Multiple sequence alignment - TraesCS5A01G029800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G029800 chr5A 100.000 3080 0 0 1 3080 25862949 25866028 0.000000e+00 5688.0
1 TraesCS5A01G029800 chr5A 100.000 28 0 0 2248 2275 25865160 25865187 6.000000e-03 52.8
2 TraesCS5A01G029800 chr5A 100.000 28 0 0 2212 2239 25865196 25865223 6.000000e-03 52.8
3 TraesCS5A01G029800 chr5D 92.222 2700 87 55 432 3076 36742560 36745191 0.000000e+00 3709.0
4 TraesCS5A01G029800 chr5D 88.050 159 17 2 270 428 342701581 342701737 1.460000e-43 187.0
5 TraesCS5A01G029800 chr5B 91.718 2258 92 35 788 3009 27486172 27488370 0.000000e+00 3046.0
6 TraesCS5A01G029800 chr5B 80.921 152 15 10 631 781 27485990 27486128 1.170000e-19 108.0
7 TraesCS5A01G029800 chr5B 95.833 48 2 0 3033 3080 27488369 27488416 9.160000e-11 78.7
8 TraesCS5A01G029800 chr2D 76.923 845 171 19 1239 2071 299552071 299551239 2.800000e-125 459.0
9 TraesCS5A01G029800 chr7B 88.679 159 17 1 270 428 743278376 743278533 3.130000e-45 193.0
10 TraesCS5A01G029800 chr7D 88.608 158 17 1 271 428 326052763 326052607 1.130000e-44 191.0
11 TraesCS5A01G029800 chr1D 88.750 160 13 4 271 428 486707061 486707217 1.130000e-44 191.0
12 TraesCS5A01G029800 chr1D 89.404 151 15 1 278 428 7431243 7431094 4.050000e-44 189.0
13 TraesCS5A01G029800 chr1B 85.714 189 17 7 4 185 560784730 560784545 1.130000e-44 191.0
14 TraesCS5A01G029800 chr2A 88.462 156 16 2 273 428 685385893 685385740 1.460000e-43 187.0
15 TraesCS5A01G029800 chr2A 87.975 158 18 1 271 428 479823368 479823212 5.240000e-43 185.0
16 TraesCS5A01G029800 chr2A 87.975 158 17 2 271 428 508121601 508121756 5.240000e-43 185.0
17 TraesCS5A01G029800 chr3D 87.975 158 18 1 271 428 14045464 14045620 5.240000e-43 185.0
18 TraesCS5A01G029800 chr4D 83.688 141 18 4 2 138 100338297 100338436 8.960000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G029800 chr5A 25862949 25866028 3079 False 1931.200000 5688 100.000000 1 3080 3 chr5A.!!$F1 3079
1 TraesCS5A01G029800 chr5D 36742560 36745191 2631 False 3709.000000 3709 92.222000 432 3076 1 chr5D.!!$F1 2644
2 TraesCS5A01G029800 chr5B 27485990 27488416 2426 False 1077.566667 3046 89.490667 631 3080 3 chr5B.!!$F1 2449
3 TraesCS5A01G029800 chr2D 299551239 299552071 832 True 459.000000 459 76.923000 1239 2071 1 chr2D.!!$R1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
803 849 0.036671 ATCCTCCCGGTTCGTGAAAC 60.037 55.0 0.0 0.0 37.12 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2484 2579 0.179067 TTCACCAACTGACACCCGAC 60.179 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.767255 CGGAGGTGGCTGTCCTGC 62.767 72.222 1.69 3.87 39.50 4.85
23 24 4.767255 GGAGGTGGCTGTCCTGCG 62.767 72.222 1.69 0.00 34.07 5.18
24 25 4.767255 GAGGTGGCTGTCCTGCGG 62.767 72.222 1.69 0.00 35.20 5.69
30 31 2.280457 GCTGTCCTGCGGCCTATC 60.280 66.667 0.00 0.00 43.55 2.08
31 32 3.094062 GCTGTCCTGCGGCCTATCA 62.094 63.158 0.00 0.00 43.55 2.15
32 33 1.522092 CTGTCCTGCGGCCTATCAA 59.478 57.895 0.00 0.00 0.00 2.57
33 34 0.531532 CTGTCCTGCGGCCTATCAAG 60.532 60.000 0.00 0.00 0.00 3.02
34 35 1.889573 GTCCTGCGGCCTATCAAGC 60.890 63.158 0.00 0.00 0.00 4.01
40 41 4.164258 GGCCTATCAAGCCGCATT 57.836 55.556 0.00 0.00 41.41 3.56
41 42 1.952263 GGCCTATCAAGCCGCATTC 59.048 57.895 0.00 0.00 41.41 2.67
42 43 1.571460 GCCTATCAAGCCGCATTCG 59.429 57.895 0.00 0.00 0.00 3.34
52 53 3.409856 CGCATTCGGTTGGGCTAG 58.590 61.111 0.00 0.00 0.00 3.42
53 54 2.180204 CGCATTCGGTTGGGCTAGG 61.180 63.158 0.00 0.00 0.00 3.02
54 55 2.481471 GCATTCGGTTGGGCTAGGC 61.481 63.158 8.00 8.00 0.00 3.93
64 65 4.874533 GGCTAGGCCTACCCCCGT 62.875 72.222 8.91 0.00 46.69 5.28
65 66 3.232483 GCTAGGCCTACCCCCGTC 61.232 72.222 8.91 0.00 36.11 4.79
66 67 2.607602 CTAGGCCTACCCCCGTCT 59.392 66.667 8.91 0.00 36.11 4.18
67 68 1.075450 CTAGGCCTACCCCCGTCTT 60.075 63.158 8.91 0.00 36.11 3.01
68 69 1.075748 TAGGCCTACCCCCGTCTTC 60.076 63.158 8.91 0.00 36.11 2.87
69 70 1.877672 TAGGCCTACCCCCGTCTTCA 61.878 60.000 8.91 0.00 36.11 3.02
70 71 2.070650 GGCCTACCCCCGTCTTCAT 61.071 63.158 0.00 0.00 0.00 2.57
71 72 1.632965 GGCCTACCCCCGTCTTCATT 61.633 60.000 0.00 0.00 0.00 2.57
72 73 1.125633 GCCTACCCCCGTCTTCATTA 58.874 55.000 0.00 0.00 0.00 1.90
73 74 1.487558 GCCTACCCCCGTCTTCATTAA 59.512 52.381 0.00 0.00 0.00 1.40
74 75 2.744166 GCCTACCCCCGTCTTCATTAAC 60.744 54.545 0.00 0.00 0.00 2.01
75 76 2.158856 CCTACCCCCGTCTTCATTAACC 60.159 54.545 0.00 0.00 0.00 2.85
76 77 1.665137 ACCCCCGTCTTCATTAACCT 58.335 50.000 0.00 0.00 0.00 3.50
77 78 1.558294 ACCCCCGTCTTCATTAACCTC 59.442 52.381 0.00 0.00 0.00 3.85
78 79 1.557832 CCCCCGTCTTCATTAACCTCA 59.442 52.381 0.00 0.00 0.00 3.86
79 80 2.629051 CCCCGTCTTCATTAACCTCAC 58.371 52.381 0.00 0.00 0.00 3.51
80 81 2.629051 CCCGTCTTCATTAACCTCACC 58.371 52.381 0.00 0.00 0.00 4.02
81 82 2.268298 CCGTCTTCATTAACCTCACCG 58.732 52.381 0.00 0.00 0.00 4.94
82 83 2.268298 CGTCTTCATTAACCTCACCGG 58.732 52.381 0.00 0.00 39.35 5.28
83 84 2.007608 GTCTTCATTAACCTCACCGGC 58.992 52.381 0.00 0.00 35.61 6.13
84 85 1.006832 CTTCATTAACCTCACCGGCG 58.993 55.000 0.00 0.00 35.61 6.46
85 86 0.391927 TTCATTAACCTCACCGGCGG 60.392 55.000 27.06 27.06 35.61 6.13
86 87 1.219664 CATTAACCTCACCGGCGGA 59.780 57.895 35.78 10.64 35.61 5.54
87 88 1.087771 CATTAACCTCACCGGCGGAC 61.088 60.000 35.78 0.00 35.61 4.79
88 89 2.567564 ATTAACCTCACCGGCGGACG 62.568 60.000 35.78 22.86 43.80 4.79
98 99 4.047059 GGCGGACGAGGACGACAA 62.047 66.667 0.00 0.00 42.66 3.18
99 100 2.181021 GCGGACGAGGACGACAAT 59.819 61.111 0.00 0.00 42.66 2.71
100 101 1.430632 GCGGACGAGGACGACAATA 59.569 57.895 0.00 0.00 42.66 1.90
101 102 0.591741 GCGGACGAGGACGACAATAG 60.592 60.000 0.00 0.00 42.66 1.73
102 103 0.591741 CGGACGAGGACGACAATAGC 60.592 60.000 0.00 0.00 42.66 2.97
103 104 0.454600 GGACGAGGACGACAATAGCA 59.545 55.000 0.00 0.00 42.66 3.49
104 105 1.135199 GGACGAGGACGACAATAGCAA 60.135 52.381 0.00 0.00 42.66 3.91
105 106 2.186076 GACGAGGACGACAATAGCAAG 58.814 52.381 0.00 0.00 42.66 4.01
106 107 1.135083 ACGAGGACGACAATAGCAAGG 60.135 52.381 0.00 0.00 42.66 3.61
107 108 1.291132 GAGGACGACAATAGCAAGGC 58.709 55.000 0.00 0.00 0.00 4.35
108 109 0.107654 AGGACGACAATAGCAAGGCC 60.108 55.000 0.00 0.00 0.00 5.19
109 110 0.392461 GGACGACAATAGCAAGGCCA 60.392 55.000 5.01 0.00 0.00 5.36
110 111 1.448985 GACGACAATAGCAAGGCCAA 58.551 50.000 5.01 0.00 0.00 4.52
111 112 1.398390 GACGACAATAGCAAGGCCAAG 59.602 52.381 5.01 0.00 0.00 3.61
112 113 0.734889 CGACAATAGCAAGGCCAAGG 59.265 55.000 5.01 0.00 0.00 3.61
113 114 0.457443 GACAATAGCAAGGCCAAGGC 59.543 55.000 5.01 5.16 41.06 4.35
114 115 0.251742 ACAATAGCAAGGCCAAGGCA 60.252 50.000 13.87 0.00 44.11 4.75
115 116 0.896923 CAATAGCAAGGCCAAGGCAA 59.103 50.000 13.87 0.00 44.11 4.52
116 117 1.483415 CAATAGCAAGGCCAAGGCAAT 59.517 47.619 13.87 0.00 44.11 3.56
117 118 1.870064 ATAGCAAGGCCAAGGCAATT 58.130 45.000 13.87 4.21 44.11 2.32
118 119 1.643310 TAGCAAGGCCAAGGCAATTT 58.357 45.000 13.87 1.31 44.11 1.82
119 120 1.643310 AGCAAGGCCAAGGCAATTTA 58.357 45.000 13.87 0.00 44.11 1.40
120 121 1.276138 AGCAAGGCCAAGGCAATTTAC 59.724 47.619 13.87 2.38 44.11 2.01
121 122 1.276138 GCAAGGCCAAGGCAATTTACT 59.724 47.619 13.87 0.00 44.11 2.24
122 123 2.495669 GCAAGGCCAAGGCAATTTACTA 59.504 45.455 13.87 0.00 44.11 1.82
123 124 3.429410 GCAAGGCCAAGGCAATTTACTAG 60.429 47.826 13.87 0.00 44.11 2.57
124 125 3.018423 AGGCCAAGGCAATTTACTAGG 57.982 47.619 13.87 0.00 44.11 3.02
125 126 2.031870 GGCCAAGGCAATTTACTAGGG 58.968 52.381 13.87 0.00 44.11 3.53
126 127 1.409064 GCCAAGGCAATTTACTAGGGC 59.591 52.381 6.14 0.00 41.49 5.19
127 128 2.733956 CCAAGGCAATTTACTAGGGCA 58.266 47.619 0.00 0.00 0.00 5.36
128 129 2.689983 CCAAGGCAATTTACTAGGGCAG 59.310 50.000 0.00 0.00 0.00 4.85
129 130 3.356290 CAAGGCAATTTACTAGGGCAGT 58.644 45.455 0.00 0.00 41.62 4.40
130 131 3.004752 AGGCAATTTACTAGGGCAGTG 57.995 47.619 0.00 0.00 38.24 3.66
131 132 2.308866 AGGCAATTTACTAGGGCAGTGT 59.691 45.455 0.00 0.00 38.24 3.55
132 133 2.423538 GGCAATTTACTAGGGCAGTGTG 59.576 50.000 0.00 0.00 38.24 3.82
133 134 2.159379 GCAATTTACTAGGGCAGTGTGC 60.159 50.000 0.00 0.00 44.08 4.57
134 135 2.024176 ATTTACTAGGGCAGTGTGCG 57.976 50.000 0.00 0.00 46.21 5.34
135 136 0.036765 TTTACTAGGGCAGTGTGCGG 60.037 55.000 0.00 0.00 46.21 5.69
136 137 1.895020 TTACTAGGGCAGTGTGCGGG 61.895 60.000 0.00 0.00 46.21 6.13
142 143 3.595758 GCAGTGTGCGGGCAGTTT 61.596 61.111 0.00 0.00 31.71 2.66
143 144 2.258013 GCAGTGTGCGGGCAGTTTA 61.258 57.895 0.00 0.00 31.71 2.01
144 145 1.586154 GCAGTGTGCGGGCAGTTTAT 61.586 55.000 0.00 0.00 31.71 1.40
145 146 0.881118 CAGTGTGCGGGCAGTTTATT 59.119 50.000 0.00 0.00 0.00 1.40
146 147 1.269448 CAGTGTGCGGGCAGTTTATTT 59.731 47.619 0.00 0.00 0.00 1.40
147 148 1.539827 AGTGTGCGGGCAGTTTATTTC 59.460 47.619 0.00 0.00 0.00 2.17
148 149 1.539827 GTGTGCGGGCAGTTTATTTCT 59.460 47.619 0.00 0.00 0.00 2.52
149 150 2.030274 GTGTGCGGGCAGTTTATTTCTT 60.030 45.455 0.00 0.00 0.00 2.52
150 151 2.625790 TGTGCGGGCAGTTTATTTCTTT 59.374 40.909 0.00 0.00 0.00 2.52
151 152 3.068873 TGTGCGGGCAGTTTATTTCTTTT 59.931 39.130 0.00 0.00 0.00 2.27
152 153 4.055360 GTGCGGGCAGTTTATTTCTTTTT 58.945 39.130 0.00 0.00 0.00 1.94
192 193 8.562052 AGTTATTTAAGTGGACTTTTACGTTGG 58.438 33.333 0.00 0.00 37.40 3.77
193 194 8.558700 GTTATTTAAGTGGACTTTTACGTTGGA 58.441 33.333 0.00 0.00 37.40 3.53
194 195 6.607735 TTTAAGTGGACTTTTACGTTGGAG 57.392 37.500 0.00 0.00 37.40 3.86
195 196 3.832615 AGTGGACTTTTACGTTGGAGT 57.167 42.857 0.00 0.00 0.00 3.85
196 197 4.146745 AGTGGACTTTTACGTTGGAGTT 57.853 40.909 0.00 0.00 0.00 3.01
197 198 3.875134 AGTGGACTTTTACGTTGGAGTTG 59.125 43.478 0.00 0.00 0.00 3.16
198 199 3.002965 GTGGACTTTTACGTTGGAGTTGG 59.997 47.826 0.00 0.00 0.00 3.77
199 200 3.118334 TGGACTTTTACGTTGGAGTTGGA 60.118 43.478 0.00 0.00 0.00 3.53
200 201 3.497262 GGACTTTTACGTTGGAGTTGGAG 59.503 47.826 0.00 0.00 0.00 3.86
201 202 4.124970 GACTTTTACGTTGGAGTTGGAGT 58.875 43.478 0.00 0.00 0.00 3.85
202 203 4.520179 ACTTTTACGTTGGAGTTGGAGTT 58.480 39.130 0.00 0.00 0.00 3.01
203 204 4.334481 ACTTTTACGTTGGAGTTGGAGTTG 59.666 41.667 0.00 0.00 0.00 3.16
204 205 1.873698 TACGTTGGAGTTGGAGTTGC 58.126 50.000 0.00 0.00 0.00 4.17
205 206 0.180406 ACGTTGGAGTTGGAGTTGCT 59.820 50.000 0.00 0.00 0.00 3.91
206 207 0.868406 CGTTGGAGTTGGAGTTGCTC 59.132 55.000 0.00 0.00 0.00 4.26
207 208 1.541233 CGTTGGAGTTGGAGTTGCTCT 60.541 52.381 0.00 0.00 0.00 4.09
208 209 2.576615 GTTGGAGTTGGAGTTGCTCTT 58.423 47.619 0.00 0.00 0.00 2.85
209 210 3.740115 GTTGGAGTTGGAGTTGCTCTTA 58.260 45.455 0.00 0.00 0.00 2.10
210 211 3.402628 TGGAGTTGGAGTTGCTCTTAC 57.597 47.619 0.00 0.00 0.00 2.34
211 212 2.288825 TGGAGTTGGAGTTGCTCTTACG 60.289 50.000 0.00 0.00 0.00 3.18
212 213 2.288886 GGAGTTGGAGTTGCTCTTACGT 60.289 50.000 0.00 0.00 0.00 3.57
213 214 2.987821 GAGTTGGAGTTGCTCTTACGTC 59.012 50.000 0.00 0.00 0.00 4.34
214 215 2.628657 AGTTGGAGTTGCTCTTACGTCT 59.371 45.455 0.00 0.00 0.00 4.18
215 216 2.987821 GTTGGAGTTGCTCTTACGTCTC 59.012 50.000 0.00 0.00 0.00 3.36
216 217 1.544691 TGGAGTTGCTCTTACGTCTCC 59.455 52.381 8.35 8.35 41.00 3.71
217 218 1.544691 GGAGTTGCTCTTACGTCTCCA 59.455 52.381 9.99 0.00 40.51 3.86
218 219 2.029290 GGAGTTGCTCTTACGTCTCCAA 60.029 50.000 9.99 0.00 40.51 3.53
219 220 3.554337 GGAGTTGCTCTTACGTCTCCAAA 60.554 47.826 9.99 0.00 40.51 3.28
220 221 4.246458 GAGTTGCTCTTACGTCTCCAAAT 58.754 43.478 0.00 0.00 0.00 2.32
221 222 4.642429 AGTTGCTCTTACGTCTCCAAATT 58.358 39.130 0.00 0.00 0.00 1.82
222 223 5.063880 AGTTGCTCTTACGTCTCCAAATTT 58.936 37.500 0.00 0.00 0.00 1.82
223 224 5.049405 AGTTGCTCTTACGTCTCCAAATTTG 60.049 40.000 11.40 11.40 0.00 2.32
224 225 3.188460 TGCTCTTACGTCTCCAAATTTGC 59.812 43.478 12.92 0.00 0.00 3.68
225 226 3.188460 GCTCTTACGTCTCCAAATTTGCA 59.812 43.478 12.92 0.00 0.00 4.08
226 227 4.142600 GCTCTTACGTCTCCAAATTTGCAT 60.143 41.667 12.92 0.00 0.00 3.96
227 228 5.545658 TCTTACGTCTCCAAATTTGCATC 57.454 39.130 12.92 2.41 0.00 3.91
228 229 5.000591 TCTTACGTCTCCAAATTTGCATCA 58.999 37.500 12.92 0.00 0.00 3.07
229 230 5.647658 TCTTACGTCTCCAAATTTGCATCAT 59.352 36.000 12.92 0.00 0.00 2.45
230 231 4.361451 ACGTCTCCAAATTTGCATCATC 57.639 40.909 12.92 0.49 0.00 2.92
231 232 4.012374 ACGTCTCCAAATTTGCATCATCT 58.988 39.130 12.92 0.00 0.00 2.90
232 233 5.185454 ACGTCTCCAAATTTGCATCATCTA 58.815 37.500 12.92 0.00 0.00 1.98
233 234 5.824624 ACGTCTCCAAATTTGCATCATCTAT 59.175 36.000 12.92 0.00 0.00 1.98
234 235 6.319658 ACGTCTCCAAATTTGCATCATCTATT 59.680 34.615 12.92 0.00 0.00 1.73
235 236 6.635641 CGTCTCCAAATTTGCATCATCTATTG 59.364 38.462 12.92 0.00 0.00 1.90
236 237 6.921857 GTCTCCAAATTTGCATCATCTATTGG 59.078 38.462 12.92 0.00 37.90 3.16
237 238 6.834969 TCTCCAAATTTGCATCATCTATTGGA 59.165 34.615 12.92 11.55 41.89 3.53
238 239 7.046292 TCCAAATTTGCATCATCTATTGGAG 57.954 36.000 12.92 0.00 39.93 3.86
239 240 5.694910 CCAAATTTGCATCATCTATTGGAGC 59.305 40.000 12.92 0.00 38.64 4.70
240 241 6.462487 CCAAATTTGCATCATCTATTGGAGCT 60.462 38.462 12.92 0.00 38.64 4.09
241 242 5.961396 ATTTGCATCATCTATTGGAGCTC 57.039 39.130 4.71 4.71 0.00 4.09
242 243 3.413846 TGCATCATCTATTGGAGCTCC 57.586 47.619 26.78 26.78 0.00 4.70
243 244 2.707257 TGCATCATCTATTGGAGCTCCA 59.293 45.455 32.00 32.00 45.94 3.86
251 252 4.301505 TGGAGCTCCACGCATTTC 57.698 55.556 32.00 2.34 42.01 2.17
252 253 1.377202 TGGAGCTCCACGCATTTCC 60.377 57.895 32.00 2.46 42.01 3.13
253 254 2.115291 GGAGCTCCACGCATTTCCC 61.115 63.158 28.43 0.00 42.61 3.97
254 255 2.044946 AGCTCCACGCATTTCCCC 60.045 61.111 0.00 0.00 42.61 4.81
255 256 2.361104 GCTCCACGCATTTCCCCA 60.361 61.111 0.00 0.00 38.92 4.96
256 257 2.409870 GCTCCACGCATTTCCCCAG 61.410 63.158 0.00 0.00 38.92 4.45
257 258 1.750399 CTCCACGCATTTCCCCAGG 60.750 63.158 0.00 0.00 0.00 4.45
258 259 2.196997 CTCCACGCATTTCCCCAGGA 62.197 60.000 0.00 0.00 0.00 3.86
259 260 1.076777 CCACGCATTTCCCCAGGAT 60.077 57.895 0.00 0.00 0.00 3.24
260 261 0.684153 CCACGCATTTCCCCAGGATT 60.684 55.000 0.00 0.00 0.00 3.01
261 262 1.409521 CCACGCATTTCCCCAGGATTA 60.410 52.381 0.00 0.00 0.00 1.75
262 263 2.586425 CACGCATTTCCCCAGGATTAT 58.414 47.619 0.00 0.00 0.00 1.28
263 264 3.497763 CCACGCATTTCCCCAGGATTATA 60.498 47.826 0.00 0.00 0.00 0.98
264 265 3.753272 CACGCATTTCCCCAGGATTATAG 59.247 47.826 0.00 0.00 0.00 1.31
265 266 3.394606 ACGCATTTCCCCAGGATTATAGT 59.605 43.478 0.00 0.00 0.00 2.12
266 267 4.595781 ACGCATTTCCCCAGGATTATAGTA 59.404 41.667 0.00 0.00 0.00 1.82
267 268 4.935808 CGCATTTCCCCAGGATTATAGTAC 59.064 45.833 0.00 0.00 0.00 2.73
268 269 5.280011 CGCATTTCCCCAGGATTATAGTACT 60.280 44.000 0.00 0.00 0.00 2.73
269 270 5.940470 GCATTTCCCCAGGATTATAGTACTG 59.060 44.000 5.39 0.38 0.00 2.74
270 271 6.465894 GCATTTCCCCAGGATTATAGTACTGT 60.466 42.308 5.39 0.39 0.00 3.55
271 272 7.256547 GCATTTCCCCAGGATTATAGTACTGTA 60.257 40.741 5.39 0.00 0.00 2.74
272 273 7.607615 TTTCCCCAGGATTATAGTACTGTAC 57.392 40.000 9.93 9.93 0.00 2.90
273 274 6.541264 TCCCCAGGATTATAGTACTGTACT 57.459 41.667 22.72 22.72 42.68 2.73
274 275 6.550163 TCCCCAGGATTATAGTACTGTACTC 58.450 44.000 22.79 9.31 40.14 2.59
275 276 5.715753 CCCCAGGATTATAGTACTGTACTCC 59.284 48.000 22.79 21.47 40.14 3.85
276 277 6.468945 CCCCAGGATTATAGTACTGTACTCCT 60.469 46.154 24.31 24.31 37.00 3.69
277 278 7.011382 CCCAGGATTATAGTACTGTACTCCTT 58.989 42.308 26.27 14.68 35.30 3.36
278 279 7.177041 CCCAGGATTATAGTACTGTACTCCTTC 59.823 44.444 26.27 14.89 35.30 3.46
279 280 7.945664 CCAGGATTATAGTACTGTACTCCTTCT 59.054 40.741 26.27 11.26 35.30 2.85
280 281 9.005777 CAGGATTATAGTACTGTACTCCTTCTC 57.994 40.741 26.27 13.88 35.30 2.87
281 282 8.951541 AGGATTATAGTACTGTACTCCTTCTCT 58.048 37.037 24.31 12.57 34.34 3.10
282 283 9.223099 GGATTATAGTACTGTACTCCTTCTCTC 57.777 40.741 22.79 11.71 40.14 3.20
285 286 5.765576 AGTACTGTACTCCTTCTCTCTCA 57.234 43.478 14.53 0.00 32.47 3.27
286 287 5.741011 AGTACTGTACTCCTTCTCTCTCAG 58.259 45.833 14.53 0.00 32.47 3.35
287 288 4.650972 ACTGTACTCCTTCTCTCTCAGT 57.349 45.455 0.00 0.00 0.00 3.41
288 289 4.993028 ACTGTACTCCTTCTCTCTCAGTT 58.007 43.478 0.00 0.00 32.15 3.16
289 290 5.390387 ACTGTACTCCTTCTCTCTCAGTTT 58.610 41.667 0.00 0.00 32.15 2.66
290 291 6.544650 ACTGTACTCCTTCTCTCTCAGTTTA 58.455 40.000 0.00 0.00 32.15 2.01
291 292 7.179269 ACTGTACTCCTTCTCTCTCAGTTTAT 58.821 38.462 0.00 0.00 32.15 1.40
292 293 8.330247 ACTGTACTCCTTCTCTCTCAGTTTATA 58.670 37.037 0.00 0.00 32.15 0.98
293 294 9.179909 CTGTACTCCTTCTCTCTCAGTTTATAA 57.820 37.037 0.00 0.00 0.00 0.98
294 295 9.179909 TGTACTCCTTCTCTCTCAGTTTATAAG 57.820 37.037 0.00 0.00 0.00 1.73
295 296 7.654022 ACTCCTTCTCTCTCAGTTTATAAGG 57.346 40.000 0.00 0.00 34.79 2.69
296 297 7.186268 ACTCCTTCTCTCTCAGTTTATAAGGT 58.814 38.462 0.00 0.00 35.00 3.50
297 298 7.123547 ACTCCTTCTCTCTCAGTTTATAAGGTG 59.876 40.741 0.00 0.00 35.00 4.00
298 299 6.954684 TCCTTCTCTCTCAGTTTATAAGGTGT 59.045 38.462 0.00 0.00 35.00 4.16
299 300 7.038659 CCTTCTCTCTCAGTTTATAAGGTGTG 58.961 42.308 0.00 0.00 0.00 3.82
300 301 7.310113 CCTTCTCTCTCAGTTTATAAGGTGTGT 60.310 40.741 0.00 0.00 0.00 3.72
301 302 6.925211 TCTCTCTCAGTTTATAAGGTGTGTG 58.075 40.000 0.00 0.00 0.00 3.82
302 303 5.479306 TCTCTCAGTTTATAAGGTGTGTGC 58.521 41.667 0.00 0.00 0.00 4.57
303 304 4.242475 TCTCAGTTTATAAGGTGTGTGCG 58.758 43.478 0.00 0.00 0.00 5.34
304 305 3.994392 CTCAGTTTATAAGGTGTGTGCGT 59.006 43.478 0.00 0.00 0.00 5.24
305 306 5.047872 TCTCAGTTTATAAGGTGTGTGCGTA 60.048 40.000 0.00 0.00 0.00 4.42
306 307 5.726397 TCAGTTTATAAGGTGTGTGCGTAT 58.274 37.500 0.00 0.00 0.00 3.06
307 308 5.808540 TCAGTTTATAAGGTGTGTGCGTATC 59.191 40.000 0.00 0.00 0.00 2.24
308 309 5.006358 CAGTTTATAAGGTGTGTGCGTATCC 59.994 44.000 0.00 0.00 0.00 2.59
309 310 2.614829 ATAAGGTGTGTGCGTATCCC 57.385 50.000 0.00 0.00 0.00 3.85
310 311 1.563924 TAAGGTGTGTGCGTATCCCT 58.436 50.000 0.00 0.00 0.00 4.20
311 312 1.563924 AAGGTGTGTGCGTATCCCTA 58.436 50.000 0.00 0.00 0.00 3.53
312 313 1.789523 AGGTGTGTGCGTATCCCTAT 58.210 50.000 0.00 0.00 0.00 2.57
313 314 1.412710 AGGTGTGTGCGTATCCCTATG 59.587 52.381 0.00 0.00 0.00 2.23
314 315 1.138266 GGTGTGTGCGTATCCCTATGT 59.862 52.381 0.00 0.00 0.00 2.29
315 316 2.470821 GTGTGTGCGTATCCCTATGTC 58.529 52.381 0.00 0.00 0.00 3.06
316 317 1.066454 TGTGTGCGTATCCCTATGTCG 59.934 52.381 0.00 0.00 0.00 4.35
317 318 1.066605 GTGTGCGTATCCCTATGTCGT 59.933 52.381 0.00 0.00 0.00 4.34
318 319 1.335810 TGTGCGTATCCCTATGTCGTC 59.664 52.381 0.00 0.00 0.00 4.20
319 320 1.335810 GTGCGTATCCCTATGTCGTCA 59.664 52.381 0.00 0.00 0.00 4.35
320 321 2.025898 TGCGTATCCCTATGTCGTCAA 58.974 47.619 0.00 0.00 0.00 3.18
321 322 2.626266 TGCGTATCCCTATGTCGTCAAT 59.374 45.455 0.00 0.00 0.00 2.57
322 323 3.069016 TGCGTATCCCTATGTCGTCAATT 59.931 43.478 0.00 0.00 0.00 2.32
323 324 4.056050 GCGTATCCCTATGTCGTCAATTT 58.944 43.478 0.00 0.00 0.00 1.82
324 325 4.084537 GCGTATCCCTATGTCGTCAATTTG 60.085 45.833 0.00 0.00 0.00 2.32
325 326 5.286438 CGTATCCCTATGTCGTCAATTTGA 58.714 41.667 0.00 0.00 0.00 2.69
326 327 5.926542 CGTATCCCTATGTCGTCAATTTGAT 59.073 40.000 1.78 0.00 0.00 2.57
327 328 6.089551 CGTATCCCTATGTCGTCAATTTGATC 59.910 42.308 1.78 0.00 0.00 2.92
328 329 5.351948 TCCCTATGTCGTCAATTTGATCA 57.648 39.130 1.78 0.00 0.00 2.92
329 330 5.739959 TCCCTATGTCGTCAATTTGATCAA 58.260 37.500 3.38 3.38 0.00 2.57
330 331 5.584649 TCCCTATGTCGTCAATTTGATCAAC 59.415 40.000 7.89 0.00 0.00 3.18
331 332 5.220854 CCCTATGTCGTCAATTTGATCAACC 60.221 44.000 7.89 0.00 0.00 3.77
332 333 5.586243 CCTATGTCGTCAATTTGATCAACCT 59.414 40.000 7.89 0.00 0.00 3.50
333 334 6.761242 CCTATGTCGTCAATTTGATCAACCTA 59.239 38.462 7.89 0.00 0.00 3.08
334 335 7.279981 CCTATGTCGTCAATTTGATCAACCTAA 59.720 37.037 7.89 0.00 0.00 2.69
335 336 6.236017 TGTCGTCAATTTGATCAACCTAAC 57.764 37.500 7.89 4.10 0.00 2.34
336 337 5.760743 TGTCGTCAATTTGATCAACCTAACA 59.239 36.000 7.89 4.14 0.00 2.41
337 338 6.429692 TGTCGTCAATTTGATCAACCTAACAT 59.570 34.615 7.89 0.00 0.00 2.71
338 339 7.604545 TGTCGTCAATTTGATCAACCTAACATA 59.395 33.333 7.89 0.00 0.00 2.29
339 340 8.447833 GTCGTCAATTTGATCAACCTAACATAA 58.552 33.333 7.89 0.00 0.00 1.90
340 341 8.664798 TCGTCAATTTGATCAACCTAACATAAG 58.335 33.333 7.89 0.00 0.00 1.73
341 342 8.450964 CGTCAATTTGATCAACCTAACATAAGT 58.549 33.333 7.89 0.00 0.00 2.24
342 343 9.774742 GTCAATTTGATCAACCTAACATAAGTC 57.225 33.333 7.89 0.00 0.00 3.01
343 344 9.513906 TCAATTTGATCAACCTAACATAAGTCA 57.486 29.630 7.89 0.00 0.00 3.41
450 451 0.389296 TTCGGTCGCACGTCATGAAT 60.389 50.000 0.00 0.00 34.94 2.57
477 478 5.901552 GGTAATTGTACCCACATTGATTGG 58.098 41.667 0.00 0.00 43.73 3.16
478 479 5.654650 GGTAATTGTACCCACATTGATTGGA 59.345 40.000 0.00 0.00 43.73 3.53
479 480 6.153680 GGTAATTGTACCCACATTGATTGGAA 59.846 38.462 0.00 0.00 43.73 3.53
480 481 6.872585 AATTGTACCCACATTGATTGGAAT 57.127 33.333 0.00 0.00 36.02 3.01
481 482 6.872585 ATTGTACCCACATTGATTGGAATT 57.127 33.333 0.00 0.00 36.02 2.17
483 484 7.782897 TTGTACCCACATTGATTGGAATTAA 57.217 32.000 0.00 0.00 36.02 1.40
485 486 8.372877 TGTACCCACATTGATTGGAATTAATT 57.627 30.769 0.00 0.00 36.02 1.40
511 514 1.227674 GGGATTAGGACAGGCTGCG 60.228 63.158 15.89 0.00 0.00 5.18
527 530 1.227205 GCGGAGTGGAGCAGATGAG 60.227 63.158 0.00 0.00 0.00 2.90
528 531 1.670949 GCGGAGTGGAGCAGATGAGA 61.671 60.000 0.00 0.00 0.00 3.27
529 532 0.385029 CGGAGTGGAGCAGATGAGAG 59.615 60.000 0.00 0.00 0.00 3.20
530 533 0.104671 GGAGTGGAGCAGATGAGAGC 59.895 60.000 0.00 0.00 0.00 4.09
531 534 0.822811 GAGTGGAGCAGATGAGAGCA 59.177 55.000 0.00 0.00 0.00 4.26
532 535 0.825410 AGTGGAGCAGATGAGAGCAG 59.175 55.000 0.00 0.00 0.00 4.24
533 536 0.822811 GTGGAGCAGATGAGAGCAGA 59.177 55.000 0.00 0.00 0.00 4.26
534 537 1.112950 TGGAGCAGATGAGAGCAGAG 58.887 55.000 0.00 0.00 0.00 3.35
571 574 0.383231 ACAAAAGCAGCAGAGCACAC 59.617 50.000 0.00 0.00 36.85 3.82
590 598 1.261238 CCACCTCACCTCACTCCTCC 61.261 65.000 0.00 0.00 0.00 4.30
592 600 1.687493 CCTCACCTCACTCCTCCCC 60.687 68.421 0.00 0.00 0.00 4.81
593 601 1.687493 CTCACCTCACTCCTCCCCC 60.687 68.421 0.00 0.00 0.00 5.40
628 639 2.561478 TCTTCTCCCTCCAAAAACCG 57.439 50.000 0.00 0.00 0.00 4.44
662 673 1.068434 CCAAACACCACCACCATCAAC 59.932 52.381 0.00 0.00 0.00 3.18
663 674 2.031120 CAAACACCACCACCATCAACT 58.969 47.619 0.00 0.00 0.00 3.16
668 679 1.582968 CACCACCATCAACTGCAGC 59.417 57.895 15.27 0.00 0.00 5.25
669 680 1.604593 ACCACCATCAACTGCAGCC 60.605 57.895 15.27 0.00 0.00 4.85
670 681 2.345760 CCACCATCAACTGCAGCCC 61.346 63.158 15.27 0.00 0.00 5.19
671 682 1.604308 CACCATCAACTGCAGCCCA 60.604 57.895 15.27 0.00 0.00 5.36
709 720 2.608825 CGCGAGATCCGATCCGACT 61.609 63.158 18.00 0.00 41.76 4.18
710 721 1.208103 GCGAGATCCGATCCGACTC 59.792 63.158 18.00 4.89 41.76 3.36
712 723 1.870383 GAGATCCGATCCGACTCCG 59.130 63.158 4.67 0.00 0.00 4.63
715 726 0.885596 GATCCGATCCGACTCCGACT 60.886 60.000 0.00 0.00 38.22 4.18
716 727 0.885596 ATCCGATCCGACTCCGACTC 60.886 60.000 0.00 0.00 38.22 3.36
717 728 2.544698 CCGATCCGACTCCGACTCC 61.545 68.421 0.00 0.00 38.22 3.85
718 729 2.883468 CGATCCGACTCCGACTCCG 61.883 68.421 0.00 0.00 38.22 4.63
728 739 4.504916 CGACTCCGGGCAGCAGAG 62.505 72.222 0.00 0.00 0.00 3.35
791 820 1.452108 CCTGCCGTTTGATCCTCCC 60.452 63.158 0.00 0.00 0.00 4.30
803 849 0.036671 ATCCTCCCGGTTCGTGAAAC 60.037 55.000 0.00 0.00 37.12 2.78
814 860 0.399075 TCGTGAAACCTTTCCTCCCC 59.601 55.000 0.00 0.00 36.36 4.81
851 897 3.056328 GGTGCTCGTTCTTGCCCC 61.056 66.667 0.00 0.00 0.00 5.80
870 916 4.267503 GAGATCCGTCCGGTCCGC 62.268 72.222 5.50 0.00 36.47 5.54
891 937 2.733945 GAGCAGCGGGATCTCTCC 59.266 66.667 0.00 0.00 41.26 3.71
946 995 3.298686 AGATCCGGGATTTCCTTTTCC 57.701 47.619 11.57 0.00 35.95 3.13
947 996 1.947456 GATCCGGGATTTCCTTTTCCG 59.053 52.381 11.57 0.00 40.32 4.30
949 998 3.259592 CGGGATTTCCTTTTCCGGT 57.740 52.632 0.00 0.00 37.35 5.28
950 999 1.541379 CGGGATTTCCTTTTCCGGTT 58.459 50.000 0.00 0.00 37.35 4.44
951 1000 1.471287 CGGGATTTCCTTTTCCGGTTC 59.529 52.381 0.00 0.00 37.35 3.62
965 1024 3.343421 GTTCGGTTTCGCCAGCGT 61.343 61.111 12.32 0.00 38.78 5.07
1762 1846 1.160870 ATGGTGGTCAGGGACAGGA 59.839 57.895 0.00 0.00 33.68 3.86
2140 2228 7.507797 AGGAAGAGATATATCATCCCTTTGG 57.492 40.000 16.07 0.00 30.98 3.28
2183 2271 4.859304 TCATTTCTGCAATGCAAAGTCT 57.141 36.364 9.92 0.00 42.06 3.24
2184 2272 5.204409 TCATTTCTGCAATGCAAAGTCTT 57.796 34.783 9.92 0.00 42.06 3.01
2185 2273 6.330004 TCATTTCTGCAATGCAAAGTCTTA 57.670 33.333 9.92 0.00 42.06 2.10
2186 2274 6.384224 TCATTTCTGCAATGCAAAGTCTTAG 58.616 36.000 9.92 0.00 42.06 2.18
2199 2287 8.547967 TGCAAAGTCTTAGTATCAGGTTTTAG 57.452 34.615 0.00 0.00 0.00 1.85
2244 2332 2.740981 CTGTGCCAAGTCTCATCAGTTC 59.259 50.000 0.00 0.00 0.00 3.01
2258 2347 6.596888 TCTCATCAGTTCTTTAGGCATTTCAG 59.403 38.462 0.00 0.00 0.00 3.02
2392 2487 6.381133 TGTCCTTATCTTGCAGTTCAGATAGA 59.619 38.462 6.07 0.00 0.00 1.98
2393 2488 7.070447 TGTCCTTATCTTGCAGTTCAGATAGAT 59.930 37.037 6.07 2.95 0.00 1.98
2394 2489 8.580720 GTCCTTATCTTGCAGTTCAGATAGATA 58.419 37.037 6.07 2.10 0.00 1.98
2406 2501 8.095792 CAGTTCAGATAGATAGCATCAAAGGAT 58.904 37.037 0.00 0.00 0.00 3.24
2409 2504 7.780064 TCAGATAGATAGCATCAAAGGATAGC 58.220 38.462 0.00 0.00 30.87 2.97
2415 2510 4.913335 AGCATCAAAGGATAGCATTGTG 57.087 40.909 0.00 0.00 33.06 3.33
2416 2511 4.275810 AGCATCAAAGGATAGCATTGTGT 58.724 39.130 0.00 0.00 33.06 3.72
2426 2521 4.142315 GGATAGCATTGTGTTGCAGTGAAT 60.142 41.667 0.00 0.00 45.23 2.57
2427 2522 5.066375 GGATAGCATTGTGTTGCAGTGAATA 59.934 40.000 0.00 0.00 45.23 1.75
2428 2523 4.164822 AGCATTGTGTTGCAGTGAATAC 57.835 40.909 0.00 0.00 45.23 1.89
2429 2524 3.822735 AGCATTGTGTTGCAGTGAATACT 59.177 39.130 0.00 0.00 45.23 2.12
2430 2525 5.003160 AGCATTGTGTTGCAGTGAATACTA 58.997 37.500 0.00 0.00 45.23 1.82
2431 2526 5.122869 AGCATTGTGTTGCAGTGAATACTAG 59.877 40.000 0.00 0.00 45.23 2.57
2478 2573 8.757982 AGTAAAAGGATGCTGATGATATTGTT 57.242 30.769 0.00 0.00 0.00 2.83
2479 2574 8.844244 AGTAAAAGGATGCTGATGATATTGTTC 58.156 33.333 0.00 0.00 0.00 3.18
2480 2575 5.936686 AAGGATGCTGATGATATTGTTCG 57.063 39.130 0.00 0.00 0.00 3.95
2481 2576 4.321718 AGGATGCTGATGATATTGTTCGG 58.678 43.478 0.00 0.00 0.00 4.30
2482 2577 3.438087 GGATGCTGATGATATTGTTCGGG 59.562 47.826 0.00 0.00 0.00 5.14
2483 2578 3.558931 TGCTGATGATATTGTTCGGGT 57.441 42.857 0.00 0.00 0.00 5.28
2484 2579 3.205338 TGCTGATGATATTGTTCGGGTG 58.795 45.455 0.00 0.00 0.00 4.61
2494 2589 2.838693 TTCGGGTGTCGGGTGTCA 60.839 61.111 0.00 0.00 39.77 3.58
2504 2599 0.179067 TCGGGTGTCAGTTGGTGAAC 60.179 55.000 0.00 0.00 36.74 3.18
2517 2612 3.201353 TGGTGAACGGAAATCTCACAA 57.799 42.857 4.05 0.00 41.03 3.33
2603 2702 1.963515 CCCCTTTGTGGTTTCTTCAGG 59.036 52.381 0.00 0.00 0.00 3.86
2655 2757 3.723348 GTTGTTCCGTCGCTGGCC 61.723 66.667 0.00 0.00 0.00 5.36
2707 2809 3.427909 GCTCAGACTCAGAGAGTGATGTG 60.428 52.174 3.79 5.75 43.53 3.21
2792 2898 5.753438 GGTGTTTTTCCTTTCCACTTTGATC 59.247 40.000 0.00 0.00 0.00 2.92
3002 3115 4.707105 TGTATCATGGCACCACTATCTTG 58.293 43.478 0.00 0.00 0.00 3.02
3007 3120 1.073763 TGGCACCACTATCTTGTTGCT 59.926 47.619 0.00 0.00 0.00 3.91
3008 3121 2.162681 GGCACCACTATCTTGTTGCTT 58.837 47.619 0.00 0.00 0.00 3.91
3009 3122 2.558359 GGCACCACTATCTTGTTGCTTT 59.442 45.455 0.00 0.00 0.00 3.51
3010 3123 3.568538 GCACCACTATCTTGTTGCTTTG 58.431 45.455 0.00 0.00 0.00 2.77
3011 3124 3.253188 GCACCACTATCTTGTTGCTTTGA 59.747 43.478 0.00 0.00 0.00 2.69
3012 3125 4.261572 GCACCACTATCTTGTTGCTTTGAA 60.262 41.667 0.00 0.00 0.00 2.69
3013 3126 5.215160 CACCACTATCTTGTTGCTTTGAAC 58.785 41.667 0.00 0.00 0.00 3.18
3014 3127 4.278419 ACCACTATCTTGTTGCTTTGAACC 59.722 41.667 0.00 0.00 0.00 3.62
3015 3128 4.321230 CCACTATCTTGTTGCTTTGAACCC 60.321 45.833 0.00 0.00 0.00 4.11
3016 3129 4.278170 CACTATCTTGTTGCTTTGAACCCA 59.722 41.667 0.00 0.00 0.00 4.51
3017 3130 4.892934 ACTATCTTGTTGCTTTGAACCCAA 59.107 37.500 0.00 0.00 0.00 4.12
3018 3131 3.799281 TCTTGTTGCTTTGAACCCAAG 57.201 42.857 0.00 0.00 33.23 3.61
3019 3132 3.096092 TCTTGTTGCTTTGAACCCAAGT 58.904 40.909 0.00 0.00 33.23 3.16
3020 3133 3.513515 TCTTGTTGCTTTGAACCCAAGTT 59.486 39.130 0.00 0.00 39.54 2.66
3021 3134 3.244033 TGTTGCTTTGAACCCAAGTTG 57.756 42.857 0.00 0.00 35.94 3.16
3022 3135 1.933181 GTTGCTTTGAACCCAAGTTGC 59.067 47.619 0.00 0.00 35.94 4.17
3023 3136 1.484038 TGCTTTGAACCCAAGTTGCT 58.516 45.000 0.00 0.00 35.94 3.91
3024 3137 1.830477 TGCTTTGAACCCAAGTTGCTT 59.170 42.857 0.00 0.00 35.94 3.91
3025 3138 3.027412 TGCTTTGAACCCAAGTTGCTTA 58.973 40.909 0.00 0.00 35.94 3.09
3026 3139 3.640967 TGCTTTGAACCCAAGTTGCTTAT 59.359 39.130 0.00 0.00 35.94 1.73
3027 3140 4.830046 TGCTTTGAACCCAAGTTGCTTATA 59.170 37.500 0.00 0.00 35.94 0.98
3028 3141 5.480073 TGCTTTGAACCCAAGTTGCTTATAT 59.520 36.000 0.00 0.00 35.94 0.86
3029 3142 6.014669 TGCTTTGAACCCAAGTTGCTTATATT 60.015 34.615 0.00 0.00 35.94 1.28
3030 3143 6.531594 GCTTTGAACCCAAGTTGCTTATATTC 59.468 38.462 0.00 0.00 35.94 1.75
3031 3144 7.577616 GCTTTGAACCCAAGTTGCTTATATTCT 60.578 37.037 0.00 0.00 35.94 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.087892 CAGGACAGCCACCTCCGG 62.088 72.222 0.00 0.00 35.35 5.14
5 6 4.767255 GCAGGACAGCCACCTCCG 62.767 72.222 0.00 0.00 35.35 4.63
6 7 4.767255 CGCAGGACAGCCACCTCC 62.767 72.222 0.00 0.00 35.35 4.30
23 24 1.845809 CGAATGCGGCTTGATAGGCC 61.846 60.000 0.00 0.00 43.72 5.19
24 25 1.571460 CGAATGCGGCTTGATAGGC 59.429 57.895 0.00 0.00 43.21 3.93
35 36 2.180204 CCTAGCCCAACCGAATGCG 61.180 63.158 0.00 0.00 37.24 4.73
36 37 2.481471 GCCTAGCCCAACCGAATGC 61.481 63.158 0.00 0.00 0.00 3.56
37 38 1.823899 GGCCTAGCCCAACCGAATG 60.824 63.158 0.00 0.00 44.06 2.67
38 39 2.595655 GGCCTAGCCCAACCGAAT 59.404 61.111 0.00 0.00 44.06 3.34
48 49 3.232483 GACGGGGGTAGGCCTAGC 61.232 72.222 30.14 30.14 34.45 3.42
49 50 1.075450 AAGACGGGGGTAGGCCTAG 60.075 63.158 14.38 3.23 34.45 3.02
50 51 1.075748 GAAGACGGGGGTAGGCCTA 60.076 63.158 8.91 8.91 34.45 3.93
51 52 2.365237 GAAGACGGGGGTAGGCCT 60.365 66.667 11.78 11.78 34.45 5.19
52 53 1.632965 AATGAAGACGGGGGTAGGCC 61.633 60.000 0.00 0.00 0.00 5.19
53 54 1.125633 TAATGAAGACGGGGGTAGGC 58.874 55.000 0.00 0.00 0.00 3.93
54 55 2.158856 GGTTAATGAAGACGGGGGTAGG 60.159 54.545 0.00 0.00 0.00 3.18
55 56 2.770232 AGGTTAATGAAGACGGGGGTAG 59.230 50.000 0.00 0.00 0.00 3.18
56 57 2.767960 GAGGTTAATGAAGACGGGGGTA 59.232 50.000 0.00 0.00 0.00 3.69
57 58 1.558294 GAGGTTAATGAAGACGGGGGT 59.442 52.381 0.00 0.00 0.00 4.95
58 59 1.557832 TGAGGTTAATGAAGACGGGGG 59.442 52.381 0.00 0.00 0.00 5.40
59 60 2.629051 GTGAGGTTAATGAAGACGGGG 58.371 52.381 0.00 0.00 0.00 5.73
60 61 2.629051 GGTGAGGTTAATGAAGACGGG 58.371 52.381 0.00 0.00 0.00 5.28
61 62 2.268298 CGGTGAGGTTAATGAAGACGG 58.732 52.381 0.00 0.00 0.00 4.79
62 63 2.268298 CCGGTGAGGTTAATGAAGACG 58.732 52.381 0.00 0.00 34.51 4.18
63 64 2.007608 GCCGGTGAGGTTAATGAAGAC 58.992 52.381 1.90 0.00 43.70 3.01
64 65 1.404986 CGCCGGTGAGGTTAATGAAGA 60.405 52.381 10.20 0.00 43.70 2.87
65 66 1.006832 CGCCGGTGAGGTTAATGAAG 58.993 55.000 10.20 0.00 43.70 3.02
66 67 0.391927 CCGCCGGTGAGGTTAATGAA 60.392 55.000 18.79 0.00 43.70 2.57
67 68 1.219664 CCGCCGGTGAGGTTAATGA 59.780 57.895 18.79 0.00 43.70 2.57
68 69 1.087771 GTCCGCCGGTGAGGTTAATG 61.088 60.000 18.79 0.00 43.70 1.90
69 70 1.219935 GTCCGCCGGTGAGGTTAAT 59.780 57.895 18.79 0.00 43.70 1.40
70 71 2.658422 GTCCGCCGGTGAGGTTAA 59.342 61.111 18.79 0.00 43.70 2.01
71 72 3.751246 CGTCCGCCGGTGAGGTTA 61.751 66.667 18.79 0.00 43.70 2.85
81 82 1.996786 TATTGTCGTCCTCGTCCGCC 61.997 60.000 0.00 0.00 38.33 6.13
82 83 0.591741 CTATTGTCGTCCTCGTCCGC 60.592 60.000 0.00 0.00 38.33 5.54
83 84 0.591741 GCTATTGTCGTCCTCGTCCG 60.592 60.000 0.00 0.00 38.33 4.79
84 85 0.454600 TGCTATTGTCGTCCTCGTCC 59.545 55.000 0.00 0.00 38.33 4.79
85 86 2.186076 CTTGCTATTGTCGTCCTCGTC 58.814 52.381 0.00 0.00 38.33 4.20
86 87 1.135083 CCTTGCTATTGTCGTCCTCGT 60.135 52.381 0.00 0.00 38.33 4.18
87 88 1.560923 CCTTGCTATTGTCGTCCTCG 58.439 55.000 0.00 0.00 38.55 4.63
88 89 1.291132 GCCTTGCTATTGTCGTCCTC 58.709 55.000 0.00 0.00 0.00 3.71
89 90 0.107654 GGCCTTGCTATTGTCGTCCT 60.108 55.000 0.00 0.00 0.00 3.85
90 91 0.392461 TGGCCTTGCTATTGTCGTCC 60.392 55.000 3.32 0.00 0.00 4.79
91 92 1.398390 CTTGGCCTTGCTATTGTCGTC 59.602 52.381 3.32 0.00 0.00 4.20
92 93 1.453155 CTTGGCCTTGCTATTGTCGT 58.547 50.000 3.32 0.00 0.00 4.34
93 94 0.734889 CCTTGGCCTTGCTATTGTCG 59.265 55.000 3.32 0.00 0.00 4.35
94 95 0.457443 GCCTTGGCCTTGCTATTGTC 59.543 55.000 3.32 0.00 0.00 3.18
95 96 0.251742 TGCCTTGGCCTTGCTATTGT 60.252 50.000 3.32 0.00 0.00 2.71
96 97 0.896923 TTGCCTTGGCCTTGCTATTG 59.103 50.000 3.32 0.00 0.00 1.90
97 98 1.870064 ATTGCCTTGGCCTTGCTATT 58.130 45.000 3.32 0.00 0.00 1.73
98 99 1.870064 AATTGCCTTGGCCTTGCTAT 58.130 45.000 3.32 3.53 0.00 2.97
99 100 1.643310 AAATTGCCTTGGCCTTGCTA 58.357 45.000 3.32 0.92 0.00 3.49
100 101 1.276138 GTAAATTGCCTTGGCCTTGCT 59.724 47.619 3.32 0.00 0.00 3.91
101 102 1.276138 AGTAAATTGCCTTGGCCTTGC 59.724 47.619 3.32 4.33 0.00 4.01
102 103 3.131046 CCTAGTAAATTGCCTTGGCCTTG 59.869 47.826 3.32 0.00 0.00 3.61
103 104 3.365472 CCTAGTAAATTGCCTTGGCCTT 58.635 45.455 3.32 2.98 0.00 4.35
104 105 2.358195 CCCTAGTAAATTGCCTTGGCCT 60.358 50.000 3.32 0.42 0.00 5.19
105 106 2.031870 CCCTAGTAAATTGCCTTGGCC 58.968 52.381 9.35 0.00 0.00 5.36
106 107 1.409064 GCCCTAGTAAATTGCCTTGGC 59.591 52.381 4.43 4.43 0.00 4.52
107 108 2.689983 CTGCCCTAGTAAATTGCCTTGG 59.310 50.000 0.00 0.07 0.00 3.61
108 109 3.129287 CACTGCCCTAGTAAATTGCCTTG 59.871 47.826 0.00 0.00 37.60 3.61
109 110 3.245264 ACACTGCCCTAGTAAATTGCCTT 60.245 43.478 0.00 0.00 37.60 4.35
110 111 2.308866 ACACTGCCCTAGTAAATTGCCT 59.691 45.455 0.00 0.00 37.60 4.75
111 112 2.423538 CACACTGCCCTAGTAAATTGCC 59.576 50.000 0.00 0.00 37.60 4.52
112 113 2.159379 GCACACTGCCCTAGTAAATTGC 60.159 50.000 0.00 0.00 37.60 3.56
113 114 2.095853 CGCACACTGCCCTAGTAAATTG 59.904 50.000 0.00 0.00 41.12 2.32
114 115 2.356135 CGCACACTGCCCTAGTAAATT 58.644 47.619 0.00 0.00 41.12 1.82
115 116 1.406887 CCGCACACTGCCCTAGTAAAT 60.407 52.381 0.00 0.00 41.12 1.40
116 117 0.036765 CCGCACACTGCCCTAGTAAA 60.037 55.000 0.00 0.00 41.12 2.01
117 118 1.594833 CCGCACACTGCCCTAGTAA 59.405 57.895 0.00 0.00 41.12 2.24
118 119 2.355986 CCCGCACACTGCCCTAGTA 61.356 63.158 0.00 0.00 41.12 1.82
119 120 3.706373 CCCGCACACTGCCCTAGT 61.706 66.667 0.00 0.00 41.12 2.57
125 126 1.586154 ATAAACTGCCCGCACACTGC 61.586 55.000 0.00 0.00 40.69 4.40
126 127 0.881118 AATAAACTGCCCGCACACTG 59.119 50.000 0.00 0.00 0.00 3.66
127 128 1.539827 GAAATAAACTGCCCGCACACT 59.460 47.619 0.00 0.00 0.00 3.55
128 129 1.539827 AGAAATAAACTGCCCGCACAC 59.460 47.619 0.00 0.00 0.00 3.82
129 130 1.904287 AGAAATAAACTGCCCGCACA 58.096 45.000 0.00 0.00 0.00 4.57
130 131 3.297830 AAAGAAATAAACTGCCCGCAC 57.702 42.857 0.00 0.00 0.00 5.34
131 132 4.329462 AAAAAGAAATAAACTGCCCGCA 57.671 36.364 0.00 0.00 0.00 5.69
166 167 8.562052 CCAACGTAAAAGTCCACTTAAATAACT 58.438 33.333 0.00 0.00 34.61 2.24
167 168 8.558700 TCCAACGTAAAAGTCCACTTAAATAAC 58.441 33.333 0.00 0.00 34.61 1.89
168 169 8.674263 TCCAACGTAAAAGTCCACTTAAATAA 57.326 30.769 0.00 0.00 34.61 1.40
169 170 7.933033 ACTCCAACGTAAAAGTCCACTTAAATA 59.067 33.333 0.00 0.00 34.61 1.40
170 171 6.769341 ACTCCAACGTAAAAGTCCACTTAAAT 59.231 34.615 0.00 0.00 34.61 1.40
171 172 6.114767 ACTCCAACGTAAAAGTCCACTTAAA 58.885 36.000 0.00 0.00 34.61 1.52
172 173 5.673514 ACTCCAACGTAAAAGTCCACTTAA 58.326 37.500 0.00 0.00 34.61 1.85
173 174 5.280654 ACTCCAACGTAAAAGTCCACTTA 57.719 39.130 0.00 0.00 34.61 2.24
174 175 4.146745 ACTCCAACGTAAAAGTCCACTT 57.853 40.909 0.00 0.00 37.91 3.16
175 176 3.832615 ACTCCAACGTAAAAGTCCACT 57.167 42.857 0.00 0.00 0.00 4.00
176 177 3.002965 CCAACTCCAACGTAAAAGTCCAC 59.997 47.826 0.00 0.00 0.00 4.02
177 178 3.118334 TCCAACTCCAACGTAAAAGTCCA 60.118 43.478 0.00 0.00 0.00 4.02
178 179 3.469739 TCCAACTCCAACGTAAAAGTCC 58.530 45.455 0.00 0.00 0.00 3.85
179 180 4.124970 ACTCCAACTCCAACGTAAAAGTC 58.875 43.478 0.00 0.00 0.00 3.01
180 181 4.146745 ACTCCAACTCCAACGTAAAAGT 57.853 40.909 0.00 0.00 0.00 2.66
181 182 4.788521 GCAACTCCAACTCCAACGTAAAAG 60.789 45.833 0.00 0.00 0.00 2.27
182 183 3.065648 GCAACTCCAACTCCAACGTAAAA 59.934 43.478 0.00 0.00 0.00 1.52
183 184 2.614983 GCAACTCCAACTCCAACGTAAA 59.385 45.455 0.00 0.00 0.00 2.01
184 185 2.158871 AGCAACTCCAACTCCAACGTAA 60.159 45.455 0.00 0.00 0.00 3.18
185 186 1.414919 AGCAACTCCAACTCCAACGTA 59.585 47.619 0.00 0.00 0.00 3.57
186 187 0.180406 AGCAACTCCAACTCCAACGT 59.820 50.000 0.00 0.00 0.00 3.99
187 188 0.868406 GAGCAACTCCAACTCCAACG 59.132 55.000 0.00 0.00 0.00 4.10
188 189 2.262423 AGAGCAACTCCAACTCCAAC 57.738 50.000 0.00 0.00 0.00 3.77
189 190 3.740115 GTAAGAGCAACTCCAACTCCAA 58.260 45.455 0.00 0.00 0.00 3.53
190 191 2.288825 CGTAAGAGCAACTCCAACTCCA 60.289 50.000 0.00 0.00 43.02 3.86
191 192 2.288886 ACGTAAGAGCAACTCCAACTCC 60.289 50.000 0.00 0.00 43.62 3.85
192 193 2.987821 GACGTAAGAGCAACTCCAACTC 59.012 50.000 0.00 0.00 43.62 3.01
193 194 2.628657 AGACGTAAGAGCAACTCCAACT 59.371 45.455 0.00 0.00 43.62 3.16
194 195 2.987821 GAGACGTAAGAGCAACTCCAAC 59.012 50.000 0.00 0.00 43.62 3.77
195 196 2.029290 GGAGACGTAAGAGCAACTCCAA 60.029 50.000 9.99 0.00 42.11 3.53
196 197 1.544691 GGAGACGTAAGAGCAACTCCA 59.455 52.381 9.99 0.00 42.11 3.86
197 198 1.544691 TGGAGACGTAAGAGCAACTCC 59.455 52.381 8.35 8.35 42.64 3.85
198 199 3.299340 TTGGAGACGTAAGAGCAACTC 57.701 47.619 0.00 0.00 43.62 3.01
199 200 3.746045 TTTGGAGACGTAAGAGCAACT 57.254 42.857 0.00 0.00 43.62 3.16
200 201 5.147162 CAAATTTGGAGACGTAAGAGCAAC 58.853 41.667 10.49 0.00 43.62 4.17
201 202 4.320202 GCAAATTTGGAGACGTAAGAGCAA 60.320 41.667 19.47 0.00 43.62 3.91
202 203 3.188460 GCAAATTTGGAGACGTAAGAGCA 59.812 43.478 19.47 0.00 43.62 4.26
203 204 3.188460 TGCAAATTTGGAGACGTAAGAGC 59.812 43.478 19.47 1.15 43.62 4.09
204 205 5.122239 TGATGCAAATTTGGAGACGTAAGAG 59.878 40.000 19.47 0.00 34.24 2.85
205 206 5.000591 TGATGCAAATTTGGAGACGTAAGA 58.999 37.500 19.47 0.00 34.24 2.10
206 207 5.295431 TGATGCAAATTTGGAGACGTAAG 57.705 39.130 19.47 0.00 35.83 2.34
207 208 5.647658 AGATGATGCAAATTTGGAGACGTAA 59.352 36.000 19.47 0.00 30.13 3.18
208 209 5.185454 AGATGATGCAAATTTGGAGACGTA 58.815 37.500 19.47 3.89 30.13 3.57
209 210 4.012374 AGATGATGCAAATTTGGAGACGT 58.988 39.130 19.47 15.09 30.13 4.34
210 211 4.627611 AGATGATGCAAATTTGGAGACG 57.372 40.909 19.47 0.00 30.13 4.18
211 212 6.921857 CCAATAGATGATGCAAATTTGGAGAC 59.078 38.462 19.47 14.58 30.13 3.36
212 213 6.834969 TCCAATAGATGATGCAAATTTGGAGA 59.165 34.615 19.47 8.31 30.13 3.71
213 214 7.046292 TCCAATAGATGATGCAAATTTGGAG 57.954 36.000 19.47 2.01 30.13 3.86
214 215 6.461927 GCTCCAATAGATGATGCAAATTTGGA 60.462 38.462 19.47 17.40 0.00 3.53
215 216 5.694910 GCTCCAATAGATGATGCAAATTTGG 59.305 40.000 19.47 0.00 0.00 3.28
216 217 6.513180 AGCTCCAATAGATGATGCAAATTTG 58.487 36.000 14.03 14.03 32.15 2.32
217 218 6.239232 GGAGCTCCAATAGATGATGCAAATTT 60.239 38.462 28.43 0.00 35.64 1.82
218 219 5.243283 GGAGCTCCAATAGATGATGCAAATT 59.757 40.000 28.43 0.00 35.64 1.82
219 220 4.765856 GGAGCTCCAATAGATGATGCAAAT 59.234 41.667 28.43 0.00 35.64 2.32
220 221 4.139786 GGAGCTCCAATAGATGATGCAAA 58.860 43.478 28.43 0.00 35.64 3.68
221 222 3.136992 TGGAGCTCCAATAGATGATGCAA 59.863 43.478 33.41 4.06 44.35 4.08
222 223 2.707257 TGGAGCTCCAATAGATGATGCA 59.293 45.455 33.41 4.56 44.35 3.96
223 224 3.413846 TGGAGCTCCAATAGATGATGC 57.586 47.619 33.41 1.63 44.35 3.91
239 240 1.750399 CCTGGGGAAATGCGTGGAG 60.750 63.158 0.00 0.00 0.00 3.86
240 241 1.570857 ATCCTGGGGAAATGCGTGGA 61.571 55.000 0.00 0.00 34.34 4.02
241 242 0.684153 AATCCTGGGGAAATGCGTGG 60.684 55.000 0.00 0.00 34.34 4.94
242 243 2.051334 TAATCCTGGGGAAATGCGTG 57.949 50.000 0.00 0.00 34.34 5.34
243 244 3.394606 ACTATAATCCTGGGGAAATGCGT 59.605 43.478 0.00 0.00 34.34 5.24
244 245 4.021102 ACTATAATCCTGGGGAAATGCG 57.979 45.455 0.00 0.00 34.34 4.73
245 246 5.940470 CAGTACTATAATCCTGGGGAAATGC 59.060 44.000 0.00 0.00 34.34 3.56
246 247 7.079451 ACAGTACTATAATCCTGGGGAAATG 57.921 40.000 0.00 0.00 34.34 2.32
247 248 8.017251 AGTACAGTACTATAATCCTGGGGAAAT 58.983 37.037 11.84 0.00 37.23 2.17
248 249 7.367828 AGTACAGTACTATAATCCTGGGGAAA 58.632 38.462 11.84 0.00 37.23 3.13
249 250 6.930475 AGTACAGTACTATAATCCTGGGGAA 58.070 40.000 11.84 0.00 37.23 3.97
250 251 6.468359 GGAGTACAGTACTATAATCCTGGGGA 60.468 46.154 18.22 0.00 39.59 4.81
251 252 5.715753 GGAGTACAGTACTATAATCCTGGGG 59.284 48.000 18.22 0.00 39.59 4.96
252 253 6.553857 AGGAGTACAGTACTATAATCCTGGG 58.446 44.000 25.31 0.00 42.72 4.45
253 254 7.945664 AGAAGGAGTACAGTACTATAATCCTGG 59.054 40.741 26.29 0.51 43.36 4.45
254 255 8.927675 AGAAGGAGTACAGTACTATAATCCTG 57.072 38.462 26.29 2.16 43.36 3.86
255 256 8.951541 AGAGAAGGAGTACAGTACTATAATCCT 58.048 37.037 21.56 21.56 45.46 3.24
256 257 9.223099 GAGAGAAGGAGTACAGTACTATAATCC 57.777 40.741 17.90 17.90 39.59 3.01
259 260 8.990203 TGAGAGAGAAGGAGTACAGTACTATAA 58.010 37.037 13.51 0.00 39.59 0.98
260 261 8.550280 TGAGAGAGAAGGAGTACAGTACTATA 57.450 38.462 13.51 0.00 39.59 1.31
261 262 7.126726 ACTGAGAGAGAAGGAGTACAGTACTAT 59.873 40.741 13.51 2.79 39.59 2.12
262 263 6.441284 ACTGAGAGAGAAGGAGTACAGTACTA 59.559 42.308 13.51 0.00 39.59 1.82
263 264 5.249852 ACTGAGAGAGAAGGAGTACAGTACT 59.750 44.000 13.41 13.41 42.86 2.73
264 265 5.493809 ACTGAGAGAGAAGGAGTACAGTAC 58.506 45.833 2.05 2.05 35.95 2.73
265 266 5.765576 ACTGAGAGAGAAGGAGTACAGTA 57.234 43.478 0.00 0.00 35.95 2.74
266 267 4.650972 ACTGAGAGAGAAGGAGTACAGT 57.349 45.455 0.00 0.00 33.47 3.55
267 268 5.975693 AAACTGAGAGAGAAGGAGTACAG 57.024 43.478 0.00 0.00 0.00 2.74
268 269 9.179909 CTTATAAACTGAGAGAGAAGGAGTACA 57.820 37.037 0.00 0.00 0.00 2.90
269 270 8.626526 CCTTATAAACTGAGAGAGAAGGAGTAC 58.373 40.741 0.00 0.00 35.27 2.73
270 271 8.337739 ACCTTATAAACTGAGAGAGAAGGAGTA 58.662 37.037 11.36 0.00 36.52 2.59
271 272 7.123547 CACCTTATAAACTGAGAGAGAAGGAGT 59.876 40.741 11.36 0.00 36.52 3.85
272 273 7.123547 ACACCTTATAAACTGAGAGAGAAGGAG 59.876 40.741 11.36 7.46 36.52 3.69
273 274 6.954684 ACACCTTATAAACTGAGAGAGAAGGA 59.045 38.462 11.36 0.00 36.52 3.36
274 275 7.038659 CACACCTTATAAACTGAGAGAGAAGG 58.961 42.308 0.00 0.00 38.52 3.46
275 276 7.543868 CACACACCTTATAAACTGAGAGAGAAG 59.456 40.741 0.00 0.00 0.00 2.85
276 277 7.378966 CACACACCTTATAAACTGAGAGAGAA 58.621 38.462 0.00 0.00 0.00 2.87
277 278 6.572509 GCACACACCTTATAAACTGAGAGAGA 60.573 42.308 0.00 0.00 0.00 3.10
278 279 5.578727 GCACACACCTTATAAACTGAGAGAG 59.421 44.000 0.00 0.00 0.00 3.20
279 280 5.479306 GCACACACCTTATAAACTGAGAGA 58.521 41.667 0.00 0.00 0.00 3.10
280 281 4.327357 CGCACACACCTTATAAACTGAGAG 59.673 45.833 0.00 0.00 0.00 3.20
281 282 4.242475 CGCACACACCTTATAAACTGAGA 58.758 43.478 0.00 0.00 0.00 3.27
282 283 3.994392 ACGCACACACCTTATAAACTGAG 59.006 43.478 0.00 0.00 0.00 3.35
283 284 3.997762 ACGCACACACCTTATAAACTGA 58.002 40.909 0.00 0.00 0.00 3.41
284 285 5.006358 GGATACGCACACACCTTATAAACTG 59.994 44.000 0.00 0.00 0.00 3.16
285 286 5.114081 GGATACGCACACACCTTATAAACT 58.886 41.667 0.00 0.00 0.00 2.66
286 287 4.271776 GGGATACGCACACACCTTATAAAC 59.728 45.833 0.00 0.00 37.60 2.01
287 288 4.162698 AGGGATACGCACACACCTTATAAA 59.837 41.667 0.00 0.00 37.60 1.40
288 289 3.707611 AGGGATACGCACACACCTTATAA 59.292 43.478 0.00 0.00 37.60 0.98
289 290 3.302161 AGGGATACGCACACACCTTATA 58.698 45.455 0.00 0.00 37.60 0.98
290 291 2.116238 AGGGATACGCACACACCTTAT 58.884 47.619 0.00 0.00 37.60 1.73
291 292 1.563924 AGGGATACGCACACACCTTA 58.436 50.000 0.00 0.00 37.60 2.69
292 293 1.563924 TAGGGATACGCACACACCTT 58.436 50.000 0.00 0.00 37.60 3.50
293 294 1.412710 CATAGGGATACGCACACACCT 59.587 52.381 0.00 0.00 37.60 4.00
294 295 1.138266 ACATAGGGATACGCACACACC 59.862 52.381 0.00 0.00 37.60 4.16
295 296 2.470821 GACATAGGGATACGCACACAC 58.529 52.381 0.00 0.00 37.60 3.82
296 297 1.066454 CGACATAGGGATACGCACACA 59.934 52.381 0.00 0.00 37.60 3.72
297 298 1.066605 ACGACATAGGGATACGCACAC 59.933 52.381 0.00 0.00 37.60 3.82
298 299 1.335810 GACGACATAGGGATACGCACA 59.664 52.381 0.00 0.00 37.60 4.57
299 300 1.335810 TGACGACATAGGGATACGCAC 59.664 52.381 0.00 0.00 37.60 5.34
300 301 1.682740 TGACGACATAGGGATACGCA 58.317 50.000 0.00 0.00 37.60 5.24
301 302 2.787601 TTGACGACATAGGGATACGC 57.212 50.000 0.00 0.00 37.60 4.42
302 303 5.286438 TCAAATTGACGACATAGGGATACG 58.714 41.667 0.00 0.00 37.60 3.06
303 304 6.929049 TGATCAAATTGACGACATAGGGATAC 59.071 38.462 0.00 0.00 0.00 2.24
304 305 7.061566 TGATCAAATTGACGACATAGGGATA 57.938 36.000 0.00 0.00 0.00 2.59
305 306 5.928976 TGATCAAATTGACGACATAGGGAT 58.071 37.500 0.00 0.00 0.00 3.85
306 307 5.351948 TGATCAAATTGACGACATAGGGA 57.648 39.130 0.00 0.00 0.00 4.20
307 308 5.220854 GGTTGATCAAATTGACGACATAGGG 60.221 44.000 10.35 0.00 0.00 3.53
308 309 5.586243 AGGTTGATCAAATTGACGACATAGG 59.414 40.000 10.35 0.00 0.00 2.57
309 310 6.668541 AGGTTGATCAAATTGACGACATAG 57.331 37.500 10.35 0.00 0.00 2.23
310 311 7.604545 TGTTAGGTTGATCAAATTGACGACATA 59.395 33.333 10.35 2.62 0.00 2.29
311 312 6.429692 TGTTAGGTTGATCAAATTGACGACAT 59.570 34.615 10.35 3.52 0.00 3.06
312 313 5.760743 TGTTAGGTTGATCAAATTGACGACA 59.239 36.000 10.35 6.44 0.00 4.35
313 314 6.236017 TGTTAGGTTGATCAAATTGACGAC 57.764 37.500 10.35 3.01 0.00 4.34
314 315 8.554835 TTATGTTAGGTTGATCAAATTGACGA 57.445 30.769 10.35 0.00 0.00 4.20
315 316 8.450964 ACTTATGTTAGGTTGATCAAATTGACG 58.549 33.333 10.35 0.00 0.00 4.35
316 317 9.774742 GACTTATGTTAGGTTGATCAAATTGAC 57.225 33.333 10.35 8.77 0.00 3.18
317 318 9.513906 TGACTTATGTTAGGTTGATCAAATTGA 57.486 29.630 10.35 0.00 0.00 2.57
416 417 8.268052 CGTGCGACCGAAAATTAATATAAACTA 58.732 33.333 0.00 0.00 0.00 2.24
417 418 7.121272 CGTGCGACCGAAAATTAATATAAACT 58.879 34.615 0.00 0.00 0.00 2.66
418 419 6.901357 ACGTGCGACCGAAAATTAATATAAAC 59.099 34.615 0.00 0.00 0.00 2.01
419 420 7.002816 ACGTGCGACCGAAAATTAATATAAA 57.997 32.000 0.00 0.00 0.00 1.40
420 421 6.255237 TGACGTGCGACCGAAAATTAATATAA 59.745 34.615 0.00 0.00 0.00 0.98
421 422 5.747675 TGACGTGCGACCGAAAATTAATATA 59.252 36.000 0.00 0.00 0.00 0.86
422 423 4.567558 TGACGTGCGACCGAAAATTAATAT 59.432 37.500 0.00 0.00 0.00 1.28
423 424 3.925299 TGACGTGCGACCGAAAATTAATA 59.075 39.130 0.00 0.00 0.00 0.98
424 425 2.737783 TGACGTGCGACCGAAAATTAAT 59.262 40.909 0.00 0.00 0.00 1.40
425 426 2.133553 TGACGTGCGACCGAAAATTAA 58.866 42.857 0.00 0.00 0.00 1.40
426 427 1.780806 TGACGTGCGACCGAAAATTA 58.219 45.000 0.00 0.00 0.00 1.40
427 428 1.136085 CATGACGTGCGACCGAAAATT 60.136 47.619 0.00 0.00 0.00 1.82
428 429 0.442310 CATGACGTGCGACCGAAAAT 59.558 50.000 0.00 0.00 0.00 1.82
429 430 0.597898 TCATGACGTGCGACCGAAAA 60.598 50.000 0.00 0.00 0.00 2.29
430 431 0.597898 TTCATGACGTGCGACCGAAA 60.598 50.000 0.00 0.00 0.00 3.46
431 432 0.389296 ATTCATGACGTGCGACCGAA 60.389 50.000 0.00 0.00 0.00 4.30
432 433 1.075979 CATTCATGACGTGCGACCGA 61.076 55.000 0.00 0.00 0.00 4.69
433 434 1.075979 TCATTCATGACGTGCGACCG 61.076 55.000 0.00 0.00 0.00 4.79
434 435 1.061131 CTTCATTCATGACGTGCGACC 59.939 52.381 0.00 0.00 36.36 4.79
435 436 1.061131 CCTTCATTCATGACGTGCGAC 59.939 52.381 0.00 0.00 36.36 5.19
436 437 1.337728 ACCTTCATTCATGACGTGCGA 60.338 47.619 0.00 0.00 36.36 5.10
437 438 1.078709 ACCTTCATTCATGACGTGCG 58.921 50.000 0.00 0.00 36.36 5.34
450 451 5.882040 TCAATGTGGGTACAATTACCTTCA 58.118 37.500 0.00 2.02 46.56 3.02
476 477 9.374711 TCCTAATCCCACCATTTAATTAATTCC 57.625 33.333 3.39 0.00 0.00 3.01
478 479 9.722317 TGTCCTAATCCCACCATTTAATTAATT 57.278 29.630 5.89 5.89 0.00 1.40
479 480 9.367160 CTGTCCTAATCCCACCATTTAATTAAT 57.633 33.333 0.00 0.00 0.00 1.40
480 481 7.782644 CCTGTCCTAATCCCACCATTTAATTAA 59.217 37.037 0.00 0.00 0.00 1.40
481 482 7.294584 CCTGTCCTAATCCCACCATTTAATTA 58.705 38.462 0.00 0.00 0.00 1.40
483 484 5.705400 CCTGTCCTAATCCCACCATTTAAT 58.295 41.667 0.00 0.00 0.00 1.40
485 486 3.117663 GCCTGTCCTAATCCCACCATTTA 60.118 47.826 0.00 0.00 0.00 1.40
487 488 1.215423 GCCTGTCCTAATCCCACCATT 59.785 52.381 0.00 0.00 0.00 3.16
511 514 0.104671 GCTCTCATCTGCTCCACTCC 59.895 60.000 0.00 0.00 0.00 3.85
527 530 1.142314 CTGCTCTGCTCCTCTGCTC 59.858 63.158 0.00 0.00 0.00 4.26
528 531 1.305129 TCTGCTCTGCTCCTCTGCT 60.305 57.895 0.00 0.00 0.00 4.24
529 532 1.142314 CTCTGCTCTGCTCCTCTGC 59.858 63.158 0.00 0.00 0.00 4.26
530 533 0.457035 GACTCTGCTCTGCTCCTCTG 59.543 60.000 0.00 0.00 0.00 3.35
531 534 0.684153 GGACTCTGCTCTGCTCCTCT 60.684 60.000 0.00 0.00 0.00 3.69
532 535 1.675720 GGGACTCTGCTCTGCTCCTC 61.676 65.000 0.00 0.00 0.00 3.71
533 536 1.685421 GGGACTCTGCTCTGCTCCT 60.685 63.158 0.00 0.00 0.00 3.69
534 537 1.986757 TGGGACTCTGCTCTGCTCC 60.987 63.158 0.00 0.00 0.00 4.70
571 574 1.261238 GGAGGAGTGAGGTGAGGTGG 61.261 65.000 0.00 0.00 0.00 4.61
592 600 4.387765 AAAGGGGGAGGGGGAGGG 62.388 72.222 0.00 0.00 0.00 4.30
593 601 2.696504 GAAAGGGGGAGGGGGAGG 60.697 72.222 0.00 0.00 0.00 4.30
595 603 1.230182 GAAGAAAGGGGGAGGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
601 609 0.253207 GGAGGGAGAAGAAAGGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
602 610 0.550147 TGGAGGGAGAAGAAAGGGGG 60.550 60.000 0.00 0.00 0.00 5.40
607 618 3.117813 TCGGTTTTTGGAGGGAGAAGAAA 60.118 43.478 0.00 0.00 0.00 2.52
608 619 2.440253 TCGGTTTTTGGAGGGAGAAGAA 59.560 45.455 0.00 0.00 0.00 2.52
628 639 1.351017 TGTTTGGAGGGTGGAGATGTC 59.649 52.381 0.00 0.00 0.00 3.06
662 673 3.618780 GACTGGGACTGGGCTGCAG 62.619 68.421 10.11 10.11 0.00 4.41
663 674 3.640407 GACTGGGACTGGGCTGCA 61.640 66.667 0.50 0.00 0.00 4.41
670 681 4.087892 CTGGCGGGACTGGGACTG 62.088 72.222 0.00 0.00 0.00 3.51
671 682 3.846405 TTCTGGCGGGACTGGGACT 62.846 63.158 0.00 0.00 0.00 3.85
672 683 3.319198 TTCTGGCGGGACTGGGAC 61.319 66.667 0.00 0.00 0.00 4.46
673 684 3.319198 GTTCTGGCGGGACTGGGA 61.319 66.667 0.00 0.00 0.00 4.37
715 726 4.020617 CCAACTCTGCTGCCCGGA 62.021 66.667 0.73 0.00 0.00 5.14
755 766 4.785453 CGGGAAGGACAGGCCAGC 62.785 72.222 5.01 0.00 40.02 4.85
759 770 4.785453 CAGGCGGGAAGGACAGGC 62.785 72.222 0.00 0.00 0.00 4.85
767 778 3.561120 ATCAAACGGCAGGCGGGAA 62.561 57.895 21.86 3.38 0.00 3.97
768 779 3.969250 GATCAAACGGCAGGCGGGA 62.969 63.158 21.86 14.94 0.00 5.14
803 849 2.370647 GATCGAGCGGGGAGGAAAGG 62.371 65.000 0.00 0.00 0.00 3.11
843 889 3.154473 CGGATCTCGGGGGCAAGA 61.154 66.667 0.00 0.00 34.75 3.02
873 919 2.334653 GAGAGATCCCGCTGCTCG 59.665 66.667 0.00 0.00 33.98 5.03
891 937 1.519455 GGCCAAGACGAGGATCACG 60.519 63.158 0.00 9.40 33.17 4.35
924 973 3.632604 GGAAAAGGAAATCCCGGATCTTC 59.367 47.826 0.73 7.01 40.87 2.87
946 995 4.084888 GCTGGCGAAACCGAACCG 62.085 66.667 0.00 0.00 43.94 4.44
947 996 4.084888 CGCTGGCGAAACCGAACC 62.085 66.667 9.51 0.00 43.94 3.62
948 997 3.343421 ACGCTGGCGAAACCGAAC 61.343 61.111 21.77 0.00 43.94 3.95
949 998 3.342627 CACGCTGGCGAAACCGAA 61.343 61.111 21.77 0.00 43.94 4.30
1059 1119 3.962421 CGCGGCCCGAGGTAGTAG 61.962 72.222 7.68 0.00 40.02 2.57
1494 1569 2.448705 GGAGAGCAGCGCGAAGAAC 61.449 63.158 12.10 0.00 0.00 3.01
1762 1846 2.487986 CCTTGAACTTGTTCCAGAGCCT 60.488 50.000 13.87 0.00 0.00 4.58
2199 2287 7.750903 CAGCTGAAATGCCTACTAAAAAGTAAC 59.249 37.037 8.42 0.00 0.00 2.50
2214 2302 0.316204 ACTTGGCACAGCTGAAATGC 59.684 50.000 23.35 19.70 42.39 3.56
2244 2332 2.872370 GCACAGCTGAAATGCCTAAAG 58.128 47.619 23.35 0.00 33.06 1.85
2258 2347 2.977914 TCTAATGAGACTTGGCACAGC 58.022 47.619 0.00 0.00 42.39 4.40
2267 2356 4.212143 TGCAGTGCAATCTAATGAGACT 57.788 40.909 17.26 0.00 34.76 3.24
2392 2487 6.066690 ACACAATGCTATCCTTTGATGCTAT 58.933 36.000 0.00 0.00 33.92 2.97
2393 2488 5.439721 ACACAATGCTATCCTTTGATGCTA 58.560 37.500 0.00 0.00 33.92 3.49
2394 2489 4.275810 ACACAATGCTATCCTTTGATGCT 58.724 39.130 0.00 0.00 33.92 3.79
2406 2501 5.003160 AGTATTCACTGCAACACAATGCTA 58.997 37.500 0.67 0.00 46.54 3.49
2409 2504 6.486253 ACTAGTATTCACTGCAACACAATG 57.514 37.500 0.00 0.00 36.14 2.82
2478 2573 3.299977 CTGACACCCGACACCCGA 61.300 66.667 0.00 0.00 41.76 5.14
2479 2574 3.159858 AACTGACACCCGACACCCG 62.160 63.158 0.00 0.00 38.18 5.28
2480 2575 1.597027 CAACTGACACCCGACACCC 60.597 63.158 0.00 0.00 0.00 4.61
2481 2576 1.597027 CCAACTGACACCCGACACC 60.597 63.158 0.00 0.00 0.00 4.16
2482 2577 1.145377 ACCAACTGACACCCGACAC 59.855 57.895 0.00 0.00 0.00 3.67
2483 2578 1.145156 CACCAACTGACACCCGACA 59.855 57.895 0.00 0.00 0.00 4.35
2484 2579 0.179067 TTCACCAACTGACACCCGAC 60.179 55.000 0.00 0.00 0.00 4.79
2494 2589 3.139077 GTGAGATTTCCGTTCACCAACT 58.861 45.455 0.00 0.00 36.17 3.16
2504 2599 5.869753 AGAGAATTGTTGTGAGATTTCCG 57.130 39.130 0.00 0.00 0.00 4.30
2517 2612 6.899393 TGCAAGGACAAAATAGAGAATTGT 57.101 33.333 0.00 0.00 39.82 2.71
2573 2668 1.686115 CCACAAAGGGGATGGATGGAC 60.686 57.143 0.00 0.00 35.33 4.02
2603 2702 1.973812 GGTGCTGGTTTGCTCCTCC 60.974 63.158 0.00 0.00 41.72 4.30
2660 2762 3.854669 AGCATCCCCTTCGCCGAG 61.855 66.667 0.00 0.00 0.00 4.63
2707 2809 2.203294 ACTTCGCCACCAACACCC 60.203 61.111 0.00 0.00 0.00 4.61
2792 2898 2.802106 GACTTCCTCTCGCTCGGG 59.198 66.667 0.00 0.00 0.00 5.14
2914 3024 7.068702 ACAATGACAACATGGGGATAACATAT 58.931 34.615 0.00 0.00 36.79 1.78
3002 3115 1.933181 GCAACTTGGGTTCAAAGCAAC 59.067 47.619 0.00 0.00 32.73 4.17
3007 3120 7.775053 AGAATATAAGCAACTTGGGTTCAAA 57.225 32.000 0.00 0.00 32.73 2.69
3008 3121 7.775053 AAGAATATAAGCAACTTGGGTTCAA 57.225 32.000 0.00 0.00 32.73 2.69
3009 3122 7.093945 GGAAAGAATATAAGCAACTTGGGTTCA 60.094 37.037 0.00 0.00 32.73 3.18
3010 3123 7.258441 GGAAAGAATATAAGCAACTTGGGTTC 58.742 38.462 0.00 0.00 32.73 3.62
3011 3124 6.127730 CGGAAAGAATATAAGCAACTTGGGTT 60.128 38.462 0.00 0.00 35.86 4.11
3012 3125 5.357032 CGGAAAGAATATAAGCAACTTGGGT 59.643 40.000 0.00 0.00 0.00 4.51
3013 3126 5.221048 CCGGAAAGAATATAAGCAACTTGGG 60.221 44.000 0.00 0.00 0.00 4.12
3014 3127 5.733373 GCCGGAAAGAATATAAGCAACTTGG 60.733 44.000 5.05 0.00 0.00 3.61
3015 3128 5.066505 AGCCGGAAAGAATATAAGCAACTTG 59.933 40.000 5.05 0.00 0.00 3.16
3016 3129 5.193679 AGCCGGAAAGAATATAAGCAACTT 58.806 37.500 5.05 0.00 0.00 2.66
3017 3130 4.781934 AGCCGGAAAGAATATAAGCAACT 58.218 39.130 5.05 0.00 0.00 3.16
3018 3131 5.500645 AAGCCGGAAAGAATATAAGCAAC 57.499 39.130 5.05 0.00 0.00 4.17
3019 3132 6.524101 AAAAGCCGGAAAGAATATAAGCAA 57.476 33.333 5.05 0.00 0.00 3.91
3020 3133 6.262273 CCTAAAAGCCGGAAAGAATATAAGCA 59.738 38.462 5.05 0.00 0.00 3.91
3021 3134 6.262496 ACCTAAAAGCCGGAAAGAATATAAGC 59.738 38.462 5.05 0.00 0.00 3.09
3022 3135 7.255139 CCACCTAAAAGCCGGAAAGAATATAAG 60.255 40.741 5.05 0.00 0.00 1.73
3023 3136 6.544564 CCACCTAAAAGCCGGAAAGAATATAA 59.455 38.462 5.05 0.00 0.00 0.98
3024 3137 6.059484 CCACCTAAAAGCCGGAAAGAATATA 58.941 40.000 5.05 0.00 0.00 0.86
3025 3138 4.887655 CCACCTAAAAGCCGGAAAGAATAT 59.112 41.667 5.05 0.00 0.00 1.28
3026 3139 4.266714 CCACCTAAAAGCCGGAAAGAATA 58.733 43.478 5.05 0.00 0.00 1.75
3027 3140 3.089284 CCACCTAAAAGCCGGAAAGAAT 58.911 45.455 5.05 0.00 0.00 2.40
3028 3141 2.510613 CCACCTAAAAGCCGGAAAGAA 58.489 47.619 5.05 0.00 0.00 2.52
3029 3142 1.884928 GCCACCTAAAAGCCGGAAAGA 60.885 52.381 5.05 0.00 0.00 2.52
3030 3143 0.526211 GCCACCTAAAAGCCGGAAAG 59.474 55.000 5.05 0.00 0.00 2.62
3031 3144 0.178987 TGCCACCTAAAAGCCGGAAA 60.179 50.000 5.05 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.