Multiple sequence alignment - TraesCS5A01G029300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G029300 chr5A 100.000 5401 0 0 1 5401 25090854 25096254 0.000000e+00 9974
1 TraesCS5A01G029300 chr5A 96.296 162 6 0 5060 5221 312272634 312272795 3.210000e-67 267
2 TraesCS5A01G029300 chr5A 89.552 134 11 2 4502 4634 16502662 16502793 3.350000e-37 167
3 TraesCS5A01G029300 chr5D 96.041 2905 108 4 1 2899 35999643 36002546 0.000000e+00 4721
4 TraesCS5A01G029300 chr5D 90.830 1036 75 8 3926 4945 36003109 36004140 0.000000e+00 1369
5 TraesCS5A01G029300 chr5D 95.965 347 12 2 3128 3474 36002781 36003125 3.650000e-156 562
6 TraesCS5A01G029300 chr5D 77.559 762 97 41 4183 4912 22863230 22863949 5.070000e-105 392
7 TraesCS5A01G029300 chr5D 92.571 175 11 1 5227 5401 36004279 36004451 3.230000e-62 250
8 TraesCS5A01G029300 chr5D 91.515 165 14 0 5060 5224 198955068 198954904 1.510000e-55 228
9 TraesCS5A01G029300 chr5D 74.250 400 60 23 2498 2893 35985540 35985900 1.580000e-25 128
10 TraesCS5A01G029300 chr1B 92.717 2499 145 15 339 2823 597156588 597154113 0.000000e+00 3572
11 TraesCS5A01G029300 chr1B 81.925 1870 205 55 3131 4937 597154059 597152260 0.000000e+00 1458
12 TraesCS5A01G029300 chr1B 92.391 184 11 3 5219 5401 597152084 597151903 5.370000e-65 259
13 TraesCS5A01G029300 chr1B 93.373 166 10 1 5057 5221 615123985 615124150 1.500000e-60 244
14 TraesCS5A01G029300 chr1B 92.079 101 6 2 2881 2980 28500405 28500504 2.030000e-29 141
15 TraesCS5A01G029300 chr5B 91.392 941 65 8 4020 4944 26950572 26951512 0.000000e+00 1275
16 TraesCS5A01G029300 chr5B 93.252 163 11 0 5239 5401 26951637 26951799 1.940000e-59 241
17 TraesCS5A01G029300 chr5B 88.679 159 18 0 5243 5401 26959902 26960060 1.530000e-45 195
18 TraesCS5A01G029300 chr5B 92.929 99 7 0 2887 2985 463865145 463865243 1.570000e-30 145
19 TraesCS5A01G029300 chr5B 92.157 102 7 1 2884 2984 517417378 517417479 5.640000e-30 143
20 TraesCS5A01G029300 chr7D 77.165 1305 270 23 873 2162 58826898 58825607 0.000000e+00 734
21 TraesCS5A01G029300 chr7D 76.570 1306 281 22 872 2162 58858599 58859894 0.000000e+00 693
22 TraesCS5A01G029300 chr7D 76.489 1310 265 35 872 2157 58855106 58856396 0.000000e+00 673
23 TraesCS5A01G029300 chr7A 76.542 1313 269 33 872 2162 63388252 63389547 0.000000e+00 682
24 TraesCS5A01G029300 chr7A 76.089 1309 278 29 872 2160 63362978 63361685 0.000000e+00 651
25 TraesCS5A01G029300 chr7A 79.487 585 107 11 872 1447 63391699 63392279 2.340000e-108 403
26 TraesCS5A01G029300 chr6A 96.296 162 6 0 5060 5221 522037281 522037120 3.210000e-67 267
27 TraesCS5A01G029300 chr4D 93.865 163 10 0 5059 5221 175116007 175116169 4.180000e-61 246
28 TraesCS5A01G029300 chr4D 94.624 93 4 1 2896 2987 270678633 270678541 5.640000e-30 143
29 TraesCS5A01G029300 chr2B 92.593 162 12 0 5060 5221 210654785 210654946 3.250000e-57 233
30 TraesCS5A01G029300 chr2B 86.508 126 14 3 2888 3011 49649226 49649102 9.440000e-28 135
31 TraesCS5A01G029300 chr4A 92.593 162 9 2 5060 5221 371794539 371794697 4.210000e-56 230
32 TraesCS5A01G029300 chr1A 90.588 170 15 1 5057 5225 84012383 84012552 1.960000e-54 224
33 TraesCS5A01G029300 chr3D 87.368 190 20 4 5039 5227 500129035 500128849 1.180000e-51 215
34 TraesCS5A01G029300 chr2D 95.789 95 4 0 2889 2983 534934502 534934596 2.610000e-33 154
35 TraesCS5A01G029300 chr6B 96.703 91 3 0 2896 2986 42774575 42774665 9.370000e-33 152
36 TraesCS5A01G029300 chr6D 95.699 93 4 0 2895 2987 468902041 468901949 3.370000e-32 150
37 TraesCS5A01G029300 chr3B 89.908 109 9 2 2876 2984 668836864 668836970 7.290000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G029300 chr5A 25090854 25096254 5400 False 9974.0 9974 100.00000 1 5401 1 chr5A.!!$F2 5400
1 TraesCS5A01G029300 chr5D 35999643 36004451 4808 False 1725.5 4721 93.85175 1 5401 4 chr5D.!!$F3 5400
2 TraesCS5A01G029300 chr5D 22863230 22863949 719 False 392.0 392 77.55900 4183 4912 1 chr5D.!!$F1 729
3 TraesCS5A01G029300 chr1B 597151903 597156588 4685 True 1763.0 3572 89.01100 339 5401 3 chr1B.!!$R1 5062
4 TraesCS5A01G029300 chr5B 26950572 26951799 1227 False 758.0 1275 92.32200 4020 5401 2 chr5B.!!$F4 1381
5 TraesCS5A01G029300 chr7D 58825607 58826898 1291 True 734.0 734 77.16500 873 2162 1 chr7D.!!$R1 1289
6 TraesCS5A01G029300 chr7D 58855106 58859894 4788 False 683.0 693 76.52950 872 2162 2 chr7D.!!$F1 1290
7 TraesCS5A01G029300 chr7A 63361685 63362978 1293 True 651.0 651 76.08900 872 2160 1 chr7A.!!$R1 1288
8 TraesCS5A01G029300 chr7A 63388252 63392279 4027 False 542.5 682 78.01450 872 2162 2 chr7A.!!$F1 1290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 491 0.176449 CGAGTGGCCACATCAGATCA 59.824 55.0 36.39 0.00 0.00 2.92 F
1025 1030 1.160137 GTCAGGATTCACAGTGTGGC 58.840 55.0 22.79 12.33 33.87 5.01 F
1489 1500 1.026718 CATCACGGGGAAACTGCCTC 61.027 60.0 0.00 0.00 0.00 4.70 F
2302 2322 1.531423 AAGCTGGAGTGCAGATGTTG 58.469 50.0 16.83 0.00 34.99 3.33 F
3701 5766 0.032117 TCACCGATGACTGGGGAGAT 60.032 55.0 0.00 0.00 32.78 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1456 1467 1.002257 TGATGCATGGACCGCTGTT 60.002 52.632 2.46 0.0 0.00 3.16 R
2630 2657 0.393808 GGGAAGCAGGCGACCATTTA 60.394 55.000 10.67 0.0 0.00 1.40 R
2649 2676 1.067565 TGCTAGAAGTCCAGCTCGTTG 60.068 52.381 0.00 0.0 38.63 4.10 R
4225 6296 0.251165 ACCGCCTGGCAAATGTACTT 60.251 50.000 20.29 0.0 39.70 2.24 R
5060 7241 0.042131 TATGTGGGAACGGAGGGAGT 59.958 55.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.100409 GCCTCTTAGCTAAATTATCCCTAGTG 58.900 42.308 7.74 0.00 0.00 2.74
54 55 8.338259 GTGAGCAGTTTATAATGTGATGGTAAG 58.662 37.037 0.00 0.00 0.00 2.34
68 69 5.991606 GTGATGGTAAGCACAAGAGCATATA 59.008 40.000 0.00 0.00 42.41 0.86
110 111 4.431416 TCTTCCAAGCAGTAGGAACAAA 57.569 40.909 0.00 0.00 38.91 2.83
158 161 8.270799 CAGATGTGCTTTAACAAAACTGAATTG 58.729 33.333 0.00 0.00 34.63 2.32
159 162 8.196771 AGATGTGCTTTAACAAAACTGAATTGA 58.803 29.630 4.66 0.00 32.81 2.57
204 207 3.544834 GCTATACACTGCTGAATTGTGCG 60.545 47.826 0.00 0.00 35.33 5.34
213 216 1.872952 CTGAATTGTGCGTCTTCCACA 59.127 47.619 0.00 0.00 41.11 4.17
215 218 0.951558 AATTGTGCGTCTTCCACACC 59.048 50.000 0.00 0.00 42.39 4.16
216 219 0.179032 ATTGTGCGTCTTCCACACCA 60.179 50.000 0.00 0.00 42.39 4.17
228 231 1.374947 CACACCATTCGGTCAGGGT 59.625 57.895 0.00 0.00 44.71 4.34
350 353 1.678101 GGCCTTGGAAATTCGGAGATG 59.322 52.381 0.00 0.00 35.04 2.90
397 400 4.039245 AGCAGCTAAGTAAGACACACTTCA 59.961 41.667 0.00 0.00 39.72 3.02
481 484 0.396435 TCTCAAACGAGTGGCCACAT 59.604 50.000 36.39 21.77 0.00 3.21
488 491 0.176449 CGAGTGGCCACATCAGATCA 59.824 55.000 36.39 0.00 0.00 2.92
674 677 2.174363 TGCAGACTTCTGGTGTCATG 57.826 50.000 8.32 0.00 43.94 3.07
777 780 4.566545 TTTGAGCAATCAAACGTCACAT 57.433 36.364 0.00 0.00 35.01 3.21
811 814 2.361757 TGTCAAAAATGGTGACCTGCAG 59.638 45.455 6.78 6.78 43.95 4.41
829 832 1.449601 GGCACCACTACATGACCCG 60.450 63.158 0.00 0.00 0.00 5.28
836 839 2.432874 CCACTACATGACCCGTCCATAA 59.567 50.000 0.00 0.00 0.00 1.90
842 845 5.323371 ACATGACCCGTCCATAAAATTTG 57.677 39.130 0.00 0.00 0.00 2.32
999 1004 1.933247 AGCTGCAGAAGATAAGTCGC 58.067 50.000 20.43 0.00 0.00 5.19
1025 1030 1.160137 GTCAGGATTCACAGTGTGGC 58.840 55.000 22.79 12.33 33.87 5.01
1053 1058 1.308069 CCAAAGGGAGGCACATCACG 61.308 60.000 0.00 0.00 35.59 4.35
1456 1467 4.456911 GGATCATCAACTTCTTGCTTGACA 59.543 41.667 0.00 0.00 0.00 3.58
1489 1500 1.026718 CATCACGGGGAAACTGCCTC 61.027 60.000 0.00 0.00 0.00 4.70
1494 1505 1.676967 GGGGAAACTGCCTCTGCTG 60.677 63.158 0.00 0.00 41.75 4.41
1659 1670 6.638610 TGTTGTTCTGAAATCCAAACATGTT 58.361 32.000 4.92 4.92 32.16 2.71
1832 1849 3.118261 GGGAGCAAGATCATACTCACCAA 60.118 47.826 10.04 0.00 0.00 3.67
2016 2036 7.632245 GCAAGGAAGCTAAATGGATCATTCTTT 60.632 37.037 0.00 0.00 32.43 2.52
2082 2102 3.982516 ACAGCTCTGGTGTAAGATCCTA 58.017 45.455 0.27 0.00 42.67 2.94
2302 2322 1.531423 AAGCTGGAGTGCAGATGTTG 58.469 50.000 16.83 0.00 34.99 3.33
2455 2475 1.989706 TGGGGAACTAAACCTTGTGC 58.010 50.000 0.00 0.00 0.00 4.57
2458 2478 2.492088 GGGGAACTAAACCTTGTGCATC 59.508 50.000 0.00 0.00 0.00 3.91
2489 2509 4.771590 TGTGCTGATCAATGTTTCCTTC 57.228 40.909 0.00 0.00 0.00 3.46
2630 2657 5.687166 TGTTCCAAATAGTCCTTCGGTAT 57.313 39.130 0.00 0.00 0.00 2.73
2649 2676 0.393808 TAAATGGTCGCCTGCTTCCC 60.394 55.000 0.00 0.00 0.00 3.97
2665 2692 0.832135 TCCCAACGAGCTGGACTTCT 60.832 55.000 1.44 0.00 38.96 2.85
2818 3449 0.729116 CTCAACTATGCGCCAACTGG 59.271 55.000 4.18 0.00 38.53 4.00
2865 3496 2.101783 TCCAATGATCTTTGCGCCAAT 58.898 42.857 14.34 0.00 0.00 3.16
2868 3499 2.855963 CAATGATCTTTGCGCCAATGAC 59.144 45.455 4.18 3.79 31.99 3.06
2878 3509 0.804989 CGCCAATGACTGACCCTTTC 59.195 55.000 0.00 0.00 0.00 2.62
2901 4026 5.964477 TCCAATCACTTTACCATCTACTCCT 59.036 40.000 0.00 0.00 0.00 3.69
2903 4028 6.763610 CCAATCACTTTACCATCTACTCCTTC 59.236 42.308 0.00 0.00 0.00 3.46
2905 4030 8.696374 CAATCACTTTACCATCTACTCCTTCTA 58.304 37.037 0.00 0.00 0.00 2.10
3004 4129 2.125350 CCTGCGGCAGTTCTCCTC 60.125 66.667 26.79 0.00 0.00 3.71
3017 4142 3.328931 AGTTCTCCTCAAAATCTGCCTCA 59.671 43.478 0.00 0.00 0.00 3.86
3030 4155 2.558286 GCCTCAGCAAGTGCAAGCA 61.558 57.895 6.00 0.00 45.16 3.91
3039 4164 1.136695 CAAGTGCAAGCACCTTGGAAA 59.863 47.619 20.55 0.00 42.90 3.13
3079 4209 5.998363 GGTAAGAACCTCAACTTGATTGTCT 59.002 40.000 0.00 0.00 43.08 3.41
3082 4212 3.213206 ACCTCAACTTGATTGTCTGCA 57.787 42.857 0.00 0.00 39.54 4.41
3095 4803 7.230849 TGATTGTCTGCACTAATCCAATTTT 57.769 32.000 9.21 0.00 31.47 1.82
3123 4831 0.958822 GGTTACTGTGTTGCCTTGGG 59.041 55.000 0.00 0.00 0.00 4.12
3124 4832 1.687563 GTTACTGTGTTGCCTTGGGT 58.312 50.000 0.00 0.00 0.00 4.51
3125 4833 1.336755 GTTACTGTGTTGCCTTGGGTG 59.663 52.381 0.00 0.00 0.00 4.61
3126 4834 0.821711 TACTGTGTTGCCTTGGGTGC 60.822 55.000 0.00 0.00 0.00 5.01
3203 5113 5.765182 AGTGGTTTCTGTACAGGAGAAATTG 59.235 40.000 22.48 0.00 40.60 2.32
3268 5178 4.202245 TCTGCATAACTGTTGGTACTCC 57.798 45.455 2.69 0.00 0.00 3.85
3340 5251 5.682234 TGTTGATCTCTTCAAGGCTATGA 57.318 39.130 0.00 0.00 44.89 2.15
3428 5372 7.555554 AGAGGACAATAAGAAAAGATGGTGATG 59.444 37.037 0.00 0.00 0.00 3.07
3432 5376 8.503458 ACAATAAGAAAAGATGGTGATGAGAG 57.497 34.615 0.00 0.00 0.00 3.20
3441 5385 2.191128 GGTGATGAGAGTGCACCTTT 57.809 50.000 14.63 0.00 46.56 3.11
3450 5394 6.072112 TGAGAGTGCACCTTTTTATTGTTC 57.928 37.500 14.63 0.00 0.00 3.18
3451 5395 5.592282 TGAGAGTGCACCTTTTTATTGTTCA 59.408 36.000 14.63 0.00 0.00 3.18
3479 5423 5.071384 TGTCATCATGAGCATCTATGGACTT 59.929 40.000 0.09 0.00 34.92 3.01
3486 5430 5.363101 TGAGCATCTATGGACTTGATTGAC 58.637 41.667 0.00 0.00 34.92 3.18
3492 5436 7.446625 GCATCTATGGACTTGATTGACCTATTT 59.553 37.037 0.00 0.00 0.00 1.40
3532 5570 0.102481 ACGACCATGGTACGATCTGC 59.898 55.000 30.54 13.06 0.00 4.26
3549 5587 0.682532 TGCGGATGAGCTCTGAGAGT 60.683 55.000 16.19 0.00 38.13 3.24
3562 5600 1.967066 CTGAGAGTCACTCCAAGGTGT 59.033 52.381 0.00 0.00 44.34 4.16
3600 5638 1.304464 CCCTTTGGGCTCTTCCACC 60.304 63.158 0.00 0.00 35.35 4.61
3602 5640 1.073199 CTTTGGGCTCTTCCACCGT 59.927 57.895 0.00 0.00 36.38 4.83
3607 5645 0.108281 GGGCTCTTCCACCGTACTTC 60.108 60.000 0.00 0.00 36.21 3.01
3620 5658 5.103000 CACCGTACTTCCAGTCTTGATTAG 58.897 45.833 0.00 0.00 0.00 1.73
3627 5665 7.129457 ACTTCCAGTCTTGATTAGCATATGA 57.871 36.000 6.97 0.00 0.00 2.15
3628 5666 6.989169 ACTTCCAGTCTTGATTAGCATATGAC 59.011 38.462 6.97 0.00 0.00 3.06
3630 5668 5.301805 TCCAGTCTTGATTAGCATATGACGA 59.698 40.000 6.97 0.00 31.42 4.20
3632 5670 6.479990 CCAGTCTTGATTAGCATATGACGAAA 59.520 38.462 6.97 0.00 31.42 3.46
3636 5674 8.006590 GTCTTGATTAGCATATGACGAAACATC 58.993 37.037 6.97 0.00 0.00 3.06
3663 5701 2.281484 GCTTGGGTGCCTGACGAA 60.281 61.111 0.00 0.00 0.00 3.85
3664 5702 1.896660 GCTTGGGTGCCTGACGAAA 60.897 57.895 0.00 0.00 0.00 3.46
3666 5704 0.817634 CTTGGGTGCCTGACGAAACA 60.818 55.000 0.00 0.00 0.00 2.83
3667 5705 0.179004 TTGGGTGCCTGACGAAACAT 60.179 50.000 0.00 0.00 0.00 2.71
3668 5706 0.605319 TGGGTGCCTGACGAAACATC 60.605 55.000 0.00 0.00 0.00 3.06
3669 5707 0.321653 GGGTGCCTGACGAAACATCT 60.322 55.000 0.00 0.00 0.00 2.90
3670 5708 1.079503 GGTGCCTGACGAAACATCTC 58.920 55.000 0.00 0.00 0.00 2.75
3672 5710 1.728971 GTGCCTGACGAAACATCTCTG 59.271 52.381 0.00 0.00 0.00 3.35
3673 5711 0.723981 GCCTGACGAAACATCTCTGC 59.276 55.000 0.00 0.00 0.00 4.26
3674 5712 1.674221 GCCTGACGAAACATCTCTGCT 60.674 52.381 0.00 0.00 0.00 4.24
3675 5713 2.417379 GCCTGACGAAACATCTCTGCTA 60.417 50.000 0.00 0.00 0.00 3.49
3676 5714 3.849911 CCTGACGAAACATCTCTGCTAA 58.150 45.455 0.00 0.00 0.00 3.09
3677 5715 4.437239 CCTGACGAAACATCTCTGCTAAT 58.563 43.478 0.00 0.00 0.00 1.73
3678 5716 4.505922 CCTGACGAAACATCTCTGCTAATC 59.494 45.833 0.00 0.00 0.00 1.75
3701 5766 0.032117 TCACCGATGACTGGGGAGAT 60.032 55.000 0.00 0.00 32.78 2.75
3708 5773 3.243569 CGATGACTGGGGAGATAACAGAC 60.244 52.174 0.00 0.00 36.17 3.51
3726 5793 4.588528 ACAGACACAGCCATGGTAAAAATT 59.411 37.500 14.67 0.00 0.00 1.82
3731 5798 4.931002 CACAGCCATGGTAAAAATTTCCAG 59.069 41.667 14.67 0.00 34.62 3.86
3753 5820 6.873076 CCAGATGGAAGATCTAATTCTAGTGC 59.127 42.308 0.00 0.00 37.39 4.40
3755 5822 8.095792 CAGATGGAAGATCTAATTCTAGTGCAT 58.904 37.037 0.00 0.00 0.00 3.96
3756 5823 8.095792 AGATGGAAGATCTAATTCTAGTGCATG 58.904 37.037 0.00 0.00 0.00 4.06
3827 5894 7.424803 TGTTCAGTGTTCACCATTTTAATGAG 58.575 34.615 4.07 0.00 38.70 2.90
3828 5895 7.284261 TGTTCAGTGTTCACCATTTTAATGAGA 59.716 33.333 4.07 0.00 38.70 3.27
3835 5902 8.739039 TGTTCACCATTTTAATGAGATTAGGTG 58.261 33.333 4.07 0.00 38.07 4.00
3839 5906 7.975616 CACCATTTTAATGAGATTAGGTGTTGG 59.024 37.037 4.07 0.00 38.70 3.77
3857 5924 5.048713 GTGTTGGTTGAAATAAGAGGTCAGG 60.049 44.000 0.00 0.00 0.00 3.86
3863 5930 5.165961 TGAAATAAGAGGTCAGGTGAAGG 57.834 43.478 0.00 0.00 0.00 3.46
3873 5940 2.103263 GTCAGGTGAAGGACAAGTCAGT 59.897 50.000 2.29 0.00 34.22 3.41
3884 5951 1.967066 ACAAGTCAGTGAGAGGACAGG 59.033 52.381 0.00 0.00 36.50 4.00
3889 5956 2.955660 GTCAGTGAGAGGACAGGGATAG 59.044 54.545 0.00 0.00 34.22 2.08
3900 5967 1.484240 ACAGGGATAGCAGAGAGTTGC 59.516 52.381 0.00 0.00 44.41 4.17
3901 5968 1.127343 AGGGATAGCAGAGAGTTGCC 58.873 55.000 0.00 0.00 45.18 4.52
3907 5974 2.977772 AGCAGAGAGTTGCCTGATAC 57.022 50.000 0.00 0.00 45.18 2.24
3921 5988 8.361139 AGTTGCCTGATACTCTACATATAACAC 58.639 37.037 0.00 0.00 0.00 3.32
3931 5998 8.657387 ACTCTACATATAACACATATCAGCCT 57.343 34.615 0.00 0.00 0.00 4.58
3934 6001 8.743714 TCTACATATAACACATATCAGCCTGAG 58.256 37.037 0.00 0.00 0.00 3.35
3940 6007 6.791867 AACACATATCAGCCTGAGTAACTA 57.208 37.500 0.00 0.00 0.00 2.24
4198 6269 5.290493 TCTTAAGTCTTTGTCTTCAGCCA 57.710 39.130 1.63 0.00 0.00 4.75
4225 6296 7.676004 TGGTAGTCAGACTTATTCATGTTCAA 58.324 34.615 8.80 0.00 0.00 2.69
4271 6342 4.807304 GCTGTTTTGGGATGCATAAATCAG 59.193 41.667 18.76 18.76 35.65 2.90
4651 6737 7.121168 ACAATCACAAGAACTTCAGAAGTGAAA 59.879 33.333 16.85 0.00 42.27 2.69
4678 6764 6.823689 ACGATATTCCAACAGCTCAACTTATT 59.176 34.615 0.00 0.00 0.00 1.40
4686 6772 3.997021 ACAGCTCAACTTATTCGTCAAGG 59.003 43.478 0.00 0.00 0.00 3.61
4690 6776 4.213482 GCTCAACTTATTCGTCAAGGTTGT 59.787 41.667 0.00 0.00 0.00 3.32
4719 6807 5.916883 GTCATCCATGCAATTCGGAATAAAG 59.083 40.000 3.22 0.00 31.18 1.85
4721 6809 5.756195 TCCATGCAATTCGGAATAAAGAG 57.244 39.130 3.22 0.00 0.00 2.85
4727 6815 6.611381 TGCAATTCGGAATAAAGAGAACAAG 58.389 36.000 3.22 0.00 0.00 3.16
4837 6933 6.183360 GGAATTTGCCACGTAAACAATGATTC 60.183 38.462 0.00 1.11 0.00 2.52
4864 6966 2.234908 GTTCAGTGGCATCTCTACCTGT 59.765 50.000 0.00 0.00 0.00 4.00
4871 6973 2.695666 GGCATCTCTACCTGTTGCTAGA 59.304 50.000 0.00 0.00 33.86 2.43
4887 6993 3.641436 TGCTAGAAGAGTGGAGTTTGTGA 59.359 43.478 0.00 0.00 0.00 3.58
4891 6998 5.559148 AGAAGAGTGGAGTTTGTGAGAAT 57.441 39.130 0.00 0.00 0.00 2.40
4954 7100 9.487790 GCTCATTTCTCTGTAATAATAAGCTCT 57.512 33.333 0.00 0.00 0.00 4.09
4956 7102 9.265901 TCATTTCTCTGTAATAATAAGCTCTGC 57.734 33.333 0.00 0.00 0.00 4.26
4957 7103 9.270640 CATTTCTCTGTAATAATAAGCTCTGCT 57.729 33.333 0.00 0.00 42.56 4.24
4971 7117 9.784531 AATAAGCTCTGCTAAATTATGCTTAGA 57.215 29.630 0.00 0.33 42.27 2.10
4990 7152 0.849094 AGTAGTTGGGCCATGGGGAA 60.849 55.000 15.13 0.00 35.59 3.97
4991 7153 0.040499 GTAGTTGGGCCATGGGGAAA 59.960 55.000 15.13 0.00 35.59 3.13
5010 7191 5.067805 GGGAAATACAAGAACACATCCCATC 59.932 44.000 2.70 0.00 43.83 3.51
5011 7192 5.067805 GGAAATACAAGAACACATCCCATCC 59.932 44.000 0.00 0.00 0.00 3.51
5012 7193 2.514458 ACAAGAACACATCCCATCCC 57.486 50.000 0.00 0.00 0.00 3.85
5014 7195 2.312741 ACAAGAACACATCCCATCCCAT 59.687 45.455 0.00 0.00 0.00 4.00
5015 7196 2.691526 CAAGAACACATCCCATCCCATG 59.308 50.000 0.00 0.00 0.00 3.66
5016 7197 1.925255 AGAACACATCCCATCCCATGT 59.075 47.619 0.00 0.00 33.29 3.21
5019 7200 4.017591 AGAACACATCCCATCCCATGTAAA 60.018 41.667 0.00 0.00 31.78 2.01
5020 7201 4.541250 ACACATCCCATCCCATGTAAAT 57.459 40.909 0.00 0.00 31.78 1.40
5021 7202 4.882559 ACACATCCCATCCCATGTAAATT 58.117 39.130 0.00 0.00 31.78 1.82
5022 7203 4.650588 ACACATCCCATCCCATGTAAATTG 59.349 41.667 0.00 0.00 31.78 2.32
5023 7204 4.894705 CACATCCCATCCCATGTAAATTGA 59.105 41.667 0.00 0.00 31.78 2.57
5024 7205 5.541101 CACATCCCATCCCATGTAAATTGAT 59.459 40.000 0.00 0.00 31.78 2.57
5025 7206 5.776716 ACATCCCATCCCATGTAAATTGATC 59.223 40.000 0.00 0.00 31.20 2.92
5026 7207 4.397420 TCCCATCCCATGTAAATTGATCG 58.603 43.478 0.00 0.00 0.00 3.69
5029 7210 4.083110 CCATCCCATGTAAATTGATCGAGC 60.083 45.833 0.00 0.00 0.00 5.03
5032 7213 4.946772 TCCCATGTAAATTGATCGAGCAAA 59.053 37.500 21.22 3.42 0.00 3.68
5033 7214 5.066375 TCCCATGTAAATTGATCGAGCAAAG 59.934 40.000 21.22 4.66 0.00 2.77
5035 7216 4.963276 TGTAAATTGATCGAGCAAAGGG 57.037 40.909 21.22 0.00 0.00 3.95
5037 7218 4.394920 TGTAAATTGATCGAGCAAAGGGTC 59.605 41.667 21.22 10.43 38.17 4.46
5044 7225 4.625800 AGCAAAGGGTCGATGCTC 57.374 55.556 4.65 0.00 46.98 4.26
5047 7228 1.970917 GCAAAGGGTCGATGCTCACG 61.971 60.000 0.73 0.00 37.12 4.35
5048 7229 1.741770 AAAGGGTCGATGCTCACGC 60.742 57.895 0.00 0.00 0.00 5.34
5049 7230 3.665675 AAGGGTCGATGCTCACGCC 62.666 63.158 0.00 0.00 34.43 5.68
5050 7231 4.451150 GGGTCGATGCTCACGCCA 62.451 66.667 0.00 0.00 34.43 5.69
5052 7233 2.740714 GGTCGATGCTCACGCCAAC 61.741 63.158 0.00 0.00 34.43 3.77
5053 7234 2.027073 GTCGATGCTCACGCCAACA 61.027 57.895 0.00 0.00 34.43 3.33
5054 7235 1.079197 TCGATGCTCACGCCAACAT 60.079 52.632 0.00 0.00 34.43 2.71
5055 7236 1.061411 CGATGCTCACGCCAACATG 59.939 57.895 0.00 0.00 34.43 3.21
5056 7237 1.638388 CGATGCTCACGCCAACATGT 61.638 55.000 0.00 0.00 34.43 3.21
5057 7238 1.368641 GATGCTCACGCCAACATGTA 58.631 50.000 0.00 0.00 34.43 2.29
5058 7239 1.062587 GATGCTCACGCCAACATGTAC 59.937 52.381 0.00 0.00 34.43 2.90
5060 7241 1.273886 TGCTCACGCCAACATGTACTA 59.726 47.619 0.00 0.00 34.43 1.82
5061 7242 1.659098 GCTCACGCCAACATGTACTAC 59.341 52.381 0.00 0.00 0.00 2.73
5063 7244 3.179830 CTCACGCCAACATGTACTACTC 58.820 50.000 0.00 0.00 0.00 2.59
5064 7245 2.094390 TCACGCCAACATGTACTACTCC 60.094 50.000 0.00 0.00 0.00 3.85
5066 7247 1.480954 CGCCAACATGTACTACTCCCT 59.519 52.381 0.00 0.00 0.00 4.20
5067 7248 2.481449 CGCCAACATGTACTACTCCCTC 60.481 54.545 0.00 0.00 0.00 4.30
5068 7249 2.158943 GCCAACATGTACTACTCCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
5069 7250 2.100916 CCAACATGTACTACTCCCTCCG 59.899 54.545 0.00 0.00 0.00 4.63
5070 7251 2.758979 CAACATGTACTACTCCCTCCGT 59.241 50.000 0.00 0.00 0.00 4.69
5071 7252 3.097342 ACATGTACTACTCCCTCCGTT 57.903 47.619 0.00 0.00 0.00 4.44
5072 7253 3.022406 ACATGTACTACTCCCTCCGTTC 58.978 50.000 0.00 0.00 0.00 3.95
5073 7254 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
5074 7255 1.341383 TGTACTACTCCCTCCGTTCCC 60.341 57.143 0.00 0.00 0.00 3.97
5075 7256 1.002069 TACTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
5076 7257 0.614134 ACTACTCCCTCCGTTCCCAC 60.614 60.000 0.00 0.00 0.00 4.61
5077 7258 0.613853 CTACTCCCTCCGTTCCCACA 60.614 60.000 0.00 0.00 0.00 4.17
5078 7259 0.042131 TACTCCCTCCGTTCCCACAT 59.958 55.000 0.00 0.00 0.00 3.21
5079 7260 0.042131 ACTCCCTCCGTTCCCACATA 59.958 55.000 0.00 0.00 0.00 2.29
5080 7261 1.344087 ACTCCCTCCGTTCCCACATAT 60.344 52.381 0.00 0.00 0.00 1.78
5081 7262 2.090943 ACTCCCTCCGTTCCCACATATA 60.091 50.000 0.00 0.00 0.00 0.86
5082 7263 2.969950 CTCCCTCCGTTCCCACATATAA 59.030 50.000 0.00 0.00 0.00 0.98
5083 7264 2.969950 TCCCTCCGTTCCCACATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
5084 7265 2.969950 CCCTCCGTTCCCACATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
5085 7266 3.244112 CCCTCCGTTCCCACATATAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
5086 7267 3.244112 CCTCCGTTCCCACATATAAGACC 60.244 52.174 0.00 0.00 0.00 3.85
5087 7268 3.641906 CTCCGTTCCCACATATAAGACCT 59.358 47.826 0.00 0.00 0.00 3.85
5088 7269 4.035112 TCCGTTCCCACATATAAGACCTT 58.965 43.478 0.00 0.00 0.00 3.50
5089 7270 4.472108 TCCGTTCCCACATATAAGACCTTT 59.528 41.667 0.00 0.00 0.00 3.11
5090 7271 5.045432 TCCGTTCCCACATATAAGACCTTTT 60.045 40.000 0.00 0.00 0.00 2.27
5091 7272 6.156602 TCCGTTCCCACATATAAGACCTTTTA 59.843 38.462 0.00 0.00 0.00 1.52
5092 7273 6.482308 CCGTTCCCACATATAAGACCTTTTAG 59.518 42.308 0.00 0.00 0.00 1.85
5093 7274 7.270047 CGTTCCCACATATAAGACCTTTTAGA 58.730 38.462 0.00 0.00 0.00 2.10
5094 7275 7.438459 CGTTCCCACATATAAGACCTTTTAGAG 59.562 40.741 0.00 0.00 0.00 2.43
5095 7276 8.483758 GTTCCCACATATAAGACCTTTTAGAGA 58.516 37.037 0.00 0.00 0.00 3.10
5096 7277 8.798975 TCCCACATATAAGACCTTTTAGAGAT 57.201 34.615 0.00 0.00 0.00 2.75
5097 7278 9.225682 TCCCACATATAAGACCTTTTAGAGATT 57.774 33.333 0.00 0.00 0.00 2.40
5098 7279 9.495572 CCCACATATAAGACCTTTTAGAGATTC 57.504 37.037 0.00 0.00 0.00 2.52
5099 7280 9.495572 CCACATATAAGACCTTTTAGAGATTCC 57.504 37.037 0.00 0.00 0.00 3.01
5108 7289 9.620259 AGACCTTTTAGAGATTCCATTATGAAC 57.380 33.333 0.00 0.00 0.00 3.18
5109 7290 9.620259 GACCTTTTAGAGATTCCATTATGAACT 57.380 33.333 0.00 0.00 0.00 3.01
5160 7341 6.690194 AGAGTGTAGATTCATCCATTTTGC 57.310 37.500 0.00 0.00 0.00 3.68
5161 7342 6.421485 AGAGTGTAGATTCATCCATTTTGCT 58.579 36.000 0.00 0.00 0.00 3.91
5162 7343 6.541641 AGAGTGTAGATTCATCCATTTTGCTC 59.458 38.462 0.00 0.00 0.00 4.26
5163 7344 5.591877 AGTGTAGATTCATCCATTTTGCTCC 59.408 40.000 0.00 0.00 0.00 4.70
5164 7345 4.576053 TGTAGATTCATCCATTTTGCTCCG 59.424 41.667 0.00 0.00 0.00 4.63
5165 7346 3.624777 AGATTCATCCATTTTGCTCCGT 58.375 40.909 0.00 0.00 0.00 4.69
5166 7347 4.780815 AGATTCATCCATTTTGCTCCGTA 58.219 39.130 0.00 0.00 0.00 4.02
5167 7348 5.380043 AGATTCATCCATTTTGCTCCGTAT 58.620 37.500 0.00 0.00 0.00 3.06
5168 7349 4.898829 TTCATCCATTTTGCTCCGTATG 57.101 40.909 0.00 0.00 0.00 2.39
5169 7350 3.884895 TCATCCATTTTGCTCCGTATGT 58.115 40.909 0.00 0.00 0.00 2.29
5170 7351 5.029807 TCATCCATTTTGCTCCGTATGTA 57.970 39.130 0.00 0.00 0.00 2.29
5171 7352 5.056480 TCATCCATTTTGCTCCGTATGTAG 58.944 41.667 0.00 0.00 0.00 2.74
5172 7353 4.481368 TCCATTTTGCTCCGTATGTAGT 57.519 40.909 0.00 0.00 0.00 2.73
5173 7354 4.439057 TCCATTTTGCTCCGTATGTAGTC 58.561 43.478 0.00 0.00 0.00 2.59
5174 7355 3.560068 CCATTTTGCTCCGTATGTAGTCC 59.440 47.826 0.00 0.00 0.00 3.85
5175 7356 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
5176 7357 1.466856 TTGCTCCGTATGTAGTCCGT 58.533 50.000 0.00 0.00 0.00 4.69
5177 7358 2.330440 TGCTCCGTATGTAGTCCGTA 57.670 50.000 0.00 0.00 0.00 4.02
5178 7359 2.216046 TGCTCCGTATGTAGTCCGTAG 58.784 52.381 0.00 0.00 0.00 3.51
5179 7360 2.216898 GCTCCGTATGTAGTCCGTAGT 58.783 52.381 0.00 0.00 0.00 2.73
5180 7361 2.032204 GCTCCGTATGTAGTCCGTAGTG 60.032 54.545 0.00 0.00 0.00 2.74
5181 7362 3.461061 CTCCGTATGTAGTCCGTAGTGA 58.539 50.000 0.00 0.00 0.00 3.41
5182 7363 3.872696 TCCGTATGTAGTCCGTAGTGAA 58.127 45.455 0.00 0.00 0.00 3.18
5183 7364 4.260985 TCCGTATGTAGTCCGTAGTGAAA 58.739 43.478 0.00 0.00 0.00 2.69
5184 7365 4.883585 TCCGTATGTAGTCCGTAGTGAAAT 59.116 41.667 0.00 0.00 0.00 2.17
5185 7366 5.008019 TCCGTATGTAGTCCGTAGTGAAATC 59.992 44.000 0.00 0.00 0.00 2.17
5186 7367 5.008415 CCGTATGTAGTCCGTAGTGAAATCT 59.992 44.000 0.00 0.00 0.00 2.40
5187 7368 6.134730 CGTATGTAGTCCGTAGTGAAATCTC 58.865 44.000 0.00 0.00 0.00 2.75
5188 7369 6.018098 CGTATGTAGTCCGTAGTGAAATCTCT 60.018 42.308 0.00 0.00 0.00 3.10
5189 7370 7.170489 CGTATGTAGTCCGTAGTGAAATCTCTA 59.830 40.741 0.00 0.00 0.00 2.43
5190 7371 7.876936 ATGTAGTCCGTAGTGAAATCTCTAA 57.123 36.000 0.00 0.00 0.00 2.10
5191 7372 7.692460 TGTAGTCCGTAGTGAAATCTCTAAA 57.308 36.000 0.00 0.00 0.00 1.85
5192 7373 8.114331 TGTAGTCCGTAGTGAAATCTCTAAAA 57.886 34.615 0.00 0.00 0.00 1.52
5193 7374 8.242053 TGTAGTCCGTAGTGAAATCTCTAAAAG 58.758 37.037 0.00 0.00 0.00 2.27
5194 7375 6.631962 AGTCCGTAGTGAAATCTCTAAAAGG 58.368 40.000 0.00 0.68 0.00 3.11
5195 7376 6.210984 AGTCCGTAGTGAAATCTCTAAAAGGT 59.789 38.462 0.00 0.00 0.00 3.50
5196 7377 6.530887 GTCCGTAGTGAAATCTCTAAAAGGTC 59.469 42.308 0.00 0.00 0.00 3.85
5197 7378 6.436532 TCCGTAGTGAAATCTCTAAAAGGTCT 59.563 38.462 0.00 0.00 0.00 3.85
5198 7379 7.039223 TCCGTAGTGAAATCTCTAAAAGGTCTT 60.039 37.037 0.00 0.00 0.00 3.01
5199 7380 8.248945 CCGTAGTGAAATCTCTAAAAGGTCTTA 58.751 37.037 0.00 0.00 0.00 2.10
5200 7381 9.804758 CGTAGTGAAATCTCTAAAAGGTCTTAT 57.195 33.333 0.00 0.00 0.00 1.73
5215 7396 9.907229 AAAAGGTCTTATATTTAGGAACAGAGG 57.093 33.333 0.00 0.00 0.00 3.69
5216 7397 7.619512 AGGTCTTATATTTAGGAACAGAGGG 57.380 40.000 0.00 0.00 0.00 4.30
5217 7398 7.371043 AGGTCTTATATTTAGGAACAGAGGGA 58.629 38.462 0.00 0.00 0.00 4.20
5218 7399 7.511028 AGGTCTTATATTTAGGAACAGAGGGAG 59.489 40.741 0.00 0.00 0.00 4.30
5219 7400 7.290481 GGTCTTATATTTAGGAACAGAGGGAGT 59.710 40.741 0.00 0.00 0.00 3.85
5220 7401 9.364653 GTCTTATATTTAGGAACAGAGGGAGTA 57.635 37.037 0.00 0.00 0.00 2.59
5221 7402 9.589461 TCTTATATTTAGGAACAGAGGGAGTAG 57.411 37.037 0.00 0.00 0.00 2.57
5222 7403 9.369672 CTTATATTTAGGAACAGAGGGAGTAGT 57.630 37.037 0.00 0.00 0.00 2.73
5223 7404 9.725206 TTATATTTAGGAACAGAGGGAGTAGTT 57.275 33.333 0.00 0.00 0.00 2.24
5225 7406 6.847421 TTTAGGAACAGAGGGAGTAGTTAC 57.153 41.667 0.00 0.00 0.00 2.50
5226 7407 4.678538 AGGAACAGAGGGAGTAGTTACT 57.321 45.455 0.00 0.00 39.71 2.24
5227 7408 5.013258 AGGAACAGAGGGAGTAGTTACTT 57.987 43.478 0.00 0.00 36.50 2.24
5233 7414 8.431910 AACAGAGGGAGTAGTTACTTATTTCA 57.568 34.615 0.00 0.00 36.50 2.69
5255 7436 2.021457 ACCCAATTAAATTCGGCGAGG 58.979 47.619 10.46 7.11 0.00 4.63
5259 7440 3.243068 CCAATTAAATTCGGCGAGGAAGG 60.243 47.826 10.46 1.95 0.00 3.46
5335 7517 4.278513 CCTGGTTTGTGCCCCGGA 62.279 66.667 0.73 0.00 0.00 5.14
5378 7560 2.665185 AAGTCAACCAGCGACGCC 60.665 61.111 17.79 0.00 38.46 5.68
5381 7563 4.595538 TCAACCAGCGACGCCGTT 62.596 61.111 17.79 16.18 38.24 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.012327 TGCTTACCATCACATTATAAACTGCTC 59.988 37.037 0.00 0.00 0.00 4.26
54 55 4.256920 CTGGGGTATATATGCTCTTGTGC 58.743 47.826 0.40 0.00 0.00 4.57
81 82 4.574013 CCTACTGCTTGGAAGATTCATGTC 59.426 45.833 0.00 0.00 0.00 3.06
110 111 4.604490 TGTTTAGGGGGATTACTCCAGTTT 59.396 41.667 1.05 0.00 44.08 2.66
174 177 3.629855 TCAGCAGTGTATAGCTCTCAGTC 59.370 47.826 0.00 0.00 39.50 3.51
192 195 0.874390 TGGAAGACGCACAATTCAGC 59.126 50.000 0.00 0.00 0.00 4.26
215 218 2.286826 TCAGGACCCTGACCGAATG 58.713 57.895 14.37 0.00 46.80 2.67
216 219 4.887957 TCAGGACCCTGACCGAAT 57.112 55.556 14.37 0.00 46.80 3.34
228 231 9.513906 TGTTTCTAACATTATGTTGATTCAGGA 57.486 29.630 19.55 1.58 41.30 3.86
240 243 9.023962 TCTCCTGCAAATTGTTTCTAACATTAT 57.976 29.630 0.00 0.00 41.79 1.28
242 245 7.288810 TCTCCTGCAAATTGTTTCTAACATT 57.711 32.000 0.00 0.00 41.79 2.71
244 247 6.489700 TGATCTCCTGCAAATTGTTTCTAACA 59.510 34.615 0.00 0.00 40.21 2.41
350 353 4.083484 GGTGTAGTTCAGTTGTGCCATAAC 60.083 45.833 0.00 0.00 0.00 1.89
367 370 4.082190 TGTCTTACTTAGCTGCTGGTGTAG 60.082 45.833 13.43 12.05 0.00 2.74
397 400 0.389391 CAGTGACGACCCAGTCTGTT 59.611 55.000 0.00 0.00 41.47 3.16
481 484 5.045359 AGGAGTTGAATGAATGGTGATCTGA 60.045 40.000 0.00 0.00 0.00 3.27
488 491 4.219288 GCTGAAAGGAGTTGAATGAATGGT 59.781 41.667 0.00 0.00 0.00 3.55
572 575 2.965147 GATGCGCGACTTGTTGGCA 61.965 57.895 12.10 0.00 38.09 4.92
674 677 2.226674 GACTTTGGTGCTCTGGCTTTAC 59.773 50.000 0.00 0.00 39.59 2.01
777 780 6.429692 ACCATTTTTGACAATATCGTCTCACA 59.570 34.615 0.00 0.00 36.82 3.58
811 814 1.449601 CGGGTCATGTAGTGGTGCC 60.450 63.158 0.00 0.00 0.00 5.01
829 832 5.546526 TGTTTCAGGGCAAATTTTATGGAC 58.453 37.500 0.00 0.00 0.00 4.02
836 839 4.703379 TGGAATGTTTCAGGGCAAATTT 57.297 36.364 0.00 0.00 0.00 1.82
842 845 3.129988 CAGATCTTGGAATGTTTCAGGGC 59.870 47.826 0.00 0.00 0.00 5.19
961 964 0.254462 TTGACACTGGCACTGTTGGA 59.746 50.000 1.29 0.00 38.84 3.53
999 1004 3.079578 ACTGTGAATCCTGACAAGCATG 58.920 45.455 0.00 0.00 0.00 4.06
1025 1030 3.009115 TCCCTTTGGCCTCCTCCG 61.009 66.667 3.32 0.00 0.00 4.63
1053 1058 1.133025 CATTCGAGGGCAACATGGTTC 59.867 52.381 0.00 0.00 39.74 3.62
1174 1182 0.324285 AGAGAGAAAGGCTGTGCTGG 59.676 55.000 0.00 0.00 0.00 4.85
1456 1467 1.002257 TGATGCATGGACCGCTGTT 60.002 52.632 2.46 0.00 0.00 3.16
1659 1670 2.562296 AGCTTTCCAGACCCTCCAATA 58.438 47.619 0.00 0.00 0.00 1.90
1832 1849 3.405464 CGACACGCCTGTTGTTGT 58.595 55.556 0.00 0.00 0.00 3.32
1961 1981 2.663075 CCTACAGCCAGCAGCCTCA 61.663 63.158 0.00 0.00 45.47 3.86
2016 2036 2.813474 CCGACGATCTTTGCGCCA 60.813 61.111 4.18 0.00 0.00 5.69
2082 2102 1.291939 AGGCCCCCAATATTGCTTCTT 59.708 47.619 10.11 0.00 0.00 2.52
2134 2154 2.636830 CAGATTCTCTGCCAAATCCGT 58.363 47.619 0.00 0.00 37.72 4.69
2302 2322 4.727448 GCACAACAACACTTTTGCATTTCC 60.727 41.667 0.00 0.00 0.00 3.13
2455 2475 4.992951 TGATCAGCACATAGAATTCCGATG 59.007 41.667 13.77 13.77 34.55 3.84
2458 2478 5.237996 ACATTGATCAGCACATAGAATTCCG 59.762 40.000 0.65 0.00 0.00 4.30
2535 2562 4.376340 AGAAAACAGCACAAAACTGGAG 57.624 40.909 0.00 0.00 39.55 3.86
2630 2657 0.393808 GGGAAGCAGGCGACCATTTA 60.394 55.000 10.67 0.00 0.00 1.40
2649 2676 1.067565 TGCTAGAAGTCCAGCTCGTTG 60.068 52.381 0.00 0.00 38.63 4.10
2818 3449 4.167652 TCTGAGAGCTAACCCTAGGTAC 57.832 50.000 8.29 0.00 35.98 3.34
2865 3496 2.711009 AGTGATTGGAAAGGGTCAGTCA 59.289 45.455 0.00 0.00 0.00 3.41
2868 3499 4.459337 GGTAAAGTGATTGGAAAGGGTCAG 59.541 45.833 0.00 0.00 0.00 3.51
2878 3509 6.240549 AGGAGTAGATGGTAAAGTGATTGG 57.759 41.667 0.00 0.00 0.00 3.16
2945 4070 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2946 4071 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2947 4072 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2951 4076 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2953 4078 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2961 4086 5.574188 AGAAGTACTCCCTCCGTAAACTAA 58.426 41.667 0.00 0.00 0.00 2.24
2962 4087 5.184892 AGAAGTACTCCCTCCGTAAACTA 57.815 43.478 0.00 0.00 0.00 2.24
2970 4095 2.312390 CAGGCTAGAAGTACTCCCTCC 58.688 57.143 0.00 0.00 31.14 4.30
2996 4121 3.679389 TGAGGCAGATTTTGAGGAGAAC 58.321 45.455 0.00 0.00 0.00 3.01
2999 4124 2.015587 GCTGAGGCAGATTTTGAGGAG 58.984 52.381 0.00 0.00 38.54 3.69
3017 4142 1.737816 CAAGGTGCTTGCACTTGCT 59.262 52.632 22.55 10.65 42.66 3.91
3030 4155 3.709653 TGCGGAGTATCTATTTCCAAGGT 59.290 43.478 0.00 0.00 33.73 3.50
3032 4157 3.743396 GCTGCGGAGTATCTATTTCCAAG 59.257 47.826 5.62 0.00 33.73 3.61
3062 4192 2.880890 GTGCAGACAATCAAGTTGAGGT 59.119 45.455 11.91 11.70 40.37 3.85
3079 4209 7.549842 CCAAATCATGAAAATTGGATTAGTGCA 59.450 33.333 23.72 0.00 44.01 4.57
3095 4803 4.022416 GGCAACACAGTAACCAAATCATGA 60.022 41.667 0.00 0.00 0.00 3.07
3203 5113 6.147328 GCATATCGGAAGGGAACAAGTAATAC 59.853 42.308 0.00 0.00 0.00 1.89
3268 5178 1.221466 ACGCCGATATGATTGCCACG 61.221 55.000 0.00 0.00 0.00 4.94
3340 5251 6.045931 ACCATCAATATCCTATTGTCCCATGT 59.954 38.462 6.74 0.00 0.00 3.21
3428 5372 5.915196 GTGAACAATAAAAAGGTGCACTCTC 59.085 40.000 17.98 0.00 37.94 3.20
3432 5376 4.356289 ACGTGAACAATAAAAAGGTGCAC 58.644 39.130 8.80 8.80 37.66 4.57
3441 5385 7.195839 TCATGATGACAACGTGAACAATAAA 57.804 32.000 5.23 0.00 31.57 1.40
3450 5394 2.934553 AGATGCTCATGATGACAACGTG 59.065 45.455 0.00 0.00 0.00 4.49
3451 5395 3.257469 AGATGCTCATGATGACAACGT 57.743 42.857 0.00 0.00 0.00 3.99
3504 5448 3.000925 CGTACCATGGTCGTTAAATGCTC 59.999 47.826 23.76 0.00 0.00 4.26
3510 5454 3.735820 GCAGATCGTACCATGGTCGTTAA 60.736 47.826 23.76 9.53 0.00 2.01
3514 5552 0.934901 CGCAGATCGTACCATGGTCG 60.935 60.000 23.76 23.17 0.00 4.79
3517 5555 0.318441 ATCCGCAGATCGTACCATGG 59.682 55.000 11.19 11.19 36.19 3.66
3532 5570 1.065401 GTGACTCTCAGAGCTCATCCG 59.935 57.143 17.77 1.09 32.04 4.18
3562 5600 1.004277 GGGGCAGATCACCAACTACAA 59.996 52.381 7.07 0.00 0.00 2.41
3590 5628 0.606604 TGGAAGTACGGTGGAAGAGC 59.393 55.000 0.00 0.00 0.00 4.09
3607 5645 5.532557 TCGTCATATGCTAATCAAGACTGG 58.467 41.667 0.00 0.00 0.00 4.00
3620 5658 3.433615 GCTAGGGATGTTTCGTCATATGC 59.566 47.826 0.00 0.00 0.00 3.14
3627 5665 1.679032 GCCAAGCTAGGGATGTTTCGT 60.679 52.381 8.47 0.00 0.00 3.85
3628 5666 1.017387 GCCAAGCTAGGGATGTTTCG 58.983 55.000 8.47 0.00 0.00 3.46
3630 5668 2.450476 CAAGCCAAGCTAGGGATGTTT 58.550 47.619 8.47 0.00 38.25 2.83
3632 5670 0.257039 CCAAGCCAAGCTAGGGATGT 59.743 55.000 8.47 0.00 38.25 3.06
3636 5674 1.379044 CACCCAAGCCAAGCTAGGG 60.379 63.158 9.61 0.00 45.20 3.53
3658 5696 5.521735 ACATGATTAGCAGAGATGTTTCGTC 59.478 40.000 0.00 0.00 0.00 4.20
3659 5697 5.423015 ACATGATTAGCAGAGATGTTTCGT 58.577 37.500 0.00 0.00 0.00 3.85
3660 5698 5.521372 TGACATGATTAGCAGAGATGTTTCG 59.479 40.000 0.00 0.00 0.00 3.46
3661 5699 6.238320 GGTGACATGATTAGCAGAGATGTTTC 60.238 42.308 0.00 0.00 0.00 2.78
3663 5701 5.121811 GGTGACATGATTAGCAGAGATGTT 58.878 41.667 0.00 0.00 0.00 2.71
3664 5702 4.701765 GGTGACATGATTAGCAGAGATGT 58.298 43.478 0.00 0.00 0.00 3.06
3666 5704 3.638627 TCGGTGACATGATTAGCAGAGAT 59.361 43.478 0.00 0.00 0.00 2.75
3667 5705 3.023832 TCGGTGACATGATTAGCAGAGA 58.976 45.455 0.00 0.00 0.00 3.10
3668 5706 3.443099 TCGGTGACATGATTAGCAGAG 57.557 47.619 0.00 0.00 0.00 3.35
3669 5707 3.384467 TCATCGGTGACATGATTAGCAGA 59.616 43.478 0.00 0.00 0.00 4.26
3670 5708 3.721035 TCATCGGTGACATGATTAGCAG 58.279 45.455 0.00 0.00 0.00 4.24
3693 5758 1.555075 GCTGTGTCTGTTATCTCCCCA 59.445 52.381 0.00 0.00 0.00 4.96
3694 5759 1.134371 GGCTGTGTCTGTTATCTCCCC 60.134 57.143 0.00 0.00 0.00 4.81
3695 5760 1.555075 TGGCTGTGTCTGTTATCTCCC 59.445 52.381 0.00 0.00 0.00 4.30
3701 5766 4.359434 TTTACCATGGCTGTGTCTGTTA 57.641 40.909 13.04 0.00 0.00 2.41
3708 5773 4.892433 TGGAAATTTTTACCATGGCTGTG 58.108 39.130 13.04 0.00 0.00 3.66
3731 5798 8.093307 TCATGCACTAGAATTAGATCTTCCATC 58.907 37.037 0.00 0.00 0.00 3.51
3785 5852 7.158021 CACTGAACAGGGAGATCCTATAATTC 58.842 42.308 6.76 0.00 46.12 2.17
3793 5860 2.303022 TGAACACTGAACAGGGAGATCC 59.697 50.000 11.18 0.00 35.36 3.36
3795 5862 2.039084 GGTGAACACTGAACAGGGAGAT 59.961 50.000 11.18 0.00 35.36 2.75
3796 5863 1.416401 GGTGAACACTGAACAGGGAGA 59.584 52.381 11.18 0.00 35.36 3.71
3802 5869 7.284261 TCTCATTAAAATGGTGAACACTGAACA 59.716 33.333 4.96 0.00 37.03 3.18
3803 5870 7.648142 TCTCATTAAAATGGTGAACACTGAAC 58.352 34.615 4.96 0.00 37.03 3.18
3804 5871 7.815840 TCTCATTAAAATGGTGAACACTGAA 57.184 32.000 4.96 0.00 37.03 3.02
3805 5872 8.408043 AATCTCATTAAAATGGTGAACACTGA 57.592 30.769 4.96 0.00 37.03 3.41
3806 5873 9.778993 CTAATCTCATTAAAATGGTGAACACTG 57.221 33.333 4.96 0.00 37.03 3.66
3807 5874 8.960591 CCTAATCTCATTAAAATGGTGAACACT 58.039 33.333 4.96 0.00 37.03 3.55
3808 5875 8.739972 ACCTAATCTCATTAAAATGGTGAACAC 58.260 33.333 3.00 0.00 37.03 3.32
3827 5894 7.393515 ACCTCTTATTTCAACCAACACCTAATC 59.606 37.037 0.00 0.00 0.00 1.75
3828 5895 7.238710 ACCTCTTATTTCAACCAACACCTAAT 58.761 34.615 0.00 0.00 0.00 1.73
3835 5902 5.048713 CACCTGACCTCTTATTTCAACCAAC 60.049 44.000 0.00 0.00 0.00 3.77
3839 5906 5.412904 CCTTCACCTGACCTCTTATTTCAAC 59.587 44.000 0.00 0.00 0.00 3.18
3857 5924 3.553922 CCTCTCACTGACTTGTCCTTCAC 60.554 52.174 0.00 0.00 0.00 3.18
3863 5930 2.029470 CCTGTCCTCTCACTGACTTGTC 60.029 54.545 0.00 0.00 32.67 3.18
3873 5940 1.570979 TCTGCTATCCCTGTCCTCTCA 59.429 52.381 0.00 0.00 0.00 3.27
3907 5974 8.743714 TCAGGCTGATATGTGTTATATGTAGAG 58.256 37.037 14.43 0.00 0.00 2.43
3914 5981 8.478775 AGTTACTCAGGCTGATATGTGTTATA 57.521 34.615 19.11 0.00 0.00 0.98
3921 5988 6.462500 AGCAATAGTTACTCAGGCTGATATG 58.538 40.000 19.11 9.24 0.00 1.78
3931 5998 5.738619 TGGTCTTCAGCAATAGTTACTCA 57.261 39.130 0.00 0.00 0.00 3.41
3934 6001 6.651225 AGTCTTTGGTCTTCAGCAATAGTTAC 59.349 38.462 0.00 0.00 39.73 2.50
3940 6007 4.518211 CAGAAGTCTTTGGTCTTCAGCAAT 59.482 41.667 7.48 0.00 39.73 3.56
3984 6051 4.387026 TCCACATGGAATCTTTGGTCTT 57.613 40.909 0.00 0.00 42.18 3.01
4008 6075 9.606631 AGTATATCTGACATTTCAACTCTTTCC 57.393 33.333 0.00 0.00 0.00 3.13
4090 6157 1.474077 CCATAACTTTGAGCCAGGTGC 59.526 52.381 0.00 0.00 41.71 5.01
4198 6269 8.321353 TGAACATGAATAAGTCTGACTACCAAT 58.679 33.333 11.30 0.00 0.00 3.16
4225 6296 0.251165 ACCGCCTGGCAAATGTACTT 60.251 50.000 20.29 0.00 39.70 2.24
4651 6737 3.610040 TGAGCTGTTGGAATATCGTGT 57.390 42.857 0.00 0.00 0.00 4.49
4678 6764 1.414550 TGACCATGACAACCTTGACGA 59.585 47.619 0.00 0.00 0.00 4.20
4707 6793 8.718734 GTTGTACTTGTTCTCTTTATTCCGAAT 58.281 33.333 0.00 0.00 0.00 3.34
4727 6815 5.063564 GCTCTAGTGCATAACCAAGTTGTAC 59.936 44.000 11.82 0.00 0.00 2.90
4773 6869 6.855763 TTTGGTGCATCAAGATTCCTTTAT 57.144 33.333 13.02 0.00 0.00 1.40
4778 6874 4.240096 CAGTTTTGGTGCATCAAGATTCC 58.760 43.478 13.02 0.00 0.00 3.01
4837 6933 3.542648 AGAGATGCCACTGAACATCATG 58.457 45.455 12.10 0.00 44.16 3.07
4864 6966 4.100963 TCACAAACTCCACTCTTCTAGCAA 59.899 41.667 0.00 0.00 0.00 3.91
4871 6973 6.591935 TGTAATTCTCACAAACTCCACTCTT 58.408 36.000 0.00 0.00 0.00 2.85
4945 7091 9.784531 TCTAAGCATAATTTAGCAGAGCTTATT 57.215 29.630 0.00 1.13 40.82 1.40
4946 7092 9.434420 CTCTAAGCATAATTTAGCAGAGCTTAT 57.566 33.333 0.00 0.00 40.82 1.73
4949 7095 6.825610 ACTCTAAGCATAATTTAGCAGAGCT 58.174 36.000 14.05 0.00 43.41 4.09
4950 7096 7.870445 ACTACTCTAAGCATAATTTAGCAGAGC 59.130 37.037 14.05 0.00 35.49 4.09
4951 7097 9.757227 AACTACTCTAAGCATAATTTAGCAGAG 57.243 33.333 13.18 13.18 37.10 3.35
4954 7100 7.715249 CCCAACTACTCTAAGCATAATTTAGCA 59.285 37.037 4.87 0.00 0.00 3.49
4956 7102 7.173390 GGCCCAACTACTCTAAGCATAATTTAG 59.827 40.741 0.00 0.00 0.00 1.85
4957 7103 6.996282 GGCCCAACTACTCTAAGCATAATTTA 59.004 38.462 0.00 0.00 0.00 1.40
4958 7104 5.828328 GGCCCAACTACTCTAAGCATAATTT 59.172 40.000 0.00 0.00 0.00 1.82
4959 7105 5.104109 TGGCCCAACTACTCTAAGCATAATT 60.104 40.000 0.00 0.00 0.00 1.40
4960 7106 4.412199 TGGCCCAACTACTCTAAGCATAAT 59.588 41.667 0.00 0.00 0.00 1.28
4961 7107 3.778075 TGGCCCAACTACTCTAAGCATAA 59.222 43.478 0.00 0.00 0.00 1.90
4962 7108 3.380393 TGGCCCAACTACTCTAAGCATA 58.620 45.455 0.00 0.00 0.00 3.14
4963 7109 2.196595 TGGCCCAACTACTCTAAGCAT 58.803 47.619 0.00 0.00 0.00 3.79
4964 7110 1.651737 TGGCCCAACTACTCTAAGCA 58.348 50.000 0.00 0.00 0.00 3.91
4965 7111 2.565841 CATGGCCCAACTACTCTAAGC 58.434 52.381 0.00 0.00 0.00 3.09
4966 7112 2.158755 CCCATGGCCCAACTACTCTAAG 60.159 54.545 6.09 0.00 0.00 2.18
4967 7113 1.843851 CCCATGGCCCAACTACTCTAA 59.156 52.381 6.09 0.00 0.00 2.10
4968 7114 1.507140 CCCATGGCCCAACTACTCTA 58.493 55.000 6.09 0.00 0.00 2.43
4969 7115 1.281925 CCCCATGGCCCAACTACTCT 61.282 60.000 6.09 0.00 0.00 3.24
4970 7116 1.227383 CCCCATGGCCCAACTACTC 59.773 63.158 6.09 0.00 0.00 2.59
4971 7117 0.849094 TTCCCCATGGCCCAACTACT 60.849 55.000 6.09 0.00 0.00 2.57
4990 7152 4.017591 TGGGATGGGATGTGTTCTTGTATT 60.018 41.667 0.00 0.00 0.00 1.89
4991 7153 3.527253 TGGGATGGGATGTGTTCTTGTAT 59.473 43.478 0.00 0.00 0.00 2.29
5010 7191 4.898829 TTGCTCGATCAATTTACATGGG 57.101 40.909 0.00 0.00 0.00 4.00
5011 7192 5.276270 CCTTTGCTCGATCAATTTACATGG 58.724 41.667 2.02 0.00 0.00 3.66
5012 7193 5.163622 ACCCTTTGCTCGATCAATTTACATG 60.164 40.000 2.02 0.00 0.00 3.21
5014 7195 4.331968 ACCCTTTGCTCGATCAATTTACA 58.668 39.130 2.02 0.00 0.00 2.41
5015 7196 4.494199 CGACCCTTTGCTCGATCAATTTAC 60.494 45.833 2.02 0.00 31.24 2.01
5016 7197 3.621268 CGACCCTTTGCTCGATCAATTTA 59.379 43.478 2.02 0.00 31.24 1.40
5019 7200 1.207089 TCGACCCTTTGCTCGATCAAT 59.793 47.619 2.02 0.00 34.04 2.57
5020 7201 0.606096 TCGACCCTTTGCTCGATCAA 59.394 50.000 0.00 0.00 34.04 2.57
5021 7202 0.824109 ATCGACCCTTTGCTCGATCA 59.176 50.000 0.86 0.00 44.43 2.92
5022 7203 1.212616 CATCGACCCTTTGCTCGATC 58.787 55.000 3.56 0.00 45.60 3.69
5024 7205 1.447838 GCATCGACCCTTTGCTCGA 60.448 57.895 0.73 0.00 42.79 4.04
5025 7206 1.448540 AGCATCGACCCTTTGCTCG 60.449 57.895 4.65 0.00 42.88 5.03
5026 7207 4.625800 AGCATCGACCCTTTGCTC 57.374 55.556 4.65 0.00 42.88 4.26
5029 7210 2.081526 CGTGAGCATCGACCCTTTG 58.918 57.895 0.00 0.00 38.61 2.77
5043 7224 2.094390 GGAGTAGTACATGTTGGCGTGA 60.094 50.000 2.30 0.00 35.65 4.35
5044 7225 2.268298 GGAGTAGTACATGTTGGCGTG 58.732 52.381 2.30 0.00 37.62 5.34
5047 7228 2.158943 GGAGGGAGTAGTACATGTTGGC 60.159 54.545 2.30 0.00 0.00 4.52
5048 7229 2.100916 CGGAGGGAGTAGTACATGTTGG 59.899 54.545 2.30 0.00 0.00 3.77
5049 7230 2.758979 ACGGAGGGAGTAGTACATGTTG 59.241 50.000 2.30 0.00 0.00 3.33
5050 7231 3.097342 ACGGAGGGAGTAGTACATGTT 57.903 47.619 2.30 0.00 0.00 2.71
5052 7233 2.361438 GGAACGGAGGGAGTAGTACATG 59.639 54.545 2.52 0.00 0.00 3.21
5053 7234 2.664015 GGAACGGAGGGAGTAGTACAT 58.336 52.381 2.52 0.00 0.00 2.29
5054 7235 1.341383 GGGAACGGAGGGAGTAGTACA 60.341 57.143 2.52 0.00 0.00 2.90
5055 7236 1.341383 TGGGAACGGAGGGAGTAGTAC 60.341 57.143 0.00 0.00 0.00 2.73
5056 7237 1.002069 TGGGAACGGAGGGAGTAGTA 58.998 55.000 0.00 0.00 0.00 1.82
5057 7238 0.614134 GTGGGAACGGAGGGAGTAGT 60.614 60.000 0.00 0.00 0.00 2.73
5058 7239 0.613853 TGTGGGAACGGAGGGAGTAG 60.614 60.000 0.00 0.00 0.00 2.57
5060 7241 0.042131 TATGTGGGAACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
5061 7242 1.424638 ATATGTGGGAACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
5063 7244 2.969950 TCTTATATGTGGGAACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
5064 7245 3.244112 GGTCTTATATGTGGGAACGGAGG 60.244 52.174 0.00 0.00 0.00 4.30
5066 7247 3.649843 AGGTCTTATATGTGGGAACGGA 58.350 45.455 0.00 0.00 0.00 4.69
5067 7248 4.417426 AAGGTCTTATATGTGGGAACGG 57.583 45.455 0.00 0.00 0.00 4.44
5068 7249 7.270047 TCTAAAAGGTCTTATATGTGGGAACG 58.730 38.462 0.00 0.00 0.00 3.95
5069 7250 8.483758 TCTCTAAAAGGTCTTATATGTGGGAAC 58.516 37.037 0.00 0.00 0.00 3.62
5070 7251 8.618240 TCTCTAAAAGGTCTTATATGTGGGAA 57.382 34.615 0.00 0.00 0.00 3.97
5071 7252 8.798975 ATCTCTAAAAGGTCTTATATGTGGGA 57.201 34.615 0.00 0.00 0.00 4.37
5072 7253 9.495572 GAATCTCTAAAAGGTCTTATATGTGGG 57.504 37.037 0.00 0.00 0.00 4.61
5073 7254 9.495572 GGAATCTCTAAAAGGTCTTATATGTGG 57.504 37.037 0.00 0.00 0.00 4.17
5082 7263 9.620259 GTTCATAATGGAATCTCTAAAAGGTCT 57.380 33.333 0.00 0.00 0.00 3.85
5083 7264 9.620259 AGTTCATAATGGAATCTCTAAAAGGTC 57.380 33.333 0.00 0.00 0.00 3.85
5134 7315 8.677300 GCAAAATGGATGAATCTACACTCTAAA 58.323 33.333 0.00 0.00 0.00 1.85
5135 7316 8.049117 AGCAAAATGGATGAATCTACACTCTAA 58.951 33.333 0.00 0.00 0.00 2.10
5136 7317 7.568349 AGCAAAATGGATGAATCTACACTCTA 58.432 34.615 0.00 0.00 0.00 2.43
5137 7318 6.421485 AGCAAAATGGATGAATCTACACTCT 58.579 36.000 0.00 0.00 0.00 3.24
5138 7319 6.238593 GGAGCAAAATGGATGAATCTACACTC 60.239 42.308 0.00 0.00 0.00 3.51
5139 7320 5.591877 GGAGCAAAATGGATGAATCTACACT 59.408 40.000 0.00 0.00 0.00 3.55
5140 7321 5.504665 CGGAGCAAAATGGATGAATCTACAC 60.505 44.000 0.00 0.00 0.00 2.90
5141 7322 4.576053 CGGAGCAAAATGGATGAATCTACA 59.424 41.667 0.00 0.00 0.00 2.74
5142 7323 4.576463 ACGGAGCAAAATGGATGAATCTAC 59.424 41.667 0.00 0.00 0.00 2.59
5143 7324 4.780815 ACGGAGCAAAATGGATGAATCTA 58.219 39.130 0.00 0.00 0.00 1.98
5144 7325 3.624777 ACGGAGCAAAATGGATGAATCT 58.375 40.909 0.00 0.00 0.00 2.40
5145 7326 5.009010 ACATACGGAGCAAAATGGATGAATC 59.991 40.000 0.00 0.00 0.00 2.52
5146 7327 4.889409 ACATACGGAGCAAAATGGATGAAT 59.111 37.500 0.00 0.00 0.00 2.57
5147 7328 4.269183 ACATACGGAGCAAAATGGATGAA 58.731 39.130 0.00 0.00 0.00 2.57
5148 7329 3.884895 ACATACGGAGCAAAATGGATGA 58.115 40.909 0.00 0.00 0.00 2.92
5149 7330 4.816385 ACTACATACGGAGCAAAATGGATG 59.184 41.667 0.00 0.00 0.00 3.51
5150 7331 5.036117 ACTACATACGGAGCAAAATGGAT 57.964 39.130 0.00 0.00 0.00 3.41
5151 7332 4.439057 GACTACATACGGAGCAAAATGGA 58.561 43.478 0.00 0.00 0.00 3.41
5152 7333 3.560068 GGACTACATACGGAGCAAAATGG 59.440 47.826 0.00 0.00 0.00 3.16
5153 7334 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
5154 7335 3.118884 ACGGACTACATACGGAGCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
5155 7336 2.231964 ACGGACTACATACGGAGCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
5156 7337 1.820519 ACGGACTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
5157 7338 1.466856 ACGGACTACATACGGAGCAA 58.533 50.000 0.00 0.00 0.00 3.91
5158 7339 2.216046 CTACGGACTACATACGGAGCA 58.784 52.381 0.00 0.00 31.15 4.26
5159 7340 2.032204 CACTACGGACTACATACGGAGC 60.032 54.545 0.00 0.00 42.12 4.70
5160 7341 3.461061 TCACTACGGACTACATACGGAG 58.539 50.000 0.00 0.00 43.89 4.63
5161 7342 3.541996 TCACTACGGACTACATACGGA 57.458 47.619 0.00 0.00 0.00 4.69
5162 7343 4.621068 TTTCACTACGGACTACATACGG 57.379 45.455 0.00 0.00 0.00 4.02
5163 7344 6.018098 AGAGATTTCACTACGGACTACATACG 60.018 42.308 0.00 0.00 0.00 3.06
5164 7345 7.261829 AGAGATTTCACTACGGACTACATAC 57.738 40.000 0.00 0.00 0.00 2.39
5165 7346 8.969260 TTAGAGATTTCACTACGGACTACATA 57.031 34.615 0.00 0.00 0.00 2.29
5166 7347 7.876936 TTAGAGATTTCACTACGGACTACAT 57.123 36.000 0.00 0.00 0.00 2.29
5167 7348 7.692460 TTTAGAGATTTCACTACGGACTACA 57.308 36.000 0.00 0.00 0.00 2.74
5168 7349 7.701501 CCTTTTAGAGATTTCACTACGGACTAC 59.298 40.741 0.00 0.00 0.00 2.73
5169 7350 7.395489 ACCTTTTAGAGATTTCACTACGGACTA 59.605 37.037 0.00 0.00 0.00 2.59
5170 7351 6.210984 ACCTTTTAGAGATTTCACTACGGACT 59.789 38.462 0.00 0.00 0.00 3.85
5171 7352 6.396450 ACCTTTTAGAGATTTCACTACGGAC 58.604 40.000 0.00 0.00 0.00 4.79
5172 7353 6.436532 AGACCTTTTAGAGATTTCACTACGGA 59.563 38.462 0.00 0.00 0.00 4.69
5173 7354 6.631962 AGACCTTTTAGAGATTTCACTACGG 58.368 40.000 0.00 0.00 0.00 4.02
5174 7355 9.804758 ATAAGACCTTTTAGAGATTTCACTACG 57.195 33.333 0.00 0.00 0.00 3.51
5189 7370 9.907229 CCTCTGTTCCTAAATATAAGACCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
5190 7371 8.495260 CCCTCTGTTCCTAAATATAAGACCTTT 58.505 37.037 0.00 0.00 0.00 3.11
5191 7372 7.849904 TCCCTCTGTTCCTAAATATAAGACCTT 59.150 37.037 0.00 0.00 0.00 3.50
5192 7373 7.371043 TCCCTCTGTTCCTAAATATAAGACCT 58.629 38.462 0.00 0.00 0.00 3.85
5193 7374 7.290481 ACTCCCTCTGTTCCTAAATATAAGACC 59.710 40.741 0.00 0.00 0.00 3.85
5194 7375 8.252624 ACTCCCTCTGTTCCTAAATATAAGAC 57.747 38.462 0.00 0.00 0.00 3.01
5195 7376 9.589461 CTACTCCCTCTGTTCCTAAATATAAGA 57.411 37.037 0.00 0.00 0.00 2.10
5196 7377 9.369672 ACTACTCCCTCTGTTCCTAAATATAAG 57.630 37.037 0.00 0.00 0.00 1.73
5197 7378 9.725206 AACTACTCCCTCTGTTCCTAAATATAA 57.275 33.333 0.00 0.00 0.00 0.98
5199 7380 9.145442 GTAACTACTCCCTCTGTTCCTAAATAT 57.855 37.037 0.00 0.00 0.00 1.28
5200 7381 8.342270 AGTAACTACTCCCTCTGTTCCTAAATA 58.658 37.037 0.00 0.00 0.00 1.40
5201 7382 7.190501 AGTAACTACTCCCTCTGTTCCTAAAT 58.809 38.462 0.00 0.00 0.00 1.40
5202 7383 6.559429 AGTAACTACTCCCTCTGTTCCTAAA 58.441 40.000 0.00 0.00 0.00 1.85
5203 7384 6.150034 AGTAACTACTCCCTCTGTTCCTAA 57.850 41.667 0.00 0.00 0.00 2.69
5204 7385 5.793034 AGTAACTACTCCCTCTGTTCCTA 57.207 43.478 0.00 0.00 0.00 2.94
5205 7386 4.678538 AGTAACTACTCCCTCTGTTCCT 57.321 45.455 0.00 0.00 0.00 3.36
5206 7387 7.421087 AATAAGTAACTACTCCCTCTGTTCC 57.579 40.000 0.00 0.00 34.99 3.62
5207 7388 8.529476 TGAAATAAGTAACTACTCCCTCTGTTC 58.471 37.037 0.00 0.00 34.99 3.18
5208 7389 8.312564 GTGAAATAAGTAACTACTCCCTCTGTT 58.687 37.037 0.00 0.00 34.99 3.16
5209 7390 7.453752 TGTGAAATAAGTAACTACTCCCTCTGT 59.546 37.037 0.00 0.00 34.99 3.41
5210 7391 7.760340 GTGTGAAATAAGTAACTACTCCCTCTG 59.240 40.741 0.00 0.00 34.99 3.35
5211 7392 7.093421 GGTGTGAAATAAGTAACTACTCCCTCT 60.093 40.741 0.00 0.00 34.99 3.69
5212 7393 7.040494 GGTGTGAAATAAGTAACTACTCCCTC 58.960 42.308 0.00 0.00 34.99 4.30
5213 7394 6.070366 GGGTGTGAAATAAGTAACTACTCCCT 60.070 42.308 0.00 0.00 37.39 4.20
5214 7395 6.111382 GGGTGTGAAATAAGTAACTACTCCC 58.889 44.000 0.00 0.00 34.99 4.30
5215 7396 6.704310 TGGGTGTGAAATAAGTAACTACTCC 58.296 40.000 0.00 0.00 34.99 3.85
5216 7397 8.788325 ATTGGGTGTGAAATAAGTAACTACTC 57.212 34.615 0.00 0.00 34.99 2.59
5224 7405 8.032451 CCGAATTTAATTGGGTGTGAAATAAGT 58.968 33.333 10.05 0.00 33.92 2.24
5225 7406 7.010091 GCCGAATTTAATTGGGTGTGAAATAAG 59.990 37.037 17.64 0.00 39.94 1.73
5226 7407 6.814146 GCCGAATTTAATTGGGTGTGAAATAA 59.186 34.615 17.64 0.00 39.94 1.40
5227 7408 6.334202 GCCGAATTTAATTGGGTGTGAAATA 58.666 36.000 17.64 0.00 39.94 1.40
5233 7414 2.422127 CTCGCCGAATTTAATTGGGTGT 59.578 45.455 24.24 0.00 45.35 4.16
5255 7436 1.808411 TTTCGGATGTGAGTGCCTTC 58.192 50.000 0.00 0.00 0.00 3.46
5259 7440 1.199789 TGCATTTTCGGATGTGAGTGC 59.800 47.619 0.00 0.00 0.00 4.40
5335 7517 2.228343 GGTACTGCTGTCTTCTACACGT 59.772 50.000 0.00 0.00 33.45 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.