 18.69 4.56 39.04 3.18
2048 2159 5.665916 ATGAAACCATGGAAAATGGAGTC 57.334 39.130 21.47 7.90 41.64 3.36
2059 2170 4.403432 ACTGCCTCATAAATGAAACCATGG 59.597 41.667 11.19 11.19 36.18 3.66
2074 2185 9.383519 CTGAAGAGTAAATAAAATACTGCCTCA 57.616 33.333 0.00 0.00 33.85 3.86
2090 2201 5.728637 TGCTCATGAAGACTGAAGAGTAA 57.271 39.130 0.00 0.00 30.16 2.24
2091 2209 5.929058 ATGCTCATGAAGACTGAAGAGTA 57.071 39.130 0.00 0.00 30.16 2.59
2425 2778 4.447616 CCAATTATCATGTCCCCAAGCCTA 60.448 45.833 0.00 0.00 0.00 3.93
2635 2988 3.369261 GCTTCTTCTTCCTGAGCTCATGA 60.369 47.826 18.63 17.54 0.00 3.07
2731 3084 4.353737 CAATGTTAATTCCGCTCCATGTG 58.646 43.478 0.00 0.00 0.00 3.21
2732 3085 3.181487 GCAATGTTAATTCCGCTCCATGT 60.181 43.478 0.00 0.00 0.00 3.21
2739 3092 2.682856 TCTGGAGCAATGTTAATTCCGC 59.317 45.455 0.00 0.00 0.00 5.54
2740 3093 4.191544 TCTCTGGAGCAATGTTAATTCCG 58.808 43.478 0.00 0.00 0.00 4.30
2783 3136 2.608623 ACCAAAGGAAAGGTGGAATGG 58.391 47.619 0.00 0.00 36.60 3.16
2825 3179 5.836024 ACACATTCTCCTTTTAGGGTACA 57.164 39.130 0.00 0.00 35.59 2.90
2826 3180 6.111382 GGTACACATTCTCCTTTTAGGGTAC 58.889 44.000 0.00 0.00 35.59 3.34
2884 3242 8.375465 GCAAAACATTCAGATTAAATGTGCTAC 58.625 33.333 2.53 0.00 44.44 3.58
2908 3267 0.808125 ATATTTTCGCCGTTGCAGCA 59.192 45.000 0.24 0.00 37.32 4.41
2962 3321 0.447801 AGAAAATTACAGGCAGCGCG 59.552 50.000 0.00 0.00 0.00 6.86
2964 3323 1.470098 AGCAGAAAATTACAGGCAGCG 59.530 47.619 0.00 0.00 0.00 5.18
3006 3365 6.042093 TCCAGGAATGTAATGATAGGACACTC 59.958 42.308 0.00 0.00 0.00 3.51
3007 3366 5.905331 TCCAGGAATGTAATGATAGGACACT 59.095 40.000 0.00 0.00 0.00 3.55
3128 3487 3.243201 GGCTGAAAAAGGTGACAAGTGAG 60.243 47.826 0.00 0.00 0.00 3.51
3155 3514 5.598416 AAGATGATAGACACCGAATGACA 57.402 39.130 0.00 0.00 0.00 3.58
3183 3542 7.144722 TCAATTGCTCGACATTTTAGTTCAT 57.855 32.000 0.00 0.00 0.00 2.57
3201 3560 0.522626 TCACGGCTGCACATCAATTG 59.477 50.000 0.50 0.00 0.00 2.32
3224 3583 8.438676 AGGTTAAAGATGATACAGTTATGTGC 57.561 34.615 0.00 0.00 40.79 4.57
3305 3673 6.183360 CCCATGTTCTCAAATTTCAGATCTCC 60.183 42.308 0.00 0.00 0.00 3.71
3314 3682 5.336102 AGGATCACCCATGTTCTCAAATTT 58.664 37.500 0.00 0.00 37.41 1.82
3345 3717 2.097036 TGGCCAGATTCTGATTTGCAG 58.903 47.619 15.36 0.00 46.31 4.41
3347 3719 5.464030 AATATGGCCAGATTCTGATTTGC 57.536 39.130 19.93 9.35 32.44 3.68
3390 3763 2.228582 TGGTCGATGCTGAATTTGTTGG 59.771 45.455 0.00 0.00 0.00 3.77
3422 3795 5.283457 ACACACTATCATCTCCTTAAGCC 57.717 43.478 0.00 0.00 0.00 4.35
3435 3808 5.705441 TCCAACTCCAAATGAACACACTATC 59.295 40.000 0.00 0.00 0.00 2.08
3445 3818 6.068010 ACAAATACAGTCCAACTCCAAATGA 58.932 36.000 0.00 0.00 0.00 2.57
3464 3837 9.787532 CTCGAATTGTAATGTATTTGGACAAAT 57.212 29.630 14.02 14.02 42.95 2.32
3490 3863 8.921670 GTGTTTGTCCAAATACATTACAATTCC 58.078 33.333 12.86 0.00 40.61 3.01
3491 3864 9.469807 TGTGTTTGTCCAAATACATTACAATTC 57.530 29.630 15.52 0.00 43.94 2.17
3492 3865 9.474920 CTGTGTTTGTCCAAATACATTACAATT 57.525 29.630 18.52 0.00 46.27 2.32
3510 3908 6.005583 AGTTGCTCATATGAACTGTGTTTG 57.994 37.500 6.90 0.00 0.00 2.93
3516 3914 6.537660 TCTGATTGAGTTGCTCATATGAACTG 59.462 38.462 12.26 0.22 40.39 3.16
3553 3951 0.393537 GGCATCTCCAACTCCACCAG 60.394 60.000 0.00 0.00 34.01 4.00
3554 3952 1.685224 GGCATCTCCAACTCCACCA 59.315 57.895 0.00 0.00 34.01 4.17
3556 3954 1.204146 TAGGGCATCTCCAACTCCAC 58.796 55.000 0.00 0.00 36.21 4.02
3557 3955 1.559682 GTTAGGGCATCTCCAACTCCA 59.440 52.381 0.00 0.00 36.21 3.86
3560 3958 1.985159 TGTGTTAGGGCATCTCCAACT 59.015 47.619 0.00 0.00 36.21 3.16
3598 3996 2.682856 GCTGGTTCAACTGTGAAGACAA 59.317 45.455 0.00 0.00 44.44 3.18
3618 4026 0.038892 TGGACCACTAGTTCGTTCGC 60.039 55.000 0.00 0.00 0.00 4.70
3623 4031 2.927014 GCTCAGTTGGACCACTAGTTCG 60.927 54.545 0.00 0.00 0.00 3.95
3663 4071 2.569218 TAGGAGGAGCGGACCTGACC 62.569 65.000 4.99 2.07 40.73 4.02
3673 4081 1.142097 GCTCGTGGTTAGGAGGAGC 59.858 63.158 0.00 0.00 42.30 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.