Multiple sequence alignment - TraesCS5A01G030800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G030800 chr5A 100.000 4531 0 0 1 4531 28107647 28103117 0.000000e+00 8368.0
1 TraesCS5A01G030800 chr5A 93.816 663 29 1 3881 4531 73830800 73830138 0.000000e+00 987.0
2 TraesCS5A01G030800 chr5A 83.858 985 155 4 2549 3531 572839786 572840768 0.000000e+00 935.0
3 TraesCS5A01G030800 chr5A 78.987 533 73 23 179 697 459716717 459717224 1.220000e-85 327.0
4 TraesCS5A01G030800 chr5A 76.993 552 76 36 255 769 643371862 643371325 7.470000e-68 268.0
5 TraesCS5A01G030800 chr5A 90.566 53 3 2 3825 3876 7109633 7109684 8.130000e-08 69.4
6 TraesCS5A01G030800 chr5A 97.561 41 0 1 3831 3871 45001836 45001875 8.130000e-08 69.4
7 TraesCS5A01G030800 chr5D 94.356 3083 127 17 769 3833 40094519 40091466 0.000000e+00 4686.0
8 TraesCS5A01G030800 chr5D 84.663 978 146 4 2556 3531 453815615 453816590 0.000000e+00 972.0
9 TraesCS5A01G030800 chr5B 93.702 1302 58 17 2380 3670 33627533 33628821 0.000000e+00 1929.0
10 TraesCS5A01G030800 chr5B 92.042 754 40 10 799 1535 33625489 33626239 0.000000e+00 1042.0
11 TraesCS5A01G030800 chr5B 94.470 651 36 0 3881 4531 623146816 623146166 0.000000e+00 1003.0
12 TraesCS5A01G030800 chr5B 94.163 651 38 0 3881 4531 626811518 626810868 0.000000e+00 992.0
13 TraesCS5A01G030800 chr5B 84.065 979 150 5 2556 3531 554513846 554514821 0.000000e+00 939.0
14 TraesCS5A01G030800 chr5B 91.832 453 32 2 1321 1772 29509876 29510324 1.070000e-175 627.0
15 TraesCS5A01G030800 chr5B 87.097 527 46 13 1448 1968 33626458 33626968 1.090000e-160 577.0
16 TraesCS5A01G030800 chr5B 93.956 182 9 2 1817 1997 29509871 29509691 1.610000e-69 274.0
17 TraesCS5A01G030800 chr5B 87.218 133 8 4 3702 3833 33628816 33628940 4.720000e-30 143.0
18 TraesCS5A01G030800 chr5B 89.815 108 6 3 1541 1645 33626336 33626441 2.840000e-27 134.0
19 TraesCS5A01G030800 chr7A 93.967 663 28 1 3881 4531 503416508 503415846 0.000000e+00 992.0
20 TraesCS5A01G030800 chr7A 93.665 663 29 2 3881 4531 261882388 261883049 0.000000e+00 979.0
21 TraesCS5A01G030800 chr7A 87.154 615 57 18 15 609 636388530 636389142 0.000000e+00 678.0
22 TraesCS5A01G030800 chr7A 86.829 615 58 18 15 609 636282016 636282627 0.000000e+00 665.0
23 TraesCS5A01G030800 chr7A 86.688 616 56 23 15 609 636455527 636456137 0.000000e+00 660.0
24 TraesCS5A01G030800 chr7A 86.667 615 59 18 15 609 636536978 636537589 0.000000e+00 660.0
25 TraesCS5A01G030800 chr2A 93.976 664 27 2 3881 4531 75592234 75592897 0.000000e+00 992.0
26 TraesCS5A01G030800 chr2A 93.514 663 30 2 3881 4531 757539920 757539259 0.000000e+00 974.0
27 TraesCS5A01G030800 chr2A 84.667 300 25 8 474 770 548324405 548324124 3.450000e-71 279.0
28 TraesCS5A01G030800 chr2A 97.500 40 0 1 3832 3871 68814224 68814262 2.930000e-07 67.6
29 TraesCS5A01G030800 chr2A 93.478 46 1 2 3832 3876 551450356 551450312 2.930000e-07 67.6
30 TraesCS5A01G030800 chr4A 93.514 663 30 2 3881 4531 673777612 673778273 0.000000e+00 974.0
31 TraesCS5A01G030800 chr4A 95.455 44 0 2 3832 3875 640248421 640248462 8.130000e-08 69.4
32 TraesCS5A01G030800 chr1B 93.363 663 32 2 3881 4531 55543441 55542779 0.000000e+00 970.0
33 TraesCS5A01G030800 chr1B 89.621 713 63 6 1047 1756 13591128 13591832 0.000000e+00 896.0
34 TraesCS5A01G030800 chr7D 92.609 663 37 1 3881 4531 384062727 384063389 0.000000e+00 942.0
35 TraesCS5A01G030800 chr7B 92.459 663 38 1 3881 4531 40345783 40345121 0.000000e+00 937.0
36 TraesCS5A01G030800 chr2B 92.459 663 38 6 3881 4531 144032875 144032213 0.000000e+00 937.0
37 TraesCS5A01G030800 chr2D 87.143 770 67 18 15 770 19047816 19048567 0.000000e+00 845.0
38 TraesCS5A01G030800 chr2D 86.563 774 71 19 15 770 116830447 116831205 0.000000e+00 822.0
39 TraesCS5A01G030800 chrUn 86.788 772 68 19 15 770 374514331 374515084 0.000000e+00 830.0
40 TraesCS5A01G030800 chr6D 86.528 772 72 18 15 770 39089601 39088846 0.000000e+00 821.0
41 TraesCS5A01G030800 chr3B 89.392 641 64 4 3891 4531 10220877 10220241 0.000000e+00 804.0
42 TraesCS5A01G030800 chr3B 90.654 214 8 6 558 770 800143071 800142869 1.610000e-69 274.0
43 TraesCS5A01G030800 chr3B 88.793 232 5 8 551 781 16676165 16676376 9.660000e-67 265.0
44 TraesCS5A01G030800 chr3B 88.372 215 9 8 556 769 740886393 740886194 1.260000e-60 244.0
45 TraesCS5A01G030800 chr3D 88.839 663 39 17 3881 4531 1904146 1904785 0.000000e+00 782.0
46 TraesCS5A01G030800 chr3D 95.238 42 2 0 3824 3865 362072417 362072376 2.930000e-07 67.6
47 TraesCS5A01G030800 chr4B 85.783 626 65 13 156 770 6616231 6615619 3.820000e-180 641.0
48 TraesCS5A01G030800 chr6B 91.935 124 9 1 1321 1443 262138476 262138353 6.030000e-39 172.0
49 TraesCS5A01G030800 chr6B 95.238 105 5 0 1817 1921 351784052 351783948 2.800000e-37 167.0
50 TraesCS5A01G030800 chr6B 90.164 122 11 1 1323 1443 351784059 351784180 1.690000e-34 158.0
51 TraesCS5A01G030800 chr6A 95.556 45 0 2 3831 3875 198073602 198073644 2.260000e-08 71.3
52 TraesCS5A01G030800 chr3A 97.500 40 0 1 3832 3871 54200982 54200944 2.930000e-07 67.6
53 TraesCS5A01G030800 chr3A 97.500 40 0 1 3832 3871 743977132 743977170 2.930000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G030800 chr5A 28103117 28107647 4530 True 8368 8368 100.0000 1 4531 1 chr5A.!!$R1 4530
1 TraesCS5A01G030800 chr5A 73830138 73830800 662 True 987 987 93.8160 3881 4531 1 chr5A.!!$R2 650
2 TraesCS5A01G030800 chr5A 572839786 572840768 982 False 935 935 83.8580 2549 3531 1 chr5A.!!$F4 982
3 TraesCS5A01G030800 chr5A 459716717 459717224 507 False 327 327 78.9870 179 697 1 chr5A.!!$F3 518
4 TraesCS5A01G030800 chr5A 643371325 643371862 537 True 268 268 76.9930 255 769 1 chr5A.!!$R3 514
5 TraesCS5A01G030800 chr5D 40091466 40094519 3053 True 4686 4686 94.3560 769 3833 1 chr5D.!!$R1 3064
6 TraesCS5A01G030800 chr5D 453815615 453816590 975 False 972 972 84.6630 2556 3531 1 chr5D.!!$F1 975
7 TraesCS5A01G030800 chr5B 623146166 623146816 650 True 1003 1003 94.4700 3881 4531 1 chr5B.!!$R2 650
8 TraesCS5A01G030800 chr5B 626810868 626811518 650 True 992 992 94.1630 3881 4531 1 chr5B.!!$R3 650
9 TraesCS5A01G030800 chr5B 554513846 554514821 975 False 939 939 84.0650 2556 3531 1 chr5B.!!$F2 975
10 TraesCS5A01G030800 chr5B 33625489 33628940 3451 False 765 1929 89.9748 799 3833 5 chr5B.!!$F3 3034
11 TraesCS5A01G030800 chr7A 503415846 503416508 662 True 992 992 93.9670 3881 4531 1 chr7A.!!$R1 650
12 TraesCS5A01G030800 chr7A 261882388 261883049 661 False 979 979 93.6650 3881 4531 1 chr7A.!!$F1 650
13 TraesCS5A01G030800 chr7A 636388530 636389142 612 False 678 678 87.1540 15 609 1 chr7A.!!$F3 594
14 TraesCS5A01G030800 chr7A 636282016 636282627 611 False 665 665 86.8290 15 609 1 chr7A.!!$F2 594
15 TraesCS5A01G030800 chr7A 636455527 636456137 610 False 660 660 86.6880 15 609 1 chr7A.!!$F4 594
16 TraesCS5A01G030800 chr7A 636536978 636537589 611 False 660 660 86.6670 15 609 1 chr7A.!!$F5 594
17 TraesCS5A01G030800 chr2A 75592234 75592897 663 False 992 992 93.9760 3881 4531 1 chr2A.!!$F2 650
18 TraesCS5A01G030800 chr2A 757539259 757539920 661 True 974 974 93.5140 3881 4531 1 chr2A.!!$R3 650
19 TraesCS5A01G030800 chr4A 673777612 673778273 661 False 974 974 93.5140 3881 4531 1 chr4A.!!$F2 650
20 TraesCS5A01G030800 chr1B 55542779 55543441 662 True 970 970 93.3630 3881 4531 1 chr1B.!!$R1 650
21 TraesCS5A01G030800 chr1B 13591128 13591832 704 False 896 896 89.6210 1047 1756 1 chr1B.!!$F1 709
22 TraesCS5A01G030800 chr7D 384062727 384063389 662 False 942 942 92.6090 3881 4531 1 chr7D.!!$F1 650
23 TraesCS5A01G030800 chr7B 40345121 40345783 662 True 937 937 92.4590 3881 4531 1 chr7B.!!$R1 650
24 TraesCS5A01G030800 chr2B 144032213 144032875 662 True 937 937 92.4590 3881 4531 1 chr2B.!!$R1 650
25 TraesCS5A01G030800 chr2D 19047816 19048567 751 False 845 845 87.1430 15 770 1 chr2D.!!$F1 755
26 TraesCS5A01G030800 chr2D 116830447 116831205 758 False 822 822 86.5630 15 770 1 chr2D.!!$F2 755
27 TraesCS5A01G030800 chrUn 374514331 374515084 753 False 830 830 86.7880 15 770 1 chrUn.!!$F1 755
28 TraesCS5A01G030800 chr6D 39088846 39089601 755 True 821 821 86.5280 15 770 1 chr6D.!!$R1 755
29 TraesCS5A01G030800 chr3B 10220241 10220877 636 True 804 804 89.3920 3891 4531 1 chr3B.!!$R1 640
30 TraesCS5A01G030800 chr3D 1904146 1904785 639 False 782 782 88.8390 3881 4531 1 chr3D.!!$F1 650
31 TraesCS5A01G030800 chr4B 6615619 6616231 612 True 641 641 85.7830 156 770 1 chr4B.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 863 0.320374 TGCCCTCGTCAACTAGTTGG 59.680 55.0 30.35 18.09 40.78 3.77 F
1305 1402 0.111061 ACTCCCATTGCTTGCTGTGA 59.889 50.0 0.00 0.00 0.00 3.58 F
2642 3210 0.448990 CCGTGTGCATGATTGGTGAG 59.551 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2624 3192 0.448990 CCTCACCAATCATGCACACG 59.551 55.0 0.0 0.0 0.0 4.49 R
2747 3315 0.758734 CTGCTCCGATTCCCATACCA 59.241 55.0 0.0 0.0 0.0 3.25 R
4128 4723 0.178921 AGGAGGAGGTTGCTGTCTGA 60.179 55.0 0.0 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.015736 ACAGCGCTCAAAGATAGGTG 57.984 50.000 7.13 0.00 36.52 4.00
59 60 9.080097 GATAGGTGTTATGTACAGAGGTAGATT 57.920 37.037 0.33 0.00 37.45 2.40
231 246 1.141645 TGTGAATGTACGCCGAACAC 58.858 50.000 0.00 0.00 0.00 3.32
246 261 4.965762 GCCGAACACTTTTTAACTACACAC 59.034 41.667 0.00 0.00 0.00 3.82
548 586 9.872721 TTAAACGAAAAGGGTTTAAATGAAAGT 57.127 25.926 7.24 0.00 43.20 2.66
574 628 8.763049 AAAGAGACAGAAAAAGGAAACAAAAG 57.237 30.769 0.00 0.00 0.00 2.27
576 630 6.437477 AGAGACAGAAAAAGGAAACAAAAGGT 59.563 34.615 0.00 0.00 0.00 3.50
577 631 7.614192 AGAGACAGAAAAAGGAAACAAAAGGTA 59.386 33.333 0.00 0.00 0.00 3.08
666 743 1.686587 GAAGGTTCCCAAAACCAGGTG 59.313 52.381 9.45 0.00 42.69 4.00
777 856 1.112113 TAGGATCTGCCCTCGTCAAC 58.888 55.000 0.00 0.00 37.74 3.18
784 863 0.320374 TGCCCTCGTCAACTAGTTGG 59.680 55.000 30.35 18.09 40.78 3.77
785 864 0.606604 GCCCTCGTCAACTAGTTGGA 59.393 55.000 30.35 20.82 40.78 3.53
787 866 1.616865 CCCTCGTCAACTAGTTGGACA 59.383 52.381 30.35 12.82 40.78 4.02
788 867 2.233922 CCCTCGTCAACTAGTTGGACAT 59.766 50.000 30.35 0.00 40.78 3.06
790 869 3.193691 CCTCGTCAACTAGTTGGACATCT 59.806 47.826 30.35 0.00 40.78 2.90
793 872 3.676324 CGTCAACTAGTTGGACATCTCCC 60.676 52.174 30.35 10.08 40.78 4.30
794 873 3.260884 GTCAACTAGTTGGACATCTCCCA 59.739 47.826 30.35 8.70 40.78 4.37
797 876 1.486726 CTAGTTGGACATCTCCCACCC 59.513 57.143 0.00 0.00 33.35 4.61
878 960 1.516161 GTATTCCCGGGCCGATAAAC 58.484 55.000 30.79 14.66 0.00 2.01
1122 1213 2.387757 GACCTCAATCTCTCCTCTGCT 58.612 52.381 0.00 0.00 0.00 4.24
1167 1260 1.707427 AGCCACTGAGGAATTTGACCT 59.293 47.619 0.00 0.00 41.22 3.85
1290 1387 8.504815 GTTACTTTCCTCTGTGATTTTAACTCC 58.495 37.037 0.00 0.00 0.00 3.85
1305 1402 0.111061 ACTCCCATTGCTTGCTGTGA 59.889 50.000 0.00 0.00 0.00 3.58
1364 1462 4.666253 TGCAGGCCAAGGGTGAGC 62.666 66.667 5.01 0.00 0.00 4.26
1443 1542 2.086869 CAGTAGCAAGGGTGTGATTGG 58.913 52.381 0.00 0.00 0.00 3.16
1551 1741 8.067751 TCGATTACTCCCTTCATATGAATAGG 57.932 38.462 18.26 19.90 33.01 2.57
1576 1766 8.293867 GGTTGCTTGATTTGTGTAGTTGTAATA 58.706 33.333 0.00 0.00 0.00 0.98
1749 2158 5.305644 TCAGCTTATCTGACCCTAAGGAATC 59.694 44.000 0.00 0.00 46.34 2.52
1913 2322 5.812642 ACTAGCCGTATGTGAAGAATCAAAG 59.187 40.000 0.00 0.00 37.30 2.77
1954 2363 4.351874 ACAAACTTAGGCACAAGAGCTA 57.648 40.909 5.94 0.00 34.17 3.32
1990 2482 8.168626 AGTAATACGCGTGAATATGCAAATATG 58.831 33.333 24.59 0.00 38.79 1.78
1994 2486 5.007626 ACGCGTGAATATGCAAATATGAAGT 59.992 36.000 12.93 0.00 38.79 3.01
2027 2519 8.674263 TTAAAAATTTGCTGTCATCCATTTGT 57.326 26.923 0.00 0.00 0.00 2.83
2032 2524 3.076621 TGCTGTCATCCATTTGTGAGTC 58.923 45.455 0.00 0.00 0.00 3.36
2189 2696 5.511202 CCATTTAAATCCATACACATGCCCC 60.511 44.000 0.00 0.00 0.00 5.80
2215 2722 0.540830 TGGTGGGGGAAAATTGGACG 60.541 55.000 0.00 0.00 0.00 4.79
2286 2802 8.780846 TTACCTGCTTTCGAATTGACTAAATA 57.219 30.769 0.00 0.00 0.00 1.40
2314 2834 2.827921 TCACCTTCCTCGGGTAAACTAC 59.172 50.000 0.00 0.00 35.00 2.73
2334 2857 3.464828 ACCCAGTCTTCCCACATTATCT 58.535 45.455 0.00 0.00 0.00 1.98
2431 2998 4.959596 ATGAATGCTGCAGTTCTGTTAG 57.040 40.909 16.64 2.64 0.00 2.34
2499 3067 6.706270 AGGATGAGTTTGCACTTATTATACCG 59.294 38.462 0.00 0.00 29.42 4.02
2546 3114 6.705863 AAATGCCTGACTGATTATCCTTTC 57.294 37.500 0.00 0.00 0.00 2.62
2552 3120 5.751028 CCTGACTGATTATCCTTTCGTTCTC 59.249 44.000 0.00 0.00 0.00 2.87
2624 3192 3.054065 AGGAGATGACTTTGGATCCAACC 60.054 47.826 27.04 20.33 35.46 3.77
2642 3210 0.448990 CCGTGTGCATGATTGGTGAG 59.551 55.000 0.00 0.00 0.00 3.51
2747 3315 6.410540 CCCTATTGCTGAGAACTCTTTTACT 58.589 40.000 3.51 0.00 0.00 2.24
2772 3340 1.358046 GGAATCGGAGCAGCAATGC 59.642 57.895 0.00 0.00 0.00 3.56
2798 3366 0.178992 TCAGGCCAGTTGTTGAAGGG 60.179 55.000 5.01 0.00 0.00 3.95
3127 3695 2.605823 CCGACGAGGAATACATCTGCTC 60.606 54.545 0.00 0.00 45.00 4.26
3350 3918 2.265739 GAGGAGTGCATGCGGACA 59.734 61.111 14.09 0.00 35.57 4.02
3590 4158 2.052237 CGTGCGTGTCCAGTTTGC 60.052 61.111 0.00 0.00 0.00 3.68
3610 4181 5.337219 TGCTTTGTCGTGTAATTAGTGTG 57.663 39.130 0.00 0.00 0.00 3.82
3616 4187 4.084952 TGTCGTGTAATTAGTGTGTTTCGC 60.085 41.667 0.00 0.00 0.00 4.70
3617 4188 3.429543 TCGTGTAATTAGTGTGTTTCGCC 59.570 43.478 0.00 0.00 0.00 5.54
3618 4189 3.184783 CGTGTAATTAGTGTGTTTCGCCA 59.815 43.478 0.00 0.00 0.00 5.69
3619 4190 4.142988 CGTGTAATTAGTGTGTTTCGCCAT 60.143 41.667 0.00 0.00 0.00 4.40
3620 4191 5.321516 GTGTAATTAGTGTGTTTCGCCATC 58.678 41.667 0.00 0.00 0.00 3.51
3621 4192 4.393680 TGTAATTAGTGTGTTTCGCCATCC 59.606 41.667 0.00 0.00 0.00 3.51
3622 4193 1.816074 TTAGTGTGTTTCGCCATCCC 58.184 50.000 0.00 0.00 0.00 3.85
3623 4194 0.390603 TAGTGTGTTTCGCCATCCCG 60.391 55.000 0.00 0.00 0.00 5.14
3624 4195 1.964373 GTGTGTTTCGCCATCCCGT 60.964 57.895 0.00 0.00 0.00 5.28
3625 4196 1.963855 TGTGTTTCGCCATCCCGTG 60.964 57.895 0.00 0.00 0.00 4.94
3654 4249 6.471233 TGTATCATACTGGGAAGACTGAAG 57.529 41.667 0.00 0.00 0.00 3.02
3666 4261 4.496360 GAAGACTGAAGTGTACCCTTAGC 58.504 47.826 0.00 0.00 0.00 3.09
3675 4270 4.386711 AGTGTACCCTTAGCTGTTGTTTC 58.613 43.478 0.00 0.00 0.00 2.78
3680 4275 3.222603 CCCTTAGCTGTTGTTTCTTGGT 58.777 45.455 0.00 0.00 0.00 3.67
3690 4285 1.177401 GTTTCTTGGTCCATCTGCCC 58.823 55.000 0.00 0.00 0.00 5.36
3730 4325 2.027385 GCTCCTGGGTTTTGATCATCC 58.973 52.381 0.00 0.00 0.00 3.51
3775 4370 6.513806 TGTGTGCTGCTGTTATTCATTTAT 57.486 33.333 0.00 0.00 0.00 1.40
3776 4371 6.923012 TGTGTGCTGCTGTTATTCATTTATT 58.077 32.000 0.00 0.00 0.00 1.40
3777 4372 7.377398 TGTGTGCTGCTGTTATTCATTTATTT 58.623 30.769 0.00 0.00 0.00 1.40
3778 4373 8.518702 TGTGTGCTGCTGTTATTCATTTATTTA 58.481 29.630 0.00 0.00 0.00 1.40
3779 4374 8.798153 GTGTGCTGCTGTTATTCATTTATTTAC 58.202 33.333 0.00 0.00 0.00 2.01
3780 4375 8.739039 TGTGCTGCTGTTATTCATTTATTTACT 58.261 29.630 0.00 0.00 0.00 2.24
3783 4378 9.370126 GCTGCTGTTATTCATTTATTTACTACG 57.630 33.333 0.00 0.00 0.00 3.51
3825 4420 5.849510 TGTTTTACTGATTCGACTCTGGAA 58.150 37.500 13.00 8.55 0.00 3.53
3826 4421 6.464222 TGTTTTACTGATTCGACTCTGGAAT 58.536 36.000 13.00 0.00 36.85 3.01
3827 4422 6.590292 TGTTTTACTGATTCGACTCTGGAATC 59.410 38.462 13.00 7.40 46.31 2.52
3834 4429 5.837437 GATTCGACTCTGGAATCACATACT 58.163 41.667 9.07 0.00 45.73 2.12
3835 4430 4.902443 TCGACTCTGGAATCACATACTC 57.098 45.455 0.00 0.00 0.00 2.59
3836 4431 3.632604 TCGACTCTGGAATCACATACTCC 59.367 47.826 0.00 0.00 0.00 3.85
3837 4432 3.243569 CGACTCTGGAATCACATACTCCC 60.244 52.174 0.00 0.00 0.00 4.30
3838 4433 3.964031 GACTCTGGAATCACATACTCCCT 59.036 47.826 0.00 0.00 0.00 4.20
3839 4434 3.964031 ACTCTGGAATCACATACTCCCTC 59.036 47.826 0.00 0.00 0.00 4.30
3840 4435 3.309296 TCTGGAATCACATACTCCCTCC 58.691 50.000 0.00 0.00 0.00 4.30
3841 4436 2.036475 CTGGAATCACATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
3842 4437 2.040178 GGAATCACATACTCCCTCCGT 58.960 52.381 0.00 0.00 0.00 4.69
3843 4438 2.036089 GGAATCACATACTCCCTCCGTC 59.964 54.545 0.00 0.00 0.00 4.79
3844 4439 2.757894 ATCACATACTCCCTCCGTCT 57.242 50.000 0.00 0.00 0.00 4.18
3845 4440 2.054232 TCACATACTCCCTCCGTCTC 57.946 55.000 0.00 0.00 0.00 3.36
3846 4441 1.283905 TCACATACTCCCTCCGTCTCA 59.716 52.381 0.00 0.00 0.00 3.27
3847 4442 2.100197 CACATACTCCCTCCGTCTCAA 58.900 52.381 0.00 0.00 0.00 3.02
3848 4443 2.496070 CACATACTCCCTCCGTCTCAAA 59.504 50.000 0.00 0.00 0.00 2.69
3849 4444 3.056107 CACATACTCCCTCCGTCTCAAAA 60.056 47.826 0.00 0.00 0.00 2.44
3850 4445 3.775316 ACATACTCCCTCCGTCTCAAAAT 59.225 43.478 0.00 0.00 0.00 1.82
3851 4446 4.960469 ACATACTCCCTCCGTCTCAAAATA 59.040 41.667 0.00 0.00 0.00 1.40
3852 4447 5.602978 ACATACTCCCTCCGTCTCAAAATAT 59.397 40.000 0.00 0.00 0.00 1.28
3853 4448 6.781014 ACATACTCCCTCCGTCTCAAAATATA 59.219 38.462 0.00 0.00 0.00 0.86
3854 4449 7.289317 ACATACTCCCTCCGTCTCAAAATATAA 59.711 37.037 0.00 0.00 0.00 0.98
3855 4450 6.163135 ACTCCCTCCGTCTCAAAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
3856 4451 5.897824 ACTCCCTCCGTCTCAAAATATAAGA 59.102 40.000 0.00 0.00 0.00 2.10
3857 4452 6.383147 ACTCCCTCCGTCTCAAAATATAAGAA 59.617 38.462 0.00 0.00 0.00 2.52
3858 4453 6.579865 TCCCTCCGTCTCAAAATATAAGAAC 58.420 40.000 0.00 0.00 0.00 3.01
3859 4454 5.462398 CCCTCCGTCTCAAAATATAAGAACG 59.538 44.000 0.00 0.00 0.00 3.95
3860 4455 6.040878 CCTCCGTCTCAAAATATAAGAACGT 58.959 40.000 0.00 0.00 0.00 3.99
3861 4456 6.534079 CCTCCGTCTCAAAATATAAGAACGTT 59.466 38.462 0.00 0.00 0.00 3.99
3862 4457 7.064253 CCTCCGTCTCAAAATATAAGAACGTTT 59.936 37.037 0.46 0.00 0.00 3.60
3863 4458 8.314143 TCCGTCTCAAAATATAAGAACGTTTT 57.686 30.769 0.46 0.00 0.00 2.43
3864 4459 8.776470 TCCGTCTCAAAATATAAGAACGTTTTT 58.224 29.630 9.22 9.22 0.00 1.94
3878 4473 7.373778 AGAACGTTTTTAATCACATACTCCC 57.626 36.000 0.46 0.00 0.00 4.30
3879 4474 7.166167 AGAACGTTTTTAATCACATACTCCCT 58.834 34.615 0.46 0.00 0.00 4.20
3883 4478 5.687166 TTTTAATCACATACTCCCTCCGT 57.313 39.130 0.00 0.00 0.00 4.69
3886 4481 6.989155 TTAATCACATACTCCCTCCGTTAT 57.011 37.500 0.00 0.00 0.00 1.89
3907 4502 9.056005 CGTTATTCCTATCCAAAATGATGAAGA 57.944 33.333 0.00 0.00 0.00 2.87
3916 4511 4.946157 CCAAAATGATGAAGAGGTGCTAGT 59.054 41.667 0.00 0.00 0.00 2.57
3921 4516 1.729586 TGAAGAGGTGCTAGTTGGGT 58.270 50.000 0.00 0.00 0.00 4.51
3954 4549 5.242795 ACCACTCACTTAAGCCTAACATT 57.757 39.130 1.29 0.00 0.00 2.71
3999 4594 3.672295 GAAGCCCCAGCCGAGTCAG 62.672 68.421 0.00 0.00 41.25 3.51
4036 4631 0.670546 CAATCCGGTCAGACGCACTT 60.671 55.000 0.00 0.00 0.00 3.16
4091 4686 6.983906 TCAGATCATATTGAGGCTTCTACA 57.016 37.500 0.00 0.00 0.00 2.74
4289 4884 1.205655 CAAGACGATGCCCTCAGAAGA 59.794 52.381 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.764885 AATTTAATCAGTCGCTGGTGC 57.235 42.857 6.95 0.00 31.51 5.01
1 2 5.727791 GCTGTAATTTAATCAGTCGCTGGTG 60.728 44.000 6.95 0.00 31.51 4.17
2 3 4.332819 GCTGTAATTTAATCAGTCGCTGGT 59.667 41.667 6.95 0.00 31.51 4.00
3 4 4.550831 CGCTGTAATTTAATCAGTCGCTGG 60.551 45.833 6.95 0.00 31.51 4.85
4 5 4.508971 CGCTGTAATTTAATCAGTCGCTG 58.491 43.478 1.02 1.02 0.00 5.18
6 7 3.001330 AGCGCTGTAATTTAATCAGTCGC 59.999 43.478 10.39 17.96 45.17 5.19
7 8 4.267690 TGAGCGCTGTAATTTAATCAGTCG 59.732 41.667 18.48 0.00 34.57 4.18
8 9 5.718649 TGAGCGCTGTAATTTAATCAGTC 57.281 39.130 18.48 0.00 0.00 3.51
9 10 6.371548 TCTTTGAGCGCTGTAATTTAATCAGT 59.628 34.615 18.48 0.00 0.00 3.41
10 11 6.775088 TCTTTGAGCGCTGTAATTTAATCAG 58.225 36.000 18.48 2.54 0.00 2.90
11 12 6.735678 TCTTTGAGCGCTGTAATTTAATCA 57.264 33.333 18.48 0.00 0.00 2.57
12 13 8.012241 CCTATCTTTGAGCGCTGTAATTTAATC 58.988 37.037 18.48 0.00 0.00 1.75
13 14 7.499232 ACCTATCTTTGAGCGCTGTAATTTAAT 59.501 33.333 18.48 0.21 0.00 1.40
40 41 7.261829 AGACGAATCTACCTCTGTACATAAC 57.738 40.000 0.00 0.00 31.46 1.89
59 60 8.615878 TTCTTGAAGGAATGATTAAAAGACGA 57.384 30.769 0.00 0.00 0.00 4.20
133 144 8.499403 TCATTCGTGGTCAATAATTATTCACA 57.501 30.769 20.09 12.46 0.00 3.58
219 231 4.457433 AGTTAAAAAGTGTTCGGCGTAC 57.543 40.909 9.87 9.87 0.00 3.67
432 456 9.775854 TGTTCATGGATTTAAAATTGTGTTCAT 57.224 25.926 0.00 0.00 0.00 2.57
533 571 9.063615 TCTGTCTCTTTACTTTCATTTAAACCC 57.936 33.333 0.00 0.00 0.00 4.11
548 586 9.855021 CTTTTGTTTCCTTTTTCTGTCTCTTTA 57.145 29.630 0.00 0.00 0.00 1.85
554 598 8.766000 TTTACCTTTTGTTTCCTTTTTCTGTC 57.234 30.769 0.00 0.00 0.00 3.51
625 701 4.601084 TCTAGTAGGTTCTCTGAACCAGG 58.399 47.826 25.39 13.22 42.69 4.45
777 856 1.486726 GGGTGGGAGATGTCCAACTAG 59.513 57.143 15.76 0.00 45.52 2.57
784 863 0.257039 ATGCAAGGGTGGGAGATGTC 59.743 55.000 0.00 0.00 0.00 3.06
785 864 1.212935 GTATGCAAGGGTGGGAGATGT 59.787 52.381 0.00 0.00 0.00 3.06
787 866 1.212935 GTGTATGCAAGGGTGGGAGAT 59.787 52.381 0.00 0.00 0.00 2.75
788 867 0.618458 GTGTATGCAAGGGTGGGAGA 59.382 55.000 0.00 0.00 0.00 3.71
790 869 1.136961 TGGTGTATGCAAGGGTGGGA 61.137 55.000 0.00 0.00 0.00 4.37
793 872 1.812571 GACTTGGTGTATGCAAGGGTG 59.187 52.381 0.00 0.00 0.00 4.61
794 873 1.271926 GGACTTGGTGTATGCAAGGGT 60.272 52.381 0.00 0.00 0.00 4.34
797 876 4.572389 GTCTATGGACTTGGTGTATGCAAG 59.428 45.833 1.27 0.00 39.24 4.01
1142 1235 0.036732 AATTCCTCAGTGGCTTCGCA 59.963 50.000 0.00 0.00 35.26 5.10
1151 1244 2.154462 CGCAAGGTCAAATTCCTCAGT 58.846 47.619 0.00 0.00 33.76 3.41
1156 1249 0.598065 ACTGCGCAAGGTCAAATTCC 59.402 50.000 13.05 0.00 38.28 3.01
1257 1353 3.876914 CACAGAGGAAAGTAACTGCAACA 59.123 43.478 0.00 0.00 34.25 3.33
1290 1387 0.800683 CGCATCACAGCAAGCAATGG 60.801 55.000 0.00 0.00 0.00 3.16
1364 1462 3.909312 CGTATCGGAGCTCGCAAG 58.091 61.111 7.83 0.00 39.05 4.01
1443 1542 4.895224 ACGTTTTTCTCTTTCCCAAGAC 57.105 40.909 0.00 0.00 33.80 3.01
1551 1741 9.329913 CTATTACAACTACACAAATCAAGCAAC 57.670 33.333 0.00 0.00 0.00 4.17
1749 2158 7.871973 TCAAAATCAAGTGTAATTGGAACATGG 59.128 33.333 0.00 0.00 39.30 3.66
1954 2363 8.638685 ATTCACGCGTATTACTTACTAACATT 57.361 30.769 13.44 0.00 0.00 2.71
1990 2482 9.196552 ACAGCAAATTTTTAAGCAGATAACTTC 57.803 29.630 1.62 0.00 0.00 3.01
1994 2486 9.357652 GATGACAGCAAATTTTTAAGCAGATAA 57.642 29.630 1.62 0.00 0.00 1.75
2027 2519 5.272283 AGTTAAACCTTGTTCTCGACTCA 57.728 39.130 0.00 0.00 0.00 3.41
2032 2524 4.813296 AGCAAGTTAAACCTTGTTCTCG 57.187 40.909 7.44 0.00 43.03 4.04
2189 2696 2.008242 TTTTCCCCCACCAACTGATG 57.992 50.000 0.00 0.00 0.00 3.07
2286 2802 0.969894 CCGAGGAAGGTGAGACAGTT 59.030 55.000 0.00 0.00 0.00 3.16
2314 2834 3.813443 CAGATAATGTGGGAAGACTGGG 58.187 50.000 0.00 0.00 0.00 4.45
2334 2857 8.521170 ACACTAACTATAGTAGATTCACTGCA 57.479 34.615 5.65 0.00 40.44 4.41
2461 3028 6.571150 GCAAACTCATCCTTCACTGCTAAATT 60.571 38.462 0.00 0.00 0.00 1.82
2467 3034 1.881973 TGCAAACTCATCCTTCACTGC 59.118 47.619 0.00 0.00 0.00 4.40
2499 3067 3.553096 CCGACAGGCAGAATGATAGGTAC 60.553 52.174 0.00 0.00 39.69 3.34
2546 3114 6.423905 TCAAAACCTCATGACTAAAGAGAACG 59.576 38.462 0.00 0.00 0.00 3.95
2552 3120 8.352201 TCAAACATCAAAACCTCATGACTAAAG 58.648 33.333 0.00 0.00 0.00 1.85
2624 3192 0.448990 CCTCACCAATCATGCACACG 59.551 55.000 0.00 0.00 0.00 4.49
2642 3210 1.341531 CCTCCATAGTCACCGACATCC 59.658 57.143 0.00 0.00 34.60 3.51
2711 3279 2.368875 AGCAATAGGGGTATCAAGGACG 59.631 50.000 0.00 0.00 0.00 4.79
2747 3315 0.758734 CTGCTCCGATTCCCATACCA 59.241 55.000 0.00 0.00 0.00 3.25
2798 3366 3.696548 GGAGAAGGAAACCCATGTTCATC 59.303 47.826 0.00 0.00 32.15 2.92
3127 3695 3.765257 ATCTCGGCCTCCTCCAGGG 62.765 68.421 0.00 0.00 43.70 4.45
3550 4118 3.937706 CTGCTTCTGAATCCTCGAAACAT 59.062 43.478 0.00 0.00 0.00 2.71
3558 4126 1.023513 GCACGCTGCTTCTGAATCCT 61.024 55.000 0.00 0.00 40.96 3.24
3590 4158 6.568601 CGAAACACACTAATTACACGACAAAG 59.431 38.462 0.00 0.00 0.00 2.77
3617 4188 1.134936 TGATACAACGTCCACGGGATG 60.135 52.381 3.81 9.76 43.80 3.51
3618 4189 1.187974 TGATACAACGTCCACGGGAT 58.812 50.000 3.81 0.00 44.95 3.85
3619 4190 1.187974 ATGATACAACGTCCACGGGA 58.812 50.000 3.81 0.00 44.95 5.14
3620 4191 2.100252 AGTATGATACAACGTCCACGGG 59.900 50.000 5.28 0.00 44.95 5.28
3621 4192 3.113322 CAGTATGATACAACGTCCACGG 58.887 50.000 5.28 0.00 41.13 4.94
3622 4193 3.113322 CCAGTATGATACAACGTCCACG 58.887 50.000 5.28 0.00 39.69 4.94
3623 4194 3.131577 TCCCAGTATGATACAACGTCCAC 59.868 47.826 5.28 0.00 39.69 4.02
3624 4195 3.367321 TCCCAGTATGATACAACGTCCA 58.633 45.455 5.28 0.00 39.69 4.02
3625 4196 4.098960 TCTTCCCAGTATGATACAACGTCC 59.901 45.833 5.28 0.00 39.69 4.79
3626 4197 5.041940 GTCTTCCCAGTATGATACAACGTC 58.958 45.833 5.28 0.00 39.69 4.34
3627 4198 4.710375 AGTCTTCCCAGTATGATACAACGT 59.290 41.667 5.28 0.00 39.69 3.99
3628 4199 5.043903 CAGTCTTCCCAGTATGATACAACG 58.956 45.833 5.28 0.00 39.69 4.10
3629 4200 6.222038 TCAGTCTTCCCAGTATGATACAAC 57.778 41.667 5.28 0.00 39.69 3.32
3630 4201 6.440647 ACTTCAGTCTTCCCAGTATGATACAA 59.559 38.462 5.28 0.00 39.69 2.41
3631 4202 5.958380 ACTTCAGTCTTCCCAGTATGATACA 59.042 40.000 5.28 0.00 39.69 2.29
3632 4203 6.127310 ACACTTCAGTCTTCCCAGTATGATAC 60.127 42.308 0.00 0.00 39.69 2.24
3633 4204 5.958380 ACACTTCAGTCTTCCCAGTATGATA 59.042 40.000 0.00 0.00 39.69 2.15
3634 4205 4.780021 ACACTTCAGTCTTCCCAGTATGAT 59.220 41.667 0.00 0.00 39.69 2.45
3654 4249 4.386711 AGAAACAACAGCTAAGGGTACAC 58.613 43.478 0.00 0.00 0.00 2.90
3666 4261 3.304928 GCAGATGGACCAAGAAACAACAG 60.305 47.826 0.00 0.00 0.00 3.16
3680 4275 4.505566 GCTTACATAGAATGGGCAGATGGA 60.506 45.833 0.00 0.00 33.60 3.41
3690 4285 5.178996 GGAGCATCACAGCTTACATAGAATG 59.821 44.000 0.00 0.00 46.75 2.67
3730 4325 0.671781 CTCCACCGACCAAGCAGAAG 60.672 60.000 0.00 0.00 0.00 2.85
3781 4376 9.895138 AAAACAAATATTACTAGGATGGTACGT 57.105 29.630 0.00 0.00 29.18 3.57
3815 4410 3.243569 GGGAGTATGTGATTCCAGAGTCG 60.244 52.174 0.00 0.00 35.60 4.18
3816 4411 3.964031 AGGGAGTATGTGATTCCAGAGTC 59.036 47.826 0.00 0.00 35.60 3.36
3825 4420 2.091830 TGAGACGGAGGGAGTATGTGAT 60.092 50.000 0.00 0.00 0.00 3.06
3826 4421 1.283905 TGAGACGGAGGGAGTATGTGA 59.716 52.381 0.00 0.00 0.00 3.58
3827 4422 1.763968 TGAGACGGAGGGAGTATGTG 58.236 55.000 0.00 0.00 0.00 3.21
3828 4423 2.526888 TTGAGACGGAGGGAGTATGT 57.473 50.000 0.00 0.00 0.00 2.29
3829 4424 3.887621 TTTTGAGACGGAGGGAGTATG 57.112 47.619 0.00 0.00 0.00 2.39
3830 4425 7.728981 TCTTATATTTTGAGACGGAGGGAGTAT 59.271 37.037 0.00 0.00 0.00 2.12
3831 4426 7.064866 TCTTATATTTTGAGACGGAGGGAGTA 58.935 38.462 0.00 0.00 0.00 2.59
3832 4427 5.897824 TCTTATATTTTGAGACGGAGGGAGT 59.102 40.000 0.00 0.00 0.00 3.85
3833 4428 6.406692 TCTTATATTTTGAGACGGAGGGAG 57.593 41.667 0.00 0.00 0.00 4.30
3834 4429 6.579865 GTTCTTATATTTTGAGACGGAGGGA 58.420 40.000 0.00 0.00 0.00 4.20
3835 4430 5.462398 CGTTCTTATATTTTGAGACGGAGGG 59.538 44.000 0.00 0.00 0.00 4.30
3836 4431 6.040878 ACGTTCTTATATTTTGAGACGGAGG 58.959 40.000 0.00 0.00 0.00 4.30
3837 4432 7.521509 AACGTTCTTATATTTTGAGACGGAG 57.478 36.000 0.00 0.00 0.00 4.63
3838 4433 7.894376 AAACGTTCTTATATTTTGAGACGGA 57.106 32.000 0.00 0.00 0.00 4.69
3839 4434 8.944212 AAAAACGTTCTTATATTTTGAGACGG 57.056 30.769 0.00 0.00 0.00 4.79
3852 4447 8.938906 GGGAGTATGTGATTAAAAACGTTCTTA 58.061 33.333 0.00 0.00 0.00 2.10
3853 4448 7.664318 AGGGAGTATGTGATTAAAAACGTTCTT 59.336 33.333 0.00 0.00 0.00 2.52
3854 4449 7.166167 AGGGAGTATGTGATTAAAAACGTTCT 58.834 34.615 0.00 0.00 0.00 3.01
3855 4450 7.373778 AGGGAGTATGTGATTAAAAACGTTC 57.626 36.000 0.00 0.00 0.00 3.95
3856 4451 6.373495 GGAGGGAGTATGTGATTAAAAACGTT 59.627 38.462 0.00 0.00 0.00 3.99
3857 4452 5.878669 GGAGGGAGTATGTGATTAAAAACGT 59.121 40.000 0.00 0.00 0.00 3.99
3858 4453 5.006358 CGGAGGGAGTATGTGATTAAAAACG 59.994 44.000 0.00 0.00 0.00 3.60
3859 4454 5.878669 ACGGAGGGAGTATGTGATTAAAAAC 59.121 40.000 0.00 0.00 0.00 2.43
3860 4455 6.057321 ACGGAGGGAGTATGTGATTAAAAA 57.943 37.500 0.00 0.00 0.00 1.94
3861 4456 5.687166 ACGGAGGGAGTATGTGATTAAAA 57.313 39.130 0.00 0.00 0.00 1.52
3862 4457 5.687166 AACGGAGGGAGTATGTGATTAAA 57.313 39.130 0.00 0.00 0.00 1.52
3863 4458 6.989155 ATAACGGAGGGAGTATGTGATTAA 57.011 37.500 0.00 0.00 0.00 1.40
3864 4459 6.014840 GGAATAACGGAGGGAGTATGTGATTA 60.015 42.308 0.00 0.00 0.00 1.75
3865 4460 5.221661 GGAATAACGGAGGGAGTATGTGATT 60.222 44.000 0.00 0.00 0.00 2.57
3866 4461 4.283722 GGAATAACGGAGGGAGTATGTGAT 59.716 45.833 0.00 0.00 0.00 3.06
3867 4462 3.640029 GGAATAACGGAGGGAGTATGTGA 59.360 47.826 0.00 0.00 0.00 3.58
3868 4463 3.641906 AGGAATAACGGAGGGAGTATGTG 59.358 47.826 0.00 0.00 0.00 3.21
3869 4464 3.924922 AGGAATAACGGAGGGAGTATGT 58.075 45.455 0.00 0.00 0.00 2.29
3870 4465 5.127356 GGATAGGAATAACGGAGGGAGTATG 59.873 48.000 0.00 0.00 0.00 2.39
3871 4466 5.222484 TGGATAGGAATAACGGAGGGAGTAT 60.222 44.000 0.00 0.00 0.00 2.12
3872 4467 4.106825 TGGATAGGAATAACGGAGGGAGTA 59.893 45.833 0.00 0.00 0.00 2.59
3873 4468 3.116862 TGGATAGGAATAACGGAGGGAGT 60.117 47.826 0.00 0.00 0.00 3.85
3874 4469 3.507411 TGGATAGGAATAACGGAGGGAG 58.493 50.000 0.00 0.00 0.00 4.30
3875 4470 3.623466 TGGATAGGAATAACGGAGGGA 57.377 47.619 0.00 0.00 0.00 4.20
3876 4471 4.699925 TTTGGATAGGAATAACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
3877 4472 6.296026 TCATTTTGGATAGGAATAACGGAGG 58.704 40.000 0.00 0.00 0.00 4.30
3878 4473 7.661437 TCATCATTTTGGATAGGAATAACGGAG 59.339 37.037 0.00 0.00 0.00 4.63
3879 4474 7.513856 TCATCATTTTGGATAGGAATAACGGA 58.486 34.615 0.00 0.00 0.00 4.69
3883 4478 9.578576 CCTCTTCATCATTTTGGATAGGAATAA 57.421 33.333 0.00 0.00 0.00 1.40
3886 4481 6.830324 CACCTCTTCATCATTTTGGATAGGAA 59.170 38.462 0.00 0.00 0.00 3.36
3907 4502 1.900486 GTAGTGACCCAACTAGCACCT 59.100 52.381 0.00 0.00 33.35 4.00
3921 4516 2.404559 AGTGAGTGGTTTGGGTAGTGA 58.595 47.619 0.00 0.00 0.00 3.41
3996 4591 1.075525 CCCCAGACCCGGTATCTGA 60.076 63.158 26.78 0.00 45.46 3.27
3999 4594 2.766651 TGCCCCAGACCCGGTATC 60.767 66.667 0.00 0.00 0.00 2.24
4091 4686 4.730487 GCAGAGTGGCCAGACAAT 57.270 55.556 5.11 0.00 0.00 2.71
4128 4723 0.178921 AGGAGGAGGTTGCTGTCTGA 60.179 55.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.