Multiple sequence alignment - TraesCS5A01G030000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G030000 chr5A 100.000 5525 0 0 1 5525 26130321 26135845 0.000000e+00 10203.0
1 TraesCS5A01G030000 chr5A 79.768 776 129 20 3398 4157 571682413 571683176 6.300000e-149 538.0
2 TraesCS5A01G030000 chr5D 90.665 3053 191 42 2460 5472 37135798 37138796 0.000000e+00 3973.0
3 TraesCS5A01G030000 chr5D 92.036 1670 83 16 567 2223 37134081 37135713 0.000000e+00 2302.0
4 TraesCS5A01G030000 chr5D 92.254 710 54 1 1 710 37133373 37134081 0.000000e+00 1005.0
5 TraesCS5A01G030000 chr5D 76.819 962 177 35 3223 4157 452678460 452679402 2.970000e-137 499.0
6 TraesCS5A01G030000 chr5D 95.745 141 6 0 2327 2467 37135712 37135852 1.550000e-55 228.0
7 TraesCS5A01G030000 chr5B 92.879 2289 124 9 2472 4739 27804885 27807155 0.000000e+00 3288.0
8 TraesCS5A01G030000 chr5B 92.436 1441 67 18 726 2136 27803311 27804739 0.000000e+00 2019.0
9 TraesCS5A01G030000 chr5B 77.128 975 182 33 3223 4174 553179987 553180943 1.360000e-145 527.0
10 TraesCS5A01G030000 chr5B 87.819 353 30 9 4879 5224 27807781 27808127 8.620000e-108 401.0
11 TraesCS5A01G030000 chr5B 91.133 203 18 0 508 710 273895306 273895104 5.450000e-70 276.0
12 TraesCS5A01G030000 chr5B 95.035 141 7 0 2327 2467 27804787 27804927 7.200000e-54 222.0
13 TraesCS5A01G030000 chr5B 88.722 133 14 1 1 133 27800379 27800510 1.590000e-35 161.0
14 TraesCS5A01G030000 chr5B 83.851 161 14 4 4737 4885 27807185 27807345 5.770000e-30 143.0
15 TraesCS5A01G030000 chr6B 81.798 456 56 19 258 711 522517955 522518385 1.890000e-94 357.0
16 TraesCS5A01G030000 chr6B 97.297 37 0 1 175 211 522517791 522517826 1.660000e-05 62.1
17 TraesCS5A01G030000 chr2D 90.435 230 19 3 483 711 70392310 70392083 3.240000e-77 300.0
18 TraesCS5A01G030000 chr2B 90.179 224 21 1 487 710 794997623 794997401 1.950000e-74 291.0
19 TraesCS5A01G030000 chr1B 88.889 225 24 1 487 711 32780348 32780571 5.450000e-70 276.0
20 TraesCS5A01G030000 chr6A 88.444 225 24 2 499 722 596631288 596631511 2.540000e-68 270.0
21 TraesCS5A01G030000 chr6A 96.667 120 2 2 2221 2339 537040707 537040825 1.210000e-46 198.0
22 TraesCS5A01G030000 chr6A 92.913 127 7 2 2219 2343 402233076 402232950 3.400000e-42 183.0
23 TraesCS5A01G030000 chr1D 87.983 233 23 3 483 712 18607144 18606914 2.540000e-68 270.0
24 TraesCS5A01G030000 chr7D 88.288 222 23 3 492 712 43791231 43791012 4.240000e-66 263.0
25 TraesCS5A01G030000 chr4A 96.667 120 4 0 2218 2337 416231391 416231510 3.380000e-47 200.0
26 TraesCS5A01G030000 chr2A 99.091 110 1 0 2220 2329 78333817 78333708 1.210000e-46 198.0
27 TraesCS5A01G030000 chr7A 99.065 107 1 0 2222 2328 133053229 133053335 5.650000e-45 193.0
28 TraesCS5A01G030000 chr7A 95.763 118 5 0 2215 2332 650030907 650030790 2.030000e-44 191.0
29 TraesCS5A01G030000 chr4D 95.763 118 5 0 2213 2330 483110252 483110135 2.030000e-44 191.0
30 TraesCS5A01G030000 chr4D 95.041 121 5 1 2221 2340 415293007 415293127 7.310000e-44 189.0
31 TraesCS5A01G030000 chr3A 95.082 122 3 3 2216 2334 488771322 488771201 7.310000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G030000 chr5A 26130321 26135845 5524 False 10203.00 10203 100.000000 1 5525 1 chr5A.!!$F1 5524
1 TraesCS5A01G030000 chr5A 571682413 571683176 763 False 538.00 538 79.768000 3398 4157 1 chr5A.!!$F2 759
2 TraesCS5A01G030000 chr5D 37133373 37138796 5423 False 1877.00 3973 92.675000 1 5472 4 chr5D.!!$F2 5471
3 TraesCS5A01G030000 chr5D 452678460 452679402 942 False 499.00 499 76.819000 3223 4157 1 chr5D.!!$F1 934
4 TraesCS5A01G030000 chr5B 27800379 27808127 7748 False 1039.00 3288 90.123667 1 5224 6 chr5B.!!$F2 5223
5 TraesCS5A01G030000 chr5B 553179987 553180943 956 False 527.00 527 77.128000 3223 4174 1 chr5B.!!$F1 951
6 TraesCS5A01G030000 chr6B 522517791 522518385 594 False 209.55 357 89.547500 175 711 2 chr6B.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 320 0.606944 GTTGGCCACGTACAATGGGA 60.607 55.000 3.88 0.0 37.73 4.37 F
921 3546 0.991893 AAAACCCTAGCCCCGCCTAT 60.992 55.000 0.00 0.0 0.00 2.57 F
969 3598 1.005394 TTTCTCCGACGGTTCCTGC 60.005 57.895 14.79 0.0 0.00 4.85 F
2307 4965 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.0 0.00 4.18 F
2387 5045 0.879765 ACATGCTCTTTCTGTGCTGC 59.120 50.000 0.00 0.0 36.27 5.25 F
2391 5049 1.338105 TGCTCTTTCTGTGCTGCGTAT 60.338 47.619 0.00 0.0 36.27 3.06 F
4140 6825 1.467342 GACGGCAAAATCCCACACTAC 59.533 52.381 0.00 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1307 3944 0.748005 CCAACCAATACAGCCCGGAG 60.748 60.000 0.73 0.00 0.00 4.63 R
2299 4957 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19 R
2312 4970 2.024273 AGAGAATACTCCCTCCGTTCCA 60.024 50.000 0.00 0.00 43.53 3.53 R
4140 6825 0.320771 CAACACCAGGAGGGAGTTCG 60.321 60.000 0.00 0.00 45.93 3.95 R
4271 6959 1.203174 TCATGTCTGGACCTCCTGTCA 60.203 52.381 0.00 1.73 46.38 3.58 R
4272 6960 1.480137 CTCATGTCTGGACCTCCTGTC 59.520 57.143 0.00 0.00 43.67 3.51 R
5288 8505 0.040351 TCAAATTCAATGGGGCGGGA 59.960 50.000 0.00 0.00 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.079809 GGTGTGTTATATTTGCAGTAAGTTTGT 58.920 33.333 0.00 0.00 0.00 2.83
154 155 2.203070 CGATGGGGAGGGCTTTCG 60.203 66.667 0.00 0.00 0.00 3.46
242 320 0.606944 GTTGGCCACGTACAATGGGA 60.607 55.000 3.88 0.00 37.73 4.37
265 347 1.849116 CCCTTGCTATGGCCCTCAT 59.151 57.895 0.00 0.00 39.78 2.90
340 1296 2.607038 GCAAAACCCGTTGTCTGGATTC 60.607 50.000 0.00 0.00 0.00 2.52
358 1314 6.585416 TGGATTCAGATCGAATGAGAATTGA 58.415 36.000 14.65 0.00 44.65 2.57
445 1427 6.037500 CGAGATGCTTTTGATAGATGTTTGGA 59.962 38.462 0.00 0.00 0.00 3.53
473 1455 2.301009 AGGAAGGAAATGACGTACGGTT 59.699 45.455 21.06 8.53 0.00 4.44
654 3053 7.178573 TGTATTGGTGGGATAAAAATCAGTGA 58.821 34.615 0.00 0.00 0.00 3.41
712 3245 9.126151 CAACTCAGACATTAGGAGTAGAGATTA 57.874 37.037 0.00 0.00 40.80 1.75
713 3246 8.918202 ACTCAGACATTAGGAGTAGAGATTAG 57.082 38.462 0.00 0.00 39.95 1.73
715 3248 7.235079 TCAGACATTAGGAGTAGAGATTAGGG 58.765 42.308 0.00 0.00 0.00 3.53
724 3257 5.083821 GAGTAGAGATTAGGGGCAGAGATT 58.916 45.833 0.00 0.00 0.00 2.40
821 3443 1.348064 AACGAACTCCATGACTCCCA 58.652 50.000 0.00 0.00 0.00 4.37
829 3451 1.108776 CCATGACTCCCATTTGCCAG 58.891 55.000 0.00 0.00 31.94 4.85
919 3544 1.617233 TAAAACCCTAGCCCCGCCT 60.617 57.895 0.00 0.00 0.00 5.52
921 3546 0.991893 AAAACCCTAGCCCCGCCTAT 60.992 55.000 0.00 0.00 0.00 2.57
955 3584 4.436998 CTCTCGCCGCCGGTTTCT 62.437 66.667 4.45 0.00 34.56 2.52
969 3598 1.005394 TTTCTCCGACGGTTCCTGC 60.005 57.895 14.79 0.00 0.00 4.85
970 3599 1.469335 TTTCTCCGACGGTTCCTGCT 61.469 55.000 14.79 0.00 0.00 4.24
972 3601 2.599281 TCCGACGGTTCCTGCTCA 60.599 61.111 14.79 0.00 0.00 4.26
983 3612 2.743928 CTGCTCAAGGGTCGGTGC 60.744 66.667 0.00 0.00 0.00 5.01
986 3615 2.750350 CTCAAGGGTCGGTGCCTT 59.250 61.111 0.00 0.00 0.00 4.35
988 3617 1.228124 TCAAGGGTCGGTGCCTTTG 60.228 57.895 9.09 9.09 44.11 2.77
1264 3896 1.313772 CTCCGACCTCATCATCGACT 58.686 55.000 0.00 0.00 40.86 4.18
1268 3900 2.188524 CGACCTCATCATCGACTTGTG 58.811 52.381 0.00 0.00 40.86 3.33
1304 3941 2.289072 CCTCCAGTGAGACATGTTCGTT 60.289 50.000 0.00 0.00 41.42 3.85
1307 3944 1.195448 CAGTGAGACATGTTCGTTGGC 59.805 52.381 0.00 0.00 0.00 4.52
1332 3970 1.136891 GGCTGTATTGGTTGGAATGGC 59.863 52.381 0.00 0.00 0.00 4.40
1358 3996 4.478203 TGGTCTGAAATGGTTGGATTGAA 58.522 39.130 0.00 0.00 0.00 2.69
1368 4006 2.500910 GGTTGGATTGAATGATTGGGCA 59.499 45.455 0.00 0.00 0.00 5.36
1384 4022 3.770040 CACAGGGATGCGACGGGA 61.770 66.667 0.00 0.00 0.00 5.14
1490 4128 2.686915 CCCCTGATTGCTCTTGCTTTAG 59.313 50.000 0.00 0.00 40.48 1.85
1494 4132 4.164294 CTGATTGCTCTTGCTTTAGTTGC 58.836 43.478 0.00 0.00 40.48 4.17
1511 4149 5.391312 AGTTGCTCTGTTGTTTTGAGTTT 57.609 34.783 0.00 0.00 0.00 2.66
1684 4329 9.934190 GAGTTGTGTTTTTACTCGGTTTATTTA 57.066 29.630 0.00 0.00 0.00 1.40
1806 4459 8.887264 TTTGTATGGAACTGGTAATGGTATTT 57.113 30.769 0.00 0.00 0.00 1.40
1807 4460 7.873719 TGTATGGAACTGGTAATGGTATTTG 57.126 36.000 0.00 0.00 0.00 2.32
1808 4461 6.831353 TGTATGGAACTGGTAATGGTATTTGG 59.169 38.462 0.00 0.00 0.00 3.28
1809 4462 5.263872 TGGAACTGGTAATGGTATTTGGT 57.736 39.130 0.00 0.00 0.00 3.67
1810 4463 6.390048 TGGAACTGGTAATGGTATTTGGTA 57.610 37.500 0.00 0.00 0.00 3.25
1811 4464 6.419791 TGGAACTGGTAATGGTATTTGGTAG 58.580 40.000 0.00 0.00 0.00 3.18
1812 4465 6.215841 TGGAACTGGTAATGGTATTTGGTAGA 59.784 38.462 0.00 0.00 0.00 2.59
1841 4497 9.158233 GTAGTAGTACCATGTTTTGAGCATTTA 57.842 33.333 0.00 0.00 0.00 1.40
1873 4529 1.258982 CTTCTCATGGATTACGTGCGC 59.741 52.381 0.00 0.00 36.01 6.09
1892 4548 2.287009 CGCGAGCATCAGTGTACATCTA 60.287 50.000 0.00 0.00 33.17 1.98
1895 4551 4.023963 GCGAGCATCAGTGTACATCTACTA 60.024 45.833 0.00 0.00 33.17 1.82
1912 4568 7.335171 ACATCTACTACGTATGTTGTGACAGTA 59.665 37.037 11.76 3.31 39.58 2.74
2154 4811 2.038952 TGTGATTCACTGCTTGCCTACT 59.961 45.455 17.26 0.00 35.11 2.57
2155 4812 2.417933 GTGATTCACTGCTTGCCTACTG 59.582 50.000 9.59 0.00 0.00 2.74
2226 4884 3.454371 ACATCCGCTGTGTTATACTCC 57.546 47.619 0.00 0.00 36.48 3.85
2227 4885 2.102588 ACATCCGCTGTGTTATACTCCC 59.897 50.000 0.00 0.00 36.48 4.30
2228 4886 2.154567 TCCGCTGTGTTATACTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
2229 4887 2.029623 TCCGCTGTGTTATACTCCCTC 58.970 52.381 0.00 0.00 0.00 4.30
2230 4888 1.068741 CCGCTGTGTTATACTCCCTCC 59.931 57.143 0.00 0.00 0.00 4.30
2231 4889 1.269102 CGCTGTGTTATACTCCCTCCG 60.269 57.143 0.00 0.00 0.00 4.63
2232 4890 1.755380 GCTGTGTTATACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
2233 4891 2.167900 GCTGTGTTATACTCCCTCCGTT 59.832 50.000 0.00 0.00 0.00 4.44
2234 4892 3.737355 GCTGTGTTATACTCCCTCCGTTC 60.737 52.174 0.00 0.00 0.00 3.95
2235 4893 3.700038 CTGTGTTATACTCCCTCCGTTCT 59.300 47.826 0.00 0.00 0.00 3.01
2236 4894 3.446161 TGTGTTATACTCCCTCCGTTCTG 59.554 47.826 0.00 0.00 0.00 3.02
2237 4895 3.698040 GTGTTATACTCCCTCCGTTCTGA 59.302 47.826 0.00 0.00 0.00 3.27
2238 4896 4.159135 GTGTTATACTCCCTCCGTTCTGAA 59.841 45.833 0.00 0.00 0.00 3.02
2239 4897 4.960469 TGTTATACTCCCTCCGTTCTGAAT 59.040 41.667 0.00 0.00 0.00 2.57
2240 4898 5.424252 TGTTATACTCCCTCCGTTCTGAATT 59.576 40.000 0.00 0.00 0.00 2.17
2241 4899 6.608405 TGTTATACTCCCTCCGTTCTGAATTA 59.392 38.462 0.00 0.00 0.00 1.40
2242 4900 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2243 4901 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2244 4902 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
2245 4903 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2246 4904 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2247 4905 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2248 4906 3.612860 CCTCCGTTCTGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
2249 4907 2.991190 TCCGTTCTGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
2250 4908 2.734606 CCGTTCTGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
2251 4909 3.185594 CCGTTCTGAATTACTTGTCGCAA 59.814 43.478 0.00 0.00 0.00 4.85
2252 4910 4.386230 CGTTCTGAATTACTTGTCGCAAG 58.614 43.478 15.16 15.16 0.00 4.01
2253 4911 4.084537 CGTTCTGAATTACTTGTCGCAAGT 60.085 41.667 22.53 22.53 39.48 3.16
2254 4912 5.118050 CGTTCTGAATTACTTGTCGCAAGTA 59.882 40.000 20.95 20.95 39.48 2.24
2255 4913 6.183360 CGTTCTGAATTACTTGTCGCAAGTAT 60.183 38.462 23.59 14.96 33.27 2.12
2256 4914 6.647212 TCTGAATTACTTGTCGCAAGTATG 57.353 37.500 23.59 15.22 33.27 2.39
2257 4915 5.580691 TCTGAATTACTTGTCGCAAGTATGG 59.419 40.000 23.59 15.39 33.27 2.74
2258 4916 5.483811 TGAATTACTTGTCGCAAGTATGGA 58.516 37.500 23.59 14.66 33.27 3.41
2259 4917 6.112734 TGAATTACTTGTCGCAAGTATGGAT 58.887 36.000 23.59 15.77 33.27 3.41
2260 4918 5.991328 ATTACTTGTCGCAAGTATGGATG 57.009 39.130 23.59 2.90 33.27 3.51
2261 4919 3.334583 ACTTGTCGCAAGTATGGATGT 57.665 42.857 19.21 0.00 39.48 3.06
2262 4920 4.465632 ACTTGTCGCAAGTATGGATGTA 57.534 40.909 19.21 0.00 39.48 2.29
2263 4921 5.023533 ACTTGTCGCAAGTATGGATGTAT 57.976 39.130 19.21 0.00 39.48 2.29
2264 4922 5.050490 ACTTGTCGCAAGTATGGATGTATC 58.950 41.667 19.21 0.00 39.48 2.24
2265 4923 4.937201 TGTCGCAAGTATGGATGTATCT 57.063 40.909 0.00 0.00 39.48 1.98
2266 4924 6.040504 ACTTGTCGCAAGTATGGATGTATCTA 59.959 38.462 19.21 0.00 39.48 1.98
2267 4925 6.013842 TGTCGCAAGTATGGATGTATCTAG 57.986 41.667 0.00 0.00 39.48 2.43
2268 4926 5.768164 TGTCGCAAGTATGGATGTATCTAGA 59.232 40.000 0.00 0.00 39.48 2.43
2269 4927 6.434340 TGTCGCAAGTATGGATGTATCTAGAT 59.566 38.462 10.73 10.73 39.48 1.98
2270 4928 6.749578 GTCGCAAGTATGGATGTATCTAGATG 59.250 42.308 15.79 0.00 39.48 2.90
2271 4929 6.434340 TCGCAAGTATGGATGTATCTAGATGT 59.566 38.462 15.79 1.25 39.48 3.06
2272 4930 7.610305 TCGCAAGTATGGATGTATCTAGATGTA 59.390 37.037 15.79 4.44 39.48 2.29
2273 4931 8.409371 CGCAAGTATGGATGTATCTAGATGTAT 58.591 37.037 15.79 9.11 0.00 2.29
2300 4958 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
2301 4959 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
2302 4960 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
2303 4961 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2304 4962 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2305 4963 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2306 4964 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2307 4965 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2308 4966 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2309 4967 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2310 4968 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2311 4969 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2312 4970 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2313 4971 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2314 4972 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2315 4973 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2316 4974 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2317 4975 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2318 4976 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2319 4977 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
2320 4978 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2321 4979 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2322 4980 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2323 4981 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2324 4982 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2325 4983 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2386 5044 1.878088 ACACATGCTCTTTCTGTGCTG 59.122 47.619 0.00 0.00 43.13 4.41
2387 5045 0.879765 ACATGCTCTTTCTGTGCTGC 59.120 50.000 0.00 0.00 36.27 5.25
2391 5049 1.338105 TGCTCTTTCTGTGCTGCGTAT 60.338 47.619 0.00 0.00 36.27 3.06
2467 5125 5.350504 AATATGCTACTCTGTTGTGCTCT 57.649 39.130 0.00 0.00 0.00 4.09
2468 5126 6.471233 AATATGCTACTCTGTTGTGCTCTA 57.529 37.500 0.00 0.00 0.00 2.43
2469 5127 6.662865 ATATGCTACTCTGTTGTGCTCTAT 57.337 37.500 0.00 0.00 0.00 1.98
2470 5128 4.808414 TGCTACTCTGTTGTGCTCTATT 57.192 40.909 0.00 0.00 0.00 1.73
2471 5129 5.152623 TGCTACTCTGTTGTGCTCTATTT 57.847 39.130 0.00 0.00 0.00 1.40
2472 5130 6.280855 TGCTACTCTGTTGTGCTCTATTTA 57.719 37.500 0.00 0.00 0.00 1.40
2473 5131 6.100004 TGCTACTCTGTTGTGCTCTATTTAC 58.900 40.000 0.00 0.00 0.00 2.01
2474 5132 6.071334 TGCTACTCTGTTGTGCTCTATTTACT 60.071 38.462 0.00 0.00 0.00 2.24
2475 5133 6.254589 GCTACTCTGTTGTGCTCTATTTACTG 59.745 42.308 0.00 0.00 0.00 2.74
2476 5134 6.102897 ACTCTGTTGTGCTCTATTTACTGT 57.897 37.500 0.00 0.00 0.00 3.55
2477 5135 7.228314 ACTCTGTTGTGCTCTATTTACTGTA 57.772 36.000 0.00 0.00 0.00 2.74
2478 5136 7.841956 ACTCTGTTGTGCTCTATTTACTGTAT 58.158 34.615 0.00 0.00 0.00 2.29
2479 5137 8.967918 ACTCTGTTGTGCTCTATTTACTGTATA 58.032 33.333 0.00 0.00 0.00 1.47
2480 5138 9.973450 CTCTGTTGTGCTCTATTTACTGTATAT 57.027 33.333 0.00 0.00 0.00 0.86
2481 5139 9.967346 TCTGTTGTGCTCTATTTACTGTATATC 57.033 33.333 0.00 0.00 0.00 1.63
2482 5140 9.750125 CTGTTGTGCTCTATTTACTGTATATCA 57.250 33.333 0.00 0.00 0.00 2.15
2486 5144 9.914131 TGTGCTCTATTTACTGTATATCATGTC 57.086 33.333 0.00 0.00 0.00 3.06
2487 5145 9.360093 GTGCTCTATTTACTGTATATCATGTCC 57.640 37.037 0.00 0.00 0.00 4.02
2488 5146 9.314133 TGCTCTATTTACTGTATATCATGTCCT 57.686 33.333 0.00 0.00 0.00 3.85
2505 5163 8.023021 TCATGTCCTTAAATATGCTACTCTGT 57.977 34.615 0.00 0.00 0.00 3.41
2506 5164 8.486210 TCATGTCCTTAAATATGCTACTCTGTT 58.514 33.333 0.00 0.00 0.00 3.16
2507 5165 9.764363 CATGTCCTTAAATATGCTACTCTGTTA 57.236 33.333 0.00 0.00 0.00 2.41
2509 5167 9.764363 TGTCCTTAAATATGCTACTCTGTTATG 57.236 33.333 0.00 0.00 0.00 1.90
2510 5168 8.713271 GTCCTTAAATATGCTACTCTGTTATGC 58.287 37.037 0.00 0.00 0.00 3.14
2511 5169 7.878127 TCCTTAAATATGCTACTCTGTTATGCC 59.122 37.037 0.00 0.00 0.00 4.40
2512 5170 7.119846 CCTTAAATATGCTACTCTGTTATGCCC 59.880 40.741 0.00 0.00 0.00 5.36
2518 5176 3.433598 GCTACTCTGTTATGCCCAATCCA 60.434 47.826 0.00 0.00 0.00 3.41
2519 5177 3.959495 ACTCTGTTATGCCCAATCCAT 57.041 42.857 0.00 0.00 0.00 3.41
2642 5304 3.418995 TCGAGATCCCTTATTCTACCGG 58.581 50.000 0.00 0.00 0.00 5.28
2691 5353 7.865706 ATCATGTTCCTGTAGTAATTTGGTC 57.134 36.000 0.00 0.00 0.00 4.02
2713 5375 7.618117 TGGTCAACTCAAGGAATATCTACTACA 59.382 37.037 0.00 0.00 0.00 2.74
2742 5404 3.370840 AATGATTGCAGCTTGTCCCTA 57.629 42.857 0.00 0.00 0.00 3.53
2777 5439 2.358582 CAGTGTCCAGTTTTGTGCATGA 59.641 45.455 0.00 0.00 0.00 3.07
2929 5602 5.212532 TGTATTTGTGGCTGAAGCAAATT 57.787 34.783 4.43 0.00 44.36 1.82
3023 5696 3.397849 TGCTAGCATGATCTGTGATCC 57.602 47.619 14.93 0.00 0.00 3.36
3024 5697 2.288640 TGCTAGCATGATCTGTGATCCG 60.289 50.000 14.93 0.00 0.00 4.18
3093 5766 9.278734 GTTCTCTGCTACAAAAGTAAAATATGC 57.721 33.333 0.00 0.00 0.00 3.14
3142 5815 7.609760 TCATGATAGGTTTATGTGTTGACAC 57.390 36.000 7.31 7.31 46.59 3.67
3148 5822 5.656480 AGGTTTATGTGTTGACACCAAAAC 58.344 37.500 21.27 21.27 45.88 2.43
3189 5863 2.939103 GTTCTATTGCGGATTCTGCAGT 59.061 45.455 18.97 18.51 44.28 4.40
3190 5864 2.554142 TCTATTGCGGATTCTGCAGTG 58.446 47.619 21.82 14.87 44.28 3.66
3215 5889 9.730705 TGTTTTCTTGATCTGATGAGTCTTATT 57.269 29.630 0.00 0.00 0.00 1.40
3337 6011 7.360269 CCTTGTCCATTGTGATTAATTTGTTGC 60.360 37.037 0.00 0.00 0.00 4.17
3373 6051 6.097356 TGACTATGAAATGACGTCCTTGTAC 58.903 40.000 14.12 6.01 0.00 2.90
3494 6172 3.564225 AGGAAAAATGTCGAGTGGTGAAC 59.436 43.478 0.00 0.00 0.00 3.18
3498 6176 2.169832 ATGTCGAGTGGTGAACAAGG 57.830 50.000 0.00 0.00 0.00 3.61
3531 6212 8.311395 TCACCTGATATGGATACCAAGATATC 57.689 38.462 0.00 0.00 36.95 1.63
3846 6531 3.584406 TCTTCCCTTCATTCTCAAGCTCA 59.416 43.478 0.00 0.00 0.00 4.26
3901 6586 4.024556 CGATTGATAGGATGACAAAGCACC 60.025 45.833 0.00 0.00 0.00 5.01
3909 6594 1.600916 GACAAAGCACCGGGAAGCT 60.601 57.895 6.32 9.72 44.31 3.74
3994 6679 2.595386 CAAAGCCAAAGCCATACGAAC 58.405 47.619 0.00 0.00 41.25 3.95
4086 6771 3.695606 GGGCTGCCTGACGAGACA 61.696 66.667 19.68 0.00 0.00 3.41
4140 6825 1.467342 GACGGCAAAATCCCACACTAC 59.533 52.381 0.00 0.00 0.00 2.73
4271 6959 4.082517 CGACTCCGATGAACAGGATGATAT 60.083 45.833 0.00 0.00 37.53 1.63
4272 6960 5.144692 ACTCCGATGAACAGGATGATATG 57.855 43.478 0.00 0.00 39.69 1.78
4334 7022 2.668212 TTTCGACTTGGCCGCCAG 60.668 61.111 12.95 9.54 33.81 4.85
4492 7180 1.374758 CAGAAGCCCACCGTCAGTC 60.375 63.158 0.00 0.00 0.00 3.51
4493 7181 1.837051 AGAAGCCCACCGTCAGTCA 60.837 57.895 0.00 0.00 0.00 3.41
4521 7209 1.398390 GTCAGCGTGGATGGAAATGTC 59.602 52.381 0.00 0.00 0.00 3.06
4541 7229 1.127567 TAGTGCCAGTGTCCCAAGCT 61.128 55.000 0.00 0.00 0.00 3.74
4557 7245 3.573967 CCAAGCTTCCTAAACAACCACAT 59.426 43.478 0.00 0.00 0.00 3.21
4571 7262 2.086869 ACCACATATCACAGTTGCTGC 58.913 47.619 0.00 0.00 34.37 5.25
4572 7263 2.290514 ACCACATATCACAGTTGCTGCT 60.291 45.455 0.00 0.00 34.37 4.24
4573 7264 2.751259 CCACATATCACAGTTGCTGCTT 59.249 45.455 0.00 0.00 34.37 3.91
4585 7276 1.078143 GCTGCTTCCGGGAAGATGT 60.078 57.895 35.08 0.00 41.71 3.06
4590 7281 1.740718 GCTTCCGGGAAGATGTCTGTC 60.741 57.143 35.08 14.51 41.71 3.51
4604 7296 2.287547 TGTCTGTCGAATGCAAAAAGGC 60.288 45.455 0.00 0.00 0.00 4.35
4684 7377 3.386078 TGAATCTGCTCTGGTAGATGGAC 59.614 47.826 0.00 0.00 42.56 4.02
4686 7379 0.387202 CTGCTCTGGTAGATGGACGG 59.613 60.000 0.00 0.00 0.00 4.79
4689 7382 1.323412 CTCTGGTAGATGGACGGGAG 58.677 60.000 0.00 0.00 0.00 4.30
4941 8118 3.928375 GCGCATGGATTTTCACATTTTCT 59.072 39.130 0.30 0.00 0.00 2.52
4943 8120 4.201647 CGCATGGATTTTCACATTTTCTGC 60.202 41.667 0.00 0.00 0.00 4.26
4944 8121 4.093850 GCATGGATTTTCACATTTTCTGCC 59.906 41.667 0.00 0.00 0.00 4.85
4985 8165 1.774217 AGAAGACAACCTGCCCCCA 60.774 57.895 0.00 0.00 0.00 4.96
5000 8183 2.158914 GCCCCCATTCCATTCATTGAAC 60.159 50.000 0.15 0.00 0.00 3.18
5174 8365 6.564709 TTGTCATTCAAGTTTCATCTCAGG 57.435 37.500 0.00 0.00 0.00 3.86
5193 8384 4.783227 TCAGGCACCTCTCCTAATACTTTT 59.217 41.667 0.00 0.00 31.52 2.27
5224 8415 8.545229 TTCAAATGCATTTAATCGGTCATTTT 57.455 26.923 23.69 0.00 33.47 1.82
5226 8417 9.645059 TCAAATGCATTTAATCGGTCATTTTAA 57.355 25.926 23.69 0.00 33.47 1.52
5228 8419 7.678194 ATGCATTTAATCGGTCATTTTAACG 57.322 32.000 0.00 0.00 0.00 3.18
5229 8420 6.843208 TGCATTTAATCGGTCATTTTAACGA 58.157 32.000 0.00 0.00 39.85 3.85
5230 8421 6.964370 TGCATTTAATCGGTCATTTTAACGAG 59.036 34.615 0.00 0.00 38.85 4.18
5231 8422 6.413818 GCATTTAATCGGTCATTTTAACGAGG 59.586 38.462 0.00 0.00 38.85 4.63
5233 8424 1.352114 TCGGTCATTTTAACGAGGCG 58.648 50.000 0.00 0.00 0.00 5.52
5234 8425 0.372334 CGGTCATTTTAACGAGGCGG 59.628 55.000 0.00 0.00 0.00 6.13
5235 8426 0.098200 GGTCATTTTAACGAGGCGGC 59.902 55.000 0.00 0.00 0.00 6.53
5236 8427 0.800012 GTCATTTTAACGAGGCGGCA 59.200 50.000 13.08 0.00 0.00 5.69
5237 8428 0.800012 TCATTTTAACGAGGCGGCAC 59.200 50.000 13.08 3.38 0.00 5.01
5262 8479 4.813027 CCCATTGTTGTCATTTCCAAGAG 58.187 43.478 0.00 0.00 0.00 2.85
5266 8483 4.090761 TGTTGTCATTTCCAAGAGAGCT 57.909 40.909 0.00 0.00 0.00 4.09
5267 8484 3.817084 TGTTGTCATTTCCAAGAGAGCTG 59.183 43.478 0.00 0.00 0.00 4.24
5268 8485 2.430465 TGTCATTTCCAAGAGAGCTGC 58.570 47.619 0.00 0.00 0.00 5.25
5288 8505 1.985662 CCAATGGTGGCCATGCACT 60.986 57.895 9.72 0.00 44.40 4.40
5290 8507 1.683365 AATGGTGGCCATGCACTCC 60.683 57.895 9.72 4.43 44.40 3.85
5291 8508 3.667217 ATGGTGGCCATGCACTCCC 62.667 63.158 9.72 3.53 43.39 4.30
5318 8535 4.317488 CATTGAATTTGAACCCCAACAGG 58.683 43.478 0.00 0.00 33.85 4.00
5324 8541 2.520741 AACCCCAACAGGCCAACG 60.521 61.111 5.01 0.00 0.00 4.10
5325 8542 4.596585 ACCCCAACAGGCCAACGG 62.597 66.667 5.01 0.00 0.00 4.44
5354 8571 4.830765 TTCTCGCGCCCCCAATCG 62.831 66.667 0.00 0.00 0.00 3.34
5401 8618 1.986575 GCCGCTCTGCCTTCACATTC 61.987 60.000 0.00 0.00 0.00 2.67
5409 8626 1.142667 TGCCTTCACATTCCACACTCA 59.857 47.619 0.00 0.00 0.00 3.41
5424 8641 4.070009 CACACTCAAACCCCTACTTAACC 58.930 47.826 0.00 0.00 0.00 2.85
5432 8651 2.303890 ACCCCTACTTAACCAACCTTCG 59.696 50.000 0.00 0.00 0.00 3.79
5440 8659 1.426751 AACCAACCTTCGTCTACCCA 58.573 50.000 0.00 0.00 0.00 4.51
5443 8662 1.012486 CAACCTTCGTCTACCCACGC 61.012 60.000 0.00 0.00 39.74 5.34
5449 8668 0.607217 TCGTCTACCCACGCTCAGAA 60.607 55.000 0.00 0.00 39.74 3.02
5467 8686 0.034089 AATTCCTACCCACAGCAGCC 60.034 55.000 0.00 0.00 0.00 4.85
5472 8691 0.036732 CTACCCACAGCAGCCAGAAA 59.963 55.000 0.00 0.00 0.00 2.52
5473 8692 0.250727 TACCCACAGCAGCCAGAAAC 60.251 55.000 0.00 0.00 0.00 2.78
5474 8693 2.270986 CCCACAGCAGCCAGAAACC 61.271 63.158 0.00 0.00 0.00 3.27
5475 8694 1.228367 CCACAGCAGCCAGAAACCT 60.228 57.895 0.00 0.00 0.00 3.50
5476 8695 1.239968 CCACAGCAGCCAGAAACCTC 61.240 60.000 0.00 0.00 0.00 3.85
5477 8696 0.250640 CACAGCAGCCAGAAACCTCT 60.251 55.000 0.00 0.00 0.00 3.69
5478 8697 0.036022 ACAGCAGCCAGAAACCTCTC 59.964 55.000 0.00 0.00 0.00 3.20
5479 8698 0.035881 CAGCAGCCAGAAACCTCTCA 59.964 55.000 0.00 0.00 0.00 3.27
5480 8699 0.990374 AGCAGCCAGAAACCTCTCAT 59.010 50.000 0.00 0.00 0.00 2.90
5481 8700 1.065564 AGCAGCCAGAAACCTCTCATC 60.066 52.381 0.00 0.00 0.00 2.92
5482 8701 2.016096 GCAGCCAGAAACCTCTCATCC 61.016 57.143 0.00 0.00 0.00 3.51
5483 8702 1.280133 CAGCCAGAAACCTCTCATCCA 59.720 52.381 0.00 0.00 0.00 3.41
5484 8703 2.092538 CAGCCAGAAACCTCTCATCCAT 60.093 50.000 0.00 0.00 0.00 3.41
5485 8704 2.172293 AGCCAGAAACCTCTCATCCATC 59.828 50.000 0.00 0.00 0.00 3.51
5486 8705 2.747799 GCCAGAAACCTCTCATCCATCC 60.748 54.545 0.00 0.00 0.00 3.51
5487 8706 2.507058 CCAGAAACCTCTCATCCATCCA 59.493 50.000 0.00 0.00 0.00 3.41
5488 8707 3.433314 CCAGAAACCTCTCATCCATCCAG 60.433 52.174 0.00 0.00 0.00 3.86
5489 8708 2.172293 AGAAACCTCTCATCCATCCAGC 59.828 50.000 0.00 0.00 0.00 4.85
5490 8709 0.842635 AACCTCTCATCCATCCAGCC 59.157 55.000 0.00 0.00 0.00 4.85
5491 8710 0.326904 ACCTCTCATCCATCCAGCCA 60.327 55.000 0.00 0.00 0.00 4.75
5492 8711 1.065647 CCTCTCATCCATCCAGCCAT 58.934 55.000 0.00 0.00 0.00 4.40
5493 8712 1.271434 CCTCTCATCCATCCAGCCATG 60.271 57.143 0.00 0.00 0.00 3.66
5513 8732 3.462678 GGACTGGTCCTCGCTCCC 61.463 72.222 12.09 0.00 46.16 4.30
5514 8733 3.827898 GACTGGTCCTCGCTCCCG 61.828 72.222 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.753107 ACTTACTGCAAATATAACACACCC 57.247 37.500 0.00 0.00 0.00 4.61
66 67 6.633856 TGCAGTATACATGAGATTATGCGAT 58.366 36.000 5.50 0.00 33.96 4.58
68 69 6.898912 ATGCAGTATACATGAGATTATGCG 57.101 37.500 5.50 0.00 33.96 4.73
136 137 2.193248 GAAAGCCCTCCCCATCGG 59.807 66.667 0.00 0.00 0.00 4.18
137 138 2.203070 CGAAAGCCCTCCCCATCG 60.203 66.667 0.00 0.00 0.00 3.84
265 347 1.189524 CCCCACGAACTACCCAGACA 61.190 60.000 0.00 0.00 0.00 3.41
298 1254 2.046285 CCCTTCCAACCCATCACGC 61.046 63.158 0.00 0.00 0.00 5.34
367 1323 8.255111 ACCCTCTCAATTCTGATTTTTCTTTT 57.745 30.769 0.00 0.00 0.00 2.27
406 1362 1.000171 CATCTCGCATTCCCTCGATCA 60.000 52.381 0.00 0.00 33.98 2.92
445 1427 2.427506 GTCATTTCCTTCCTTCGCAGT 58.572 47.619 0.00 0.00 0.00 4.40
473 1455 9.959721 AGACTAAATCTCTAACTAAAATGGCAA 57.040 29.630 0.00 0.00 28.16 4.52
632 3031 5.658190 CCTCACTGATTTTTATCCCACCAAT 59.342 40.000 0.00 0.00 0.00 3.16
654 3053 5.196695 GCCTCATTTCAGTTAATCCTTCCT 58.803 41.667 0.00 0.00 0.00 3.36
712 3245 1.307691 AGCCAGAATCTCTGCCCCT 60.308 57.895 0.00 0.00 42.98 4.79
713 3246 1.153005 CAGCCAGAATCTCTGCCCC 60.153 63.158 0.00 0.00 42.98 5.80
715 3248 0.747283 CACCAGCCAGAATCTCTGCC 60.747 60.000 0.00 0.00 42.98 4.85
815 3437 0.779997 AAGGTCTGGCAAATGGGAGT 59.220 50.000 0.00 0.00 0.00 3.85
821 3443 3.075134 AGAGGAGAAAAGGTCTGGCAAAT 59.925 43.478 0.00 0.00 36.41 2.32
829 3451 2.597520 CGACGAAGAGGAGAAAAGGTC 58.402 52.381 0.00 0.00 0.00 3.85
938 3563 4.436998 AGAAACCGGCGGCGAGAG 62.437 66.667 34.49 18.85 0.00 3.20
951 3576 1.005394 GCAGGAACCGTCGGAGAAA 60.005 57.895 20.51 0.00 39.69 2.52
952 3577 1.874345 GAGCAGGAACCGTCGGAGAA 61.874 60.000 20.51 0.00 39.69 2.87
955 3584 2.154798 CTTGAGCAGGAACCGTCGGA 62.155 60.000 20.51 0.00 0.00 4.55
969 3598 1.073199 AAAGGCACCGACCCTTGAG 59.927 57.895 2.64 0.00 41.70 3.02
970 3599 1.228124 CAAAGGCACCGACCCTTGA 60.228 57.895 2.64 0.00 41.70 3.02
972 3601 2.115266 CCAAAGGCACCGACCCTT 59.885 61.111 0.00 0.00 44.35 3.95
977 3606 2.144078 TGGAGACCAAAGGCACCGA 61.144 57.895 0.00 0.00 0.00 4.69
981 3610 2.281484 GCGTGGAGACCAAAGGCA 60.281 61.111 0.00 0.00 34.18 4.75
983 3612 1.079127 ATCGCGTGGAGACCAAAGG 60.079 57.895 5.77 0.00 34.18 3.11
1304 3941 2.589540 CAATACAGCCCGGAGCCA 59.410 61.111 0.73 0.00 45.47 4.75
1307 3944 0.748005 CCAACCAATACAGCCCGGAG 60.748 60.000 0.73 0.00 0.00 4.63
1332 3970 2.621055 TCCAACCATTTCAGACCAAACG 59.379 45.455 0.00 0.00 0.00 3.60
1358 3996 0.757935 GCATCCCTGTGCCCAATCAT 60.758 55.000 0.00 0.00 39.18 2.45
1368 4006 3.461773 CTCCCGTCGCATCCCTGT 61.462 66.667 0.00 0.00 0.00 4.00
1384 4022 1.077068 CCTCTCCTCGGCTGTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
1490 4128 7.755582 AATAAACTCAAAACAACAGAGCAAC 57.244 32.000 0.00 0.00 32.71 4.17
1494 4132 7.230712 ACCCCTAATAAACTCAAAACAACAGAG 59.769 37.037 0.00 0.00 35.56 3.35
1511 4149 5.949354 CAGATCAAAACCACAACCCCTAATA 59.051 40.000 0.00 0.00 0.00 0.98
1684 4329 7.878127 TCTTCAAACTAGAAAGTTCCGAATCAT 59.122 33.333 0.00 0.00 45.37 2.45
1841 4497 9.512588 GTAATCCATGAGAAGAATCCATAACAT 57.487 33.333 0.00 0.00 0.00 2.71
1873 4529 4.560136 AGTAGATGTACACTGATGCTCG 57.440 45.455 0.00 0.00 0.00 5.03
1895 4551 8.149973 AGAAAAATTACTGTCACAACATACGT 57.850 30.769 0.00 0.00 34.13 3.57
1912 4568 7.467131 GCAAGCACCACATTTGTAAGAAAAATT 60.467 33.333 0.00 0.00 0.00 1.82
2154 4811 1.774254 ACAGTTGGGATCACAAGACCA 59.226 47.619 11.59 0.00 0.00 4.02
2155 4812 2.568623 ACAGTTGGGATCACAAGACC 57.431 50.000 11.59 0.00 0.00 3.85
2206 4864 2.102588 GGGAGTATAACACAGCGGATGT 59.897 50.000 0.00 0.00 45.43 3.06
2221 4879 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
2222 4880 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
2223 4881 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2224 4882 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2225 4883 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2226 4884 3.612860 CGACAAGTAATTCAGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
2227 4885 3.060895 GCGACAAGTAATTCAGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
2228 4886 2.991190 GCGACAAGTAATTCAGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
2229 4887 2.734606 TGCGACAAGTAATTCAGAACGG 59.265 45.455 0.00 0.00 0.00 4.44
2230 4888 4.084537 ACTTGCGACAAGTAATTCAGAACG 60.085 41.667 19.21 0.00 0.00 3.95
2231 4889 5.344207 ACTTGCGACAAGTAATTCAGAAC 57.656 39.130 19.21 0.00 0.00 3.01
2232 4890 6.092122 CCATACTTGCGACAAGTAATTCAGAA 59.908 38.462 25.44 11.09 36.45 3.02
2233 4891 5.580691 CCATACTTGCGACAAGTAATTCAGA 59.419 40.000 25.44 11.61 36.45 3.27
2234 4892 5.580691 TCCATACTTGCGACAAGTAATTCAG 59.419 40.000 25.44 16.48 36.45 3.02
2235 4893 5.483811 TCCATACTTGCGACAAGTAATTCA 58.516 37.500 25.44 12.66 36.45 2.57
2236 4894 6.037172 ACATCCATACTTGCGACAAGTAATTC 59.963 38.462 25.44 0.00 36.45 2.17
2237 4895 5.880332 ACATCCATACTTGCGACAAGTAATT 59.120 36.000 25.44 14.21 36.45 1.40
2238 4896 5.428253 ACATCCATACTTGCGACAAGTAAT 58.572 37.500 25.44 16.71 36.45 1.89
2239 4897 4.827692 ACATCCATACTTGCGACAAGTAA 58.172 39.130 25.44 15.64 36.45 2.24
2240 4898 4.465632 ACATCCATACTTGCGACAAGTA 57.534 40.909 24.52 24.52 37.18 2.24
2241 4899 3.334583 ACATCCATACTTGCGACAAGT 57.665 42.857 22.53 22.53 0.00 3.16
2242 4900 5.292765 AGATACATCCATACTTGCGACAAG 58.707 41.667 15.16 15.16 0.00 3.16
2243 4901 5.276461 AGATACATCCATACTTGCGACAA 57.724 39.130 0.00 0.00 0.00 3.18
2244 4902 4.937201 AGATACATCCATACTTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
2245 4903 6.255596 TCTAGATACATCCATACTTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
2246 4904 6.434340 ACATCTAGATACATCCATACTTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
2247 4905 6.625362 ACATCTAGATACATCCATACTTGCG 58.375 40.000 4.54 0.00 0.00 4.85
2274 4932 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
2275 4933 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2276 4934 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
2277 4935 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
2278 4936 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
2279 4937 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
2280 4938 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
2281 4939 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
2282 4940 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2283 4941 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2284 4942 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2285 4943 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2286 4944 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2287 4945 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2288 4946 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2289 4947 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2290 4948 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2291 4949 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
2292 4950 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2293 4951 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2294 4952 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2295 4953 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2296 4954 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2297 4955 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2298 4956 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2299 4957 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2300 4958 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2301 4959 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2302 4960 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2303 4961 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2304 4962 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2305 4963 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2306 4964 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2307 4965 5.427481 AGAATACTCCCTCCGTTCCAAATTA 59.573 40.000 0.00 0.00 0.00 1.40
2308 4966 4.227527 AGAATACTCCCTCCGTTCCAAATT 59.772 41.667 0.00 0.00 0.00 1.82
2309 4967 3.780850 AGAATACTCCCTCCGTTCCAAAT 59.219 43.478 0.00 0.00 0.00 2.32
2310 4968 3.178865 AGAATACTCCCTCCGTTCCAAA 58.821 45.455 0.00 0.00 0.00 3.28
2311 4969 2.764572 GAGAATACTCCCTCCGTTCCAA 59.235 50.000 0.00 0.00 37.19 3.53
2312 4970 2.024273 AGAGAATACTCCCTCCGTTCCA 60.024 50.000 0.00 0.00 43.53 3.53
2313 4971 2.668625 AGAGAATACTCCCTCCGTTCC 58.331 52.381 0.00 0.00 43.53 3.62
2314 4972 5.131784 TCTTAGAGAATACTCCCTCCGTTC 58.868 45.833 0.00 0.00 43.53 3.95
2315 4973 5.126699 TCTTAGAGAATACTCCCTCCGTT 57.873 43.478 0.00 0.00 43.53 4.44
2316 4974 4.792513 TCTTAGAGAATACTCCCTCCGT 57.207 45.455 0.00 0.00 43.53 4.69
2317 4975 6.265649 TCATTTCTTAGAGAATACTCCCTCCG 59.734 42.308 0.00 0.00 43.53 4.63
2318 4976 7.289084 ACTCATTTCTTAGAGAATACTCCCTCC 59.711 40.741 0.00 0.00 43.53 4.30
2319 4977 8.141268 CACTCATTTCTTAGAGAATACTCCCTC 58.859 40.741 0.00 0.00 43.53 4.30
2320 4978 7.070571 CCACTCATTTCTTAGAGAATACTCCCT 59.929 40.741 0.00 0.00 43.53 4.20
2321 4979 7.213678 CCACTCATTTCTTAGAGAATACTCCC 58.786 42.308 0.00 0.00 43.53 4.30
2322 4980 6.704050 GCCACTCATTTCTTAGAGAATACTCC 59.296 42.308 0.00 0.00 43.53 3.85
2323 4981 7.268586 TGCCACTCATTTCTTAGAGAATACTC 58.731 38.462 0.00 0.00 42.90 2.59
2324 4982 7.124901 TCTGCCACTCATTTCTTAGAGAATACT 59.875 37.037 0.00 0.00 33.67 2.12
2325 4983 7.268586 TCTGCCACTCATTTCTTAGAGAATAC 58.731 38.462 0.00 0.00 33.67 1.89
2479 5137 8.654997 ACAGAGTAGCATATTTAAGGACATGAT 58.345 33.333 0.00 0.00 0.00 2.45
2480 5138 8.023021 ACAGAGTAGCATATTTAAGGACATGA 57.977 34.615 0.00 0.00 0.00 3.07
2481 5139 8.668510 AACAGAGTAGCATATTTAAGGACATG 57.331 34.615 0.00 0.00 0.00 3.21
2483 5141 9.764363 CATAACAGAGTAGCATATTTAAGGACA 57.236 33.333 0.00 0.00 0.00 4.02
2484 5142 8.713271 GCATAACAGAGTAGCATATTTAAGGAC 58.287 37.037 0.00 0.00 0.00 3.85
2485 5143 7.878127 GGCATAACAGAGTAGCATATTTAAGGA 59.122 37.037 0.00 0.00 0.00 3.36
2486 5144 7.119846 GGGCATAACAGAGTAGCATATTTAAGG 59.880 40.741 0.00 0.00 0.00 2.69
2487 5145 7.661437 TGGGCATAACAGAGTAGCATATTTAAG 59.339 37.037 0.00 0.00 0.00 1.85
2488 5146 7.513856 TGGGCATAACAGAGTAGCATATTTAA 58.486 34.615 0.00 0.00 0.00 1.52
2489 5147 7.073457 TGGGCATAACAGAGTAGCATATTTA 57.927 36.000 0.00 0.00 0.00 1.40
2490 5148 5.940617 TGGGCATAACAGAGTAGCATATTT 58.059 37.500 0.00 0.00 0.00 1.40
2491 5149 5.567037 TGGGCATAACAGAGTAGCATATT 57.433 39.130 0.00 0.00 0.00 1.28
2492 5150 5.567037 TTGGGCATAACAGAGTAGCATAT 57.433 39.130 0.00 0.00 0.00 1.78
2493 5151 5.513094 GGATTGGGCATAACAGAGTAGCATA 60.513 44.000 0.00 0.00 0.00 3.14
2494 5152 3.931907 TTGGGCATAACAGAGTAGCAT 57.068 42.857 0.00 0.00 0.00 3.79
2495 5153 3.433598 GGATTGGGCATAACAGAGTAGCA 60.434 47.826 0.00 0.00 0.00 3.49
2496 5154 3.142174 GGATTGGGCATAACAGAGTAGC 58.858 50.000 0.00 0.00 0.00 3.58
2497 5155 4.422073 TGGATTGGGCATAACAGAGTAG 57.578 45.455 0.00 0.00 0.00 2.57
2498 5156 5.387113 AATGGATTGGGCATAACAGAGTA 57.613 39.130 0.00 0.00 0.00 2.59
2499 5157 3.959495 ATGGATTGGGCATAACAGAGT 57.041 42.857 0.00 0.00 0.00 3.24
2500 5158 5.829924 AGTAAATGGATTGGGCATAACAGAG 59.170 40.000 0.00 0.00 0.00 3.35
2501 5159 5.593909 CAGTAAATGGATTGGGCATAACAGA 59.406 40.000 0.00 0.00 0.00 3.41
2502 5160 5.360714 ACAGTAAATGGATTGGGCATAACAG 59.639 40.000 0.00 0.00 0.00 3.16
2503 5161 5.268387 ACAGTAAATGGATTGGGCATAACA 58.732 37.500 0.00 0.00 0.00 2.41
2504 5162 5.852282 ACAGTAAATGGATTGGGCATAAC 57.148 39.130 0.00 0.00 0.00 1.89
2505 5163 5.830991 GGTACAGTAAATGGATTGGGCATAA 59.169 40.000 0.00 0.00 0.00 1.90
2506 5164 5.133660 AGGTACAGTAAATGGATTGGGCATA 59.866 40.000 0.00 0.00 0.00 3.14
2507 5165 4.079212 AGGTACAGTAAATGGATTGGGCAT 60.079 41.667 0.00 0.00 0.00 4.40
2508 5166 3.268334 AGGTACAGTAAATGGATTGGGCA 59.732 43.478 0.00 0.00 0.00 5.36
2509 5167 3.898482 AGGTACAGTAAATGGATTGGGC 58.102 45.455 0.00 0.00 0.00 5.36
2510 5168 5.505780 TCAAGGTACAGTAAATGGATTGGG 58.494 41.667 0.00 0.00 0.00 4.12
2511 5169 7.339212 TCAATCAAGGTACAGTAAATGGATTGG 59.661 37.037 16.56 5.68 39.46 3.16
2512 5170 8.279970 TCAATCAAGGTACAGTAAATGGATTG 57.720 34.615 13.11 13.11 40.02 2.67
2519 5177 9.162764 GCTTATCTTCAATCAAGGTACAGTAAA 57.837 33.333 0.00 0.00 32.22 2.01
2579 5239 5.919141 CAGCTTCATGGAAGAAAGAAAACAG 59.081 40.000 10.01 0.00 41.71 3.16
2585 5245 3.072915 TGACCAGCTTCATGGAAGAAAGA 59.927 43.478 10.01 0.00 43.57 2.52
2586 5246 3.415212 TGACCAGCTTCATGGAAGAAAG 58.585 45.455 10.01 0.00 43.57 2.62
2642 5304 4.464597 AGAAGTACCTCAAGATCAGGACAC 59.535 45.833 4.64 2.74 34.75 3.67
2713 5375 4.730949 AGCTGCAATCATTTTGCTATGT 57.269 36.364 11.18 0.00 45.13 2.29
2742 5404 4.850680 TGGACACTGGACAAACTTAAACT 58.149 39.130 0.00 0.00 0.00 2.66
2829 5492 3.450096 TGCATCAGAAGCATGTAGTCTCT 59.550 43.478 0.00 0.00 37.02 3.10
2929 5602 5.046376 TGCTCATGATAGACAGAAAACCTGA 60.046 40.000 0.00 0.00 45.78 3.86
3023 5696 6.119144 TGGAGAAAAGAAAAACAAGACTCG 57.881 37.500 0.00 0.00 0.00 4.18
3093 5766 7.783090 ATGCACAACAGTAGATTCAGATTAG 57.217 36.000 0.00 0.00 0.00 1.73
3142 5815 5.838531 TTAGGTACAACAACTGGTTTTGG 57.161 39.130 0.00 0.00 37.72 3.28
3148 5822 5.763204 AGAACACATTAGGTACAACAACTGG 59.237 40.000 0.00 0.00 0.00 4.00
3189 5863 9.730705 AATAAGACTCATCAGATCAAGAAAACA 57.269 29.630 0.00 0.00 0.00 2.83
3215 5889 8.086143 AGTTCCTTTGCATATACCTAGTACAA 57.914 34.615 0.00 0.00 0.00 2.41
3494 6172 2.260844 TCAGGTGAAGCAGAACCTTG 57.739 50.000 1.76 0.00 44.63 3.61
3498 6176 4.142609 TCCATATCAGGTGAAGCAGAAC 57.857 45.455 0.00 0.00 0.00 3.01
3531 6212 2.586425 TCAAAAGTTCTTCCCTGCCAG 58.414 47.619 0.00 0.00 0.00 4.85
3846 6531 2.651455 CATGACACCATCTCATGCCTT 58.349 47.619 0.00 0.00 38.87 4.35
3901 6586 1.338136 ACCACCTGGATAGCTTCCCG 61.338 60.000 0.00 6.10 44.77 5.14
3909 6594 1.131638 GATCTGCCACCACCTGGATA 58.868 55.000 0.00 0.00 43.95 2.59
3915 6600 1.741770 GACACGATCTGCCACCACC 60.742 63.158 0.00 0.00 0.00 4.61
4140 6825 0.320771 CAACACCAGGAGGGAGTTCG 60.321 60.000 0.00 0.00 45.93 3.95
4229 6917 1.795768 GTCACTGCCAGATTCGTCAA 58.204 50.000 0.00 0.00 0.00 3.18
4271 6959 1.203174 TCATGTCTGGACCTCCTGTCA 60.203 52.381 0.00 1.73 46.38 3.58
4272 6960 1.480137 CTCATGTCTGGACCTCCTGTC 59.520 57.143 0.00 0.00 43.67 3.51
4334 7022 2.361104 TGGCATTGGACCCTTCGC 60.361 61.111 0.00 0.00 0.00 4.70
4341 7029 1.909700 TCTTTCCAGTGGCATTGGAC 58.090 50.000 28.94 0.00 44.13 4.02
4510 7198 3.624861 CACTGGCACTAGACATTTCCATC 59.375 47.826 0.00 0.00 27.70 3.51
4511 7199 3.009473 ACACTGGCACTAGACATTTCCAT 59.991 43.478 0.00 0.00 27.70 3.41
4512 7200 2.371841 ACACTGGCACTAGACATTTCCA 59.628 45.455 0.00 0.00 27.70 3.53
4521 7209 0.674895 GCTTGGGACACTGGCACTAG 60.675 60.000 0.00 0.00 39.29 2.57
4541 7229 6.539173 ACTGTGATATGTGGTTGTTTAGGAA 58.461 36.000 0.00 0.00 0.00 3.36
4557 7245 1.675714 CCGGAAGCAGCAACTGTGATA 60.676 52.381 0.00 0.00 33.43 2.15
4571 7262 1.469940 CGACAGACATCTTCCCGGAAG 60.470 57.143 19.80 19.80 40.65 3.46
4572 7263 0.530744 CGACAGACATCTTCCCGGAA 59.469 55.000 0.73 0.00 0.00 4.30
4573 7264 0.323087 TCGACAGACATCTTCCCGGA 60.323 55.000 0.73 0.00 0.00 5.14
4585 7276 1.269448 GGCCTTTTTGCATTCGACAGA 59.731 47.619 0.00 0.00 0.00 3.41
4590 7281 2.437200 TCTTGGCCTTTTTGCATTCG 57.563 45.000 3.32 0.00 0.00 3.34
4634 7327 1.895707 ACACAGCCAGAGCAAGCAC 60.896 57.895 0.00 0.00 43.56 4.40
4635 7328 1.895231 CACACAGCCAGAGCAAGCA 60.895 57.895 0.00 0.00 43.56 3.91
4684 7377 0.811915 ATCTTCACGTCAGTCTCCCG 59.188 55.000 0.00 0.00 0.00 5.14
4686 7379 3.305398 ACAATCTTCACGTCAGTCTCC 57.695 47.619 0.00 0.00 0.00 3.71
4689 7382 4.058817 AGGAAACAATCTTCACGTCAGTC 58.941 43.478 0.00 0.00 0.00 3.51
4747 7472 5.766174 ACAAGTCACAACCCACGTTATATTT 59.234 36.000 0.00 0.00 0.00 1.40
4970 8150 1.384191 GAATGGGGGCAGGTTGTCT 59.616 57.895 0.00 0.00 0.00 3.41
4985 8165 5.450965 GCAGGAATCGTTCAATGAATGGAAT 60.451 40.000 14.46 1.91 0.00 3.01
5000 8183 2.554032 ACTCCAAAGTTTGCAGGAATCG 59.446 45.455 11.21 0.00 28.74 3.34
5116 8307 6.209986 TGAATGAGAGAATGCATTTTCAAGGT 59.790 34.615 26.48 10.23 35.05 3.50
5117 8308 6.627243 TGAATGAGAGAATGCATTTTCAAGG 58.373 36.000 26.48 0.00 35.05 3.61
5160 8351 2.641815 AGAGGTGCCTGAGATGAAACTT 59.358 45.455 0.00 0.00 0.00 2.66
5168 8359 2.856760 ATTAGGAGAGGTGCCTGAGA 57.143 50.000 0.00 0.00 36.96 3.27
5174 8365 6.407202 TGAGAAAAAGTATTAGGAGAGGTGC 58.593 40.000 0.00 0.00 0.00 5.01
5193 8384 7.546358 ACCGATTAAATGCATTTGAATGAGAA 58.454 30.769 30.43 17.10 38.70 2.87
5216 8407 0.098200 GCCGCCTCGTTAAAATGACC 59.902 55.000 0.00 0.00 0.00 4.02
5234 8425 1.876497 ATGACAACAATGGGCGGTGC 61.876 55.000 0.00 0.00 0.00 5.01
5235 8426 0.602562 AATGACAACAATGGGCGGTG 59.397 50.000 0.00 0.00 0.00 4.94
5236 8427 1.272212 GAAATGACAACAATGGGCGGT 59.728 47.619 0.00 0.00 0.00 5.68
5237 8428 1.404047 GGAAATGACAACAATGGGCGG 60.404 52.381 0.00 0.00 0.00 6.13
5288 8505 0.040351 TCAAATTCAATGGGGCGGGA 59.960 50.000 0.00 0.00 0.00 5.14
5290 8507 1.405391 GGTTCAAATTCAATGGGGCGG 60.405 52.381 0.00 0.00 0.00 6.13
5291 8508 1.405391 GGGTTCAAATTCAATGGGGCG 60.405 52.381 0.00 0.00 0.00 6.13
5292 8509 1.065491 GGGGTTCAAATTCAATGGGGC 60.065 52.381 0.00 0.00 0.00 5.80
5293 8510 2.264455 TGGGGTTCAAATTCAATGGGG 58.736 47.619 0.00 0.00 0.00 4.96
5294 8511 3.072184 TGTTGGGGTTCAAATTCAATGGG 59.928 43.478 0.00 0.00 37.08 4.00
5295 8512 4.317488 CTGTTGGGGTTCAAATTCAATGG 58.683 43.478 0.00 0.00 37.08 3.16
5346 8563 3.140141 ATGCGTTGGCGATTGGGG 61.140 61.111 0.00 0.00 44.10 4.96
5384 8601 0.674581 TGGAATGTGAAGGCAGAGCG 60.675 55.000 0.00 0.00 0.00 5.03
5389 8606 1.142667 TGAGTGTGGAATGTGAAGGCA 59.857 47.619 0.00 0.00 0.00 4.75
5401 8618 2.951229 AAGTAGGGGTTTGAGTGTGG 57.049 50.000 0.00 0.00 0.00 4.17
5409 8626 4.733165 GAAGGTTGGTTAAGTAGGGGTTT 58.267 43.478 0.00 0.00 0.00 3.27
5424 8641 1.012486 GCGTGGGTAGACGAAGGTTG 61.012 60.000 0.00 0.00 42.10 3.77
5432 8651 2.541556 GAATTCTGAGCGTGGGTAGAC 58.458 52.381 0.00 0.00 0.00 2.59
5440 8659 1.207329 GTGGGTAGGAATTCTGAGCGT 59.793 52.381 5.23 0.00 0.00 5.07
5443 8662 2.237143 TGCTGTGGGTAGGAATTCTGAG 59.763 50.000 5.23 0.00 0.00 3.35
5449 8668 1.207488 TGGCTGCTGTGGGTAGGAAT 61.207 55.000 0.00 0.00 0.00 3.01
5467 8686 3.806380 CTGGATGGATGAGAGGTTTCTG 58.194 50.000 0.00 0.00 32.53 3.02
5472 8691 0.326904 TGGCTGGATGGATGAGAGGT 60.327 55.000 0.00 0.00 0.00 3.85
5473 8692 1.065647 ATGGCTGGATGGATGAGAGG 58.934 55.000 0.00 0.00 0.00 3.69
5474 8693 1.271434 CCATGGCTGGATGGATGAGAG 60.271 57.143 0.00 0.00 46.37 3.20
5475 8694 0.769247 CCATGGCTGGATGGATGAGA 59.231 55.000 0.00 0.00 46.37 3.27
5476 8695 0.894184 GCCATGGCTGGATGGATGAG 60.894 60.000 29.98 0.00 46.37 2.90
5477 8696 1.152138 GCCATGGCTGGATGGATGA 59.848 57.895 29.98 0.00 46.37 2.92
5478 8697 2.265904 CGCCATGGCTGGATGGATG 61.266 63.158 33.07 11.50 46.37 3.51
5479 8698 2.114625 CGCCATGGCTGGATGGAT 59.885 61.111 33.07 0.00 46.37 3.41
5480 8699 4.193893 CCGCCATGGCTGGATGGA 62.194 66.667 31.65 0.00 46.37 3.41
5481 8700 4.193893 TCCGCCATGGCTGGATGG 62.194 66.667 32.90 26.56 46.37 3.51
5482 8701 2.903855 GTCCGCCATGGCTGGATG 60.904 66.667 36.23 22.50 46.37 3.51
5483 8702 3.092511 AGTCCGCCATGGCTGGAT 61.093 61.111 36.23 26.46 46.37 3.41
5484 8703 4.100084 CAGTCCGCCATGGCTGGA 62.100 66.667 32.90 32.90 46.37 3.86
5486 8705 4.415150 ACCAGTCCGCCATGGCTG 62.415 66.667 33.07 27.27 40.45 4.85
5487 8706 4.101448 GACCAGTCCGCCATGGCT 62.101 66.667 33.07 13.87 40.45 4.75
5497 8716 3.827898 CGGGAGCGAGGACCAGTC 61.828 72.222 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.