Multiple sequence alignment - TraesCS5A01G029900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G029900 chr5A 100.000 5567 0 0 1 5567 25886879 25892445 0.000000e+00 10281.0
1 TraesCS5A01G029900 chr5A 87.534 369 19 7 2308 2673 554347670 554348014 8.690000e-108 401.0
2 TraesCS5A01G029900 chr5A 85.459 392 24 19 2285 2673 560883354 560882993 1.460000e-100 377.0
3 TraesCS5A01G029900 chr5A 95.652 138 6 0 3280 3417 101414076 101414213 7.260000e-54 222.0
4 TraesCS5A01G029900 chr5A 89.231 130 12 2 1861 1989 560883602 560883474 1.600000e-35 161.0
5 TraesCS5A01G029900 chr5A 96.875 96 3 0 5388 5483 580286942 580286847 1.600000e-35 161.0
6 TraesCS5A01G029900 chr5A 95.918 98 3 1 5389 5486 505136410 505136314 2.080000e-34 158.0
7 TraesCS5A01G029900 chr5A 96.774 93 2 1 5394 5486 413843419 413843510 2.690000e-33 154.0
8 TraesCS5A01G029900 chr5A 97.727 88 2 0 5396 5483 687871682 687871769 9.660000e-33 152.0
9 TraesCS5A01G029900 chr5A 93.137 102 5 2 2820 2920 554348010 554348110 1.250000e-31 148.0
10 TraesCS5A01G029900 chr5D 91.578 1781 80 37 140 1861 36760743 36762512 0.000000e+00 2394.0
11 TraesCS5A01G029900 chr5D 91.266 1603 83 31 3814 5398 36764306 36765869 0.000000e+00 2132.0
12 TraesCS5A01G029900 chr5D 94.986 1037 49 3 2247 3283 36762936 36763969 0.000000e+00 1624.0
13 TraesCS5A01G029900 chr5D 92.327 391 23 1 1861 2244 36762465 36762855 2.930000e-152 549.0
14 TraesCS5A01G029900 chr5D 87.316 339 14 10 3408 3717 36763966 36764304 1.470000e-95 361.0
15 TraesCS5A01G029900 chr5D 93.706 143 8 1 1 142 36760142 36760284 4.370000e-51 213.0
16 TraesCS5A01G029900 chr5D 92.857 56 1 2 5483 5537 36765871 36765924 1.660000e-10 78.7
17 TraesCS5A01G029900 chr5D 75.641 156 20 16 1183 1337 452560827 452560965 1.670000e-05 62.1
18 TraesCS5A01G029900 chr5B 93.698 1079 54 9 4082 5152 27509477 27510549 0.000000e+00 1604.0
19 TraesCS5A01G029900 chr5B 88.807 1358 67 34 561 1861 27506047 27507376 0.000000e+00 1587.0
20 TraesCS5A01G029900 chr5B 94.573 995 49 5 2247 3241 27507795 27508784 0.000000e+00 1533.0
21 TraesCS5A01G029900 chr5B 94.819 386 18 1 1861 2244 27507329 27507714 7.980000e-168 601.0
22 TraesCS5A01G029900 chr5B 94.505 273 14 1 3813 4085 27509134 27509405 2.400000e-113 420.0
23 TraesCS5A01G029900 chr5B 85.924 341 19 12 3408 3719 27508795 27509135 2.480000e-88 337.0
24 TraesCS5A01G029900 chr5B 93.706 143 9 0 3278 3420 267473028 267472886 1.210000e-51 215.0
25 TraesCS5A01G029900 chr5B 78.697 399 20 28 135 507 27505418 27505777 7.310000e-49 206.0
26 TraesCS5A01G029900 chr6B 88.377 869 85 11 999 1861 670366591 670367449 0.000000e+00 1031.0
27 TraesCS5A01G029900 chr6B 86.547 944 81 23 1984 2916 670367608 670368516 0.000000e+00 998.0
28 TraesCS5A01G029900 chr6B 90.016 641 56 6 878 1516 371123820 371124454 0.000000e+00 822.0
29 TraesCS5A01G029900 chr6B 94.366 142 6 2 3274 3413 171052246 171052387 3.380000e-52 217.0
30 TraesCS5A01G029900 chr6B 91.473 129 10 1 1861 1989 670367403 670367530 5.730000e-40 176.0
31 TraesCS5A01G029900 chr6B 93.458 107 7 0 3715 3821 424084089 424084195 5.770000e-35 159.0
32 TraesCS5A01G029900 chr6B 93.458 107 7 0 3715 3821 424306787 424306893 5.770000e-35 159.0
33 TraesCS5A01G029900 chr6D 92.297 701 41 8 1167 1861 196357138 196357831 0.000000e+00 983.0
34 TraesCS5A01G029900 chr6D 86.582 395 20 19 2282 2673 196358029 196358393 6.720000e-109 405.0
35 TraesCS5A01G029900 chr6D 90.769 130 11 1 1861 1990 196357785 196357913 7.410000e-39 172.0
36 TraesCS5A01G029900 chr6D 94.118 102 4 2 2820 2920 196358389 196358489 2.690000e-33 154.0
37 TraesCS5A01G029900 chr7A 91.298 701 48 9 1167 1861 724635749 724636442 0.000000e+00 944.0
38 TraesCS5A01G029900 chr7A 86.413 368 24 15 2308 2673 724636619 724636962 4.070000e-101 379.0
39 TraesCS5A01G029900 chr7A 90.769 130 11 1 1861 1990 724636396 724636524 7.410000e-39 172.0
40 TraesCS5A01G029900 chr7A 93.137 102 5 2 2820 2920 724636958 724637058 1.250000e-31 148.0
41 TraesCS5A01G029900 chr1A 91.155 701 49 10 1167 1861 527084786 527084093 0.000000e+00 939.0
42 TraesCS5A01G029900 chr1A 85.204 392 25 18 2285 2673 527083893 527083532 6.810000e-99 372.0
43 TraesCS5A01G029900 chr1A 94.175 103 4 2 5383 5483 514886258 514886360 7.470000e-34 156.0
44 TraesCS5A01G029900 chr1A 94.175 103 4 2 5383 5483 515142524 515142626 7.470000e-34 156.0
45 TraesCS5A01G029900 chr1A 91.818 110 9 0 3717 3826 516778199 516778090 2.690000e-33 154.0
46 TraesCS5A01G029900 chr3A 91.013 701 50 8 1167 1861 657438927 657439620 0.000000e+00 933.0
47 TraesCS5A01G029900 chr3A 90.585 701 52 9 1167 1861 50434749 50435441 0.000000e+00 917.0
48 TraesCS5A01G029900 chr3A 85.316 395 24 20 2282 2673 50435638 50436001 1.460000e-100 377.0
49 TraesCS5A01G029900 chr3A 90.370 135 10 3 1855 1989 657439570 657439701 2.060000e-39 174.0
50 TraesCS5A01G029900 chr3A 90.698 129 11 1 1861 1989 50435395 50435522 2.670000e-38 171.0
51 TraesCS5A01G029900 chr6A 91.069 683 49 7 1167 1843 518947293 518947969 0.000000e+00 913.0
52 TraesCS5A01G029900 chr6A 90.300 701 53 11 1167 1861 349779059 349779750 0.000000e+00 904.0
53 TraesCS5A01G029900 chr6A 89.729 701 59 10 1167 1861 508000090 508000783 0.000000e+00 883.0
54 TraesCS5A01G029900 chr6A 84.810 395 26 20 2282 2673 508000982 508001345 3.170000e-97 366.0
55 TraesCS5A01G029900 chr6A 84.557 395 26 20 2282 2673 518952521 518952883 5.300000e-95 359.0
56 TraesCS5A01G029900 chr6A 85.366 369 27 16 2308 2673 349779968 349780312 1.910000e-94 357.0
57 TraesCS5A01G029900 chr6A 90.769 130 10 2 1861 1989 508000737 508000865 7.410000e-39 172.0
58 TraesCS5A01G029900 chr6A 90.698 129 11 1 1861 1989 349779704 349779831 2.670000e-38 171.0
59 TraesCS5A01G029900 chr6A 92.453 106 5 3 2816 2920 508001338 508001441 1.250000e-31 148.0
60 TraesCS5A01G029900 chr1B 88.992 645 59 7 1167 1805 552390555 552389917 0.000000e+00 787.0
61 TraesCS5A01G029900 chr1B 85.219 663 56 29 1861 2495 127645529 127646177 1.310000e-180 643.0
62 TraesCS5A01G029900 chr1B 88.132 514 60 1 878 1391 78426160 78425648 1.330000e-170 610.0
63 TraesCS5A01G029900 chr1B 90.991 222 20 0 878 1099 127645253 127645474 3.260000e-77 300.0
64 TraesCS5A01G029900 chr1B 92.105 114 5 4 3716 3826 568530943 568530831 2.080000e-34 158.0
65 TraesCS5A01G029900 chr1B 92.079 101 7 1 1761 1861 127645476 127645575 2.090000e-29 141.0
66 TraesCS5A01G029900 chr7B 86.271 641 53 18 878 1516 630364458 630365065 0.000000e+00 664.0
67 TraesCS5A01G029900 chr7B 95.683 139 4 2 3273 3410 219565142 219565279 7.260000e-54 222.0
68 TraesCS5A01G029900 chr7B 97.030 101 3 0 3714 3814 495369041 495368941 2.670000e-38 171.0
69 TraesCS5A01G029900 chr7B 94.340 106 5 1 3713 3817 589348421 589348316 1.600000e-35 161.0
70 TraesCS5A01G029900 chr7B 94.231 104 6 0 3718 3821 562993066 562993169 5.770000e-35 159.0
71 TraesCS5A01G029900 chr4B 89.817 383 31 7 1136 1516 267075501 267075877 8.380000e-133 484.0
72 TraesCS5A01G029900 chr4B 98.925 93 0 1 5398 5490 600126334 600126425 1.240000e-36 165.0
73 TraesCS5A01G029900 chr2D 87.342 395 21 7 1167 1536 464808888 464808498 5.150000e-115 425.0
74 TraesCS5A01G029900 chr2D 88.755 249 24 2 1532 1776 464802875 464802627 9.060000e-78 302.0
75 TraesCS5A01G029900 chr2A 86.990 392 18 15 2285 2673 65084938 65085299 1.440000e-110 411.0
76 TraesCS5A01G029900 chr2A 94.231 104 4 2 5381 5482 78805780 78805677 2.080000e-34 158.0
77 TraesCS5A01G029900 chr2A 93.396 106 4 3 2816 2920 94222583 94222686 2.690000e-33 154.0
78 TraesCS5A01G029900 chr2A 93.137 102 5 2 2820 2920 65085295 65085395 1.250000e-31 148.0
79 TraesCS5A01G029900 chr3B 87.568 370 18 17 2308 2673 61518769 61519114 2.420000e-108 403.0
80 TraesCS5A01G029900 chr3B 97.015 134 3 1 3278 3410 570934203 570934336 2.020000e-54 224.0
81 TraesCS5A01G029900 chrUn 96.970 132 4 0 3279 3410 34537957 34537826 7.260000e-54 222.0
82 TraesCS5A01G029900 chr4A 97.692 130 2 1 3280 3409 46564749 46564621 7.260000e-54 222.0
83 TraesCS5A01G029900 chr2B 96.296 135 4 1 3273 3407 776888733 776888866 2.610000e-53 220.0
84 TraesCS5A01G029900 chr2B 90.506 158 11 4 3266 3421 231667400 231667555 7.310000e-49 206.0
85 TraesCS5A01G029900 chr2B 95.192 104 4 1 3711 3814 584118692 584118590 4.460000e-36 163.0
86 TraesCS5A01G029900 chr2B 92.593 108 8 0 3708 3815 458623249 458623142 7.470000e-34 156.0
87 TraesCS5A01G029900 chr2B 92.523 107 5 3 5380 5483 535031437 535031543 3.470000e-32 150.0
88 TraesCS5A01G029900 chr3D 89.286 140 6 5 1 133 52360090 52360227 3.450000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G029900 chr5A 25886879 25892445 5566 False 10281.000000 10281 100.000000 1 5567 1 chr5A.!!$F1 5566
1 TraesCS5A01G029900 chr5A 560882993 560883602 609 True 269.000000 377 87.345000 1861 2673 2 chr5A.!!$R3 812
2 TraesCS5A01G029900 chr5D 36760142 36765924 5782 False 1050.242857 2394 92.005143 1 5537 7 chr5D.!!$F2 5536
3 TraesCS5A01G029900 chr5B 27505418 27510549 5131 False 898.285714 1604 90.146143 135 5152 7 chr5B.!!$F1 5017
4 TraesCS5A01G029900 chr6B 371123820 371124454 634 False 822.000000 822 90.016000 878 1516 1 chr6B.!!$F2 638
5 TraesCS5A01G029900 chr6B 670366591 670368516 1925 False 735.000000 1031 88.799000 999 2916 3 chr6B.!!$F5 1917
6 TraesCS5A01G029900 chr6D 196357138 196358489 1351 False 428.500000 983 90.941500 1167 2920 4 chr6D.!!$F1 1753
7 TraesCS5A01G029900 chr7A 724635749 724637058 1309 False 410.750000 944 90.404250 1167 2920 4 chr7A.!!$F1 1753
8 TraesCS5A01G029900 chr1A 527083532 527084786 1254 True 655.500000 939 88.179500 1167 2673 2 chr1A.!!$R2 1506
9 TraesCS5A01G029900 chr3A 657438927 657439701 774 False 553.500000 933 90.691500 1167 1989 2 chr3A.!!$F2 822
10 TraesCS5A01G029900 chr3A 50434749 50436001 1252 False 488.333333 917 88.866333 1167 2673 3 chr3A.!!$F1 1506
11 TraesCS5A01G029900 chr6A 518947293 518947969 676 False 913.000000 913 91.069000 1167 1843 1 chr6A.!!$F1 676
12 TraesCS5A01G029900 chr6A 349779059 349780312 1253 False 477.333333 904 88.788000 1167 2673 3 chr6A.!!$F3 1506
13 TraesCS5A01G029900 chr6A 508000090 508001441 1351 False 392.250000 883 89.440250 1167 2920 4 chr6A.!!$F4 1753
14 TraesCS5A01G029900 chr1B 552389917 552390555 638 True 787.000000 787 88.992000 1167 1805 1 chr1B.!!$R2 638
15 TraesCS5A01G029900 chr1B 78425648 78426160 512 True 610.000000 610 88.132000 878 1391 1 chr1B.!!$R1 513
16 TraesCS5A01G029900 chr1B 127645253 127646177 924 False 361.333333 643 89.429667 878 2495 3 chr1B.!!$F1 1617
17 TraesCS5A01G029900 chr7B 630364458 630365065 607 False 664.000000 664 86.271000 878 1516 1 chr7B.!!$F3 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 888 0.108585 CTCTCTCTCTCCTCCCTCCG 59.891 65.0 0.00 0.0 0.00 4.63 F
946 1702 0.718343 TGCGTTGCTTGTTTTTGTGC 59.282 45.0 0.00 0.0 0.00 4.57 F
2132 3033 0.179006 GGATGAGGGCTGGTTGGATC 60.179 60.0 0.00 0.0 0.00 3.36 F
2833 3814 2.093783 GGCGGATTTCAAAGTACAGACG 59.906 50.0 0.00 0.0 0.00 4.18 F
3299 4280 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
3302 4283 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 2744 1.193203 CTCACATATTCACGATGCGGC 59.807 52.381 0.00 0.0 0.00 6.53 R
2500 3480 0.602638 TTGGTGTCATGCCACGACTC 60.603 55.000 0.03 0.0 36.16 3.36 R
3280 4261 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.0 46.06 2.59 R
3799 4812 0.105607 AATCCTACTCCCTCCGTCCC 60.106 60.000 0.00 0.0 0.00 4.46 R
4381 5471 0.901124 GTCACCTCTGAGCCAGACAT 59.099 55.000 13.76 0.0 35.39 3.06 R
5110 6226 1.089920 GCCACAGACCACAGCATAAG 58.910 55.000 0.00 0.0 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 4.943705 CCAGTATAATCACCACTTGCAGTT 59.056 41.667 0.00 0.00 0.00 3.16
93 95 4.017499 ACCCAACCTAATAATTCCAGCACT 60.017 41.667 0.00 0.00 0.00 4.40
111 113 2.136026 ACTGGGGAGTTGAAAGGTCTT 58.864 47.619 0.00 0.00 0.00 3.01
115 117 1.202940 GGGAGTTGAAAGGTCTTGGCT 60.203 52.381 0.00 0.00 0.00 4.75
122 124 2.316108 GAAAGGTCTTGGCTGGGAAAA 58.684 47.619 0.00 0.00 0.00 2.29
123 125 2.470057 AAGGTCTTGGCTGGGAAAAA 57.530 45.000 0.00 0.00 0.00 1.94
158 621 6.653320 TGGGCAGTAGTAAATAACAAGAACTG 59.347 38.462 0.00 0.00 0.00 3.16
172 635 4.884164 ACAAGAACTGAACTTTTCTGGAGG 59.116 41.667 0.00 0.00 32.26 4.30
173 636 5.126067 CAAGAACTGAACTTTTCTGGAGGA 58.874 41.667 0.00 0.00 32.26 3.71
178 641 5.449553 ACTGAACTTTTCTGGAGGACAAAT 58.550 37.500 0.00 0.00 33.45 2.32
182 645 8.477419 TGAACTTTTCTGGAGGACAAATAAAT 57.523 30.769 0.00 0.00 0.00 1.40
183 646 8.359642 TGAACTTTTCTGGAGGACAAATAAATG 58.640 33.333 0.00 0.00 0.00 2.32
225 689 4.751767 TGTGTTTGGCAAAGAGGAAAAT 57.248 36.364 13.94 0.00 0.00 1.82
226 690 4.440880 TGTGTTTGGCAAAGAGGAAAATG 58.559 39.130 13.94 0.00 0.00 2.32
227 691 4.161189 TGTGTTTGGCAAAGAGGAAAATGA 59.839 37.500 13.94 0.00 0.00 2.57
228 692 5.115480 GTGTTTGGCAAAGAGGAAAATGAA 58.885 37.500 13.94 0.00 0.00 2.57
229 693 5.584251 GTGTTTGGCAAAGAGGAAAATGAAA 59.416 36.000 13.94 0.00 0.00 2.69
251 715 3.747529 AGAAAAATCATTTGGGCTTTGCG 59.252 39.130 0.00 0.00 0.00 4.85
283 764 7.203255 AGGAGTAGTAAAATGTGAAAGCAAC 57.797 36.000 0.00 0.00 0.00 4.17
287 768 5.108385 AGTAAAATGTGAAAGCAACGAGG 57.892 39.130 0.00 0.00 0.00 4.63
288 769 2.422276 AAATGTGAAAGCAACGAGGC 57.578 45.000 0.00 0.00 0.00 4.70
331 829 6.697455 GGAAAGCTTTTTCTTGGTTTCAGTAG 59.303 38.462 14.05 0.00 46.29 2.57
378 878 1.340600 CCCGTCTTGTCCTCTCTCTCT 60.341 57.143 0.00 0.00 0.00 3.10
379 879 2.014128 CCGTCTTGTCCTCTCTCTCTC 58.986 57.143 0.00 0.00 0.00 3.20
381 881 2.355716 CGTCTTGTCCTCTCTCTCTCCT 60.356 54.545 0.00 0.00 0.00 3.69
382 882 3.279434 GTCTTGTCCTCTCTCTCTCCTC 58.721 54.545 0.00 0.00 0.00 3.71
388 888 0.108585 CTCTCTCTCTCCTCCCTCCG 59.891 65.000 0.00 0.00 0.00 4.63
389 889 1.528309 CTCTCTCTCCTCCCTCCGC 60.528 68.421 0.00 0.00 0.00 5.54
402 902 4.431524 TCCGCCCTCCCCCAATCT 62.432 66.667 0.00 0.00 0.00 2.40
410 910 1.715785 CTCCCCCAATCTCTCTCTCC 58.284 60.000 0.00 0.00 0.00 3.71
411 911 1.018840 TCCCCCAATCTCTCTCTCCA 58.981 55.000 0.00 0.00 0.00 3.86
412 912 1.582624 TCCCCCAATCTCTCTCTCCAT 59.417 52.381 0.00 0.00 0.00 3.41
414 914 1.977129 CCCCAATCTCTCTCTCCATCC 59.023 57.143 0.00 0.00 0.00 3.51
415 915 2.687297 CCCAATCTCTCTCTCCATCCA 58.313 52.381 0.00 0.00 0.00 3.41
416 916 3.249752 CCCAATCTCTCTCTCCATCCAT 58.750 50.000 0.00 0.00 0.00 3.41
467 967 2.142761 TCCTCATCCGCCCCATCAG 61.143 63.158 0.00 0.00 0.00 2.90
468 968 2.429058 CTCATCCGCCCCATCAGG 59.571 66.667 0.00 0.00 0.00 3.86
509 1009 1.341482 TGTGAGTGGCCTTTGGTTTCA 60.341 47.619 3.32 0.00 0.00 2.69
519 1019 1.821136 CTTTGGTTTCATCCCCTGCTC 59.179 52.381 0.00 0.00 0.00 4.26
524 1024 1.281925 TTTCATCCCCTGCTCCTCCC 61.282 60.000 0.00 0.00 0.00 4.30
543 1043 3.478274 CCTCCTCCCTCCTGCTGC 61.478 72.222 0.00 0.00 0.00 5.25
547 1047 4.527583 CTCCCTCCTGCTGCGCTC 62.528 72.222 9.73 0.28 0.00 5.03
626 1345 2.676471 GCACATTCACGGCCCCTT 60.676 61.111 0.00 0.00 0.00 3.95
630 1353 0.893727 ACATTCACGGCCCCTTCAAC 60.894 55.000 0.00 0.00 0.00 3.18
639 1362 2.526046 CCCCTTCAACGTCCCCTGT 61.526 63.158 0.00 0.00 0.00 4.00
647 1370 4.436998 CGTCCCCTGTCCTGCGTC 62.437 72.222 0.00 0.00 0.00 5.19
770 1503 3.575805 TCAGTTCTTGGGGAATTTTGCT 58.424 40.909 0.00 0.00 36.24 3.91
772 1505 2.899900 AGTTCTTGGGGAATTTTGCTCC 59.100 45.455 0.00 0.00 36.24 4.70
773 1506 2.899900 GTTCTTGGGGAATTTTGCTCCT 59.100 45.455 0.00 0.00 36.24 3.69
776 1511 2.692709 TGGGGAATTTTGCTCCTTCA 57.307 45.000 0.00 0.00 33.11 3.02
800 1540 3.322211 TCTTGATTCGCTCCGGTTTTA 57.678 42.857 0.00 0.00 0.00 1.52
802 1542 4.258543 TCTTGATTCGCTCCGGTTTTAAT 58.741 39.130 0.00 0.00 0.00 1.40
806 1546 1.361793 TCGCTCCGGTTTTAATTCCG 58.638 50.000 0.00 10.59 45.42 4.30
811 1551 3.591442 CGGTTTTAATTCCGGCGAC 57.409 52.632 9.30 0.00 42.61 5.19
813 1553 1.456296 GGTTTTAATTCCGGCGACCT 58.544 50.000 9.30 0.00 0.00 3.85
855 1608 2.005451 CCTCCGCATTCTGTTTCTGAG 58.995 52.381 0.00 0.00 0.00 3.35
929 1683 1.859703 CGATGCTCAGTCTCAATCTGC 59.140 52.381 0.00 0.00 33.48 4.26
946 1702 0.718343 TGCGTTGCTTGTTTTTGTGC 59.282 45.000 0.00 0.00 0.00 4.57
1008 1764 1.521457 GACCGCCGCAATGATGAGA 60.521 57.895 0.00 0.00 0.00 3.27
1366 2150 1.956477 GTGTTTGTTCTGTGGCCTGAT 59.044 47.619 3.32 0.00 0.00 2.90
1381 2167 7.059788 TGTGGCCTGATATGAGCTTATTTAAA 58.940 34.615 3.32 0.00 0.00 1.52
1593 2401 3.007635 GCACATAGTAGGGTGGTGTTTC 58.992 50.000 6.82 0.00 35.58 2.78
1806 2616 6.144175 GCTATCTGTACCTATTTCTCGACAC 58.856 44.000 0.00 0.00 0.00 3.67
1846 2656 6.590677 GGTGTTGTTCAGAGAAAGGTAGATAC 59.409 42.308 0.00 0.00 0.00 2.24
1847 2657 6.308282 GTGTTGTTCAGAGAAAGGTAGATACG 59.692 42.308 0.00 0.00 0.00 3.06
1848 2658 4.995124 TGTTCAGAGAAAGGTAGATACGC 58.005 43.478 0.00 0.00 0.00 4.42
1849 2659 4.705507 TGTTCAGAGAAAGGTAGATACGCT 59.294 41.667 0.00 0.00 0.00 5.07
1850 2660 5.185249 TGTTCAGAGAAAGGTAGATACGCTT 59.815 40.000 0.00 0.00 0.00 4.68
1851 2661 5.916661 TCAGAGAAAGGTAGATACGCTTT 57.083 39.130 6.31 6.31 32.92 3.51
1852 2662 6.282199 TCAGAGAAAGGTAGATACGCTTTT 57.718 37.500 7.46 0.00 31.50 2.27
1853 2663 7.400599 TCAGAGAAAGGTAGATACGCTTTTA 57.599 36.000 7.46 0.00 31.50 1.52
1854 2664 7.481642 TCAGAGAAAGGTAGATACGCTTTTAG 58.518 38.462 7.46 0.00 31.50 1.85
1855 2665 7.122353 TCAGAGAAAGGTAGATACGCTTTTAGT 59.878 37.037 7.46 0.00 31.50 2.24
1856 2666 8.404000 CAGAGAAAGGTAGATACGCTTTTAGTA 58.596 37.037 7.46 0.00 31.50 1.82
1857 2667 9.134055 AGAGAAAGGTAGATACGCTTTTAGTAT 57.866 33.333 7.46 0.00 37.49 2.12
1858 2668 9.182933 GAGAAAGGTAGATACGCTTTTAGTATG 57.817 37.037 7.46 0.00 35.19 2.39
1859 2669 8.910944 AGAAAGGTAGATACGCTTTTAGTATGA 58.089 33.333 7.46 0.00 35.19 2.15
1893 2703 8.035394 TGATGTTGTTCAGAGAAAGGTAGATAC 58.965 37.037 0.00 0.00 0.00 2.24
1934 2744 9.301153 GTGTAAACCCAAATATTAGAATGCTTG 57.699 33.333 0.00 0.00 0.00 4.01
2105 3006 1.725641 TGTGACAAGCGGATGATGAC 58.274 50.000 0.00 0.00 0.00 3.06
2132 3033 0.179006 GGATGAGGGCTGGTTGGATC 60.179 60.000 0.00 0.00 0.00 3.36
2141 3042 3.282885 GGCTGGTTGGATCCTTCTAAAG 58.717 50.000 14.23 4.51 0.00 1.85
2279 3258 4.722279 CCTTCCTTCTTATACCCCTTGAGT 59.278 45.833 0.00 0.00 0.00 3.41
2350 3329 8.184192 CCAATTTGTGTATACCTTGATTCAGAC 58.816 37.037 0.00 0.00 0.00 3.51
2389 3368 4.481930 TTCAGAAAAACCATACTGCACG 57.518 40.909 0.00 0.00 0.00 5.34
2403 3383 6.402550 CCATACTGCACGATTATGCTATTTCC 60.403 42.308 0.00 0.00 46.28 3.13
2706 3687 6.208204 AGCTTTTTAGCACATGTTCTTCTGAT 59.792 34.615 2.60 0.00 37.25 2.90
2737 3718 4.375272 CCATGTAAGCGTCTCAATGAGAT 58.625 43.478 16.68 2.74 40.98 2.75
2792 3773 6.099413 TCTCCTATCATGCATGACTTTCTCTT 59.901 38.462 30.92 15.18 40.03 2.85
2833 3814 2.093783 GGCGGATTTCAAAGTACAGACG 59.906 50.000 0.00 0.00 0.00 4.18
2859 3840 6.314917 ACTTCTGTTTTTATGGACCTTGGAT 58.685 36.000 0.00 0.00 0.00 3.41
2968 3949 8.321353 TCACAGAATATAATGACCACTTTGAGT 58.679 33.333 0.00 0.00 0.00 3.41
3005 3986 3.117663 TCTGTGGTAAGCTTTTCCCACTT 60.118 43.478 28.28 0.11 46.02 3.16
3006 3987 2.955660 TGTGGTAAGCTTTTCCCACTTG 59.044 45.455 28.28 0.00 46.02 3.16
3018 3999 4.360951 TTCCCACTTGTTCGGTTTATCT 57.639 40.909 0.00 0.00 0.00 1.98
3117 4098 5.047021 GCCTTTCTGAATTTCCTTAGCCTTT 60.047 40.000 0.00 0.00 0.00 3.11
3251 4232 6.727824 AGTTTTTAATGAGTCATCTCCACG 57.272 37.500 5.98 0.00 39.75 4.94
3271 4252 7.210174 TCCACGATTTCTATGACTAATCCTTG 58.790 38.462 0.00 0.00 0.00 3.61
3289 4270 8.611051 AATCCTTGTATATATGTACTCCCTCC 57.389 38.462 10.53 0.00 0.00 4.30
3290 4271 6.185511 TCCTTGTATATATGTACTCCCTCCG 58.814 44.000 10.53 0.00 0.00 4.63
3291 4272 5.950549 CCTTGTATATATGTACTCCCTCCGT 59.049 44.000 10.53 0.00 0.00 4.69
3292 4273 6.095160 CCTTGTATATATGTACTCCCTCCGTC 59.905 46.154 10.53 0.00 0.00 4.79
3293 4274 5.503927 TGTATATATGTACTCCCTCCGTCC 58.496 45.833 10.53 0.00 0.00 4.79
3294 4275 1.906990 ATATGTACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
3295 4276 0.179009 TATGTACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
3296 4277 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
3297 4278 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3298 4279 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3299 4280 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3300 4281 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3301 4282 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3302 4283 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3303 4284 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3304 4285 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3305 4286 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3306 4287 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3307 4288 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3308 4289 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3309 4290 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3310 4291 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3311 4292 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3312 4293 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3313 4294 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3314 4295 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3315 4296 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3316 4297 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
3317 4298 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
3318 4299 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
3319 4300 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
3325 4306 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
3326 4307 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
3327 4308 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
3328 4309 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
3329 4310 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
3330 4311 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
3331 4312 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
3332 4313 8.873144 CATCAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
3333 4314 8.477419 TCAAAATGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
3334 4315 8.288812 TCAAAATGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
3335 4316 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
3336 4317 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
3337 4318 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
3338 4319 7.554959 TGGATAAAAGGGGATGTATCTAGAC 57.445 40.000 0.00 0.00 0.00 2.59
3339 4320 7.079700 TGGATAAAAGGGGATGTATCTAGACA 58.920 38.462 0.00 0.00 0.00 3.41
3340 4321 7.739444 TGGATAAAAGGGGATGTATCTAGACAT 59.261 37.037 0.00 0.00 42.82 3.06
3341 4322 9.268282 GGATAAAAGGGGATGTATCTAGACATA 57.732 37.037 0.00 0.00 40.18 2.29
3348 4329 9.845214 AGGGGATGTATCTAGACATATTTTAGT 57.155 33.333 0.00 0.00 40.18 2.24
3382 4363 9.643693 ACATCTGTTTTTATCCATTTTGATGAC 57.356 29.630 0.00 0.00 33.85 3.06
3383 4364 9.642327 CATCTGTTTTTATCCATTTTGATGACA 57.358 29.630 0.00 0.00 32.05 3.58
3385 4366 9.695526 TCTGTTTTTATCCATTTTGATGACAAG 57.304 29.630 0.00 0.00 37.32 3.16
3386 4367 9.480053 CTGTTTTTATCCATTTTGATGACAAGT 57.520 29.630 0.00 0.00 37.32 3.16
3393 4374 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
3394 4375 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
3395 4376 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3396 4377 7.975616 CCATTTTGATGACAAGTATTTTCGGAT 59.024 33.333 0.00 0.00 37.32 4.18
3397 4378 8.800972 CATTTTGATGACAAGTATTTTCGGATG 58.199 33.333 0.00 0.00 37.32 3.51
3398 4379 6.435430 TTGATGACAAGTATTTTCGGATGG 57.565 37.500 0.00 0.00 0.00 3.51
3399 4380 5.739959 TGATGACAAGTATTTTCGGATGGA 58.260 37.500 0.00 0.00 0.00 3.41
3400 4381 5.817296 TGATGACAAGTATTTTCGGATGGAG 59.183 40.000 0.00 0.00 0.00 3.86
3401 4382 4.513442 TGACAAGTATTTTCGGATGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
3402 4383 3.877508 GACAAGTATTTTCGGATGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3403 4384 3.521937 ACAAGTATTTTCGGATGGAGGGA 59.478 43.478 0.00 0.00 0.00 4.20
3404 4385 4.130118 CAAGTATTTTCGGATGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
3405 4386 3.385115 AGTATTTTCGGATGGAGGGAGT 58.615 45.455 0.00 0.00 0.00 3.85
3406 4387 4.553678 AGTATTTTCGGATGGAGGGAGTA 58.446 43.478 0.00 0.00 0.00 2.59
3539 4548 9.665719 TCTGAACATGAAGTTAGTGCAAATATA 57.334 29.630 0.00 0.00 41.51 0.86
3579 4588 8.915871 TCAATAAGCAACAAATGAAATCTAGC 57.084 30.769 0.00 0.00 0.00 3.42
3730 4743 8.493787 AAGGATATATAATATTCCCTCCGTCC 57.506 38.462 0.00 0.00 0.00 4.79
3731 4744 7.017531 AGGATATATAATATTCCCTCCGTCCC 58.982 42.308 0.00 0.00 0.00 4.46
3732 4745 6.785963 GGATATATAATATTCCCTCCGTCCCA 59.214 42.308 0.00 0.00 0.00 4.37
3733 4746 7.291651 GGATATATAATATTCCCTCCGTCCCAA 59.708 40.741 0.00 0.00 0.00 4.12
3734 4747 6.963117 ATATAATATTCCCTCCGTCCCAAA 57.037 37.500 0.00 0.00 0.00 3.28
3735 4748 5.656549 ATAATATTCCCTCCGTCCCAAAA 57.343 39.130 0.00 0.00 0.00 2.44
3736 4749 4.536295 AATATTCCCTCCGTCCCAAAAT 57.464 40.909 0.00 0.00 0.00 1.82
3737 4750 5.656549 AATATTCCCTCCGTCCCAAAATA 57.343 39.130 0.00 0.00 0.00 1.40
3738 4751 5.656549 ATATTCCCTCCGTCCCAAAATAA 57.343 39.130 0.00 0.00 0.00 1.40
3739 4752 3.359695 TTCCCTCCGTCCCAAAATAAG 57.640 47.619 0.00 0.00 0.00 1.73
3740 4753 2.271777 TCCCTCCGTCCCAAAATAAGT 58.728 47.619 0.00 0.00 0.00 2.24
3741 4754 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3742 4755 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3743 4756 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3744 4757 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3745 4758 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3746 4759 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3747 4760 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3748 4761 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
3749 4762 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
3750 4763 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
3751 4764 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
3752 4765 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
3753 4766 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
3754 4767 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
3755 4768 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
3756 4769 9.167311 CCAAAATAAGTGTCTCAAGCTTAGTAT 57.833 33.333 0.00 0.00 0.00 2.12
3763 4776 8.764524 AGTGTCTCAAGCTTAGTATAACTTTG 57.235 34.615 0.00 0.00 0.00 2.77
3764 4777 8.368668 AGTGTCTCAAGCTTAGTATAACTTTGT 58.631 33.333 0.00 0.00 0.00 2.83
3765 4778 9.635520 GTGTCTCAAGCTTAGTATAACTTTGTA 57.364 33.333 0.00 0.00 0.00 2.41
3766 4779 9.635520 TGTCTCAAGCTTAGTATAACTTTGTAC 57.364 33.333 0.00 0.00 0.00 2.90
3767 4780 9.857957 GTCTCAAGCTTAGTATAACTTTGTACT 57.142 33.333 0.00 4.13 38.43 2.73
3791 4804 9.915629 ACTAGAGTTAGTACAAAATTGAGACAG 57.084 33.333 0.00 0.00 38.35 3.51
3792 4805 9.915629 CTAGAGTTAGTACAAAATTGAGACAGT 57.084 33.333 0.00 0.00 0.00 3.55
3800 4813 9.965824 AGTACAAAATTGAGACAGTTATTTTGG 57.034 29.630 18.01 5.93 45.43 3.28
3801 4814 9.191995 GTACAAAATTGAGACAGTTATTTTGGG 57.808 33.333 18.01 1.54 45.43 4.12
3802 4815 8.017418 ACAAAATTGAGACAGTTATTTTGGGA 57.983 30.769 18.01 0.00 45.43 4.37
3803 4816 7.926018 ACAAAATTGAGACAGTTATTTTGGGAC 59.074 33.333 18.01 0.00 45.43 4.46
3804 4817 5.880054 ATTGAGACAGTTATTTTGGGACG 57.120 39.130 0.00 0.00 0.00 4.79
3805 4818 3.670625 TGAGACAGTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3806 4819 3.325425 TGAGACAGTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3807 4820 3.933332 GAGACAGTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3808 4821 3.007635 GACAGTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3809 4822 2.290705 ACAGTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3810 4823 2.026636 CAGTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3811 4824 2.238898 AGTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3812 4825 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3813 4826 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3816 4829 1.512201 TTGGGACGGAGGGAGTAGGA 61.512 60.000 0.00 0.00 0.00 2.94
3923 4936 2.816087 CCTTTGTGCAATGCAGTCTAGT 59.184 45.455 8.73 0.00 40.08 2.57
3947 4960 4.315803 GGCGTATGCTTATACCACTGAAT 58.684 43.478 6.92 0.00 42.25 2.57
3962 4975 2.158652 ACTGAATATGCCTGCTGATGCT 60.159 45.455 0.00 0.00 40.48 3.79
3965 4978 0.769247 ATATGCCTGCTGATGCTCCA 59.231 50.000 0.00 0.00 40.48 3.86
4001 5014 4.795308 GCAAAGCAATATGAAGGCATCCTC 60.795 45.833 0.00 0.00 35.94 3.71
4044 5057 3.413105 AGGCAGAGAAGGAGAATAGGT 57.587 47.619 0.00 0.00 0.00 3.08
4064 5077 0.178992 TGGTCAAGGCCAGAAAGGTG 60.179 55.000 5.01 0.00 40.61 4.00
4090 5179 5.354513 GGCTCACCTTCTCAAAGTATAAACC 59.645 44.000 0.00 0.00 0.00 3.27
4096 5185 6.156429 ACCTTCTCAAAGTATAAACCGAGGAT 59.844 38.462 0.00 0.00 0.00 3.24
4144 5234 6.819284 TGCAAATGTTCTTCTTTCTTTCCAT 58.181 32.000 0.00 0.00 0.00 3.41
4381 5471 1.071987 CCAAGCAGTGTCTCCAGCA 59.928 57.895 0.00 0.00 0.00 4.41
4413 5503 3.681897 CAGAGGTGACAAGCTTGTATGAC 59.318 47.826 31.20 24.65 42.43 3.06
4449 5539 3.149196 CCACTACCACAACTTTGAGCAT 58.851 45.455 0.00 0.00 0.00 3.79
4743 5843 0.809385 TCGCCTACTTGTCCTCGAAG 59.191 55.000 0.00 0.00 0.00 3.79
4941 6044 7.390718 ACTGGAATTGGAGTTTGTATGAAGTAC 59.609 37.037 0.00 0.00 0.00 2.73
4943 6046 7.606456 TGGAATTGGAGTTTGTATGAAGTACTC 59.394 37.037 0.00 0.00 35.61 2.59
5040 6143 4.080526 AGGTTCTGTGTGTAGACTTGGTTT 60.081 41.667 0.00 0.00 0.00 3.27
5041 6144 4.035208 GGTTCTGTGTGTAGACTTGGTTTG 59.965 45.833 0.00 0.00 0.00 2.93
5042 6145 4.481368 TCTGTGTGTAGACTTGGTTTGT 57.519 40.909 0.00 0.00 0.00 2.83
5043 6146 4.839121 TCTGTGTGTAGACTTGGTTTGTT 58.161 39.130 0.00 0.00 0.00 2.83
5044 6147 5.250200 TCTGTGTGTAGACTTGGTTTGTTT 58.750 37.500 0.00 0.00 0.00 2.83
5045 6148 5.123186 TCTGTGTGTAGACTTGGTTTGTTTG 59.877 40.000 0.00 0.00 0.00 2.93
5046 6149 4.762765 TGTGTGTAGACTTGGTTTGTTTGT 59.237 37.500 0.00 0.00 0.00 2.83
5047 6150 5.938710 TGTGTGTAGACTTGGTTTGTTTGTA 59.061 36.000 0.00 0.00 0.00 2.41
5048 6151 6.128227 TGTGTGTAGACTTGGTTTGTTTGTAC 60.128 38.462 0.00 0.00 0.00 2.90
5049 6152 6.093082 GTGTGTAGACTTGGTTTGTTTGTACT 59.907 38.462 0.00 0.00 0.00 2.73
5050 6153 6.314400 TGTGTAGACTTGGTTTGTTTGTACTC 59.686 38.462 0.00 0.00 0.00 2.59
5051 6154 6.537660 GTGTAGACTTGGTTTGTTTGTACTCT 59.462 38.462 0.00 0.00 0.00 3.24
5052 6155 6.537301 TGTAGACTTGGTTTGTTTGTACTCTG 59.463 38.462 0.00 0.00 0.00 3.35
5060 6176 4.955925 TTGTTTGTACTCTGTGGTGTTG 57.044 40.909 0.00 0.00 0.00 3.33
5093 6209 6.550938 ATCAGTGATGTATTGAGACTTGGA 57.449 37.500 4.39 0.00 0.00 3.53
5106 6222 4.580167 TGAGACTTGGAATGGTTTGTGAAG 59.420 41.667 0.00 0.00 0.00 3.02
5110 6226 4.099419 ACTTGGAATGGTTTGTGAAGTTCC 59.901 41.667 0.00 0.00 36.52 3.62
5127 6243 2.744202 GTTCCTTATGCTGTGGTCTGTG 59.256 50.000 0.00 0.00 0.00 3.66
5128 6244 1.278985 TCCTTATGCTGTGGTCTGTGG 59.721 52.381 0.00 0.00 0.00 4.17
5129 6245 1.089920 CTTATGCTGTGGTCTGTGGC 58.910 55.000 0.00 0.00 0.00 5.01
5130 6246 0.692476 TTATGCTGTGGTCTGTGGCT 59.308 50.000 0.00 0.00 0.00 4.75
5131 6247 0.250234 TATGCTGTGGTCTGTGGCTC 59.750 55.000 0.00 0.00 0.00 4.70
5132 6248 1.771783 ATGCTGTGGTCTGTGGCTCA 61.772 55.000 0.00 0.00 0.00 4.26
5136 6252 1.538512 CTGTGGTCTGTGGCTCATTTG 59.461 52.381 0.00 0.00 0.00 2.32
5137 6253 0.242017 GTGGTCTGTGGCTCATTTGC 59.758 55.000 0.00 0.00 0.00 3.68
5138 6254 0.111061 TGGTCTGTGGCTCATTTGCT 59.889 50.000 0.00 0.00 0.00 3.91
5140 6256 1.200948 GGTCTGTGGCTCATTTGCTTC 59.799 52.381 0.00 0.00 0.00 3.86
5141 6257 1.881973 GTCTGTGGCTCATTTGCTTCA 59.118 47.619 0.00 0.00 0.00 3.02
5142 6258 1.881973 TCTGTGGCTCATTTGCTTCAC 59.118 47.619 0.00 0.00 0.00 3.18
5143 6259 1.610038 CTGTGGCTCATTTGCTTCACA 59.390 47.619 0.00 0.00 35.20 3.58
5146 6262 2.035066 GTGGCTCATTTGCTTCACACTT 59.965 45.455 0.00 0.00 0.00 3.16
5148 6264 2.608752 GGCTCATTTGCTTCACACTTGG 60.609 50.000 0.00 0.00 0.00 3.61
5150 6266 3.243501 GCTCATTTGCTTCACACTTGGAA 60.244 43.478 0.00 0.00 0.00 3.53
5151 6267 4.293415 CTCATTTGCTTCACACTTGGAAC 58.707 43.478 0.00 0.00 0.00 3.62
5152 6268 3.068024 TCATTTGCTTCACACTTGGAACC 59.932 43.478 0.00 0.00 0.00 3.62
5153 6269 2.435372 TTGCTTCACACTTGGAACCT 57.565 45.000 0.00 0.00 0.00 3.50
5154 6270 1.967319 TGCTTCACACTTGGAACCTC 58.033 50.000 0.00 0.00 0.00 3.85
5155 6271 1.211703 TGCTTCACACTTGGAACCTCA 59.788 47.619 0.00 0.00 0.00 3.86
5156 6272 1.876156 GCTTCACACTTGGAACCTCAG 59.124 52.381 0.00 0.00 0.00 3.35
5157 6273 2.485479 GCTTCACACTTGGAACCTCAGA 60.485 50.000 0.00 0.00 0.00 3.27
5158 6274 2.910688 TCACACTTGGAACCTCAGAC 57.089 50.000 0.00 0.00 0.00 3.51
5159 6275 2.398588 TCACACTTGGAACCTCAGACT 58.601 47.619 0.00 0.00 0.00 3.24
5160 6276 2.103094 TCACACTTGGAACCTCAGACTG 59.897 50.000 0.00 0.00 0.00 3.51
5185 6301 4.142093 GGCATATTCCATTTGCTTCACACT 60.142 41.667 0.00 0.00 37.38 3.55
5188 6304 2.798976 TCCATTTGCTTCACACTTGC 57.201 45.000 0.00 0.00 0.00 4.01
5190 6306 2.034939 TCCATTTGCTTCACACTTGCAG 59.965 45.455 0.00 0.00 38.01 4.41
5213 6329 2.004733 GCCAATTTGCAAGAAGGCATC 58.995 47.619 24.46 4.22 44.48 3.91
5215 6331 1.657094 CAATTTGCAAGAAGGCATCGC 59.343 47.619 0.00 0.00 44.48 4.58
5228 6344 3.782889 GGCATCGCCTTTTACTTGATT 57.217 42.857 0.00 0.00 46.69 2.57
5232 6348 4.202050 GCATCGCCTTTTACTTGATTGGAT 60.202 41.667 0.00 0.00 0.00 3.41
5245 6361 5.422331 ACTTGATTGGATACTCGAGGAAAGA 59.578 40.000 18.41 0.00 37.61 2.52
5253 6369 5.235401 GGATACTCGAGGAAAGAGAATTTGC 59.765 44.000 18.41 0.00 38.97 3.68
5257 6373 5.049129 ACTCGAGGAAAGAGAATTTGCTTTG 60.049 40.000 18.41 0.60 38.97 2.77
5263 6379 4.446994 AAGAGAATTTGCTTTGGCTAGC 57.553 40.909 6.04 6.04 41.59 3.42
5271 6387 3.417069 TGCTTTGGCTAGCTCTTTGTA 57.583 42.857 15.72 0.00 41.76 2.41
5274 6390 4.156556 TGCTTTGGCTAGCTCTTTGTAATG 59.843 41.667 15.72 3.27 41.76 1.90
5275 6391 4.396166 GCTTTGGCTAGCTCTTTGTAATGA 59.604 41.667 15.72 0.00 38.15 2.57
5276 6392 5.448360 GCTTTGGCTAGCTCTTTGTAATGAG 60.448 44.000 15.72 3.82 38.15 2.90
5277 6393 5.420725 TTGGCTAGCTCTTTGTAATGAGA 57.579 39.130 15.72 0.00 33.39 3.27
5278 6394 5.016051 TGGCTAGCTCTTTGTAATGAGAG 57.984 43.478 15.72 0.00 41.80 3.20
5279 6395 4.467795 TGGCTAGCTCTTTGTAATGAGAGT 59.532 41.667 15.72 1.65 41.13 3.24
5280 6396 5.656859 TGGCTAGCTCTTTGTAATGAGAGTA 59.343 40.000 15.72 2.51 41.13 2.59
5282 6398 5.689961 GCTAGCTCTTTGTAATGAGAGTAGC 59.310 44.000 7.70 17.03 41.13 3.58
5284 6400 6.042638 AGCTCTTTGTAATGAGAGTAGCAA 57.957 37.500 10.61 0.00 41.13 3.91
5286 6402 6.760770 AGCTCTTTGTAATGAGAGTAGCAATC 59.239 38.462 10.61 0.00 41.13 2.67
5287 6403 6.018343 GCTCTTTGTAATGAGAGTAGCAATCC 60.018 42.308 10.61 0.00 41.13 3.01
5288 6404 7.187824 TCTTTGTAATGAGAGTAGCAATCCT 57.812 36.000 0.00 0.00 0.00 3.24
5289 6405 7.044181 TCTTTGTAATGAGAGTAGCAATCCTG 58.956 38.462 0.00 0.00 0.00 3.86
5290 6406 5.282055 TGTAATGAGAGTAGCAATCCTGG 57.718 43.478 0.00 0.00 0.00 4.45
5291 6407 4.962362 TGTAATGAGAGTAGCAATCCTGGA 59.038 41.667 0.00 0.00 0.00 3.86
5292 6408 4.686191 AATGAGAGTAGCAATCCTGGAG 57.314 45.455 1.52 0.00 0.00 3.86
5333 6458 9.672673 AGACAATTACAGATATTACAAAGCACT 57.327 29.630 0.00 0.00 0.00 4.40
5340 6465 8.165239 ACAGATATTACAAAGCACTTCAAACA 57.835 30.769 0.00 0.00 0.00 2.83
5341 6466 8.629158 ACAGATATTACAAAGCACTTCAAACAA 58.371 29.630 0.00 0.00 0.00 2.83
5342 6467 9.462174 CAGATATTACAAAGCACTTCAAACAAA 57.538 29.630 0.00 0.00 0.00 2.83
5347 6472 6.093532 ACAAAGCACTTCAAACAAAAATCG 57.906 33.333 0.00 0.00 0.00 3.34
5360 6485 9.168451 TCAAACAAAAATCGAAGCATAGGTATA 57.832 29.630 0.00 0.00 0.00 1.47
5361 6486 9.438291 CAAACAAAAATCGAAGCATAGGTATAG 57.562 33.333 0.00 0.00 0.00 1.31
5407 6532 9.613428 TTGACAAATTGTAATATACTCCCTCTG 57.387 33.333 0.00 0.00 0.00 3.35
5408 6533 8.768397 TGACAAATTGTAATATACTCCCTCTGT 58.232 33.333 0.00 0.00 0.00 3.41
5424 6549 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
5425 6550 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
5426 6551 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
5427 6552 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
5428 6553 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
5473 6598 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
5474 6599 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
5475 6600 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
5476 6601 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
5477 6602 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
5478 6603 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
5479 6604 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
5480 6605 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
5481 6606 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
5484 6609 9.812347 TTATATTAGTTTACGGAGGGAGTATCA 57.188 33.333 0.00 0.00 36.25 2.15
5485 6610 8.716674 ATATTAGTTTACGGAGGGAGTATCAA 57.283 34.615 0.00 0.00 36.25 2.57
5486 6611 6.855763 TTAGTTTACGGAGGGAGTATCAAA 57.144 37.500 0.00 0.00 36.25 2.69
5487 6612 5.340439 AGTTTACGGAGGGAGTATCAAAG 57.660 43.478 0.00 0.00 36.25 2.77
5488 6613 5.021458 AGTTTACGGAGGGAGTATCAAAGA 58.979 41.667 0.00 0.00 36.25 2.52
5504 6629 8.494433 AGTATCAAAGAAGCATTATACCTCCAA 58.506 33.333 0.00 0.00 0.00 3.53
5505 6630 9.289782 GTATCAAAGAAGCATTATACCTCCAAT 57.710 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 4.156556 TGGACTAATCATGCTGTCAAAAGC 59.843 41.667 0.00 0.00 43.82 3.51
66 68 5.690865 CTGGAATTATTAGGTTGGGTGCTA 58.309 41.667 0.00 0.00 0.00 3.49
93 95 1.144913 CCAAGACCTTTCAACTCCCCA 59.855 52.381 0.00 0.00 0.00 4.96
158 621 8.360390 ACATTTATTTGTCCTCCAGAAAAGTTC 58.640 33.333 0.00 0.00 0.00 3.01
168 631 7.817478 CCCACTAAAAACATTTATTTGTCCTCC 59.183 37.037 0.00 0.00 0.00 4.30
207 671 6.048509 TCTTTCATTTTCCTCTTTGCCAAAC 58.951 36.000 0.00 0.00 0.00 2.93
225 689 6.238703 GCAAAGCCCAAATGATTTTTCTTTCA 60.239 34.615 6.08 0.00 0.00 2.69
226 690 6.144854 GCAAAGCCCAAATGATTTTTCTTTC 58.855 36.000 6.08 1.37 0.00 2.62
227 691 5.277925 CGCAAAGCCCAAATGATTTTTCTTT 60.278 36.000 0.00 0.00 0.00 2.52
228 692 4.213906 CGCAAAGCCCAAATGATTTTTCTT 59.786 37.500 0.00 0.00 0.00 2.52
229 693 3.747529 CGCAAAGCCCAAATGATTTTTCT 59.252 39.130 0.00 0.00 0.00 2.52
251 715 6.713450 TCACATTTTACTACTCCTCCAAAACC 59.287 38.462 0.00 0.00 0.00 3.27
283 764 2.364317 TCCTTCCCCAGAGCCTCG 60.364 66.667 0.00 0.00 0.00 4.63
287 768 1.631071 CCTTCCTCCTTCCCCAGAGC 61.631 65.000 0.00 0.00 0.00 4.09
288 769 0.985490 CCCTTCCTCCTTCCCCAGAG 60.985 65.000 0.00 0.00 0.00 3.35
388 888 1.385206 AGAGAGATTGGGGGAGGGC 60.385 63.158 0.00 0.00 0.00 5.19
389 889 0.267356 AGAGAGAGATTGGGGGAGGG 59.733 60.000 0.00 0.00 0.00 4.30
402 902 3.237746 GTGATGGATGGATGGAGAGAGA 58.762 50.000 0.00 0.00 0.00 3.10
410 910 2.486727 CCTGTGAGGTGATGGATGGATG 60.487 54.545 0.00 0.00 0.00 3.51
411 911 1.773052 CCTGTGAGGTGATGGATGGAT 59.227 52.381 0.00 0.00 0.00 3.41
412 912 1.206878 CCTGTGAGGTGATGGATGGA 58.793 55.000 0.00 0.00 0.00 3.41
414 914 0.253894 TGCCTGTGAGGTGATGGATG 59.746 55.000 0.00 0.00 37.80 3.51
415 915 0.254178 GTGCCTGTGAGGTGATGGAT 59.746 55.000 0.00 0.00 37.80 3.41
416 916 1.126948 TGTGCCTGTGAGGTGATGGA 61.127 55.000 0.00 0.00 37.80 3.41
509 1009 4.523282 GGGGGAGGAGCAGGGGAT 62.523 72.222 0.00 0.00 0.00 3.85
524 1024 4.101077 AGCAGGAGGGAGGAGGGG 62.101 72.222 0.00 0.00 0.00 4.79
621 1340 2.351276 CAGGGGACGTTGAAGGGG 59.649 66.667 0.00 0.00 0.00 4.79
623 1342 1.003718 GGACAGGGGACGTTGAAGG 60.004 63.158 0.00 0.00 0.00 3.46
625 1344 1.752198 CAGGACAGGGGACGTTGAA 59.248 57.895 0.00 0.00 0.00 2.69
626 1345 2.879233 GCAGGACAGGGGACGTTGA 61.879 63.158 0.00 0.00 0.00 3.18
630 1353 4.436998 GACGCAGGACAGGGGACG 62.437 72.222 0.00 0.00 0.00 4.79
671 1394 2.267642 CCACGGGGATTTCAGCGA 59.732 61.111 0.00 0.00 35.59 4.93
770 1503 3.997021 GAGCGAATCAAGAAACTGAAGGA 59.003 43.478 0.00 0.00 0.00 3.36
772 1505 3.181526 CGGAGCGAATCAAGAAACTGAAG 60.182 47.826 0.00 0.00 0.00 3.02
773 1506 2.736721 CGGAGCGAATCAAGAAACTGAA 59.263 45.455 0.00 0.00 0.00 3.02
776 1511 1.002087 ACCGGAGCGAATCAAGAAACT 59.998 47.619 9.46 0.00 0.00 2.66
800 1540 0.970937 TGAGAGAGGTCGCCGGAATT 60.971 55.000 5.05 0.00 0.00 2.17
802 1542 2.035155 TGAGAGAGGTCGCCGGAA 59.965 61.111 5.05 0.00 0.00 4.30
806 1546 2.363147 AGGGTGAGAGAGGTCGCC 60.363 66.667 0.00 0.00 45.11 5.54
808 1548 1.326213 ATGCAGGGTGAGAGAGGTCG 61.326 60.000 0.00 0.00 0.00 4.79
809 1549 0.908198 AATGCAGGGTGAGAGAGGTC 59.092 55.000 0.00 0.00 0.00 3.85
810 1550 0.908198 GAATGCAGGGTGAGAGAGGT 59.092 55.000 0.00 0.00 0.00 3.85
811 1551 0.179936 GGAATGCAGGGTGAGAGAGG 59.820 60.000 0.00 0.00 0.00 3.69
813 1553 1.274703 GGGGAATGCAGGGTGAGAGA 61.275 60.000 0.00 0.00 0.00 3.10
929 1683 0.297230 CGGCACAAAAACAAGCAACG 59.703 50.000 0.00 0.00 0.00 4.10
946 1702 1.428219 CTGCTGCAATCAAGAGCGG 59.572 57.895 3.02 0.00 40.08 5.52
1008 1764 2.649312 TCCCTCATGGTGGTTCTTGAAT 59.351 45.455 0.00 0.00 34.77 2.57
1107 1866 2.122729 TACAGCAGCTGGGACCCT 59.877 61.111 26.38 6.77 35.51 4.34
1366 2150 7.067372 AGCATGCACAGTTTAAATAAGCTCATA 59.933 33.333 21.98 0.00 0.00 2.15
1593 2401 9.249053 TCTTGTAATAGCCCTATTATCTGAGAG 57.751 37.037 10.10 4.62 39.40 3.20
1806 2616 5.514274 ACAACACCAAATTTGTCTACCTG 57.486 39.130 16.73 8.55 29.75 4.00
1846 2656 9.128107 ACATCAAATTTGTTCATACTAAAAGCG 57.872 29.630 17.47 0.00 0.00 4.68
1859 2669 9.090692 CTTTCTCTGAACAACATCAAATTTGTT 57.909 29.630 17.47 7.00 46.24 2.83
1869 2679 7.036220 CGTATCTACCTTTCTCTGAACAACAT 58.964 38.462 0.00 0.00 0.00 2.71
1893 2703 7.863666 TGGGTTTACACTTCATACTAAAAACG 58.136 34.615 0.00 0.00 0.00 3.60
1934 2744 1.193203 CTCACATATTCACGATGCGGC 59.807 52.381 0.00 0.00 0.00 6.53
1940 2750 8.942338 AAGCTAATTAACTCACATATTCACGA 57.058 30.769 0.00 0.00 0.00 4.35
2016 2910 9.516546 CCCTATATTTCCCTTACCAAAGATAAC 57.483 37.037 0.00 0.00 34.37 1.89
2141 3042 4.150897 TGGCATCCACATAAGACCTTAC 57.849 45.455 0.00 0.00 0.00 2.34
2244 3145 4.625607 AGAAGGAAGGTCACAGGTTTAG 57.374 45.455 0.00 0.00 0.00 1.85
2245 3146 6.697641 ATAAGAAGGAAGGTCACAGGTTTA 57.302 37.500 0.00 0.00 0.00 2.01
2248 3227 4.470304 GGTATAAGAAGGAAGGTCACAGGT 59.530 45.833 0.00 0.00 0.00 4.00
2389 3368 7.658179 TTCTCATGTCGGAAATAGCATAATC 57.342 36.000 0.00 0.00 0.00 1.75
2403 3383 2.226330 TGGGGTGTTTTTCTCATGTCG 58.774 47.619 0.00 0.00 0.00 4.35
2448 3428 3.788333 AATGTCAGAATTTCCATGGCG 57.212 42.857 6.96 0.00 0.00 5.69
2500 3480 0.602638 TTGGTGTCATGCCACGACTC 60.603 55.000 0.03 0.00 36.16 3.36
2544 3524 4.592942 AGCATCAGATTTTCTACAAGGCA 58.407 39.130 0.00 0.00 0.00 4.75
2574 3554 5.355596 AGCATAAGTTTCAGAAGGATCGAG 58.644 41.667 0.00 0.00 0.00 4.04
2706 3687 4.956085 AGACGCTTACATGGCATTACATA 58.044 39.130 0.00 0.00 0.00 2.29
2792 3773 3.753272 GCCAGTCATTCAAGTTGCTAGAA 59.247 43.478 0.00 0.00 0.00 2.10
2833 3814 6.713450 TCCAAGGTCCATAAAAACAGAAGTAC 59.287 38.462 0.00 0.00 0.00 2.73
2859 3840 4.099727 CCCAAATGCACCATCAATCACATA 59.900 41.667 0.00 0.00 0.00 2.29
3005 3986 9.051679 CCATTATTCATACAGATAAACCGAACA 57.948 33.333 0.00 0.00 0.00 3.18
3006 3987 9.052759 ACCATTATTCATACAGATAAACCGAAC 57.947 33.333 0.00 0.00 0.00 3.95
3117 4098 4.290711 TCAGAAGGCATTGATGAACTCA 57.709 40.909 0.00 0.00 0.00 3.41
3271 4252 4.574013 CGGACGGAGGGAGTACATATATAC 59.426 50.000 0.00 0.00 0.00 1.47
3279 4260 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
3280 4261 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3281 4262 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3282 4263 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3283 4264 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3284 4265 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3285 4266 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3286 4267 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3287 4268 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3288 4269 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3289 4270 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3290 4271 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3291 4272 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
3292 4273 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
3293 4274 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
3299 4280 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
3300 4281 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
3301 4282 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
3302 4283 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
3303 4284 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
3304 4285 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
3305 4286 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
3306 4287 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
3307 4288 9.093458 GATACATCCCCTTTTATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
3308 4289 8.288812 AGATACATCCCCTTTTATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
3309 4290 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
3310 4291 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
3311 4292 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
3312 4293 8.606830 GTCTAGATACATCCCCTTTTATCCATT 58.393 37.037 0.00 0.00 0.00 3.16
3313 4294 7.739444 TGTCTAGATACATCCCCTTTTATCCAT 59.261 37.037 0.00 0.00 0.00 3.41
3314 4295 7.079700 TGTCTAGATACATCCCCTTTTATCCA 58.920 38.462 0.00 0.00 0.00 3.41
3315 4296 7.554959 TGTCTAGATACATCCCCTTTTATCC 57.445 40.000 0.00 0.00 0.00 2.59
3322 4303 9.845214 ACTAAAATATGTCTAGATACATCCCCT 57.155 33.333 0.00 0.00 40.52 4.79
3356 4337 9.643693 GTCATCAAAATGGATAAAAACAGATGT 57.356 29.630 0.00 0.00 33.42 3.06
3357 4338 9.642327 TGTCATCAAAATGGATAAAAACAGATG 57.358 29.630 0.00 0.00 33.42 2.90
3359 4340 9.695526 CTTGTCATCAAAATGGATAAAAACAGA 57.304 29.630 0.00 0.00 33.42 3.41
3360 4341 9.480053 ACTTGTCATCAAAATGGATAAAAACAG 57.520 29.630 0.00 0.00 33.42 3.16
3368 4349 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
3369 4350 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3370 4351 7.312154 TCCGAAAATACTTGTCATCAAAATGG 58.688 34.615 0.00 0.00 33.42 3.16
3371 4352 8.800972 CATCCGAAAATACTTGTCATCAAAATG 58.199 33.333 0.00 0.00 32.87 2.32
3372 4353 7.975616 CCATCCGAAAATACTTGTCATCAAAAT 59.024 33.333 0.00 0.00 32.87 1.82
3373 4354 7.175816 TCCATCCGAAAATACTTGTCATCAAAA 59.824 33.333 0.00 0.00 32.87 2.44
3374 4355 6.657117 TCCATCCGAAAATACTTGTCATCAAA 59.343 34.615 0.00 0.00 32.87 2.69
3375 4356 6.176896 TCCATCCGAAAATACTTGTCATCAA 58.823 36.000 0.00 0.00 0.00 2.57
3376 4357 5.739959 TCCATCCGAAAATACTTGTCATCA 58.260 37.500 0.00 0.00 0.00 3.07
3377 4358 5.237344 CCTCCATCCGAAAATACTTGTCATC 59.763 44.000 0.00 0.00 0.00 2.92
3378 4359 5.126067 CCTCCATCCGAAAATACTTGTCAT 58.874 41.667 0.00 0.00 0.00 3.06
3379 4360 4.513442 CCTCCATCCGAAAATACTTGTCA 58.487 43.478 0.00 0.00 0.00 3.58
3380 4361 3.877508 CCCTCCATCCGAAAATACTTGTC 59.122 47.826 0.00 0.00 0.00 3.18
3381 4362 3.521937 TCCCTCCATCCGAAAATACTTGT 59.478 43.478 0.00 0.00 0.00 3.16
3382 4363 4.130118 CTCCCTCCATCCGAAAATACTTG 58.870 47.826 0.00 0.00 0.00 3.16
3383 4364 3.780850 ACTCCCTCCATCCGAAAATACTT 59.219 43.478 0.00 0.00 0.00 2.24
3384 4365 3.385115 ACTCCCTCCATCCGAAAATACT 58.615 45.455 0.00 0.00 0.00 2.12
3385 4366 3.840124 ACTCCCTCCATCCGAAAATAC 57.160 47.619 0.00 0.00 0.00 1.89
3386 4367 4.553678 ACTACTCCCTCCATCCGAAAATA 58.446 43.478 0.00 0.00 0.00 1.40
3387 4368 3.385115 ACTACTCCCTCCATCCGAAAAT 58.615 45.455 0.00 0.00 0.00 1.82
3388 4369 2.829023 ACTACTCCCTCCATCCGAAAA 58.171 47.619 0.00 0.00 0.00 2.29
3389 4370 2.544844 ACTACTCCCTCCATCCGAAA 57.455 50.000 0.00 0.00 0.00 3.46
3390 4371 2.242965 TGTACTACTCCCTCCATCCGAA 59.757 50.000 0.00 0.00 0.00 4.30
3391 4372 1.848388 TGTACTACTCCCTCCATCCGA 59.152 52.381 0.00 0.00 0.00 4.55
3392 4373 2.158652 TCTGTACTACTCCCTCCATCCG 60.159 54.545 0.00 0.00 0.00 4.18
3393 4374 3.596940 TCTGTACTACTCCCTCCATCC 57.403 52.381 0.00 0.00 0.00 3.51
3394 4375 4.538738 AGTTCTGTACTACTCCCTCCATC 58.461 47.826 0.00 0.00 34.56 3.51
3395 4376 4.611564 AGTTCTGTACTACTCCCTCCAT 57.388 45.455 0.00 0.00 34.56 3.41
3396 4377 4.399483 AAGTTCTGTACTACTCCCTCCA 57.601 45.455 0.00 0.00 35.54 3.86
3397 4378 5.951148 ACTAAAGTTCTGTACTACTCCCTCC 59.049 44.000 0.00 0.00 35.54 4.30
3398 4379 6.095300 GGACTAAAGTTCTGTACTACTCCCTC 59.905 46.154 0.00 0.00 35.54 4.30
3399 4380 5.951148 GGACTAAAGTTCTGTACTACTCCCT 59.049 44.000 0.00 0.00 35.54 4.20
3400 4381 5.713861 TGGACTAAAGTTCTGTACTACTCCC 59.286 44.000 0.00 0.00 35.54 4.30
3401 4382 6.433716 ACTGGACTAAAGTTCTGTACTACTCC 59.566 42.308 0.00 0.00 34.49 3.85
3402 4383 7.040548 ACACTGGACTAAAGTTCTGTACTACTC 60.041 40.741 1.09 0.00 34.49 2.59
3403 4384 6.776603 ACACTGGACTAAAGTTCTGTACTACT 59.223 38.462 1.09 0.00 34.49 2.57
3404 4385 6.979465 ACACTGGACTAAAGTTCTGTACTAC 58.021 40.000 1.09 0.00 34.49 2.73
3405 4386 7.286087 TGAACACTGGACTAAAGTTCTGTACTA 59.714 37.037 0.00 0.00 39.33 1.82
3406 4387 6.097839 TGAACACTGGACTAAAGTTCTGTACT 59.902 38.462 0.00 0.00 39.33 2.73
3614 4626 5.840715 TGCAATTGCTATTCACAAACTTCA 58.159 33.333 29.37 1.93 42.66 3.02
3719 4732 2.645797 ACTTATTTTGGGACGGAGGGAA 59.354 45.455 0.00 0.00 0.00 3.97
3720 4733 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3721 4734 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3722 4735 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3723 4736 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3724 4737 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3725 4738 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3726 4739 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
3727 4740 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
3728 4741 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
3729 4742 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
3730 4743 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
3737 4750 9.209175 CAAAGTTATACTAAGCTTGAGACACTT 57.791 33.333 9.86 7.48 0.00 3.16
3738 4751 8.368668 ACAAAGTTATACTAAGCTTGAGACACT 58.631 33.333 9.86 1.30 0.00 3.55
3739 4752 8.535690 ACAAAGTTATACTAAGCTTGAGACAC 57.464 34.615 9.86 0.00 0.00 3.67
3740 4753 9.635520 GTACAAAGTTATACTAAGCTTGAGACA 57.364 33.333 9.86 0.00 0.00 3.41
3741 4754 9.857957 AGTACAAAGTTATACTAAGCTTGAGAC 57.142 33.333 9.86 0.00 29.70 3.36
3765 4778 9.915629 CTGTCTCAATTTTGTACTAACTCTAGT 57.084 33.333 0.00 0.00 41.43 2.57
3766 4779 9.915629 ACTGTCTCAATTTTGTACTAACTCTAG 57.084 33.333 0.00 0.00 0.00 2.43
3774 4787 9.965824 CCAAAATAACTGTCTCAATTTTGTACT 57.034 29.630 18.61 0.00 43.14 2.73
3775 4788 9.191995 CCCAAAATAACTGTCTCAATTTTGTAC 57.808 33.333 18.61 0.00 43.14 2.90
3776 4789 9.137459 TCCCAAAATAACTGTCTCAATTTTGTA 57.863 29.630 18.61 10.65 43.14 2.41
3777 4790 7.926018 GTCCCAAAATAACTGTCTCAATTTTGT 59.074 33.333 18.61 0.00 43.14 2.83
3778 4791 7.114811 CGTCCCAAAATAACTGTCTCAATTTTG 59.885 37.037 15.92 15.92 43.77 2.44
3779 4792 7.145323 CGTCCCAAAATAACTGTCTCAATTTT 58.855 34.615 0.00 0.00 33.07 1.82
3780 4793 6.294508 CCGTCCCAAAATAACTGTCTCAATTT 60.295 38.462 0.00 0.00 0.00 1.82
3781 4794 5.183140 CCGTCCCAAAATAACTGTCTCAATT 59.817 40.000 0.00 0.00 0.00 2.32
3782 4795 4.700213 CCGTCCCAAAATAACTGTCTCAAT 59.300 41.667 0.00 0.00 0.00 2.57
3783 4796 4.069304 CCGTCCCAAAATAACTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3784 4797 3.325425 TCCGTCCCAAAATAACTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3785 4798 3.933332 CTCCGTCCCAAAATAACTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3786 4799 3.307480 CCTCCGTCCCAAAATAACTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3787 4800 3.007635 CCTCCGTCCCAAAATAACTGTC 58.992 50.000 0.00 0.00 0.00 3.51
3788 4801 2.290705 CCCTCCGTCCCAAAATAACTGT 60.291 50.000 0.00 0.00 0.00 3.55
3789 4802 2.026636 TCCCTCCGTCCCAAAATAACTG 60.027 50.000 0.00 0.00 0.00 3.16
3790 4803 2.238898 CTCCCTCCGTCCCAAAATAACT 59.761 50.000 0.00 0.00 0.00 2.24
3791 4804 2.026542 ACTCCCTCCGTCCCAAAATAAC 60.027 50.000 0.00 0.00 0.00 1.89
3792 4805 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3793 4806 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3794 4807 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
3795 4808 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
3796 4809 0.616679 CCTACTCCCTCCGTCCCAAA 60.617 60.000 0.00 0.00 0.00 3.28
3797 4810 1.001248 CCTACTCCCTCCGTCCCAA 59.999 63.158 0.00 0.00 0.00 4.12
3798 4811 1.294426 ATCCTACTCCCTCCGTCCCA 61.294 60.000 0.00 0.00 0.00 4.37
3799 4812 0.105607 AATCCTACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
3800 4813 1.790818 AAATCCTACTCCCTCCGTCC 58.209 55.000 0.00 0.00 0.00 4.79
3801 4814 4.409187 AGATAAATCCTACTCCCTCCGTC 58.591 47.826 0.00 0.00 0.00 4.79
3802 4815 4.472690 AGATAAATCCTACTCCCTCCGT 57.527 45.455 0.00 0.00 0.00 4.69
3803 4816 5.304614 TCAAAGATAAATCCTACTCCCTCCG 59.695 44.000 0.00 0.00 0.00 4.63
3804 4817 6.327887 ACTCAAAGATAAATCCTACTCCCTCC 59.672 42.308 0.00 0.00 0.00 4.30
3805 4818 7.368198 ACTCAAAGATAAATCCTACTCCCTC 57.632 40.000 0.00 0.00 0.00 4.30
3806 4819 7.757242 AACTCAAAGATAAATCCTACTCCCT 57.243 36.000 0.00 0.00 0.00 4.20
3807 4820 7.829706 ACAAACTCAAAGATAAATCCTACTCCC 59.170 37.037 0.00 0.00 0.00 4.30
3808 4821 8.794335 ACAAACTCAAAGATAAATCCTACTCC 57.206 34.615 0.00 0.00 0.00 3.85
3812 4825 9.174166 GCCTTACAAACTCAAAGATAAATCCTA 57.826 33.333 0.00 0.00 0.00 2.94
3813 4826 7.890655 AGCCTTACAAACTCAAAGATAAATCCT 59.109 33.333 0.00 0.00 0.00 3.24
3816 4829 8.635765 TCAGCCTTACAAACTCAAAGATAAAT 57.364 30.769 0.00 0.00 0.00 1.40
3890 4903 2.225343 TGCACAAAGGGAAATGGAGGAT 60.225 45.455 0.00 0.00 0.00 3.24
3923 4936 2.043992 AGTGGTATAAGCATACGCCCA 58.956 47.619 0.00 0.00 38.35 5.36
3947 4960 0.547553 TTGGAGCATCAGCAGGCATA 59.452 50.000 0.00 0.00 45.49 3.14
3962 4975 5.791666 TGCTTTGCATTCACATAAATTGGA 58.208 33.333 0.00 0.00 31.71 3.53
3965 4978 9.602568 TCATATTGCTTTGCATTCACATAAATT 57.397 25.926 0.00 0.00 38.76 1.82
4044 5057 0.555769 ACCTTTCTGGCCTTGACCAA 59.444 50.000 3.32 0.00 39.86 3.67
4064 5077 2.262423 ACTTTGAGAAGGTGAGCCAC 57.738 50.000 0.00 0.00 37.19 5.01
4071 5084 5.482878 TCCTCGGTTTATACTTTGAGAAGGT 59.517 40.000 0.00 0.00 37.19 3.50
4079 5092 9.117183 GGAATAAACATCCTCGGTTTATACTTT 57.883 33.333 10.01 0.00 45.69 2.66
4090 5179 3.565482 CCATGGTGGAATAAACATCCTCG 59.435 47.826 2.57 0.00 40.96 4.63
4096 5185 2.168106 GCATGCCATGGTGGAATAAACA 59.832 45.455 14.67 0.00 40.96 2.83
4131 5220 6.515531 GCACTCACATGAATGGAAAGAAAGAA 60.516 38.462 0.00 0.00 0.00 2.52
4144 5234 5.335113 GCATTGTAGAAAGCACTCACATGAA 60.335 40.000 0.00 0.00 0.00 2.57
4381 5471 0.901124 GTCACCTCTGAGCCAGACAT 59.099 55.000 13.76 0.00 35.39 3.06
4413 5503 2.795231 AGTGGTCCACATCTTCATGG 57.205 50.000 24.02 0.00 36.74 3.66
4449 5539 1.340248 GTGAAGAAGTGTGTCCGGAGA 59.660 52.381 3.06 0.00 0.00 3.71
4743 5843 2.991250 TCCTGGAAACTAGCATGAAGC 58.009 47.619 0.00 0.00 46.19 3.86
4810 5913 5.579564 AGCAAGCAGTAGTACTTACCTAC 57.420 43.478 0.00 0.00 32.37 3.18
4907 6010 2.635915 ACTCCAATTCCAGTACCGTTCA 59.364 45.455 0.00 0.00 0.00 3.18
4911 6014 3.408634 ACAAACTCCAATTCCAGTACCG 58.591 45.455 0.00 0.00 0.00 4.02
4941 6044 5.584253 TCTCCAAACGAAAGAGATAGGAG 57.416 43.478 0.00 0.00 42.06 3.69
4943 6046 5.725362 ACTTCTCCAAACGAAAGAGATAGG 58.275 41.667 0.00 0.00 36.57 2.57
4944 6047 8.812329 CAATACTTCTCCAAACGAAAGAGATAG 58.188 37.037 0.00 0.00 36.57 2.08
4949 6052 5.860611 TCCAATACTTCTCCAAACGAAAGA 58.139 37.500 0.00 0.00 0.00 2.52
4954 6057 6.106673 ACATACTCCAATACTTCTCCAAACG 58.893 40.000 0.00 0.00 0.00 3.60
5040 6143 3.936453 GTCAACACCACAGAGTACAAACA 59.064 43.478 0.00 0.00 0.00 2.83
5041 6144 3.936453 TGTCAACACCACAGAGTACAAAC 59.064 43.478 0.00 0.00 0.00 2.93
5042 6145 3.936453 GTGTCAACACCACAGAGTACAAA 59.064 43.478 1.72 0.00 40.85 2.83
5043 6146 3.527533 GTGTCAACACCACAGAGTACAA 58.472 45.455 1.72 0.00 40.85 2.41
5044 6147 3.173668 GTGTCAACACCACAGAGTACA 57.826 47.619 1.72 0.00 40.85 2.90
5070 6186 6.550938 TCCAAGTCTCAATACATCACTGAT 57.449 37.500 0.00 0.00 0.00 2.90
5106 6222 2.744202 CACAGACCACAGCATAAGGAAC 59.256 50.000 0.00 0.00 0.00 3.62
5110 6226 1.089920 GCCACAGACCACAGCATAAG 58.910 55.000 0.00 0.00 0.00 1.73
5127 6243 2.608752 CCAAGTGTGAAGCAAATGAGCC 60.609 50.000 0.00 0.00 34.23 4.70
5128 6244 2.294233 TCCAAGTGTGAAGCAAATGAGC 59.706 45.455 0.00 0.00 0.00 4.26
5129 6245 4.293415 GTTCCAAGTGTGAAGCAAATGAG 58.707 43.478 0.00 0.00 0.00 2.90
5130 6246 3.068024 GGTTCCAAGTGTGAAGCAAATGA 59.932 43.478 0.00 0.00 39.42 2.57
5131 6247 3.068590 AGGTTCCAAGTGTGAAGCAAATG 59.931 43.478 11.60 0.00 41.46 2.32
5132 6248 3.299503 AGGTTCCAAGTGTGAAGCAAAT 58.700 40.909 11.60 0.00 41.46 2.32
5136 6252 1.876156 CTGAGGTTCCAAGTGTGAAGC 59.124 52.381 0.00 0.00 39.80 3.86
5137 6253 3.134458 GTCTGAGGTTCCAAGTGTGAAG 58.866 50.000 0.00 0.00 0.00 3.02
5138 6254 2.771943 AGTCTGAGGTTCCAAGTGTGAA 59.228 45.455 0.00 0.00 0.00 3.18
5140 6256 2.103094 TCAGTCTGAGGTTCCAAGTGTG 59.897 50.000 0.00 0.00 0.00 3.82
5141 6257 2.366916 CTCAGTCTGAGGTTCCAAGTGT 59.633 50.000 20.50 0.00 40.71 3.55
5142 6258 3.037431 CTCAGTCTGAGGTTCCAAGTG 57.963 52.381 20.50 0.00 40.71 3.16
5152 6268 4.620589 ATGGAATATGCCTCAGTCTGAG 57.379 45.455 21.18 21.18 43.91 3.35
5153 6269 5.128205 CAAATGGAATATGCCTCAGTCTGA 58.872 41.667 0.11 1.78 0.00 3.27
5154 6270 4.261489 GCAAATGGAATATGCCTCAGTCTG 60.261 45.833 0.11 0.00 34.03 3.51
5155 6271 3.887716 GCAAATGGAATATGCCTCAGTCT 59.112 43.478 0.11 0.00 34.03 3.24
5156 6272 3.887716 AGCAAATGGAATATGCCTCAGTC 59.112 43.478 0.11 0.00 40.93 3.51
5157 6273 3.907221 AGCAAATGGAATATGCCTCAGT 58.093 40.909 0.11 0.00 40.93 3.41
5158 6274 4.340097 TGAAGCAAATGGAATATGCCTCAG 59.660 41.667 0.11 0.00 40.93 3.35
5159 6275 4.098349 GTGAAGCAAATGGAATATGCCTCA 59.902 41.667 0.11 0.00 40.93 3.86
5160 6276 4.098349 TGTGAAGCAAATGGAATATGCCTC 59.902 41.667 0.11 0.00 40.93 4.70
5164 6280 5.290158 GCAAGTGTGAAGCAAATGGAATATG 59.710 40.000 0.00 0.00 0.00 1.78
5166 6282 4.280425 TGCAAGTGTGAAGCAAATGGAATA 59.720 37.500 0.00 0.00 34.97 1.75
5185 6301 1.446366 TGCAAATTGGCAGCTGCAA 59.554 47.368 37.63 27.49 41.61 4.08
5188 6304 2.066262 CTTCTTGCAAATTGGCAGCTG 58.934 47.619 10.11 10.11 45.88 4.24
5190 6306 1.435577 CCTTCTTGCAAATTGGCAGC 58.564 50.000 7.73 0.00 45.88 5.25
5213 6329 5.276868 CGAGTATCCAATCAAGTAAAAGGCG 60.277 44.000 0.00 0.00 0.00 5.52
5215 6331 6.480320 CCTCGAGTATCCAATCAAGTAAAAGG 59.520 42.308 12.31 0.00 0.00 3.11
5216 6332 7.265673 TCCTCGAGTATCCAATCAAGTAAAAG 58.734 38.462 12.31 0.00 0.00 2.27
5217 6333 7.177832 TCCTCGAGTATCCAATCAAGTAAAA 57.822 36.000 12.31 0.00 0.00 1.52
5228 6344 6.341316 CAAATTCTCTTTCCTCGAGTATCCA 58.659 40.000 12.31 0.00 0.00 3.41
5232 6348 5.407407 AGCAAATTCTCTTTCCTCGAGTA 57.593 39.130 12.31 0.00 0.00 2.59
5245 6361 3.694926 AGAGCTAGCCAAAGCAAATTCT 58.305 40.909 12.13 0.10 45.30 2.40
5253 6369 5.877012 TCTCATTACAAAGAGCTAGCCAAAG 59.123 40.000 12.13 0.41 0.00 2.77
5257 6373 5.017294 ACTCTCATTACAAAGAGCTAGCC 57.983 43.478 12.13 2.81 42.28 3.93
5263 6379 7.224362 CAGGATTGCTACTCTCATTACAAAGAG 59.776 40.741 0.00 0.00 43.78 2.85
5271 6387 4.293494 TCTCCAGGATTGCTACTCTCATT 58.707 43.478 0.00 0.00 0.00 2.57
5274 6390 4.744795 TTTCTCCAGGATTGCTACTCTC 57.255 45.455 0.00 0.00 0.00 3.20
5275 6391 5.505181 TTTTTCTCCAGGATTGCTACTCT 57.495 39.130 0.00 0.00 0.00 3.24
5324 6449 5.866633 TCGATTTTTGTTTGAAGTGCTTTGT 59.133 32.000 0.00 0.00 0.00 2.83
5329 6454 4.267452 TGCTTCGATTTTTGTTTGAAGTGC 59.733 37.500 0.00 0.00 37.07 4.40
5330 6455 5.947503 TGCTTCGATTTTTGTTTGAAGTG 57.052 34.783 0.00 0.00 37.07 3.16
5332 6457 6.863126 ACCTATGCTTCGATTTTTGTTTGAAG 59.137 34.615 0.00 0.00 37.56 3.02
5333 6458 6.744112 ACCTATGCTTCGATTTTTGTTTGAA 58.256 32.000 0.00 0.00 0.00 2.69
5334 6459 6.325919 ACCTATGCTTCGATTTTTGTTTGA 57.674 33.333 0.00 0.00 0.00 2.69
5336 6461 9.174166 ACTATACCTATGCTTCGATTTTTGTTT 57.826 29.630 0.00 0.00 0.00 2.83
5337 6462 8.732746 ACTATACCTATGCTTCGATTTTTGTT 57.267 30.769 0.00 0.00 0.00 2.83
5338 6463 9.826574 TTACTATACCTATGCTTCGATTTTTGT 57.173 29.630 0.00 0.00 0.00 2.83
5344 6469 8.460428 GCTAACTTACTATACCTATGCTTCGAT 58.540 37.037 0.00 0.00 0.00 3.59
5345 6470 7.446319 TGCTAACTTACTATACCTATGCTTCGA 59.554 37.037 0.00 0.00 0.00 3.71
5346 6471 7.537991 GTGCTAACTTACTATACCTATGCTTCG 59.462 40.741 0.00 0.00 0.00 3.79
5347 6472 8.358148 TGTGCTAACTTACTATACCTATGCTTC 58.642 37.037 0.00 0.00 0.00 3.86
5360 6485 9.116067 TGTCAAATACTTTTGTGCTAACTTACT 57.884 29.630 0.00 0.00 42.37 2.24
5361 6486 9.724839 TTGTCAAATACTTTTGTGCTAACTTAC 57.275 29.630 0.00 0.00 42.37 2.34
5365 6490 9.848172 CAATTTGTCAAATACTTTTGTGCTAAC 57.152 29.630 11.18 0.00 42.37 2.34
5398 6523 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
5399 6524 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
5400 6525 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
5401 6526 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
5402 6527 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
5447 6572 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
5448 6573 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
5449 6574 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
5450 6575 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
5451 6576 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
5452 6577 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
5453 6578 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
5454 6579 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
5455 6580 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
5458 6583 9.812347 TGATACTCCCTCCGTAAACTAATATAA 57.188 33.333 0.00 0.00 0.00 0.98
5459 6584 9.812347 TTGATACTCCCTCCGTAAACTAATATA 57.188 33.333 0.00 0.00 0.00 0.86
5460 6585 8.716674 TTGATACTCCCTCCGTAAACTAATAT 57.283 34.615 0.00 0.00 0.00 1.28
5461 6586 8.537728 TTTGATACTCCCTCCGTAAACTAATA 57.462 34.615 0.00 0.00 0.00 0.98
5462 6587 7.343833 TCTTTGATACTCCCTCCGTAAACTAAT 59.656 37.037 0.00 0.00 0.00 1.73
5463 6588 6.664816 TCTTTGATACTCCCTCCGTAAACTAA 59.335 38.462 0.00 0.00 0.00 2.24
5464 6589 6.189859 TCTTTGATACTCCCTCCGTAAACTA 58.810 40.000 0.00 0.00 0.00 2.24
5465 6590 5.021458 TCTTTGATACTCCCTCCGTAAACT 58.979 41.667 0.00 0.00 0.00 2.66
5466 6591 5.334724 TCTTTGATACTCCCTCCGTAAAC 57.665 43.478 0.00 0.00 0.00 2.01
5467 6592 5.626116 GCTTCTTTGATACTCCCTCCGTAAA 60.626 44.000 0.00 0.00 0.00 2.01
5468 6593 4.142004 GCTTCTTTGATACTCCCTCCGTAA 60.142 45.833 0.00 0.00 0.00 3.18
5469 6594 3.383825 GCTTCTTTGATACTCCCTCCGTA 59.616 47.826 0.00 0.00 0.00 4.02
5470 6595 2.168728 GCTTCTTTGATACTCCCTCCGT 59.831 50.000 0.00 0.00 0.00 4.69
5471 6596 2.168521 TGCTTCTTTGATACTCCCTCCG 59.831 50.000 0.00 0.00 0.00 4.63
5472 6597 3.914426 TGCTTCTTTGATACTCCCTCC 57.086 47.619 0.00 0.00 0.00 4.30
5473 6598 7.604545 GGTATAATGCTTCTTTGATACTCCCTC 59.395 40.741 0.00 0.00 0.00 4.30
5474 6599 7.293535 AGGTATAATGCTTCTTTGATACTCCCT 59.706 37.037 0.00 0.00 0.00 4.20
5475 6600 7.454225 AGGTATAATGCTTCTTTGATACTCCC 58.546 38.462 0.00 0.00 0.00 4.30
5476 6601 7.604545 GGAGGTATAATGCTTCTTTGATACTCC 59.395 40.741 0.00 0.00 0.00 3.85
5477 6602 8.150945 TGGAGGTATAATGCTTCTTTGATACTC 58.849 37.037 0.00 0.00 0.00 2.59
5478 6603 8.034313 TGGAGGTATAATGCTTCTTTGATACT 57.966 34.615 0.00 0.00 0.00 2.12
5479 6604 8.677148 TTGGAGGTATAATGCTTCTTTGATAC 57.323 34.615 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.