Multiple sequence alignment - TraesCS5A01G031400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G031400 chr5A 100.000 2548 0 0 1 2548 28960868 28958321 0.000000e+00 4706
1 TraesCS5A01G031400 chr5D 94.097 1948 102 11 610 2548 357075968 357074025 0.000000e+00 2948
2 TraesCS5A01G031400 chr5D 93.394 1968 94 20 606 2548 44511939 44513895 0.000000e+00 2881
3 TraesCS5A01G031400 chr5D 92.626 1980 90 21 603 2548 6910288 6908331 0.000000e+00 2796
4 TraesCS5A01G031400 chr5D 93.453 611 36 3 1 610 40841831 40841224 0.000000e+00 904
5 TraesCS5A01G031400 chr5D 93.846 325 20 0 610 934 114516315 114516639 8.190000e-135 490
6 TraesCS5A01G031400 chr5D 90.884 362 29 3 610 971 275163198 275162841 1.370000e-132 483
7 TraesCS5A01G031400 chr3B 93.072 1963 103 17 608 2548 370213879 370215830 0.000000e+00 2841
8 TraesCS5A01G031400 chr3B 94.055 1228 57 9 1329 2548 707161585 707162804 0.000000e+00 1849
9 TraesCS5A01G031400 chr3B 93.680 269 7 3 2288 2548 599077691 599077425 6.610000e-106 394
10 TraesCS5A01G031400 chr3B 93.333 270 7 5 2288 2548 550863677 550863944 3.070000e-104 388
11 TraesCS5A01G031400 chrUn 93.643 1919 90 16 653 2548 43407879 43409788 0.000000e+00 2839
12 TraesCS5A01G031400 chrUn 92.915 1962 107 20 610 2545 20573301 20575256 0.000000e+00 2824
13 TraesCS5A01G031400 chr4D 92.912 1961 110 14 608 2548 78732771 78730820 0.000000e+00 2824
14 TraesCS5A01G031400 chr2B 92.339 1958 128 14 603 2548 485690845 485692792 0.000000e+00 2765
15 TraesCS5A01G031400 chr4B 92.154 1950 133 11 612 2548 251255863 251257805 0.000000e+00 2736
16 TraesCS5A01G031400 chr6D 92.540 1823 113 15 610 2420 329896761 329894950 0.000000e+00 2591
17 TraesCS5A01G031400 chr1D 91.689 373 25 3 601 971 17040747 17040379 1.750000e-141 512
18 TraesCS5A01G031400 chr2A 92.910 268 9 3 2288 2547 60138968 60138703 5.140000e-102 381
19 TraesCS5A01G031400 chr7D 83.770 191 30 1 11 201 76412166 76411977 2.010000e-41 180
20 TraesCS5A01G031400 chr7B 82.383 193 29 4 11 201 22657347 22657158 2.030000e-36 163
21 TraesCS5A01G031400 chr7B 82.474 194 27 6 11 201 22759976 22759787 2.030000e-36 163
22 TraesCS5A01G031400 chr7B 81.675 191 33 2 11 201 22874024 22873836 9.440000e-35 158
23 TraesCS5A01G031400 chr7B 81.347 193 31 4 11 201 22683341 22683152 4.390000e-33 152
24 TraesCS5A01G031400 chr7B 81.347 193 31 4 11 201 22819378 22819189 4.390000e-33 152
25 TraesCS5A01G031400 chr7B 81.347 193 31 4 11 201 22942896 22942707 4.390000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G031400 chr5A 28958321 28960868 2547 True 4706 4706 100.000 1 2548 1 chr5A.!!$R1 2547
1 TraesCS5A01G031400 chr5D 357074025 357075968 1943 True 2948 2948 94.097 610 2548 1 chr5D.!!$R4 1938
2 TraesCS5A01G031400 chr5D 44511939 44513895 1956 False 2881 2881 93.394 606 2548 1 chr5D.!!$F1 1942
3 TraesCS5A01G031400 chr5D 6908331 6910288 1957 True 2796 2796 92.626 603 2548 1 chr5D.!!$R1 1945
4 TraesCS5A01G031400 chr5D 40841224 40841831 607 True 904 904 93.453 1 610 1 chr5D.!!$R2 609
5 TraesCS5A01G031400 chr3B 370213879 370215830 1951 False 2841 2841 93.072 608 2548 1 chr3B.!!$F1 1940
6 TraesCS5A01G031400 chr3B 707161585 707162804 1219 False 1849 1849 94.055 1329 2548 1 chr3B.!!$F3 1219
7 TraesCS5A01G031400 chrUn 43407879 43409788 1909 False 2839 2839 93.643 653 2548 1 chrUn.!!$F2 1895
8 TraesCS5A01G031400 chrUn 20573301 20575256 1955 False 2824 2824 92.915 610 2545 1 chrUn.!!$F1 1935
9 TraesCS5A01G031400 chr4D 78730820 78732771 1951 True 2824 2824 92.912 608 2548 1 chr4D.!!$R1 1940
10 TraesCS5A01G031400 chr2B 485690845 485692792 1947 False 2765 2765 92.339 603 2548 1 chr2B.!!$F1 1945
11 TraesCS5A01G031400 chr4B 251255863 251257805 1942 False 2736 2736 92.154 612 2548 1 chr4B.!!$F1 1936
12 TraesCS5A01G031400 chr6D 329894950 329896761 1811 True 2591 2591 92.540 610 2420 1 chr6D.!!$R1 1810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.106708 TCGTAGCCATGCTCCATTCC 59.893 55.0 0.0 0.0 40.44 3.01 F
122 123 0.337428 AGCCATGCTCCATTCCCTTT 59.663 50.0 0.0 0.0 30.62 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1106 1216 0.038159 GGTTCCTCGGTGTGTGAGAG 60.038 60.0 0.0 0.0 35.43 3.20 R
1832 1970 1.164041 AAACACGCAAGAGAACCCCG 61.164 55.0 0.0 0.0 43.62 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.614903 TCGTGGACGTATCAGTTTGGT 59.385 47.619 0.00 0.00 40.80 3.67
43 44 2.290323 GCTCAAGGAAGCTGGGAAGTAA 60.290 50.000 0.00 0.00 39.27 2.24
50 51 5.948842 AGGAAGCTGGGAAGTAACTTTAAA 58.051 37.500 0.00 0.00 0.00 1.52
51 52 6.552932 AGGAAGCTGGGAAGTAACTTTAAAT 58.447 36.000 0.00 0.00 0.00 1.40
52 53 6.434340 AGGAAGCTGGGAAGTAACTTTAAATG 59.566 38.462 0.00 0.00 0.00 2.32
53 54 6.208797 GGAAGCTGGGAAGTAACTTTAAATGT 59.791 38.462 0.00 0.00 0.00 2.71
54 55 6.575162 AGCTGGGAAGTAACTTTAAATGTG 57.425 37.500 0.00 0.00 0.00 3.21
55 56 6.303839 AGCTGGGAAGTAACTTTAAATGTGA 58.696 36.000 0.00 0.00 0.00 3.58
56 57 6.948309 AGCTGGGAAGTAACTTTAAATGTGAT 59.052 34.615 0.00 0.00 0.00 3.06
57 58 8.107095 AGCTGGGAAGTAACTTTAAATGTGATA 58.893 33.333 0.00 0.00 0.00 2.15
58 59 8.903820 GCTGGGAAGTAACTTTAAATGTGATAT 58.096 33.333 0.00 0.00 0.00 1.63
60 61 9.747898 TGGGAAGTAACTTTAAATGTGATATGT 57.252 29.630 0.00 0.00 0.00 2.29
107 108 8.809468 AGAAGTATCTGATATATTCGTAGCCA 57.191 34.615 14.62 0.00 33.59 4.75
108 109 9.415008 AGAAGTATCTGATATATTCGTAGCCAT 57.585 33.333 14.62 0.93 33.59 4.40
109 110 9.457110 GAAGTATCTGATATATTCGTAGCCATG 57.543 37.037 0.00 0.00 0.00 3.66
110 111 7.429633 AGTATCTGATATATTCGTAGCCATGC 58.570 38.462 0.00 0.00 0.00 4.06
111 112 5.921962 TCTGATATATTCGTAGCCATGCT 57.078 39.130 0.00 0.00 43.41 3.79
112 113 5.895928 TCTGATATATTCGTAGCCATGCTC 58.104 41.667 0.00 0.00 40.44 4.26
113 114 5.011090 TGATATATTCGTAGCCATGCTCC 57.989 43.478 0.00 0.00 40.44 4.70
114 115 4.466015 TGATATATTCGTAGCCATGCTCCA 59.534 41.667 0.00 0.00 40.44 3.86
115 116 3.988976 ATATTCGTAGCCATGCTCCAT 57.011 42.857 0.00 0.00 40.44 3.41
116 117 2.645838 ATTCGTAGCCATGCTCCATT 57.354 45.000 0.00 0.00 40.44 3.16
117 118 1.953559 TTCGTAGCCATGCTCCATTC 58.046 50.000 0.00 0.00 40.44 2.67
118 119 0.106708 TCGTAGCCATGCTCCATTCC 59.893 55.000 0.00 0.00 40.44 3.01
119 120 0.886490 CGTAGCCATGCTCCATTCCC 60.886 60.000 0.00 0.00 40.44 3.97
120 121 0.475906 GTAGCCATGCTCCATTCCCT 59.524 55.000 0.00 0.00 40.44 4.20
121 122 1.133668 GTAGCCATGCTCCATTCCCTT 60.134 52.381 0.00 0.00 40.44 3.95
122 123 0.337428 AGCCATGCTCCATTCCCTTT 59.663 50.000 0.00 0.00 30.62 3.11
123 124 1.197812 GCCATGCTCCATTCCCTTTT 58.802 50.000 0.00 0.00 0.00 2.27
124 125 2.024080 AGCCATGCTCCATTCCCTTTTA 60.024 45.455 0.00 0.00 30.62 1.52
125 126 2.363359 GCCATGCTCCATTCCCTTTTAG 59.637 50.000 0.00 0.00 0.00 1.85
126 127 3.635591 CCATGCTCCATTCCCTTTTAGT 58.364 45.455 0.00 0.00 0.00 2.24
127 128 4.026052 CCATGCTCCATTCCCTTTTAGTT 58.974 43.478 0.00 0.00 0.00 2.24
128 129 4.142093 CCATGCTCCATTCCCTTTTAGTTG 60.142 45.833 0.00 0.00 0.00 3.16
129 130 4.112634 TGCTCCATTCCCTTTTAGTTGT 57.887 40.909 0.00 0.00 0.00 3.32
130 131 5.249780 TGCTCCATTCCCTTTTAGTTGTA 57.750 39.130 0.00 0.00 0.00 2.41
131 132 5.826643 TGCTCCATTCCCTTTTAGTTGTAT 58.173 37.500 0.00 0.00 0.00 2.29
132 133 5.652014 TGCTCCATTCCCTTTTAGTTGTATG 59.348 40.000 0.00 0.00 0.00 2.39
133 134 5.652452 GCTCCATTCCCTTTTAGTTGTATGT 59.348 40.000 0.00 0.00 0.00 2.29
134 135 6.152831 GCTCCATTCCCTTTTAGTTGTATGTT 59.847 38.462 0.00 0.00 0.00 2.71
135 136 7.628580 GCTCCATTCCCTTTTAGTTGTATGTTC 60.629 40.741 0.00 0.00 0.00 3.18
136 137 6.373216 TCCATTCCCTTTTAGTTGTATGTTCG 59.627 38.462 0.00 0.00 0.00 3.95
137 138 6.373216 CCATTCCCTTTTAGTTGTATGTTCGA 59.627 38.462 0.00 0.00 0.00 3.71
138 139 7.094549 CCATTCCCTTTTAGTTGTATGTTCGAA 60.095 37.037 0.00 0.00 0.00 3.71
139 140 7.989416 TTCCCTTTTAGTTGTATGTTCGAAT 57.011 32.000 0.00 0.00 0.00 3.34
140 141 7.372451 TCCCTTTTAGTTGTATGTTCGAATG 57.628 36.000 0.00 0.00 0.00 2.67
141 142 6.938030 TCCCTTTTAGTTGTATGTTCGAATGT 59.062 34.615 0.00 0.00 0.00 2.71
142 143 7.118680 TCCCTTTTAGTTGTATGTTCGAATGTC 59.881 37.037 0.00 0.00 0.00 3.06
143 144 7.119262 CCCTTTTAGTTGTATGTTCGAATGTCT 59.881 37.037 0.00 0.00 0.00 3.41
144 145 9.146984 CCTTTTAGTTGTATGTTCGAATGTCTA 57.853 33.333 0.00 0.00 0.00 2.59
148 149 9.701098 TTAGTTGTATGTTCGAATGTCTAAACT 57.299 29.630 0.00 10.11 0.00 2.66
149 150 8.603242 AGTTGTATGTTCGAATGTCTAAACTT 57.397 30.769 0.00 0.00 0.00 2.66
150 151 8.495949 AGTTGTATGTTCGAATGTCTAAACTTG 58.504 33.333 0.00 0.00 0.00 3.16
151 152 6.827641 TGTATGTTCGAATGTCTAAACTTGC 58.172 36.000 0.00 0.00 0.00 4.01
152 153 5.940192 ATGTTCGAATGTCTAAACTTGCA 57.060 34.783 0.00 0.00 0.00 4.08
153 154 5.090652 TGTTCGAATGTCTAAACTTGCAC 57.909 39.130 0.00 0.00 0.00 4.57
154 155 4.814234 TGTTCGAATGTCTAAACTTGCACT 59.186 37.500 0.00 0.00 0.00 4.40
155 156 5.050363 TGTTCGAATGTCTAAACTTGCACTC 60.050 40.000 0.00 0.00 0.00 3.51
156 157 3.994392 TCGAATGTCTAAACTTGCACTCC 59.006 43.478 0.00 0.00 0.00 3.85
157 158 3.125316 CGAATGTCTAAACTTGCACTCCC 59.875 47.826 0.00 0.00 0.00 4.30
158 159 4.327680 GAATGTCTAAACTTGCACTCCCT 58.672 43.478 0.00 0.00 0.00 4.20
159 160 3.857157 TGTCTAAACTTGCACTCCCTT 57.143 42.857 0.00 0.00 0.00 3.95
160 161 4.164843 TGTCTAAACTTGCACTCCCTTT 57.835 40.909 0.00 0.00 0.00 3.11
161 162 4.532834 TGTCTAAACTTGCACTCCCTTTT 58.467 39.130 0.00 0.00 0.00 2.27
162 163 4.338118 TGTCTAAACTTGCACTCCCTTTTG 59.662 41.667 0.00 0.00 0.00 2.44
163 164 4.338400 GTCTAAACTTGCACTCCCTTTTGT 59.662 41.667 0.00 0.00 0.00 2.83
164 165 3.801114 AAACTTGCACTCCCTTTTGTC 57.199 42.857 0.00 0.00 0.00 3.18
165 166 2.736670 ACTTGCACTCCCTTTTGTCT 57.263 45.000 0.00 0.00 0.00 3.41
166 167 2.301346 ACTTGCACTCCCTTTTGTCTG 58.699 47.619 0.00 0.00 0.00 3.51
167 168 2.092429 ACTTGCACTCCCTTTTGTCTGA 60.092 45.455 0.00 0.00 0.00 3.27
168 169 2.727123 TGCACTCCCTTTTGTCTGAA 57.273 45.000 0.00 0.00 0.00 3.02
169 170 3.228188 TGCACTCCCTTTTGTCTGAAT 57.772 42.857 0.00 0.00 0.00 2.57
170 171 2.886523 TGCACTCCCTTTTGTCTGAATG 59.113 45.455 0.00 0.00 0.00 2.67
171 172 2.229784 GCACTCCCTTTTGTCTGAATGG 59.770 50.000 0.00 0.00 0.00 3.16
172 173 3.490348 CACTCCCTTTTGTCTGAATGGT 58.510 45.455 0.00 0.00 0.00 3.55
173 174 4.651778 CACTCCCTTTTGTCTGAATGGTA 58.348 43.478 0.00 0.00 0.00 3.25
174 175 5.256474 CACTCCCTTTTGTCTGAATGGTAT 58.744 41.667 0.00 0.00 0.00 2.73
175 176 5.711976 CACTCCCTTTTGTCTGAATGGTATT 59.288 40.000 0.00 0.00 0.00 1.89
176 177 6.209391 CACTCCCTTTTGTCTGAATGGTATTT 59.791 38.462 0.00 0.00 0.00 1.40
177 178 6.434340 ACTCCCTTTTGTCTGAATGGTATTTC 59.566 38.462 0.00 0.00 0.00 2.17
178 179 6.310941 TCCCTTTTGTCTGAATGGTATTTCA 58.689 36.000 0.00 0.00 34.55 2.69
179 180 6.953520 TCCCTTTTGTCTGAATGGTATTTCAT 59.046 34.615 0.00 0.00 35.20 2.57
180 181 7.037438 CCCTTTTGTCTGAATGGTATTTCATG 58.963 38.462 0.00 0.00 35.20 3.07
181 182 7.093814 CCCTTTTGTCTGAATGGTATTTCATGA 60.094 37.037 0.00 0.00 35.20 3.07
182 183 7.972277 CCTTTTGTCTGAATGGTATTTCATGAG 59.028 37.037 0.00 0.00 35.20 2.90
183 184 6.441093 TTGTCTGAATGGTATTTCATGAGC 57.559 37.500 0.00 0.00 35.20 4.26
184 185 5.499313 TGTCTGAATGGTATTTCATGAGCA 58.501 37.500 0.00 0.00 35.20 4.26
185 186 5.945191 TGTCTGAATGGTATTTCATGAGCAA 59.055 36.000 0.00 0.00 35.20 3.91
186 187 6.604396 TGTCTGAATGGTATTTCATGAGCAAT 59.396 34.615 0.00 0.00 35.20 3.56
187 188 7.137426 GTCTGAATGGTATTTCATGAGCAATC 58.863 38.462 0.00 0.00 35.20 2.67
188 189 6.829811 TCTGAATGGTATTTCATGAGCAATCA 59.170 34.615 0.00 0.00 35.20 2.57
189 190 7.339976 TCTGAATGGTATTTCATGAGCAATCAA 59.660 33.333 0.00 0.00 33.80 2.57
190 191 7.838884 TGAATGGTATTTCATGAGCAATCAAA 58.161 30.769 0.00 0.00 31.81 2.69
191 192 8.312564 TGAATGGTATTTCATGAGCAATCAAAA 58.687 29.630 0.00 0.00 31.81 2.44
192 193 9.321562 GAATGGTATTTCATGAGCAATCAAAAT 57.678 29.630 0.00 0.00 0.00 1.82
193 194 9.675464 AATGGTATTTCATGAGCAATCAAAATT 57.325 25.926 0.00 0.00 0.00 1.82
194 195 8.481974 TGGTATTTCATGAGCAATCAAAATTG 57.518 30.769 0.00 0.00 44.31 2.32
195 196 8.095792 TGGTATTTCATGAGCAATCAAAATTGT 58.904 29.630 0.00 0.00 43.54 2.71
196 197 8.938906 GGTATTTCATGAGCAATCAAAATTGTT 58.061 29.630 0.00 0.00 43.54 2.83
203 204 6.991485 GAGCAATCAAAATTGTTCGAAGAA 57.009 33.333 10.43 10.43 41.35 2.52
204 205 7.393551 GAGCAATCAAAATTGTTCGAAGAAA 57.606 32.000 12.11 3.74 41.35 2.52
205 206 7.769272 AGCAATCAAAATTGTTCGAAGAAAA 57.231 28.000 12.11 1.12 43.54 2.29
206 207 8.369218 AGCAATCAAAATTGTTCGAAGAAAAT 57.631 26.923 12.11 3.53 43.54 1.82
207 208 8.829612 AGCAATCAAAATTGTTCGAAGAAAATT 58.170 25.926 12.11 9.26 43.54 1.82
208 209 9.437045 GCAATCAAAATTGTTCGAAGAAAATTT 57.563 25.926 12.11 14.12 43.54 1.82
265 266 9.278978 TGTATCACAATACAAATGTGTAGTTGT 57.721 29.630 13.64 13.64 46.42 3.32
266 267 9.541724 GTATCACAATACAAATGTGTAGTTGTG 57.458 33.333 26.06 26.06 45.96 3.33
267 268 6.434596 TCACAATACAAATGTGTAGTTGTGC 58.565 36.000 26.58 0.00 45.32 4.57
268 269 6.262049 TCACAATACAAATGTGTAGTTGTGCT 59.738 34.615 26.58 8.70 45.32 4.40
269 270 7.442666 TCACAATACAAATGTGTAGTTGTGCTA 59.557 33.333 26.58 17.50 45.32 3.49
270 271 8.236586 CACAATACAAATGTGTAGTTGTGCTAT 58.763 33.333 23.50 0.00 44.03 2.97
271 272 9.443323 ACAATACAAATGTGTAGTTGTGCTATA 57.557 29.630 16.54 0.00 44.03 1.31
274 275 7.320443 ACAAATGTGTAGTTGTGCTATATGG 57.680 36.000 0.00 0.00 42.83 2.74
275 276 7.109501 ACAAATGTGTAGTTGTGCTATATGGA 58.890 34.615 0.00 0.00 42.83 3.41
276 277 7.609918 ACAAATGTGTAGTTGTGCTATATGGAA 59.390 33.333 0.00 0.00 42.83 3.53
277 278 7.553881 AATGTGTAGTTGTGCTATATGGAAC 57.446 36.000 0.00 0.00 31.50 3.62
278 279 6.294361 TGTGTAGTTGTGCTATATGGAACT 57.706 37.500 0.00 0.00 31.50 3.01
279 280 7.412853 TGTGTAGTTGTGCTATATGGAACTA 57.587 36.000 0.00 0.00 31.50 2.24
280 281 8.018537 TGTGTAGTTGTGCTATATGGAACTAT 57.981 34.615 0.00 0.00 33.07 2.12
281 282 8.141909 TGTGTAGTTGTGCTATATGGAACTATC 58.858 37.037 0.00 0.35 33.07 2.08
282 283 8.141909 GTGTAGTTGTGCTATATGGAACTATCA 58.858 37.037 0.00 0.27 33.07 2.15
283 284 8.141909 TGTAGTTGTGCTATATGGAACTATCAC 58.858 37.037 0.00 0.00 33.07 3.06
284 285 6.525629 AGTTGTGCTATATGGAACTATCACC 58.474 40.000 0.00 0.00 0.00 4.02
285 286 6.099701 AGTTGTGCTATATGGAACTATCACCA 59.900 38.462 0.00 0.00 40.57 4.17
286 287 6.686484 TGTGCTATATGGAACTATCACCAT 57.314 37.500 0.00 0.00 46.73 3.55
287 288 6.466812 TGTGCTATATGGAACTATCACCATG 58.533 40.000 0.00 0.00 45.08 3.66
288 289 5.877012 GTGCTATATGGAACTATCACCATGG 59.123 44.000 11.19 11.19 45.08 3.66
289 290 5.784906 TGCTATATGGAACTATCACCATGGA 59.215 40.000 21.47 0.00 45.08 3.41
290 291 6.272090 TGCTATATGGAACTATCACCATGGAA 59.728 38.462 21.47 6.38 45.08 3.53
291 292 7.168219 GCTATATGGAACTATCACCATGGAAA 58.832 38.462 21.47 5.96 45.08 3.13
292 293 7.665559 GCTATATGGAACTATCACCATGGAAAA 59.334 37.037 21.47 3.05 45.08 2.29
293 294 9.745018 CTATATGGAACTATCACCATGGAAAAT 57.255 33.333 21.47 10.87 45.08 1.82
297 298 8.837099 TGGAACTATCACCATGGAAAATAATT 57.163 30.769 21.47 8.77 0.00 1.40
298 299 9.265862 TGGAACTATCACCATGGAAAATAATTT 57.734 29.630 21.47 8.43 0.00 1.82
299 300 9.533253 GGAACTATCACCATGGAAAATAATTTG 57.467 33.333 21.47 2.40 0.00 2.32
329 330 9.618890 AGAATAAAAGTTGATATAGAGCAAGCA 57.381 29.630 0.00 0.00 29.90 3.91
333 334 8.970859 AAAAGTTGATATAGAGCAAGCATACT 57.029 30.769 0.00 0.00 29.90 2.12
334 335 8.970859 AAAGTTGATATAGAGCAAGCATACTT 57.029 30.769 0.00 0.00 36.19 2.24
347 348 6.064846 CAAGCATACTTGTTGTCTGAAAGT 57.935 37.500 0.00 0.00 46.84 2.66
348 349 5.679734 AGCATACTTGTTGTCTGAAAGTG 57.320 39.130 3.37 0.00 35.77 3.16
349 350 5.126067 AGCATACTTGTTGTCTGAAAGTGT 58.874 37.500 3.37 0.00 35.77 3.55
350 351 6.288294 AGCATACTTGTTGTCTGAAAGTGTA 58.712 36.000 3.37 0.00 35.77 2.90
351 352 6.765989 AGCATACTTGTTGTCTGAAAGTGTAA 59.234 34.615 3.37 0.00 35.77 2.41
352 353 7.282224 AGCATACTTGTTGTCTGAAAGTGTAAA 59.718 33.333 3.37 0.00 35.77 2.01
353 354 7.913297 GCATACTTGTTGTCTGAAAGTGTAAAA 59.087 33.333 3.37 0.00 35.77 1.52
354 355 9.438291 CATACTTGTTGTCTGAAAGTGTAAAAG 57.562 33.333 3.37 0.00 35.77 2.27
355 356 6.852664 ACTTGTTGTCTGAAAGTGTAAAAGG 58.147 36.000 0.00 0.00 33.01 3.11
356 357 6.433093 ACTTGTTGTCTGAAAGTGTAAAAGGT 59.567 34.615 0.00 0.00 33.01 3.50
357 358 6.189677 TGTTGTCTGAAAGTGTAAAAGGTG 57.810 37.500 0.00 0.00 33.76 4.00
358 359 5.941058 TGTTGTCTGAAAGTGTAAAAGGTGA 59.059 36.000 0.00 0.00 33.76 4.02
359 360 6.093495 TGTTGTCTGAAAGTGTAAAAGGTGAG 59.907 38.462 0.00 0.00 33.76 3.51
360 361 5.741011 TGTCTGAAAGTGTAAAAGGTGAGT 58.259 37.500 0.00 0.00 33.76 3.41
361 362 6.177610 TGTCTGAAAGTGTAAAAGGTGAGTT 58.822 36.000 0.00 0.00 33.76 3.01
362 363 6.093495 TGTCTGAAAGTGTAAAAGGTGAGTTG 59.907 38.462 0.00 0.00 33.76 3.16
363 364 5.065988 TCTGAAAGTGTAAAAGGTGAGTTGC 59.934 40.000 0.00 0.00 33.76 4.17
364 365 4.947388 TGAAAGTGTAAAAGGTGAGTTGCT 59.053 37.500 0.00 0.00 0.00 3.91
365 366 6.116806 TGAAAGTGTAAAAGGTGAGTTGCTA 58.883 36.000 0.00 0.00 0.00 3.49
366 367 6.600032 TGAAAGTGTAAAAGGTGAGTTGCTAA 59.400 34.615 0.00 0.00 0.00 3.09
367 368 7.284489 TGAAAGTGTAAAAGGTGAGTTGCTAAT 59.716 33.333 0.00 0.00 0.00 1.73
368 369 6.560253 AGTGTAAAAGGTGAGTTGCTAATG 57.440 37.500 0.00 0.00 0.00 1.90
369 370 6.062095 AGTGTAAAAGGTGAGTTGCTAATGT 58.938 36.000 0.00 0.00 0.00 2.71
370 371 6.546034 AGTGTAAAAGGTGAGTTGCTAATGTT 59.454 34.615 0.00 0.00 0.00 2.71
371 372 6.856426 GTGTAAAAGGTGAGTTGCTAATGTTC 59.144 38.462 0.00 0.00 0.00 3.18
372 373 5.453567 AAAAGGTGAGTTGCTAATGTTCC 57.546 39.130 0.00 0.00 0.00 3.62
373 374 3.788227 AGGTGAGTTGCTAATGTTCCA 57.212 42.857 0.00 0.00 0.00 3.53
374 375 4.098914 AGGTGAGTTGCTAATGTTCCAA 57.901 40.909 0.00 0.00 0.00 3.53
375 376 3.821033 AGGTGAGTTGCTAATGTTCCAAC 59.179 43.478 0.00 0.00 39.20 3.77
376 377 3.568007 GGTGAGTTGCTAATGTTCCAACA 59.432 43.478 5.66 0.00 44.06 3.33
377 378 4.537015 GTGAGTTGCTAATGTTCCAACAC 58.463 43.478 5.66 0.00 42.51 3.32
378 379 4.036262 GTGAGTTGCTAATGTTCCAACACA 59.964 41.667 5.66 2.82 42.51 3.72
379 380 4.826733 TGAGTTGCTAATGTTCCAACACAT 59.173 37.500 5.66 0.00 42.51 3.21
380 381 6.000840 TGAGTTGCTAATGTTCCAACACATA 58.999 36.000 5.66 0.00 42.51 2.29
381 382 6.488344 TGAGTTGCTAATGTTCCAACACATAA 59.512 34.615 5.66 0.00 42.51 1.90
382 383 7.176515 TGAGTTGCTAATGTTCCAACACATAAT 59.823 33.333 5.66 0.00 42.51 1.28
383 384 7.895759 AGTTGCTAATGTTCCAACACATAATT 58.104 30.769 5.66 0.00 42.51 1.40
384 385 9.019656 AGTTGCTAATGTTCCAACACATAATTA 57.980 29.630 5.66 0.00 42.51 1.40
385 386 9.801873 GTTGCTAATGTTCCAACACATAATTAT 57.198 29.630 0.00 0.00 42.51 1.28
410 411 9.887629 ATTTATGGACAACAATATGATGCAAAA 57.112 25.926 0.00 0.00 0.00 2.44
411 412 9.716531 TTTATGGACAACAATATGATGCAAAAA 57.283 25.926 0.00 0.00 0.00 1.94
412 413 7.837202 ATGGACAACAATATGATGCAAAAAG 57.163 32.000 0.00 0.00 0.00 2.27
413 414 6.757237 TGGACAACAATATGATGCAAAAAGT 58.243 32.000 0.00 0.00 0.00 2.66
414 415 7.890515 TGGACAACAATATGATGCAAAAAGTA 58.109 30.769 0.00 0.00 0.00 2.24
415 416 8.530311 TGGACAACAATATGATGCAAAAAGTAT 58.470 29.630 0.00 0.00 0.00 2.12
416 417 9.369904 GGACAACAATATGATGCAAAAAGTATT 57.630 29.630 0.00 0.00 0.00 1.89
418 419 9.926158 ACAACAATATGATGCAAAAAGTATTCA 57.074 25.926 0.00 0.00 0.00 2.57
430 431 9.409312 TGCAAAAAGTATTCATTATCACAAGTG 57.591 29.630 0.00 0.00 0.00 3.16
431 432 9.624697 GCAAAAAGTATTCATTATCACAAGTGA 57.375 29.630 5.24 5.24 44.59 3.41
437 438 9.113838 AGTATTCATTATCACAAGTGAATGACC 57.886 33.333 14.08 7.93 43.58 4.02
438 439 6.757897 TTCATTATCACAAGTGAATGACCC 57.242 37.500 14.08 0.00 43.58 4.46
439 440 5.814481 TCATTATCACAAGTGAATGACCCA 58.186 37.500 7.02 0.00 43.58 4.51
440 441 6.244654 TCATTATCACAAGTGAATGACCCAA 58.755 36.000 7.02 0.00 43.58 4.12
441 442 6.718912 TCATTATCACAAGTGAATGACCCAAA 59.281 34.615 7.02 0.00 43.58 3.28
442 443 4.853924 ATCACAAGTGAATGACCCAAAC 57.146 40.909 7.02 0.00 43.58 2.93
443 444 3.897239 TCACAAGTGAATGACCCAAACT 58.103 40.909 0.00 0.00 36.53 2.66
444 445 5.042463 TCACAAGTGAATGACCCAAACTA 57.958 39.130 0.00 0.00 36.53 2.24
445 446 5.630121 TCACAAGTGAATGACCCAAACTAT 58.370 37.500 0.00 0.00 36.53 2.12
446 447 6.068010 TCACAAGTGAATGACCCAAACTATT 58.932 36.000 0.00 0.00 36.53 1.73
447 448 6.549364 TCACAAGTGAATGACCCAAACTATTT 59.451 34.615 0.00 0.00 36.53 1.40
448 449 7.069331 TCACAAGTGAATGACCCAAACTATTTT 59.931 33.333 0.00 0.00 36.53 1.82
449 450 7.169645 CACAAGTGAATGACCCAAACTATTTTG 59.830 37.037 0.00 0.00 41.71 2.44
450 451 5.783111 AGTGAATGACCCAAACTATTTTGC 58.217 37.500 0.16 0.00 40.84 3.68
451 452 5.304101 AGTGAATGACCCAAACTATTTTGCA 59.696 36.000 0.16 0.00 40.84 4.08
452 453 5.988561 GTGAATGACCCAAACTATTTTGCAA 59.011 36.000 0.00 0.00 40.84 4.08
453 454 5.988561 TGAATGACCCAAACTATTTTGCAAC 59.011 36.000 0.00 0.00 40.84 4.17
454 455 5.806654 ATGACCCAAACTATTTTGCAACT 57.193 34.783 0.00 0.00 40.84 3.16
455 456 4.942852 TGACCCAAACTATTTTGCAACTG 58.057 39.130 0.00 0.00 40.84 3.16
456 457 4.646945 TGACCCAAACTATTTTGCAACTGA 59.353 37.500 0.00 0.00 40.84 3.41
457 458 5.304101 TGACCCAAACTATTTTGCAACTGAT 59.696 36.000 0.00 0.00 40.84 2.90
458 459 6.173427 ACCCAAACTATTTTGCAACTGATT 57.827 33.333 0.00 0.00 40.84 2.57
459 460 7.014711 TGACCCAAACTATTTTGCAACTGATTA 59.985 33.333 0.00 0.00 40.84 1.75
460 461 7.906327 ACCCAAACTATTTTGCAACTGATTAT 58.094 30.769 0.00 0.00 40.84 1.28
461 462 8.374743 ACCCAAACTATTTTGCAACTGATTATT 58.625 29.630 0.00 0.00 40.84 1.40
462 463 9.218440 CCCAAACTATTTTGCAACTGATTATTT 57.782 29.630 0.00 0.00 40.84 1.40
489 490 8.835467 TTTGAGAGAACAAAACAACTTTATCG 57.165 30.769 0.00 0.00 36.92 2.92
490 491 6.427150 TGAGAGAACAAAACAACTTTATCGC 58.573 36.000 0.00 0.00 0.00 4.58
491 492 5.758924 AGAGAACAAAACAACTTTATCGCC 58.241 37.500 0.00 0.00 0.00 5.54
492 493 5.531287 AGAGAACAAAACAACTTTATCGCCT 59.469 36.000 0.00 0.00 0.00 5.52
493 494 6.708949 AGAGAACAAAACAACTTTATCGCCTA 59.291 34.615 0.00 0.00 0.00 3.93
494 495 6.665465 AGAACAAAACAACTTTATCGCCTAC 58.335 36.000 0.00 0.00 0.00 3.18
495 496 5.366829 ACAAAACAACTTTATCGCCTACC 57.633 39.130 0.00 0.00 0.00 3.18
496 497 5.067954 ACAAAACAACTTTATCGCCTACCT 58.932 37.500 0.00 0.00 0.00 3.08
497 498 5.533528 ACAAAACAACTTTATCGCCTACCTT 59.466 36.000 0.00 0.00 0.00 3.50
498 499 6.711645 ACAAAACAACTTTATCGCCTACCTTA 59.288 34.615 0.00 0.00 0.00 2.69
499 500 7.229106 ACAAAACAACTTTATCGCCTACCTTAA 59.771 33.333 0.00 0.00 0.00 1.85
500 501 7.748691 AAACAACTTTATCGCCTACCTTAAA 57.251 32.000 0.00 0.00 0.00 1.52
501 502 7.933215 AACAACTTTATCGCCTACCTTAAAT 57.067 32.000 0.00 0.00 0.00 1.40
502 503 7.316544 ACAACTTTATCGCCTACCTTAAATG 57.683 36.000 0.00 0.00 0.00 2.32
503 504 7.107542 ACAACTTTATCGCCTACCTTAAATGA 58.892 34.615 0.00 0.00 0.00 2.57
504 505 7.280205 ACAACTTTATCGCCTACCTTAAATGAG 59.720 37.037 0.00 0.00 0.00 2.90
505 506 5.758784 ACTTTATCGCCTACCTTAAATGAGC 59.241 40.000 0.00 0.00 0.00 4.26
506 507 5.546621 TTATCGCCTACCTTAAATGAGCT 57.453 39.130 0.00 0.00 0.00 4.09
507 508 3.906720 TCGCCTACCTTAAATGAGCTT 57.093 42.857 0.00 0.00 0.00 3.74
508 509 5.546621 ATCGCCTACCTTAAATGAGCTTA 57.453 39.130 0.00 0.00 0.00 3.09
509 510 5.546621 TCGCCTACCTTAAATGAGCTTAT 57.453 39.130 0.00 0.00 0.00 1.73
510 511 6.659745 TCGCCTACCTTAAATGAGCTTATA 57.340 37.500 0.00 0.00 0.00 0.98
511 512 7.241042 TCGCCTACCTTAAATGAGCTTATAT 57.759 36.000 0.00 0.00 0.00 0.86
512 513 7.676947 TCGCCTACCTTAAATGAGCTTATATT 58.323 34.615 0.00 0.00 0.00 1.28
513 514 8.809066 TCGCCTACCTTAAATGAGCTTATATTA 58.191 33.333 0.00 0.00 0.00 0.98
514 515 9.601217 CGCCTACCTTAAATGAGCTTATATTAT 57.399 33.333 0.00 0.00 0.00 1.28
540 541 9.720769 TTCCGATTAGTAATCCAAAGGATAATC 57.279 33.333 15.70 4.50 42.27 1.75
541 542 8.319146 TCCGATTAGTAATCCAAAGGATAATCC 58.681 37.037 15.70 0.00 42.27 3.01
542 543 8.100791 CCGATTAGTAATCCAAAGGATAATCCA 58.899 37.037 15.70 0.00 42.27 3.41
543 544 9.155975 CGATTAGTAATCCAAAGGATAATCCAG 57.844 37.037 15.70 0.00 42.27 3.86
544 545 8.870075 ATTAGTAATCCAAAGGATAATCCAGC 57.130 34.615 0.00 0.00 42.27 4.85
545 546 6.521527 AGTAATCCAAAGGATAATCCAGCT 57.478 37.500 0.00 0.00 42.27 4.24
546 547 7.633018 AGTAATCCAAAGGATAATCCAGCTA 57.367 36.000 0.00 0.00 42.27 3.32
547 548 8.224620 AGTAATCCAAAGGATAATCCAGCTAT 57.775 34.615 0.00 0.00 42.27 2.97
548 549 8.105829 AGTAATCCAAAGGATAATCCAGCTATG 58.894 37.037 0.00 0.00 42.27 2.23
549 550 5.824421 ATCCAAAGGATAATCCAGCTATGG 58.176 41.667 0.00 0.00 43.74 2.74
550 551 5.809040 ATCCAAAGGATAATCCAGCTATGGC 60.809 44.000 0.00 0.00 42.81 4.40
551 552 7.957324 ATCCAAAGGATAATCCAGCTATGGCT 61.957 42.308 0.00 0.00 44.79 4.75
563 564 3.820777 GCTATGGCTGCAAACTATAGC 57.179 47.619 21.29 21.29 39.33 2.97
564 565 3.141398 GCTATGGCTGCAAACTATAGCA 58.859 45.455 26.59 3.36 43.39 3.49
565 566 3.565482 GCTATGGCTGCAAACTATAGCAA 59.435 43.478 26.59 5.79 43.39 3.91
566 567 4.320057 GCTATGGCTGCAAACTATAGCAAG 60.320 45.833 26.59 10.12 43.39 4.01
567 568 3.348647 TGGCTGCAAACTATAGCAAGA 57.651 42.857 0.50 0.00 40.73 3.02
568 569 3.684908 TGGCTGCAAACTATAGCAAGAA 58.315 40.909 0.50 0.00 40.73 2.52
569 570 4.272489 TGGCTGCAAACTATAGCAAGAAT 58.728 39.130 0.50 0.00 40.73 2.40
570 571 5.436175 TGGCTGCAAACTATAGCAAGAATA 58.564 37.500 0.50 0.00 40.73 1.75
571 572 5.885352 TGGCTGCAAACTATAGCAAGAATAA 59.115 36.000 0.50 0.00 40.73 1.40
572 573 6.183360 TGGCTGCAAACTATAGCAAGAATAAC 60.183 38.462 0.50 0.00 40.73 1.89
573 574 6.038714 GGCTGCAAACTATAGCAAGAATAACT 59.961 38.462 0.50 0.00 40.73 2.24
574 575 7.226720 GGCTGCAAACTATAGCAAGAATAACTA 59.773 37.037 0.50 0.00 40.73 2.24
575 576 8.778358 GCTGCAAACTATAGCAAGAATAACTAT 58.222 33.333 0.00 0.00 40.73 2.12
659 660 1.723608 CCGTGTGCTCAGTTTTGCCA 61.724 55.000 0.00 0.00 0.00 4.92
667 668 2.490903 GCTCAGTTTTGCCATCAGATGT 59.509 45.455 9.64 0.00 0.00 3.06
714 718 1.738099 GTGCGCACCGACTCATTCT 60.738 57.895 30.12 0.00 0.00 2.40
733 737 1.112916 TGTGAACTCTGCCGTCTCCA 61.113 55.000 0.00 0.00 0.00 3.86
832 851 1.228862 GTGGCTTGTGGGACCCAAT 60.229 57.895 16.98 0.00 34.18 3.16
839 858 2.940514 TGTGGGACCCAATAGAGAGA 57.059 50.000 16.98 0.00 34.18 3.10
862 926 3.463944 GTTGCGGGTGTGCTATATAAGT 58.536 45.455 0.00 0.00 35.36 2.24
1009 1118 0.620556 TCCAAGCTCCATGTCTTCCC 59.379 55.000 0.00 0.00 0.00 3.97
1106 1216 2.027625 CGGCGTTGTTCAGAGGGTC 61.028 63.158 0.00 0.00 0.00 4.46
1151 1261 0.108804 ATCCGTTCTACGTGTGCAGG 60.109 55.000 0.00 0.00 40.58 4.85
1281 1391 2.103373 TCGATGCTCTAGCCAAGACTT 58.897 47.619 0.00 0.00 41.18 3.01
1326 1436 3.615592 GCATGAAGAATGGTTGTGCATGT 60.616 43.478 0.00 0.00 36.71 3.21
1434 1544 7.851228 TGAGCTTAGGATGTTGAAGAAGAATA 58.149 34.615 0.00 0.00 0.00 1.75
1616 1745 8.755028 ACCTAGTTTAAATGTTGGTCAAAGTTT 58.245 29.630 0.00 0.00 0.00 2.66
1694 1831 7.459795 AAAGGAGAAGAAATGAGGAATTCAC 57.540 36.000 7.93 1.44 38.99 3.18
1832 1970 3.243359 TCATCCAATTAGGCCCATTCC 57.757 47.619 0.00 0.00 37.29 3.01
1863 2004 6.092944 TCTCTTGCGTGTTTTTCTGTTTTCTA 59.907 34.615 0.00 0.00 0.00 2.10
1930 2071 7.707624 TTGTGGAAGCTAATTGAATCATTCT 57.292 32.000 0.00 0.00 0.00 2.40
1955 2098 9.178758 CTAGAGCCAAACAATTAAGGTTAGAAT 57.821 33.333 0.00 0.00 0.00 2.40
2095 2238 8.741841 GGTTTACACCTAGTGCCAAAATAAATA 58.258 33.333 0.00 0.00 40.44 1.40
2123 2270 8.253113 ACATTTTTAAGGGCATTACATTGAGAG 58.747 33.333 0.00 0.00 0.00 3.20
2227 2381 2.008242 TTTGTGGCATTTAGGGCTGT 57.992 45.000 0.00 0.00 0.00 4.40
2297 2451 6.778559 GGAAGGAAGGTATACATAGTGAGACT 59.221 42.308 5.01 0.00 0.00 3.24
2479 2653 5.375417 TTGCATGTTAGTTCATGACTTGG 57.625 39.130 10.28 0.00 45.41 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.674997 TCCTTGAGCACCAAACTGATAC 58.325 45.455 0.00 0.00 33.76 2.24
13 14 1.000938 GCTTCCTTGAGCACCAAACTG 60.001 52.381 0.00 0.00 42.25 3.16
18 19 1.073722 CCAGCTTCCTTGAGCACCA 59.926 57.895 0.00 0.00 45.12 4.17
21 22 0.037303 CTTCCCAGCTTCCTTGAGCA 59.963 55.000 0.00 0.00 45.12 4.26
81 82 9.901172 TGGCTACGAATATATCAGATACTTCTA 57.099 33.333 10.67 0.00 0.00 2.10
82 83 8.809468 TGGCTACGAATATATCAGATACTTCT 57.191 34.615 10.67 4.07 0.00 2.85
83 84 9.457110 CATGGCTACGAATATATCAGATACTTC 57.543 37.037 0.00 0.00 0.00 3.01
84 85 7.923344 GCATGGCTACGAATATATCAGATACTT 59.077 37.037 0.00 0.00 0.00 2.24
85 86 7.286546 AGCATGGCTACGAATATATCAGATACT 59.713 37.037 0.00 0.00 36.99 2.12
86 87 7.429633 AGCATGGCTACGAATATATCAGATAC 58.570 38.462 0.00 0.00 36.99 2.24
87 88 7.255625 GGAGCATGGCTACGAATATATCAGATA 60.256 40.741 0.00 0.00 39.88 1.98
88 89 6.462207 GGAGCATGGCTACGAATATATCAGAT 60.462 42.308 0.00 0.00 39.88 2.90
89 90 5.163509 GGAGCATGGCTACGAATATATCAGA 60.164 44.000 0.00 0.00 39.88 3.27
90 91 5.046529 GGAGCATGGCTACGAATATATCAG 58.953 45.833 0.00 0.00 39.88 2.90
91 92 4.466015 TGGAGCATGGCTACGAATATATCA 59.534 41.667 0.00 0.00 43.58 2.15
92 93 5.011090 TGGAGCATGGCTACGAATATATC 57.989 43.478 0.00 0.00 43.58 1.63
93 94 5.620738 ATGGAGCATGGCTACGAATATAT 57.379 39.130 0.00 0.00 43.58 0.86
94 95 5.419542 GAATGGAGCATGGCTACGAATATA 58.580 41.667 0.00 0.00 43.58 0.86
95 96 3.988976 ATGGAGCATGGCTACGAATAT 57.011 42.857 0.00 0.00 43.58 1.28
96 97 3.557054 GGAATGGAGCATGGCTACGAATA 60.557 47.826 0.00 0.00 43.58 1.75
97 98 2.498167 GAATGGAGCATGGCTACGAAT 58.502 47.619 0.00 0.00 43.58 3.34
98 99 1.475034 GGAATGGAGCATGGCTACGAA 60.475 52.381 0.00 0.00 43.58 3.85
99 100 0.106708 GGAATGGAGCATGGCTACGA 59.893 55.000 0.00 0.00 43.58 3.43
100 101 0.886490 GGGAATGGAGCATGGCTACG 60.886 60.000 0.00 0.00 43.58 3.51
101 102 0.475906 AGGGAATGGAGCATGGCTAC 59.524 55.000 0.00 0.00 39.88 3.58
102 103 1.225373 AAGGGAATGGAGCATGGCTA 58.775 50.000 0.00 0.00 39.88 3.93
103 104 0.337428 AAAGGGAATGGAGCATGGCT 59.663 50.000 0.00 0.00 43.88 4.75
104 105 1.197812 AAAAGGGAATGGAGCATGGC 58.802 50.000 0.00 0.00 0.00 4.40
105 106 3.635591 ACTAAAAGGGAATGGAGCATGG 58.364 45.455 0.00 0.00 0.00 3.66
106 107 4.463891 ACAACTAAAAGGGAATGGAGCATG 59.536 41.667 0.00 0.00 0.00 4.06
107 108 4.677182 ACAACTAAAAGGGAATGGAGCAT 58.323 39.130 0.00 0.00 0.00 3.79
108 109 4.112634 ACAACTAAAAGGGAATGGAGCA 57.887 40.909 0.00 0.00 0.00 4.26
109 110 5.652452 ACATACAACTAAAAGGGAATGGAGC 59.348 40.000 0.00 0.00 0.00 4.70
110 111 7.414098 CGAACATACAACTAAAAGGGAATGGAG 60.414 40.741 0.00 0.00 0.00 3.86
111 112 6.373216 CGAACATACAACTAAAAGGGAATGGA 59.627 38.462 0.00 0.00 0.00 3.41
112 113 6.373216 TCGAACATACAACTAAAAGGGAATGG 59.627 38.462 0.00 0.00 0.00 3.16
113 114 7.372451 TCGAACATACAACTAAAAGGGAATG 57.628 36.000 0.00 0.00 0.00 2.67
114 115 7.989416 TTCGAACATACAACTAAAAGGGAAT 57.011 32.000 0.00 0.00 0.00 3.01
115 116 7.446013 ACATTCGAACATACAACTAAAAGGGAA 59.554 33.333 0.00 0.00 0.00 3.97
116 117 6.938030 ACATTCGAACATACAACTAAAAGGGA 59.062 34.615 0.00 0.00 0.00 4.20
117 118 7.119262 AGACATTCGAACATACAACTAAAAGGG 59.881 37.037 0.00 0.00 0.00 3.95
118 119 8.029642 AGACATTCGAACATACAACTAAAAGG 57.970 34.615 0.00 0.00 0.00 3.11
122 123 9.701098 AGTTTAGACATTCGAACATACAACTAA 57.299 29.630 0.00 1.90 0.00 2.24
123 124 9.701098 AAGTTTAGACATTCGAACATACAACTA 57.299 29.630 0.00 0.00 0.00 2.24
124 125 8.495949 CAAGTTTAGACATTCGAACATACAACT 58.504 33.333 0.00 2.42 0.00 3.16
125 126 7.268447 GCAAGTTTAGACATTCGAACATACAAC 59.732 37.037 0.00 0.00 0.00 3.32
126 127 7.041712 TGCAAGTTTAGACATTCGAACATACAA 60.042 33.333 0.00 0.00 0.00 2.41
127 128 6.425417 TGCAAGTTTAGACATTCGAACATACA 59.575 34.615 0.00 0.00 0.00 2.29
128 129 6.736853 GTGCAAGTTTAGACATTCGAACATAC 59.263 38.462 0.00 0.00 0.00 2.39
129 130 6.649141 AGTGCAAGTTTAGACATTCGAACATA 59.351 34.615 0.00 0.00 0.00 2.29
130 131 5.470098 AGTGCAAGTTTAGACATTCGAACAT 59.530 36.000 0.00 0.00 0.00 2.71
131 132 4.814234 AGTGCAAGTTTAGACATTCGAACA 59.186 37.500 0.00 0.00 0.00 3.18
132 133 5.344207 AGTGCAAGTTTAGACATTCGAAC 57.656 39.130 0.00 0.00 0.00 3.95
133 134 4.451096 GGAGTGCAAGTTTAGACATTCGAA 59.549 41.667 0.00 0.00 0.00 3.71
134 135 3.994392 GGAGTGCAAGTTTAGACATTCGA 59.006 43.478 0.00 0.00 0.00 3.71
135 136 3.125316 GGGAGTGCAAGTTTAGACATTCG 59.875 47.826 0.00 0.00 0.00 3.34
136 137 4.327680 AGGGAGTGCAAGTTTAGACATTC 58.672 43.478 0.00 0.00 0.00 2.67
137 138 4.373156 AGGGAGTGCAAGTTTAGACATT 57.627 40.909 0.00 0.00 0.00 2.71
138 139 4.373156 AAGGGAGTGCAAGTTTAGACAT 57.627 40.909 0.00 0.00 0.00 3.06
139 140 3.857157 AAGGGAGTGCAAGTTTAGACA 57.143 42.857 0.00 0.00 0.00 3.41
140 141 4.338400 ACAAAAGGGAGTGCAAGTTTAGAC 59.662 41.667 0.00 0.00 0.00 2.59
141 142 4.532834 ACAAAAGGGAGTGCAAGTTTAGA 58.467 39.130 0.00 0.00 0.00 2.10
142 143 4.580580 AGACAAAAGGGAGTGCAAGTTTAG 59.419 41.667 0.00 0.00 0.00 1.85
143 144 4.338118 CAGACAAAAGGGAGTGCAAGTTTA 59.662 41.667 0.00 0.00 0.00 2.01
144 145 3.131046 CAGACAAAAGGGAGTGCAAGTTT 59.869 43.478 0.00 0.00 0.00 2.66
145 146 2.689983 CAGACAAAAGGGAGTGCAAGTT 59.310 45.455 0.00 0.00 0.00 2.66
146 147 2.092429 TCAGACAAAAGGGAGTGCAAGT 60.092 45.455 0.00 0.00 0.00 3.16
147 148 2.575532 TCAGACAAAAGGGAGTGCAAG 58.424 47.619 0.00 0.00 0.00 4.01
148 149 2.727123 TCAGACAAAAGGGAGTGCAA 57.273 45.000 0.00 0.00 0.00 4.08
149 150 2.727123 TTCAGACAAAAGGGAGTGCA 57.273 45.000 0.00 0.00 0.00 4.57
150 151 2.229784 CCATTCAGACAAAAGGGAGTGC 59.770 50.000 0.00 0.00 29.02 4.40
151 152 3.490348 ACCATTCAGACAAAAGGGAGTG 58.510 45.455 0.00 0.00 32.07 3.51
152 153 3.884037 ACCATTCAGACAAAAGGGAGT 57.116 42.857 0.00 0.00 32.07 3.85
153 154 6.434028 TGAAATACCATTCAGACAAAAGGGAG 59.566 38.462 0.00 0.00 34.50 4.30
154 155 6.310941 TGAAATACCATTCAGACAAAAGGGA 58.689 36.000 0.00 0.00 34.50 4.20
155 156 6.588719 TGAAATACCATTCAGACAAAAGGG 57.411 37.500 0.00 0.00 34.50 3.95
156 157 7.829725 TCATGAAATACCATTCAGACAAAAGG 58.170 34.615 0.00 0.00 42.21 3.11
157 158 7.487189 GCTCATGAAATACCATTCAGACAAAAG 59.513 37.037 0.00 0.00 42.21 2.27
158 159 7.039853 TGCTCATGAAATACCATTCAGACAAAA 60.040 33.333 0.00 0.00 42.21 2.44
159 160 6.433716 TGCTCATGAAATACCATTCAGACAAA 59.566 34.615 0.00 0.00 42.21 2.83
160 161 5.945191 TGCTCATGAAATACCATTCAGACAA 59.055 36.000 0.00 0.00 42.21 3.18
161 162 5.499313 TGCTCATGAAATACCATTCAGACA 58.501 37.500 0.00 0.00 42.21 3.41
162 163 6.441093 TTGCTCATGAAATACCATTCAGAC 57.559 37.500 0.00 0.00 42.21 3.51
163 164 6.829811 TGATTGCTCATGAAATACCATTCAGA 59.170 34.615 0.00 0.00 42.21 3.27
164 165 7.034685 TGATTGCTCATGAAATACCATTCAG 57.965 36.000 0.00 0.00 42.21 3.02
165 166 7.407393 TTGATTGCTCATGAAATACCATTCA 57.593 32.000 0.00 0.00 43.03 2.57
166 167 8.706492 TTTTGATTGCTCATGAAATACCATTC 57.294 30.769 0.00 0.00 0.00 2.67
167 168 9.675464 AATTTTGATTGCTCATGAAATACCATT 57.325 25.926 0.00 0.00 0.00 3.16
168 169 9.104965 CAATTTTGATTGCTCATGAAATACCAT 57.895 29.630 0.00 0.00 0.00 3.55
169 170 8.095792 ACAATTTTGATTGCTCATGAAATACCA 58.904 29.630 0.00 0.00 35.04 3.25
170 171 8.483307 ACAATTTTGATTGCTCATGAAATACC 57.517 30.769 0.00 0.00 35.04 2.73
171 172 9.962759 GAACAATTTTGATTGCTCATGAAATAC 57.037 29.630 0.00 0.00 35.04 1.89
172 173 8.862074 CGAACAATTTTGATTGCTCATGAAATA 58.138 29.630 0.00 0.00 35.04 1.40
173 174 7.599621 TCGAACAATTTTGATTGCTCATGAAAT 59.400 29.630 0.00 0.00 35.04 2.17
174 175 6.922407 TCGAACAATTTTGATTGCTCATGAAA 59.078 30.769 0.00 0.00 35.04 2.69
175 176 6.445475 TCGAACAATTTTGATTGCTCATGAA 58.555 32.000 0.00 0.00 35.04 2.57
176 177 6.011476 TCGAACAATTTTGATTGCTCATGA 57.989 33.333 0.00 0.00 35.04 3.07
177 178 6.583427 TCTTCGAACAATTTTGATTGCTCATG 59.417 34.615 0.00 0.00 35.04 3.07
178 179 6.680810 TCTTCGAACAATTTTGATTGCTCAT 58.319 32.000 0.00 0.00 35.04 2.90
179 180 6.070897 TCTTCGAACAATTTTGATTGCTCA 57.929 33.333 0.00 0.00 35.04 4.26
180 181 6.991485 TTCTTCGAACAATTTTGATTGCTC 57.009 33.333 0.00 0.00 35.04 4.26
181 182 7.769272 TTTTCTTCGAACAATTTTGATTGCT 57.231 28.000 0.00 0.00 35.04 3.91
182 183 8.992287 AATTTTCTTCGAACAATTTTGATTGC 57.008 26.923 0.00 0.00 35.04 3.56
215 216 9.709495 ACAAATGCTTTTATAATCATGTGTGTT 57.291 25.926 13.49 0.00 37.10 3.32
239 240 9.278978 ACAACTACACATTTGTATTGTGATACA 57.721 29.630 10.51 0.00 45.83 2.29
240 241 9.541724 CACAACTACACATTTGTATTGTGATAC 57.458 33.333 24.49 0.00 45.88 2.24
241 242 8.233868 GCACAACTACACATTTGTATTGTGATA 58.766 33.333 28.31 8.80 45.88 2.15
242 243 7.040478 AGCACAACTACACATTTGTATTGTGAT 60.040 33.333 28.31 24.42 45.88 3.06
243 244 6.262049 AGCACAACTACACATTTGTATTGTGA 59.738 34.615 28.31 2.27 45.88 3.58
244 245 6.437928 AGCACAACTACACATTTGTATTGTG 58.562 36.000 24.46 24.46 45.83 3.33
245 246 6.633500 AGCACAACTACACATTTGTATTGT 57.367 33.333 11.06 11.06 38.77 2.71
248 249 9.056005 CCATATAGCACAACTACACATTTGTAT 57.944 33.333 0.00 0.00 37.58 2.29
249 250 8.261522 TCCATATAGCACAACTACACATTTGTA 58.738 33.333 0.00 0.00 37.15 2.41
250 251 7.109501 TCCATATAGCACAACTACACATTTGT 58.890 34.615 0.00 0.00 40.02 2.83
251 252 7.552458 TCCATATAGCACAACTACACATTTG 57.448 36.000 0.00 0.00 32.32 2.32
252 253 7.829211 AGTTCCATATAGCACAACTACACATTT 59.171 33.333 0.00 0.00 32.32 2.32
253 254 7.338710 AGTTCCATATAGCACAACTACACATT 58.661 34.615 0.00 0.00 32.32 2.71
254 255 6.889198 AGTTCCATATAGCACAACTACACAT 58.111 36.000 0.00 0.00 32.32 3.21
255 256 6.294361 AGTTCCATATAGCACAACTACACA 57.706 37.500 0.00 0.00 32.32 3.72
256 257 8.141909 TGATAGTTCCATATAGCACAACTACAC 58.858 37.037 0.00 0.00 32.32 2.90
257 258 8.141909 GTGATAGTTCCATATAGCACAACTACA 58.858 37.037 0.00 0.00 38.02 2.74
258 259 7.599245 GGTGATAGTTCCATATAGCACAACTAC 59.401 40.741 3.42 0.00 39.46 2.73
259 260 7.289084 TGGTGATAGTTCCATATAGCACAACTA 59.711 37.037 3.42 0.00 39.46 2.24
260 261 6.099701 TGGTGATAGTTCCATATAGCACAACT 59.900 38.462 3.42 0.00 39.46 3.16
261 262 6.288294 TGGTGATAGTTCCATATAGCACAAC 58.712 40.000 3.42 0.00 39.46 3.32
262 263 6.493189 TGGTGATAGTTCCATATAGCACAA 57.507 37.500 3.42 0.00 39.46 3.33
263 264 6.466812 CATGGTGATAGTTCCATATAGCACA 58.533 40.000 3.42 0.00 41.79 4.57
264 265 5.877012 CCATGGTGATAGTTCCATATAGCAC 59.123 44.000 2.57 0.00 41.79 4.40
265 266 5.784906 TCCATGGTGATAGTTCCATATAGCA 59.215 40.000 12.58 0.00 41.79 3.49
266 267 6.299805 TCCATGGTGATAGTTCCATATAGC 57.700 41.667 12.58 0.00 41.79 2.97
267 268 9.745018 ATTTTCCATGGTGATAGTTCCATATAG 57.255 33.333 12.58 0.00 41.79 1.31
271 272 9.438163 AATTATTTTCCATGGTGATAGTTCCAT 57.562 29.630 12.58 0.00 44.15 3.41
272 273 8.837099 AATTATTTTCCATGGTGATAGTTCCA 57.163 30.769 12.58 0.00 38.14 3.53
273 274 9.533253 CAAATTATTTTCCATGGTGATAGTTCC 57.467 33.333 12.58 0.00 0.00 3.62
303 304 9.618890 TGCTTGCTCTATATCAACTTTTATTCT 57.381 29.630 0.00 0.00 0.00 2.40
308 309 8.970859 AGTATGCTTGCTCTATATCAACTTTT 57.029 30.769 0.00 0.00 0.00 2.27
309 310 8.834465 CAAGTATGCTTGCTCTATATCAACTTT 58.166 33.333 10.75 0.00 44.54 2.66
310 311 8.375608 CAAGTATGCTTGCTCTATATCAACTT 57.624 34.615 10.75 0.00 44.54 2.66
311 312 7.959689 CAAGTATGCTTGCTCTATATCAACT 57.040 36.000 10.75 0.00 44.54 3.16
325 326 5.590259 ACACTTTCAGACAACAAGTATGCTT 59.410 36.000 0.00 0.00 39.29 3.91
326 327 5.126067 ACACTTTCAGACAACAAGTATGCT 58.874 37.500 0.00 0.00 39.29 3.79
327 328 5.424121 ACACTTTCAGACAACAAGTATGC 57.576 39.130 0.00 0.00 39.29 3.14
328 329 9.438291 CTTTTACACTTTCAGACAACAAGTATG 57.562 33.333 0.00 0.00 40.79 2.39
329 330 8.621286 CCTTTTACACTTTCAGACAACAAGTAT 58.379 33.333 0.00 0.00 0.00 2.12
330 331 7.608761 ACCTTTTACACTTTCAGACAACAAGTA 59.391 33.333 0.00 0.00 0.00 2.24
331 332 6.433093 ACCTTTTACACTTTCAGACAACAAGT 59.567 34.615 0.00 0.00 0.00 3.16
332 333 6.747280 CACCTTTTACACTTTCAGACAACAAG 59.253 38.462 0.00 0.00 0.00 3.16
333 334 6.431543 TCACCTTTTACACTTTCAGACAACAA 59.568 34.615 0.00 0.00 0.00 2.83
334 335 5.941058 TCACCTTTTACACTTTCAGACAACA 59.059 36.000 0.00 0.00 0.00 3.33
335 336 6.093633 ACTCACCTTTTACACTTTCAGACAAC 59.906 38.462 0.00 0.00 0.00 3.32
336 337 6.177610 ACTCACCTTTTACACTTTCAGACAA 58.822 36.000 0.00 0.00 0.00 3.18
337 338 5.741011 ACTCACCTTTTACACTTTCAGACA 58.259 37.500 0.00 0.00 0.00 3.41
338 339 6.487103 CAACTCACCTTTTACACTTTCAGAC 58.513 40.000 0.00 0.00 0.00 3.51
339 340 5.065988 GCAACTCACCTTTTACACTTTCAGA 59.934 40.000 0.00 0.00 0.00 3.27
340 341 5.066505 AGCAACTCACCTTTTACACTTTCAG 59.933 40.000 0.00 0.00 0.00 3.02
341 342 4.947388 AGCAACTCACCTTTTACACTTTCA 59.053 37.500 0.00 0.00 0.00 2.69
342 343 5.500645 AGCAACTCACCTTTTACACTTTC 57.499 39.130 0.00 0.00 0.00 2.62
343 344 7.068226 ACATTAGCAACTCACCTTTTACACTTT 59.932 33.333 0.00 0.00 0.00 2.66
344 345 6.546034 ACATTAGCAACTCACCTTTTACACTT 59.454 34.615 0.00 0.00 0.00 3.16
345 346 6.062095 ACATTAGCAACTCACCTTTTACACT 58.938 36.000 0.00 0.00 0.00 3.55
346 347 6.313744 ACATTAGCAACTCACCTTTTACAC 57.686 37.500 0.00 0.00 0.00 2.90
347 348 6.016610 GGAACATTAGCAACTCACCTTTTACA 60.017 38.462 0.00 0.00 0.00 2.41
348 349 6.016610 TGGAACATTAGCAACTCACCTTTTAC 60.017 38.462 0.00 0.00 0.00 2.01
349 350 6.065374 TGGAACATTAGCAACTCACCTTTTA 58.935 36.000 0.00 0.00 0.00 1.52
350 351 4.892934 TGGAACATTAGCAACTCACCTTTT 59.107 37.500 0.00 0.00 0.00 2.27
351 352 4.469657 TGGAACATTAGCAACTCACCTTT 58.530 39.130 0.00 0.00 0.00 3.11
352 353 4.098914 TGGAACATTAGCAACTCACCTT 57.901 40.909 0.00 0.00 0.00 3.50
353 354 3.788227 TGGAACATTAGCAACTCACCT 57.212 42.857 0.00 0.00 0.00 4.00
354 355 3.568007 TGTTGGAACATTAGCAACTCACC 59.432 43.478 0.00 0.00 39.30 4.02
355 356 4.036262 TGTGTTGGAACATTAGCAACTCAC 59.964 41.667 0.00 0.00 41.59 3.51
356 357 4.203226 TGTGTTGGAACATTAGCAACTCA 58.797 39.130 0.00 0.00 41.59 3.41
357 358 4.829064 TGTGTTGGAACATTAGCAACTC 57.171 40.909 0.00 0.00 41.59 3.01
358 359 6.892658 TTATGTGTTGGAACATTAGCAACT 57.107 33.333 0.00 0.00 41.09 3.16
359 360 9.801873 ATAATTATGTGTTGGAACATTAGCAAC 57.198 29.630 0.00 0.00 41.09 4.17
384 385 9.887629 TTTTGCATCATATTGTTGTCCATAAAT 57.112 25.926 0.00 0.00 0.00 1.40
385 386 9.716531 TTTTTGCATCATATTGTTGTCCATAAA 57.283 25.926 0.00 0.00 0.00 1.40
386 387 9.368674 CTTTTTGCATCATATTGTTGTCCATAA 57.631 29.630 0.00 0.00 0.00 1.90
387 388 8.530311 ACTTTTTGCATCATATTGTTGTCCATA 58.470 29.630 0.00 0.00 0.00 2.74
388 389 7.388437 ACTTTTTGCATCATATTGTTGTCCAT 58.612 30.769 0.00 0.00 0.00 3.41
389 390 6.757237 ACTTTTTGCATCATATTGTTGTCCA 58.243 32.000 0.00 0.00 0.00 4.02
390 391 8.931385 ATACTTTTTGCATCATATTGTTGTCC 57.069 30.769 0.00 0.00 0.00 4.02
392 393 9.926158 TGAATACTTTTTGCATCATATTGTTGT 57.074 25.926 0.00 0.00 0.00 3.32
404 405 9.409312 CACTTGTGATAATGAATACTTTTTGCA 57.591 29.630 0.00 0.00 0.00 4.08
405 406 9.624697 TCACTTGTGATAATGAATACTTTTTGC 57.375 29.630 0.00 0.00 0.00 3.68
411 412 9.113838 GGTCATTCACTTGTGATAATGAATACT 57.886 33.333 15.48 0.00 39.25 2.12
412 413 8.345565 GGGTCATTCACTTGTGATAATGAATAC 58.654 37.037 15.48 10.82 39.25 1.89
413 414 8.052141 TGGGTCATTCACTTGTGATAATGAATA 58.948 33.333 15.48 6.58 39.25 1.75
414 415 6.891361 TGGGTCATTCACTTGTGATAATGAAT 59.109 34.615 15.48 0.00 41.37 2.57
415 416 6.244654 TGGGTCATTCACTTGTGATAATGAA 58.755 36.000 15.48 3.39 39.37 2.57
416 417 5.814481 TGGGTCATTCACTTGTGATAATGA 58.186 37.500 11.77 11.77 36.32 2.57
417 418 6.513806 TTGGGTCATTCACTTGTGATAATG 57.486 37.500 4.18 6.68 0.00 1.90
418 419 6.721208 AGTTTGGGTCATTCACTTGTGATAAT 59.279 34.615 4.18 0.00 0.00 1.28
419 420 6.068010 AGTTTGGGTCATTCACTTGTGATAA 58.932 36.000 4.18 0.00 0.00 1.75
420 421 5.630121 AGTTTGGGTCATTCACTTGTGATA 58.370 37.500 4.18 0.00 0.00 2.15
421 422 4.473444 AGTTTGGGTCATTCACTTGTGAT 58.527 39.130 4.18 0.00 0.00 3.06
422 423 3.897239 AGTTTGGGTCATTCACTTGTGA 58.103 40.909 0.00 0.00 0.00 3.58
423 424 5.964958 ATAGTTTGGGTCATTCACTTGTG 57.035 39.130 0.00 0.00 0.00 3.33
424 425 6.976934 AAATAGTTTGGGTCATTCACTTGT 57.023 33.333 0.00 0.00 0.00 3.16
425 426 6.146021 GCAAAATAGTTTGGGTCATTCACTTG 59.854 38.462 16.64 0.00 43.73 3.16
426 427 6.183360 TGCAAAATAGTTTGGGTCATTCACTT 60.183 34.615 16.64 0.00 43.73 3.16
427 428 5.304101 TGCAAAATAGTTTGGGTCATTCACT 59.696 36.000 16.64 0.00 43.73 3.41
428 429 5.537188 TGCAAAATAGTTTGGGTCATTCAC 58.463 37.500 16.64 0.00 43.73 3.18
429 430 5.798125 TGCAAAATAGTTTGGGTCATTCA 57.202 34.783 16.64 2.33 43.73 2.57
430 431 6.146021 CAGTTGCAAAATAGTTTGGGTCATTC 59.854 38.462 16.64 0.00 43.73 2.67
431 432 5.990996 CAGTTGCAAAATAGTTTGGGTCATT 59.009 36.000 16.64 0.00 43.73 2.57
432 433 5.304101 TCAGTTGCAAAATAGTTTGGGTCAT 59.696 36.000 16.64 0.00 43.73 3.06
433 434 4.646945 TCAGTTGCAAAATAGTTTGGGTCA 59.353 37.500 16.64 4.34 43.73 4.02
434 435 5.195001 TCAGTTGCAAAATAGTTTGGGTC 57.805 39.130 16.64 1.82 43.73 4.46
435 436 5.806654 ATCAGTTGCAAAATAGTTTGGGT 57.193 34.783 16.64 0.00 43.73 4.51
436 437 8.776376 AATAATCAGTTGCAAAATAGTTTGGG 57.224 30.769 16.64 0.00 43.73 4.12
463 464 9.450807 CGATAAAGTTGTTTTGTTCTCTCAAAT 57.549 29.630 0.00 0.00 37.20 2.32
464 465 7.431084 GCGATAAAGTTGTTTTGTTCTCTCAAA 59.569 33.333 0.00 0.00 35.83 2.69
465 466 6.910433 GCGATAAAGTTGTTTTGTTCTCTCAA 59.090 34.615 0.00 0.00 0.00 3.02
466 467 6.427150 GCGATAAAGTTGTTTTGTTCTCTCA 58.573 36.000 0.00 0.00 0.00 3.27
467 468 5.851703 GGCGATAAAGTTGTTTTGTTCTCTC 59.148 40.000 0.00 0.00 0.00 3.20
468 469 5.531287 AGGCGATAAAGTTGTTTTGTTCTCT 59.469 36.000 0.00 0.00 0.00 3.10
469 470 5.758924 AGGCGATAAAGTTGTTTTGTTCTC 58.241 37.500 0.00 0.00 0.00 2.87
470 471 5.767816 AGGCGATAAAGTTGTTTTGTTCT 57.232 34.783 0.00 0.00 0.00 3.01
471 472 5.854866 GGTAGGCGATAAAGTTGTTTTGTTC 59.145 40.000 0.00 0.00 0.00 3.18
472 473 5.533528 AGGTAGGCGATAAAGTTGTTTTGTT 59.466 36.000 0.00 0.00 0.00 2.83
473 474 5.067954 AGGTAGGCGATAAAGTTGTTTTGT 58.932 37.500 0.00 0.00 0.00 2.83
474 475 5.622770 AGGTAGGCGATAAAGTTGTTTTG 57.377 39.130 0.00 0.00 0.00 2.44
475 476 7.748691 TTAAGGTAGGCGATAAAGTTGTTTT 57.251 32.000 0.00 0.00 0.00 2.43
476 477 7.748691 TTTAAGGTAGGCGATAAAGTTGTTT 57.251 32.000 0.00 0.00 0.00 2.83
477 478 7.608761 TCATTTAAGGTAGGCGATAAAGTTGTT 59.391 33.333 0.00 0.00 0.00 2.83
478 479 7.107542 TCATTTAAGGTAGGCGATAAAGTTGT 58.892 34.615 0.00 0.00 0.00 3.32
479 480 7.548196 TCATTTAAGGTAGGCGATAAAGTTG 57.452 36.000 0.00 0.00 0.00 3.16
480 481 6.260271 GCTCATTTAAGGTAGGCGATAAAGTT 59.740 38.462 0.00 0.00 0.00 2.66
481 482 5.758784 GCTCATTTAAGGTAGGCGATAAAGT 59.241 40.000 0.00 0.00 0.00 2.66
482 483 5.992217 AGCTCATTTAAGGTAGGCGATAAAG 59.008 40.000 0.00 0.00 0.00 1.85
483 484 5.925509 AGCTCATTTAAGGTAGGCGATAAA 58.074 37.500 0.00 0.00 0.00 1.40
484 485 5.546621 AGCTCATTTAAGGTAGGCGATAA 57.453 39.130 0.00 0.00 0.00 1.75
485 486 5.546621 AAGCTCATTTAAGGTAGGCGATA 57.453 39.130 0.00 0.00 0.00 2.92
486 487 4.423625 AAGCTCATTTAAGGTAGGCGAT 57.576 40.909 0.00 0.00 0.00 4.58
487 488 3.906720 AAGCTCATTTAAGGTAGGCGA 57.093 42.857 0.00 0.00 0.00 5.54
488 489 7.907214 AATATAAGCTCATTTAAGGTAGGCG 57.093 36.000 0.00 0.00 0.00 5.52
514 515 9.720769 GATTATCCTTTGGATTACTAATCGGAA 57.279 33.333 4.30 2.96 39.79 4.30
515 516 8.319146 GGATTATCCTTTGGATTACTAATCGGA 58.681 37.037 3.59 4.71 39.79 4.55
516 517 8.100791 TGGATTATCCTTTGGATTACTAATCGG 58.899 37.037 12.91 0.00 39.79 4.18
517 518 9.155975 CTGGATTATCCTTTGGATTACTAATCG 57.844 37.037 12.91 0.00 39.79 3.34
518 519 8.951243 GCTGGATTATCCTTTGGATTACTAATC 58.049 37.037 12.91 7.59 39.79 1.75
519 520 8.673251 AGCTGGATTATCCTTTGGATTACTAAT 58.327 33.333 12.91 0.00 39.79 1.73
520 521 8.045720 AGCTGGATTATCCTTTGGATTACTAA 57.954 34.615 12.91 0.00 39.79 2.24
521 522 7.633018 AGCTGGATTATCCTTTGGATTACTA 57.367 36.000 12.91 0.00 39.79 1.82
522 523 6.521527 AGCTGGATTATCCTTTGGATTACT 57.478 37.500 12.91 0.00 39.79 2.24
523 524 7.337942 CCATAGCTGGATTATCCTTTGGATTAC 59.662 40.741 12.91 0.00 46.37 1.89
524 525 7.405292 CCATAGCTGGATTATCCTTTGGATTA 58.595 38.462 12.91 0.00 46.37 1.75
525 526 6.251471 CCATAGCTGGATTATCCTTTGGATT 58.749 40.000 12.91 0.00 46.37 3.01
526 527 5.809040 GCCATAGCTGGATTATCCTTTGGAT 60.809 44.000 12.91 4.42 46.37 3.41
527 528 4.507335 GCCATAGCTGGATTATCCTTTGGA 60.507 45.833 12.91 0.00 46.37 3.53
528 529 3.760684 GCCATAGCTGGATTATCCTTTGG 59.239 47.826 12.91 11.95 46.37 3.28
543 544 3.141398 TGCTATAGTTTGCAGCCATAGC 58.859 45.455 17.29 17.29 42.76 2.97
544 545 5.059161 TCTTGCTATAGTTTGCAGCCATAG 58.941 41.667 0.84 0.00 40.46 2.23
545 546 5.034852 TCTTGCTATAGTTTGCAGCCATA 57.965 39.130 0.84 0.00 40.46 2.74
546 547 3.889815 TCTTGCTATAGTTTGCAGCCAT 58.110 40.909 0.84 0.00 40.46 4.40
547 548 3.348647 TCTTGCTATAGTTTGCAGCCA 57.651 42.857 0.84 0.00 40.46 4.75
548 549 4.907879 ATTCTTGCTATAGTTTGCAGCC 57.092 40.909 0.84 0.00 40.46 4.85
549 550 7.020914 AGTTATTCTTGCTATAGTTTGCAGC 57.979 36.000 0.84 0.00 40.46 5.25
659 660 4.586884 ACTGAGCACAATTCACATCTGAT 58.413 39.130 0.00 0.00 0.00 2.90
667 668 2.224018 GGGCAAAACTGAGCACAATTCA 60.224 45.455 0.00 0.00 33.42 2.57
714 718 1.112916 TGGAGACGGCAGAGTTCACA 61.113 55.000 0.00 0.00 0.00 3.58
779 783 8.370940 CAGTCTAAATAGAATTGGCCATCTCTA 58.629 37.037 20.83 20.83 33.47 2.43
832 851 0.892358 ACACCCGCAACGTCTCTCTA 60.892 55.000 0.00 0.00 0.00 2.43
839 858 0.177141 ATATAGCACACCCGCAACGT 59.823 50.000 0.00 0.00 0.00 3.99
890 958 1.134877 CACCGTCATGCTCTCTGTCAT 60.135 52.381 0.00 0.00 0.00 3.06
993 1102 1.005215 CTTGGGGAAGACATGGAGCTT 59.995 52.381 0.00 0.00 0.00 3.74
1099 1209 0.896019 CGGTGTGTGAGAGACCCTCT 60.896 60.000 0.00 0.00 44.28 3.69
1106 1216 0.038159 GGTTCCTCGGTGTGTGAGAG 60.038 60.000 0.00 0.00 35.43 3.20
1151 1261 3.244249 CCTCGATTCTTACCCCATTCTCC 60.244 52.174 0.00 0.00 0.00 3.71
1281 1391 5.335426 GCTCTTCTTGCAGTTCATTCATCAA 60.335 40.000 0.00 0.00 0.00 2.57
1694 1831 8.339714 AGTTGCATTTCATTGATCAAAAGTTTG 58.660 29.630 13.09 5.94 39.48 2.93
1832 1970 1.164041 AAACACGCAAGAGAACCCCG 61.164 55.000 0.00 0.00 43.62 5.73
1930 2071 9.528489 AATTCTAACCTTAATTGTTTGGCTCTA 57.472 29.630 0.00 0.00 0.00 2.43
2095 2238 9.218440 CTCAATGTAATGCCCTTAAAAATGTTT 57.782 29.630 0.00 0.00 0.00 2.83
2179 2333 2.221299 CCTGGGTTTGAGTCCCCGA 61.221 63.158 0.00 0.00 44.44 5.14
2180 2334 2.351276 CCTGGGTTTGAGTCCCCG 59.649 66.667 0.00 0.00 44.44 5.73
2198 2352 4.639171 GCCACAAAACCACGCGGG 62.639 66.667 12.47 6.05 44.81 6.13
2227 2381 0.901114 TGTCCTAGCGGTTACCAGCA 60.901 55.000 17.30 5.89 35.48 4.41
2297 2451 0.590984 CGCGTGTGCAAACATTCACA 60.591 50.000 8.00 0.00 42.97 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.