Multiple sequence alignment - TraesCS5A01G028800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G028800 chr5A 100.000 2837 0 0 1 2837 24197070 24199906 0.000000e+00 5240.0
1 TraesCS5A01G028800 chr5A 90.959 1283 70 27 868 2130 23907973 23906717 0.000000e+00 1685.0
2 TraesCS5A01G028800 chr5A 98.795 581 6 1 1 581 659483976 659484555 0.000000e+00 1033.0
3 TraesCS5A01G028800 chr5A 81.633 980 108 29 1275 2220 649784934 649783993 0.000000e+00 747.0
4 TraesCS5A01G028800 chr5A 84.036 664 62 22 621 1251 649785570 649784918 1.450000e-167 599.0
5 TraesCS5A01G028800 chr5A 94.141 256 7 4 578 827 23908224 23907971 1.590000e-102 383.0
6 TraesCS5A01G028800 chr5D 87.998 1633 92 55 622 2222 35651858 35653418 0.000000e+00 1834.0
7 TraesCS5A01G028800 chr5D 89.860 572 53 4 1271 1838 521404560 521403990 0.000000e+00 730.0
8 TraesCS5A01G028800 chr5D 83.772 684 61 27 592 1251 521405197 521404540 1.120000e-168 603.0
9 TraesCS5A01G028800 chr5D 90.476 126 12 0 2420 2545 35658427 35658552 1.750000e-37 167.0
10 TraesCS5A01G028800 chrUn 88.378 1566 98 40 614 2121 318995958 318997497 0.000000e+00 1807.0
11 TraesCS5A01G028800 chrUn 86.675 1561 95 58 618 2120 271013821 271015326 0.000000e+00 1626.0
12 TraesCS5A01G028800 chrUn 86.675 1561 95 58 618 2120 280884508 280886013 0.000000e+00 1626.0
13 TraesCS5A01G028800 chrUn 88.964 1332 85 26 841 2121 397775235 397776555 0.000000e+00 1589.0
14 TraesCS5A01G028800 chrUn 83.133 83 11 2 2758 2837 9948435 9948517 3.920000e-09 73.1
15 TraesCS5A01G028800 chr3A 98.623 581 6 2 1 580 64752411 64752990 0.000000e+00 1027.0
16 TraesCS5A01G028800 chr3A 94.366 71 3 1 2473 2542 19358466 19358536 1.070000e-19 108.0
17 TraesCS5A01G028800 chr2A 97.931 580 10 2 1 580 693539617 693540194 0.000000e+00 1003.0
18 TraesCS5A01G028800 chr2A 96.988 166 5 0 2548 2713 43139889 43140054 2.150000e-71 279.0
19 TraesCS5A01G028800 chr2A 92.973 185 13 0 2238 2422 505337061 505337245 1.300000e-68 270.0
20 TraesCS5A01G028800 chr2A 95.732 164 7 0 2548 2711 71626244 71626081 6.030000e-67 265.0
21 TraesCS5A01G028800 chr2A 90.547 201 15 4 2236 2433 196517962 196518161 2.170000e-66 263.0
22 TraesCS5A01G028800 chr2A 87.387 111 14 0 2727 2837 194713314 194713204 8.250000e-26 128.0
23 TraesCS5A01G028800 chr2A 89.130 46 5 0 2743 2788 230422810 230422855 1.100000e-04 58.4
24 TraesCS5A01G028800 chr2D 91.837 588 39 7 1 585 575792242 575792823 0.000000e+00 811.0
25 TraesCS5A01G028800 chr2D 92.697 178 11 2 2541 2716 32474296 32474473 3.630000e-64 255.0
26 TraesCS5A01G028800 chr2D 93.103 174 10 2 2539 2711 130727682 130727510 1.300000e-63 254.0
27 TraesCS5A01G028800 chr4A 91.795 585 40 7 1 580 610821619 610822200 0.000000e+00 808.0
28 TraesCS5A01G028800 chr4A 98.281 349 6 0 1 349 682738045 682738393 1.870000e-171 612.0
29 TraesCS5A01G028800 chr4A 94.022 184 8 1 2241 2421 124610225 124610408 2.780000e-70 276.0
30 TraesCS5A01G028800 chr4A 88.679 212 20 4 2241 2449 544173534 544173324 3.630000e-64 255.0
31 TraesCS5A01G028800 chr4A 95.425 153 7 0 429 581 682738918 682739070 7.850000e-61 244.0
32 TraesCS5A01G028800 chr4A 97.701 87 1 1 345 431 682738612 682738697 6.330000e-32 148.0
33 TraesCS5A01G028800 chr7B 91.767 583 42 6 1 580 378385200 378385779 0.000000e+00 806.0
34 TraesCS5A01G028800 chr7B 86.316 95 13 0 2743 2837 13129880 13129974 1.390000e-18 104.0
35 TraesCS5A01G028800 chr5B 90.261 575 48 5 1271 1838 657722574 657722001 0.000000e+00 745.0
36 TraesCS5A01G028800 chr5B 84.195 658 60 19 610 1247 657723192 657722559 1.450000e-167 599.0
37 TraesCS5A01G028800 chr5B 78.832 137 26 3 447 581 548952113 548951978 3.890000e-14 89.8
38 TraesCS5A01G028800 chr7A 93.085 188 13 0 2235 2422 547686439 547686626 2.780000e-70 276.0
39 TraesCS5A01G028800 chr7A 89.873 79 7 1 2472 2550 559202995 559203072 1.800000e-17 100.0
40 TraesCS5A01G028800 chr1D 93.122 189 10 1 2242 2427 493673643 493673831 1.000000e-69 274.0
41 TraesCS5A01G028800 chr1D 88.462 78 9 0 2472 2549 365244370 365244447 8.370000e-16 95.3
42 TraesCS5A01G028800 chr1A 92.308 195 11 2 2228 2419 271887421 271887614 1.000000e-69 274.0
43 TraesCS5A01G028800 chr1A 92.188 192 12 3 2229 2420 581544082 581543894 4.660000e-68 268.0
44 TraesCS5A01G028800 chr1A 93.678 174 9 2 2542 2714 443126939 443127111 2.800000e-65 259.0
45 TraesCS5A01G028800 chr1A 86.878 221 23 6 2504 2722 548414312 548414096 2.820000e-60 243.0
46 TraesCS5A01G028800 chr1A 89.744 78 8 0 2472 2549 587354469 587354546 1.800000e-17 100.0
47 TraesCS5A01G028800 chr6A 90.955 199 16 2 2234 2430 234189761 234189563 1.680000e-67 267.0
48 TraesCS5A01G028800 chr6A 94.118 170 10 0 2547 2716 604587856 604588025 2.800000e-65 259.0
49 TraesCS5A01G028800 chr4D 93.605 172 10 1 2546 2716 173125679 173125850 3.630000e-64 255.0
50 TraesCS5A01G028800 chr7D 90.909 187 15 2 2529 2714 598525661 598525846 1.690000e-62 250.0
51 TraesCS5A01G028800 chr7D 90.667 75 7 0 2476 2550 194080971 194080897 1.800000e-17 100.0
52 TraesCS5A01G028800 chr3D 93.939 66 4 0 2473 2538 535778282 535778347 1.800000e-17 100.0
53 TraesCS5A01G028800 chr4B 90.541 74 7 0 2477 2550 299167716 299167643 6.470000e-17 99.0
54 TraesCS5A01G028800 chr6D 88.462 78 9 0 2472 2549 165527071 165527148 8.370000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G028800 chr5A 24197070 24199906 2836 False 5240.000000 5240 100.000000 1 2837 1 chr5A.!!$F1 2836
1 TraesCS5A01G028800 chr5A 23906717 23908224 1507 True 1034.000000 1685 92.550000 578 2130 2 chr5A.!!$R1 1552
2 TraesCS5A01G028800 chr5A 659483976 659484555 579 False 1033.000000 1033 98.795000 1 581 1 chr5A.!!$F2 580
3 TraesCS5A01G028800 chr5A 649783993 649785570 1577 True 673.000000 747 82.834500 621 2220 2 chr5A.!!$R2 1599
4 TraesCS5A01G028800 chr5D 35651858 35653418 1560 False 1834.000000 1834 87.998000 622 2222 1 chr5D.!!$F1 1600
5 TraesCS5A01G028800 chr5D 521403990 521405197 1207 True 666.500000 730 86.816000 592 1838 2 chr5D.!!$R1 1246
6 TraesCS5A01G028800 chrUn 318995958 318997497 1539 False 1807.000000 1807 88.378000 614 2121 1 chrUn.!!$F4 1507
7 TraesCS5A01G028800 chrUn 271013821 271015326 1505 False 1626.000000 1626 86.675000 618 2120 1 chrUn.!!$F2 1502
8 TraesCS5A01G028800 chrUn 280884508 280886013 1505 False 1626.000000 1626 86.675000 618 2120 1 chrUn.!!$F3 1502
9 TraesCS5A01G028800 chrUn 397775235 397776555 1320 False 1589.000000 1589 88.964000 841 2121 1 chrUn.!!$F5 1280
10 TraesCS5A01G028800 chr3A 64752411 64752990 579 False 1027.000000 1027 98.623000 1 580 1 chr3A.!!$F2 579
11 TraesCS5A01G028800 chr2A 693539617 693540194 577 False 1003.000000 1003 97.931000 1 580 1 chr2A.!!$F5 579
12 TraesCS5A01G028800 chr2D 575792242 575792823 581 False 811.000000 811 91.837000 1 585 1 chr2D.!!$F2 584
13 TraesCS5A01G028800 chr4A 610821619 610822200 581 False 808.000000 808 91.795000 1 580 1 chr4A.!!$F2 579
14 TraesCS5A01G028800 chr4A 682738045 682739070 1025 False 334.666667 612 97.135667 1 581 3 chr4A.!!$F3 580
15 TraesCS5A01G028800 chr7B 378385200 378385779 579 False 806.000000 806 91.767000 1 580 1 chr7B.!!$F2 579
16 TraesCS5A01G028800 chr5B 657722001 657723192 1191 True 672.000000 745 87.228000 610 1838 2 chr5B.!!$R2 1228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 1284 0.391661 ATTGCACCTCTACTGGCGTG 60.392 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 2445 0.040425 GTTTCCGGTGTGTGTGATGC 60.04 55.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 9.113838 CAAGAGGTGTTAATCTGTGCTATTAAT 57.886 33.333 0.00 0.00 32.87 1.40
401 627 7.169982 GCACTATTTCGCTCAGTATCAACTAAT 59.830 37.037 0.00 0.00 33.48 1.73
596 1048 7.331026 TGGTCTAGTTTATCTGAGAAATGTGG 58.669 38.462 0.33 0.00 0.00 4.17
810 1281 5.665459 CCTATATATTGCACCTCTACTGGC 58.335 45.833 0.00 0.00 0.00 4.85
811 1282 2.533266 ATATTGCACCTCTACTGGCG 57.467 50.000 0.00 0.00 0.00 5.69
812 1283 1.191535 TATTGCACCTCTACTGGCGT 58.808 50.000 0.00 0.00 0.00 5.68
813 1284 0.391661 ATTGCACCTCTACTGGCGTG 60.392 55.000 0.00 0.00 0.00 5.34
814 1285 2.125512 GCACCTCTACTGGCGTGG 60.126 66.667 0.00 0.00 0.00 4.94
828 1299 2.224426 TGGCGTGGTGAAAGATGTAACT 60.224 45.455 0.00 0.00 0.00 2.24
830 1301 3.998341 GGCGTGGTGAAAGATGTAACTTA 59.002 43.478 0.00 0.00 0.00 2.24
832 1303 5.123344 GGCGTGGTGAAAGATGTAACTTAAT 59.877 40.000 0.00 0.00 0.00 1.40
833 1304 6.314400 GGCGTGGTGAAAGATGTAACTTAATA 59.686 38.462 0.00 0.00 0.00 0.98
834 1305 7.148373 GGCGTGGTGAAAGATGTAACTTAATAA 60.148 37.037 0.00 0.00 0.00 1.40
996 1524 1.538047 ATCACACAAGCGGCTGAATT 58.462 45.000 1.81 0.00 0.00 2.17
1183 1711 2.064581 ACCGAGCACTACCCCATCC 61.065 63.158 0.00 0.00 0.00 3.51
1379 1946 4.821589 CGCCCGCCTCAAGGAGAC 62.822 72.222 0.00 0.00 37.14 3.36
1515 2088 1.141019 GAAGATGGAGGTGCGCGTA 59.859 57.895 8.43 0.00 0.00 4.42
1608 2196 0.323629 GGATGTCGGTGGAGGTGAAA 59.676 55.000 0.00 0.00 0.00 2.69
1614 2202 1.774300 GGTGGAGGTGAAATGGGGT 59.226 57.895 0.00 0.00 0.00 4.95
1841 2429 2.320587 CCGGAGGCGCTTGATATGC 61.321 63.158 7.64 0.00 46.14 3.14
1842 2430 1.595109 CGGAGGCGCTTGATATGCA 60.595 57.895 7.64 0.00 0.00 3.96
1843 2431 0.952497 CGGAGGCGCTTGATATGCAT 60.952 55.000 7.64 3.79 0.00 3.96
1844 2432 0.520404 GGAGGCGCTTGATATGCATG 59.480 55.000 10.16 0.00 0.00 4.06
1857 2445 7.620600 GCTTGATATGCATGTTTTGTTCTTGTG 60.621 37.037 10.16 0.00 0.00 3.33
1874 2462 1.147153 TGCATCACACACACCGGAA 59.853 52.632 9.46 0.00 0.00 4.30
1875 2463 0.464554 TGCATCACACACACCGGAAA 60.465 50.000 9.46 0.00 0.00 3.13
1882 2474 0.040157 CACACACCGGAAACATGCTG 60.040 55.000 9.46 0.00 0.00 4.41
1946 2550 3.009026 AGTCGTTATGTTGCATGCATGA 58.991 40.909 30.64 11.58 0.00 3.07
1956 2560 4.201802 TGTTGCATGCATGATACGTACTTG 60.202 41.667 30.64 0.46 0.00 3.16
1974 2582 7.228706 ACGTACTTGACCATTTCATTTCTTTCT 59.771 33.333 0.00 0.00 32.84 2.52
1975 2583 7.746475 CGTACTTGACCATTTCATTTCTTTCTC 59.254 37.037 0.00 0.00 32.84 2.87
1986 2598 6.252967 TCATTTCTTTCTCGCAAATTGCTA 57.747 33.333 16.42 4.04 42.25 3.49
2022 2656 3.444703 AACGATCCTGAAGAAGATCCG 57.555 47.619 0.00 0.00 36.36 4.18
2050 2684 5.530915 TGTTGGGTTAAGATGTCAACAAGAG 59.469 40.000 0.00 0.00 42.81 2.85
2115 2754 6.803807 GTCTCTGACTTTTGCAATTATCAACC 59.196 38.462 0.00 0.00 0.00 3.77
2121 2760 5.920273 ACTTTTGCAATTATCAACCGAACAG 59.080 36.000 0.00 0.00 0.00 3.16
2122 2761 3.485947 TGCAATTATCAACCGAACAGC 57.514 42.857 0.00 0.00 0.00 4.40
2243 2906 9.877178 CACTTAAGAGGATTACTTATTGAGTGT 57.123 33.333 10.09 0.00 37.65 3.55
2244 2907 9.877178 ACTTAAGAGGATTACTTATTGAGTGTG 57.123 33.333 10.09 0.00 39.48 3.82
2245 2908 9.877178 CTTAAGAGGATTACTTATTGAGTGTGT 57.123 33.333 0.00 0.00 39.48 3.72
2246 2909 9.871238 TTAAGAGGATTACTTATTGAGTGTGTC 57.129 33.333 0.00 0.00 39.48 3.67
2247 2910 7.726033 AGAGGATTACTTATTGAGTGTGTCT 57.274 36.000 0.00 0.00 39.48 3.41
2248 2911 8.824756 AGAGGATTACTTATTGAGTGTGTCTA 57.175 34.615 0.00 0.00 39.48 2.59
2249 2912 8.908903 AGAGGATTACTTATTGAGTGTGTCTAG 58.091 37.037 0.00 0.00 39.48 2.43
2250 2913 8.012957 AGGATTACTTATTGAGTGTGTCTAGG 57.987 38.462 0.00 0.00 39.48 3.02
2251 2914 7.839705 AGGATTACTTATTGAGTGTGTCTAGGA 59.160 37.037 0.00 0.00 39.48 2.94
2252 2915 7.921745 GGATTACTTATTGAGTGTGTCTAGGAC 59.078 40.741 0.00 0.00 39.48 3.85
2253 2916 7.770366 TTACTTATTGAGTGTGTCTAGGACA 57.230 36.000 0.00 0.00 38.54 4.02
2288 2951 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
2289 2952 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
2290 2953 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
2291 2954 7.168972 GCTCTAGTTATTGCACATCTAAGTGAG 59.831 40.741 0.00 0.00 42.05 3.51
2292 2955 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
2293 2956 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
2294 2957 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
2295 2958 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
2296 2959 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
2297 2960 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
2298 2961 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
2299 2962 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
2300 2963 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
2301 2964 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
2302 2965 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
2303 2966 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
2304 2967 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
2305 2968 8.043113 ACATCTAAGTGAGTGAATCAAGCATAA 58.957 33.333 0.00 0.00 40.43 1.90
2306 2969 8.886719 CATCTAAGTGAGTGAATCAAGCATAAA 58.113 33.333 0.00 0.00 40.43 1.40
2307 2970 8.846943 TCTAAGTGAGTGAATCAAGCATAAAA 57.153 30.769 0.00 0.00 40.43 1.52
2308 2971 9.283768 TCTAAGTGAGTGAATCAAGCATAAAAA 57.716 29.630 0.00 0.00 40.43 1.94
2309 2972 9.552114 CTAAGTGAGTGAATCAAGCATAAAAAG 57.448 33.333 0.00 0.00 40.43 2.27
2310 2973 6.917533 AGTGAGTGAATCAAGCATAAAAAGG 58.082 36.000 0.00 0.00 40.43 3.11
2311 2974 6.716628 AGTGAGTGAATCAAGCATAAAAAGGA 59.283 34.615 0.00 0.00 40.43 3.36
2312 2975 7.231317 AGTGAGTGAATCAAGCATAAAAAGGAA 59.769 33.333 0.00 0.00 40.43 3.36
2313 2976 7.867403 GTGAGTGAATCAAGCATAAAAAGGAAA 59.133 33.333 0.00 0.00 40.43 3.13
2314 2977 8.420222 TGAGTGAATCAAGCATAAAAAGGAAAA 58.580 29.630 0.00 0.00 34.02 2.29
2315 2978 9.260002 GAGTGAATCAAGCATAAAAAGGAAAAA 57.740 29.630 0.00 0.00 0.00 1.94
2339 3002 6.885735 AAAGAAAAAGAAAACATCCACACG 57.114 33.333 0.00 0.00 0.00 4.49
2340 3003 5.828299 AGAAAAAGAAAACATCCACACGA 57.172 34.783 0.00 0.00 0.00 4.35
2341 3004 6.202516 AGAAAAAGAAAACATCCACACGAA 57.797 33.333 0.00 0.00 0.00 3.85
2342 3005 6.033966 AGAAAAAGAAAACATCCACACGAAC 58.966 36.000 0.00 0.00 0.00 3.95
2343 3006 3.982576 AAGAAAACATCCACACGAACC 57.017 42.857 0.00 0.00 0.00 3.62
2344 3007 3.208747 AGAAAACATCCACACGAACCT 57.791 42.857 0.00 0.00 0.00 3.50
2345 3008 3.139077 AGAAAACATCCACACGAACCTC 58.861 45.455 0.00 0.00 0.00 3.85
2346 3009 2.631160 AAACATCCACACGAACCTCA 57.369 45.000 0.00 0.00 0.00 3.86
2347 3010 2.631160 AACATCCACACGAACCTCAA 57.369 45.000 0.00 0.00 0.00 3.02
2348 3011 2.859165 ACATCCACACGAACCTCAAT 57.141 45.000 0.00 0.00 0.00 2.57
2349 3012 2.426522 ACATCCACACGAACCTCAATG 58.573 47.619 0.00 0.00 0.00 2.82
2350 3013 2.224523 ACATCCACACGAACCTCAATGT 60.225 45.455 0.00 0.00 0.00 2.71
2351 3014 3.007506 ACATCCACACGAACCTCAATGTA 59.992 43.478 0.00 0.00 0.00 2.29
2352 3015 3.973206 TCCACACGAACCTCAATGTAT 57.027 42.857 0.00 0.00 0.00 2.29
2353 3016 3.595173 TCCACACGAACCTCAATGTATG 58.405 45.455 0.00 0.00 0.00 2.39
2354 3017 3.259625 TCCACACGAACCTCAATGTATGA 59.740 43.478 0.00 0.00 36.38 2.15
2355 3018 4.081142 TCCACACGAACCTCAATGTATGAT 60.081 41.667 0.00 0.00 37.44 2.45
2356 3019 4.271049 CCACACGAACCTCAATGTATGATC 59.729 45.833 0.00 0.00 37.44 2.92
2357 3020 4.869861 CACACGAACCTCAATGTATGATCA 59.130 41.667 0.00 0.00 37.44 2.92
2358 3021 5.351189 CACACGAACCTCAATGTATGATCAA 59.649 40.000 0.00 0.00 37.44 2.57
2359 3022 6.037500 CACACGAACCTCAATGTATGATCAAT 59.962 38.462 0.00 0.00 37.44 2.57
2360 3023 6.037500 ACACGAACCTCAATGTATGATCAATG 59.962 38.462 0.00 0.00 37.44 2.82
2361 3024 6.258507 CACGAACCTCAATGTATGATCAATGA 59.741 38.462 0.00 0.00 37.44 2.57
2362 3025 6.258727 ACGAACCTCAATGTATGATCAATGAC 59.741 38.462 0.00 0.00 37.44 3.06
2363 3026 6.258507 CGAACCTCAATGTATGATCAATGACA 59.741 38.462 0.00 5.18 37.44 3.58
2364 3027 7.041576 CGAACCTCAATGTATGATCAATGACAT 60.042 37.037 12.92 12.92 37.44 3.06
2365 3028 9.276590 GAACCTCAATGTATGATCAATGACATA 57.723 33.333 17.00 6.44 37.44 2.29
2366 3029 8.843885 ACCTCAATGTATGATCAATGACATAG 57.156 34.615 17.00 12.93 37.44 2.23
2367 3030 7.881751 ACCTCAATGTATGATCAATGACATAGG 59.118 37.037 21.87 21.87 37.44 2.57
2368 3031 8.098912 CCTCAATGTATGATCAATGACATAGGA 58.901 37.037 20.45 17.63 37.44 2.94
2369 3032 8.837788 TCAATGTATGATCAATGACATAGGAC 57.162 34.615 17.00 0.70 32.31 3.85
2370 3033 8.654094 TCAATGTATGATCAATGACATAGGACT 58.346 33.333 17.00 3.97 32.31 3.85
2371 3034 9.281371 CAATGTATGATCAATGACATAGGACTT 57.719 33.333 17.00 4.04 32.31 3.01
2374 3037 9.367160 TGTATGATCAATGACATAGGACTTAGA 57.633 33.333 0.00 0.00 31.07 2.10
2377 3040 8.255111 TGATCAATGACATAGGACTTAGATGT 57.745 34.615 0.00 0.00 36.52 3.06
2378 3041 8.146412 TGATCAATGACATAGGACTTAGATGTG 58.854 37.037 0.00 0.00 33.99 3.21
2379 3042 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
2380 3043 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
2381 3044 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
2382 3045 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
2383 3046 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
2384 3047 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
2385 3048 7.069950 TGACATAGGACTTAGATGTGCAATACT 59.930 37.037 0.00 0.00 33.99 2.12
2386 3049 7.796054 ACATAGGACTTAGATGTGCAATACTT 58.204 34.615 0.00 0.00 32.62 2.24
2387 3050 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
2388 3051 9.935241 CATAGGACTTAGATGTGCAATACTTAT 57.065 33.333 0.00 0.00 0.00 1.73
2389 3052 9.935241 ATAGGACTTAGATGTGCAATACTTATG 57.065 33.333 0.00 0.00 0.00 1.90
2390 3053 8.023021 AGGACTTAGATGTGCAATACTTATGA 57.977 34.615 0.00 0.00 0.00 2.15
2391 3054 7.928706 AGGACTTAGATGTGCAATACTTATGAC 59.071 37.037 0.00 0.00 0.00 3.06
2392 3055 7.710907 GGACTTAGATGTGCAATACTTATGACA 59.289 37.037 0.00 0.00 0.00 3.58
2393 3056 8.425577 ACTTAGATGTGCAATACTTATGACAC 57.574 34.615 0.00 0.00 0.00 3.67
2394 3057 8.040727 ACTTAGATGTGCAATACTTATGACACA 58.959 33.333 0.00 0.00 38.34 3.72
2395 3058 8.962884 TTAGATGTGCAATACTTATGACACAT 57.037 30.769 13.39 13.39 42.56 3.21
2397 3060 7.488187 GATGTGCAATACTTATGACACATCT 57.512 36.000 22.83 7.26 45.69 2.90
2398 3061 8.593492 GATGTGCAATACTTATGACACATCTA 57.407 34.615 22.83 2.36 45.69 1.98
2399 3062 8.599055 ATGTGCAATACTTATGACACATCTAG 57.401 34.615 9.84 0.00 39.26 2.43
2400 3063 7.781056 TGTGCAATACTTATGACACATCTAGA 58.219 34.615 0.00 0.00 33.26 2.43
2401 3064 8.424133 TGTGCAATACTTATGACACATCTAGAT 58.576 33.333 0.00 0.00 33.26 1.98
2402 3065 8.706936 GTGCAATACTTATGACACATCTAGATG 58.293 37.037 27.63 27.63 44.15 2.90
2419 3082 9.155975 CATCTAGATGTACTTTAGCAAAACTGT 57.844 33.333 22.42 0.00 34.23 3.55
2420 3083 9.726438 ATCTAGATGTACTTTAGCAAAACTGTT 57.274 29.630 3.89 0.00 0.00 3.16
2423 3086 8.904099 AGATGTACTTTAGCAAAACTGTTACT 57.096 30.769 0.00 0.00 0.00 2.24
2424 3087 9.338622 AGATGTACTTTAGCAAAACTGTTACTT 57.661 29.630 0.00 0.00 0.00 2.24
2434 3097 8.854614 AGCAAAACTGTTACTTAATCTCATCT 57.145 30.769 0.00 0.00 0.00 2.90
2435 3098 9.944376 AGCAAAACTGTTACTTAATCTCATCTA 57.056 29.630 0.00 0.00 0.00 1.98
2451 3114 9.863650 AATCTCATCTATCAAATTGATCAAGGT 57.136 29.630 12.23 0.00 38.26 3.50
2460 3123 7.938140 TCAAATTGATCAAGGTAAACTAGGG 57.062 36.000 14.54 0.00 0.00 3.53
2461 3124 7.466804 TCAAATTGATCAAGGTAAACTAGGGT 58.533 34.615 14.54 0.00 0.00 4.34
2462 3125 8.607713 TCAAATTGATCAAGGTAAACTAGGGTA 58.392 33.333 14.54 0.00 0.00 3.69
2463 3126 9.408648 CAAATTGATCAAGGTAAACTAGGGTAT 57.591 33.333 14.54 0.00 0.00 2.73
2466 3129 8.612486 TTGATCAAGGTAAACTAGGGTATACA 57.388 34.615 3.38 0.00 0.00 2.29
2467 3130 8.612486 TGATCAAGGTAAACTAGGGTATACAA 57.388 34.615 5.01 0.00 0.00 2.41
2468 3131 9.049050 TGATCAAGGTAAACTAGGGTATACAAA 57.951 33.333 5.01 0.00 0.00 2.83
2499 3162 9.620259 ATTCCCTTTGTTTTTATTTACTTTGCA 57.380 25.926 0.00 0.00 0.00 4.08
2500 3163 9.620259 TTCCCTTTGTTTTTATTTACTTTGCAT 57.380 25.926 0.00 0.00 0.00 3.96
2515 3178 6.442513 ACTTTGCATATTAGCTTTGTCTCC 57.557 37.500 0.00 0.00 34.99 3.71
2516 3179 5.945784 ACTTTGCATATTAGCTTTGTCTCCA 59.054 36.000 0.00 0.00 34.99 3.86
2517 3180 6.094603 ACTTTGCATATTAGCTTTGTCTCCAG 59.905 38.462 0.00 0.00 34.99 3.86
2518 3181 5.102953 TGCATATTAGCTTTGTCTCCAGT 57.897 39.130 0.00 0.00 34.99 4.00
2519 3182 5.118990 TGCATATTAGCTTTGTCTCCAGTC 58.881 41.667 0.00 0.00 34.99 3.51
2520 3183 5.118990 GCATATTAGCTTTGTCTCCAGTCA 58.881 41.667 0.00 0.00 0.00 3.41
2521 3184 5.586243 GCATATTAGCTTTGTCTCCAGTCAA 59.414 40.000 0.00 0.00 0.00 3.18
2522 3185 6.094048 GCATATTAGCTTTGTCTCCAGTCAAA 59.906 38.462 0.00 0.17 33.44 2.69
2523 3186 5.948992 ATTAGCTTTGTCTCCAGTCAAAC 57.051 39.130 0.00 0.00 31.74 2.93
2524 3187 3.567478 AGCTTTGTCTCCAGTCAAACT 57.433 42.857 0.00 0.00 31.74 2.66
2525 3188 3.891049 AGCTTTGTCTCCAGTCAAACTT 58.109 40.909 0.00 0.00 31.74 2.66
2526 3189 4.273318 AGCTTTGTCTCCAGTCAAACTTT 58.727 39.130 0.00 0.00 31.74 2.66
2527 3190 4.336713 AGCTTTGTCTCCAGTCAAACTTTC 59.663 41.667 0.00 0.00 31.74 2.62
2528 3191 4.336713 GCTTTGTCTCCAGTCAAACTTTCT 59.663 41.667 0.00 0.00 31.74 2.52
2529 3192 5.527582 GCTTTGTCTCCAGTCAAACTTTCTA 59.472 40.000 0.00 0.00 31.74 2.10
2530 3193 6.038271 GCTTTGTCTCCAGTCAAACTTTCTAA 59.962 38.462 0.00 0.00 31.74 2.10
2531 3194 7.415206 GCTTTGTCTCCAGTCAAACTTTCTAAA 60.415 37.037 0.00 0.00 31.74 1.85
2532 3195 6.920569 TGTCTCCAGTCAAACTTTCTAAAC 57.079 37.500 0.00 0.00 0.00 2.01
2533 3196 6.650120 TGTCTCCAGTCAAACTTTCTAAACT 58.350 36.000 0.00 0.00 0.00 2.66
2534 3197 7.110155 TGTCTCCAGTCAAACTTTCTAAACTT 58.890 34.615 0.00 0.00 0.00 2.66
2535 3198 7.610305 TGTCTCCAGTCAAACTTTCTAAACTTT 59.390 33.333 0.00 0.00 0.00 2.66
2536 3199 7.910683 GTCTCCAGTCAAACTTTCTAAACTTTG 59.089 37.037 2.84 2.84 0.00 2.77
2537 3200 7.827236 TCTCCAGTCAAACTTTCTAAACTTTGA 59.173 33.333 6.31 6.31 32.27 2.69
2538 3201 8.519799 TCCAGTCAAACTTTCTAAACTTTGAT 57.480 30.769 11.08 2.68 35.08 2.57
2539 3202 8.621286 TCCAGTCAAACTTTCTAAACTTTGATC 58.379 33.333 11.08 0.00 35.08 2.92
2540 3203 8.405531 CCAGTCAAACTTTCTAAACTTTGATCA 58.594 33.333 11.08 0.00 35.08 2.92
2541 3204 9.787532 CAGTCAAACTTTCTAAACTTTGATCAA 57.212 29.630 3.38 3.38 35.08 2.57
2557 3220 8.361139 ACTTTGATCAAGTATATACTCCTTCCG 58.639 37.037 15.72 4.25 44.56 4.30
2558 3221 7.834881 TTGATCAAGTATATACTCCTTCCGT 57.165 36.000 15.72 0.00 34.99 4.69
2559 3222 7.834881 TGATCAAGTATATACTCCTTCCGTT 57.165 36.000 15.72 0.00 34.99 4.44
2560 3223 8.246430 TGATCAAGTATATACTCCTTCCGTTT 57.754 34.615 15.72 0.00 34.99 3.60
2561 3224 8.701895 TGATCAAGTATATACTCCTTCCGTTTT 58.298 33.333 15.72 0.00 34.99 2.43
2562 3225 9.543783 GATCAAGTATATACTCCTTCCGTTTTT 57.456 33.333 15.72 0.00 34.99 1.94
2574 3237 9.074576 ACTCCTTCCGTTTTTAAATATTTGTCT 57.925 29.630 11.05 0.00 0.00 3.41
2575 3238 9.908152 CTCCTTCCGTTTTTAAATATTTGTCTT 57.092 29.630 11.05 0.00 0.00 3.01
2594 3257 9.921637 TTTGTCTTTTTAGACATTTCAACAAGT 57.078 25.926 8.65 0.00 46.61 3.16
2595 3258 8.909708 TGTCTTTTTAGACATTTCAACAAGTG 57.090 30.769 3.99 0.00 43.09 3.16
2596 3259 8.735315 TGTCTTTTTAGACATTTCAACAAGTGA 58.265 29.630 3.99 0.00 43.09 3.41
2597 3260 9.010366 GTCTTTTTAGACATTTCAACAAGTGAC 57.990 33.333 0.00 0.00 38.59 3.67
2598 3261 8.956426 TCTTTTTAGACATTTCAACAAGTGACT 58.044 29.630 0.00 0.00 35.39 3.41
2600 3263 9.997482 TTTTTAGACATTTCAACAAGTGACTAC 57.003 29.630 0.00 0.00 35.39 2.73
2601 3264 8.725405 TTTAGACATTTCAACAAGTGACTACA 57.275 30.769 0.00 0.00 35.39 2.74
2602 3265 8.902540 TTAGACATTTCAACAAGTGACTACAT 57.097 30.769 0.00 0.00 35.39 2.29
2603 3266 9.990360 TTAGACATTTCAACAAGTGACTACATA 57.010 29.630 0.00 0.00 35.39 2.29
2604 3267 8.311650 AGACATTTCAACAAGTGACTACATAC 57.688 34.615 0.00 0.00 35.39 2.39
2605 3268 7.931407 AGACATTTCAACAAGTGACTACATACA 59.069 33.333 0.00 0.00 35.39 2.29
2606 3269 8.445275 ACATTTCAACAAGTGACTACATACAA 57.555 30.769 0.00 0.00 35.39 2.41
2607 3270 8.898761 ACATTTCAACAAGTGACTACATACAAA 58.101 29.630 0.00 0.00 35.39 2.83
2608 3271 9.385902 CATTTCAACAAGTGACTACATACAAAG 57.614 33.333 0.00 0.00 35.39 2.77
2609 3272 6.539649 TCAACAAGTGACTACATACAAAGC 57.460 37.500 0.00 0.00 0.00 3.51
2610 3273 6.052360 TCAACAAGTGACTACATACAAAGCA 58.948 36.000 0.00 0.00 0.00 3.91
2611 3274 6.540551 TCAACAAGTGACTACATACAAAGCAA 59.459 34.615 0.00 0.00 0.00 3.91
2612 3275 6.935741 ACAAGTGACTACATACAAAGCAAA 57.064 33.333 0.00 0.00 0.00 3.68
2613 3276 7.328277 ACAAGTGACTACATACAAAGCAAAA 57.672 32.000 0.00 0.00 0.00 2.44
2614 3277 7.940850 ACAAGTGACTACATACAAAGCAAAAT 58.059 30.769 0.00 0.00 0.00 1.82
2615 3278 7.862372 ACAAGTGACTACATACAAAGCAAAATG 59.138 33.333 0.00 0.00 0.00 2.32
2616 3279 7.744087 AGTGACTACATACAAAGCAAAATGA 57.256 32.000 0.00 0.00 0.00 2.57
2617 3280 7.810658 AGTGACTACATACAAAGCAAAATGAG 58.189 34.615 0.00 0.00 0.00 2.90
2618 3281 7.445402 AGTGACTACATACAAAGCAAAATGAGT 59.555 33.333 0.00 0.00 0.00 3.41
2619 3282 7.535258 GTGACTACATACAAAGCAAAATGAGTG 59.465 37.037 0.00 0.00 0.00 3.51
2620 3283 7.443879 TGACTACATACAAAGCAAAATGAGTGA 59.556 33.333 0.00 0.00 0.00 3.41
2621 3284 8.165239 ACTACATACAAAGCAAAATGAGTGAA 57.835 30.769 0.00 0.00 0.00 3.18
2622 3285 8.796475 ACTACATACAAAGCAAAATGAGTGAAT 58.204 29.630 0.00 0.00 0.00 2.57
2623 3286 9.282247 CTACATACAAAGCAAAATGAGTGAATC 57.718 33.333 0.00 0.00 0.00 2.52
2624 3287 7.889469 ACATACAAAGCAAAATGAGTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
2625 3288 9.013229 ACATACAAAGCAAAATGAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
2626 3289 9.282247 CATACAAAGCAAAATGAGTGAATCTAC 57.718 33.333 0.00 0.00 0.00 2.59
2627 3290 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
2628 3291 7.141363 ACAAAGCAAAATGAGTGAATCTACAC 58.859 34.615 0.00 0.00 40.60 2.90
2642 3305 9.950496 AGTGAATCTACACTCAAAAATATGTCT 57.050 29.630 0.00 0.00 46.36 3.41
2653 3316 9.261180 ACTCAAAAATATGTCTACATACATCCG 57.739 33.333 4.98 0.00 41.15 4.18
2654 3317 9.261180 CTCAAAAATATGTCTACATACATCCGT 57.739 33.333 4.98 0.00 41.15 4.69
2668 3331 7.490962 CATACATCCGTATGTTGTAACCATT 57.509 36.000 0.00 0.00 46.70 3.16
2669 3332 7.925993 CATACATCCGTATGTTGTAACCATTT 58.074 34.615 0.00 0.00 46.70 2.32
2670 3333 6.189677 ACATCCGTATGTTGTAACCATTTG 57.810 37.500 0.00 0.00 44.07 2.32
2671 3334 5.941058 ACATCCGTATGTTGTAACCATTTGA 59.059 36.000 0.00 0.00 44.07 2.69
2672 3335 6.431543 ACATCCGTATGTTGTAACCATTTGAA 59.568 34.615 0.00 0.00 44.07 2.69
2673 3336 6.879276 TCCGTATGTTGTAACCATTTGAAA 57.121 33.333 0.00 0.00 0.00 2.69
2674 3337 7.455641 TCCGTATGTTGTAACCATTTGAAAT 57.544 32.000 0.00 0.00 0.00 2.17
2675 3338 7.309177 TCCGTATGTTGTAACCATTTGAAATG 58.691 34.615 10.84 10.84 0.00 2.32
2676 3339 7.040340 TCCGTATGTTGTAACCATTTGAAATGT 60.040 33.333 15.93 2.12 0.00 2.71
2677 3340 7.272515 CCGTATGTTGTAACCATTTGAAATGTC 59.727 37.037 15.93 5.28 0.00 3.06
2678 3341 8.020819 CGTATGTTGTAACCATTTGAAATGTCT 58.979 33.333 15.93 5.83 0.00 3.41
2681 3344 8.684386 TGTTGTAACCATTTGAAATGTCTAGA 57.316 30.769 15.93 3.81 0.00 2.43
2682 3345 9.126151 TGTTGTAACCATTTGAAATGTCTAGAA 57.874 29.630 15.93 8.86 0.00 2.10
2683 3346 9.959749 GTTGTAACCATTTGAAATGTCTAGAAA 57.040 29.630 15.93 0.00 0.00 2.52
2685 3348 9.567776 TGTAACCATTTGAAATGTCTAGAAAGA 57.432 29.630 15.93 0.00 0.00 2.52
2705 3368 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
2706 3369 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
2707 3370 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
2708 3371 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
2709 3372 6.718294 ACAAATATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
2710 3373 7.854337 ACAAATATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
2711 3374 7.985752 ACAAATATTTAGAAACGGAGGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
2712 3375 7.672122 AATATTTAGAAACGGAGGGAGTAGT 57.328 36.000 0.00 0.00 0.00 2.73
2713 3376 8.773033 AATATTTAGAAACGGAGGGAGTAGTA 57.227 34.615 0.00 0.00 0.00 1.82
2714 3377 5.904362 TTTAGAAACGGAGGGAGTAGTAC 57.096 43.478 0.00 0.00 0.00 2.73
2715 3378 3.446442 AGAAACGGAGGGAGTAGTACA 57.554 47.619 2.52 0.00 0.00 2.90
2716 3379 3.771216 AGAAACGGAGGGAGTAGTACAA 58.229 45.455 2.52 0.00 0.00 2.41
2717 3380 4.154942 AGAAACGGAGGGAGTAGTACAAA 58.845 43.478 2.52 0.00 0.00 2.83
2718 3381 4.590222 AGAAACGGAGGGAGTAGTACAAAA 59.410 41.667 2.52 0.00 0.00 2.44
2719 3382 4.961438 AACGGAGGGAGTAGTACAAAAA 57.039 40.909 2.52 0.00 0.00 1.94
2720 3383 4.532314 ACGGAGGGAGTAGTACAAAAAG 57.468 45.455 2.52 0.00 0.00 2.27
2721 3384 3.899980 ACGGAGGGAGTAGTACAAAAAGT 59.100 43.478 2.52 0.00 0.00 2.66
2722 3385 4.346127 ACGGAGGGAGTAGTACAAAAAGTT 59.654 41.667 2.52 0.00 0.00 2.66
2723 3386 5.163269 ACGGAGGGAGTAGTACAAAAAGTTT 60.163 40.000 2.52 0.00 0.00 2.66
2724 3387 5.761726 CGGAGGGAGTAGTACAAAAAGTTTT 59.238 40.000 2.52 0.00 0.00 2.43
2758 3421 9.859152 TCCACAATATATACCAAATCAATGTCA 57.141 29.630 0.00 0.00 0.00 3.58
2767 3430 6.608539 ACCAAATCAATGTCATTGGAATCA 57.391 33.333 22.44 6.10 44.01 2.57
2768 3431 7.190335 ACCAAATCAATGTCATTGGAATCAT 57.810 32.000 22.44 8.02 44.01 2.45
2769 3432 7.270047 ACCAAATCAATGTCATTGGAATCATC 58.730 34.615 22.44 0.00 44.01 2.92
2770 3433 7.093245 ACCAAATCAATGTCATTGGAATCATCA 60.093 33.333 22.44 4.10 44.01 3.07
2771 3434 7.931407 CCAAATCAATGTCATTGGAATCATCAT 59.069 33.333 22.44 6.10 44.01 2.45
2772 3435 9.325198 CAAATCAATGTCATTGGAATCATCATT 57.675 29.630 22.44 11.05 40.61 2.57
2773 3436 9.542462 AAATCAATGTCATTGGAATCATCATTC 57.458 29.630 22.44 0.00 40.61 2.67
2774 3437 7.648039 TCAATGTCATTGGAATCATCATTCA 57.352 32.000 22.44 0.00 40.41 2.57
2775 3438 8.068892 TCAATGTCATTGGAATCATCATTCAA 57.931 30.769 22.44 0.00 40.41 2.69
2776 3439 8.700973 TCAATGTCATTGGAATCATCATTCAAT 58.299 29.630 22.44 0.00 40.41 2.57
2777 3440 9.974980 CAATGTCATTGGAATCATCATTCAATA 57.025 29.630 16.53 0.00 40.41 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
596 1048 2.544480 CATCGATCCATGCATGATGC 57.456 50.000 28.31 11.12 45.29 3.91
845 1316 8.633561 GCTTAAAGTGCCTCCTTATATTTCATT 58.366 33.333 0.00 0.00 0.00 2.57
847 1318 6.260050 CGCTTAAAGTGCCTCCTTATATTTCA 59.740 38.462 0.00 0.00 0.00 2.69
848 1319 6.293462 CCGCTTAAAGTGCCTCCTTATATTTC 60.293 42.308 0.00 0.00 0.00 2.17
849 1320 5.531287 CCGCTTAAAGTGCCTCCTTATATTT 59.469 40.000 0.00 0.00 0.00 1.40
996 1524 1.080093 GAACGTCACCTCCATCGCA 60.080 57.895 0.00 0.00 0.00 5.10
1183 1711 2.903357 CACGTGGGATCCCTCCAG 59.097 66.667 31.05 20.20 44.08 3.86
1608 2196 4.740822 GCGGTCTTGGCACCCCAT 62.741 66.667 0.00 0.00 41.78 4.00
1806 2394 1.303317 GGTGACCCTGCCGTTGAAT 60.303 57.895 0.00 0.00 0.00 2.57
1841 2429 4.804665 TGTGATGCACAAGAACAAAACATG 59.195 37.500 0.00 0.00 41.69 3.21
1842 2430 4.805192 GTGTGATGCACAAGAACAAAACAT 59.195 37.500 1.32 0.00 46.28 2.71
1843 2431 4.172505 GTGTGATGCACAAGAACAAAACA 58.827 39.130 1.32 0.00 46.28 2.83
1844 2432 4.760227 GTGTGATGCACAAGAACAAAAC 57.240 40.909 1.32 0.00 46.28 2.43
1857 2445 0.040425 GTTTCCGGTGTGTGTGATGC 60.040 55.000 0.00 0.00 0.00 3.91
1869 2457 1.423845 GTACGCAGCATGTTTCCGG 59.576 57.895 0.00 0.00 39.31 5.14
1871 2459 0.094730 GACGTACGCAGCATGTTTCC 59.905 55.000 16.72 0.00 39.31 3.13
1872 2460 0.094730 GGACGTACGCAGCATGTTTC 59.905 55.000 16.72 1.41 39.31 2.78
1874 2462 0.391130 ATGGACGTACGCAGCATGTT 60.391 50.000 16.72 0.00 39.31 2.71
1875 2463 0.806102 GATGGACGTACGCAGCATGT 60.806 55.000 16.72 0.00 39.31 3.21
1882 2474 0.916581 GTAAACCGATGGACGTACGC 59.083 55.000 16.72 8.19 40.78 4.42
1946 2550 8.561738 AAGAAATGAAATGGTCAAGTACGTAT 57.438 30.769 0.00 0.00 40.50 3.06
1956 2560 5.046910 TGCGAGAAAGAAATGAAATGGTC 57.953 39.130 0.00 0.00 0.00 4.02
1986 2598 9.132923 TCAGGATCGTTAACTCAACTAGATTAT 57.867 33.333 3.71 0.00 34.77 1.28
2022 2656 6.744112 TGTTGACATCTTAACCCAACAAATC 58.256 36.000 0.00 0.00 42.50 2.17
2050 2684 2.280628 CGGAGCAAAGGAATAGGTCAC 58.719 52.381 0.00 0.00 0.00 3.67
2140 2795 7.468141 AATGAAAGTATCTTCCTTCAAACCC 57.532 36.000 0.00 0.00 0.00 4.11
2141 2796 9.841880 GTAAATGAAAGTATCTTCCTTCAAACC 57.158 33.333 0.00 0.00 0.00 3.27
2222 2885 8.140112 AGACACACTCAATAAGTAATCCTCTT 57.860 34.615 0.00 0.00 36.07 2.85
2223 2886 7.726033 AGACACACTCAATAAGTAATCCTCT 57.274 36.000 0.00 0.00 36.07 3.69
2224 2887 8.138712 CCTAGACACACTCAATAAGTAATCCTC 58.861 40.741 0.00 0.00 36.07 3.71
2225 2888 7.839705 TCCTAGACACACTCAATAAGTAATCCT 59.160 37.037 0.00 0.00 36.07 3.24
2226 2889 7.921745 GTCCTAGACACACTCAATAAGTAATCC 59.078 40.741 0.00 0.00 32.56 3.01
2227 2890 8.467598 TGTCCTAGACACACTCAATAAGTAATC 58.532 37.037 0.00 0.00 37.67 1.75
2228 2891 8.362464 TGTCCTAGACACACTCAATAAGTAAT 57.638 34.615 0.00 0.00 37.67 1.89
2229 2892 7.770366 TGTCCTAGACACACTCAATAAGTAA 57.230 36.000 0.00 0.00 37.67 2.24
2264 2927 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
2265 2928 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
2266 2929 8.194104 ACTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
2267 2930 7.976175 CACTCACTTAGATGTGCAATAACTAGA 59.024 37.037 0.00 0.00 37.81 2.43
2268 2931 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
2269 2932 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
2270 2933 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
2271 2934 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
2272 2935 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
2273 2936 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
2274 2937 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
2275 2938 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
2276 2939 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
2277 2940 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
2278 2941 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
2279 2942 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
2280 2943 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
2281 2944 9.453572 TTTTATGCTTGATTCACTCACTTAGAT 57.546 29.630 0.00 0.00 32.17 1.98
2282 2945 8.846943 TTTTATGCTTGATTCACTCACTTAGA 57.153 30.769 0.00 0.00 32.17 2.10
2283 2946 9.552114 CTTTTTATGCTTGATTCACTCACTTAG 57.448 33.333 0.00 0.00 32.17 2.18
2284 2947 8.514594 CCTTTTTATGCTTGATTCACTCACTTA 58.485 33.333 0.00 0.00 32.17 2.24
2285 2948 7.231317 TCCTTTTTATGCTTGATTCACTCACTT 59.769 33.333 0.00 0.00 32.17 3.16
2286 2949 6.716628 TCCTTTTTATGCTTGATTCACTCACT 59.283 34.615 0.00 0.00 32.17 3.41
2287 2950 6.913170 TCCTTTTTATGCTTGATTCACTCAC 58.087 36.000 0.00 0.00 32.17 3.51
2288 2951 7.523293 TTCCTTTTTATGCTTGATTCACTCA 57.477 32.000 0.00 0.00 0.00 3.41
2289 2952 8.816640 TTTTCCTTTTTATGCTTGATTCACTC 57.183 30.769 0.00 0.00 0.00 3.51
2314 2977 7.600752 TCGTGTGGATGTTTTCTTTTTCTTTTT 59.399 29.630 0.00 0.00 0.00 1.94
2315 2978 7.093992 TCGTGTGGATGTTTTCTTTTTCTTTT 58.906 30.769 0.00 0.00 0.00 2.27
2316 2979 6.626302 TCGTGTGGATGTTTTCTTTTTCTTT 58.374 32.000 0.00 0.00 0.00 2.52
2317 2980 6.202516 TCGTGTGGATGTTTTCTTTTTCTT 57.797 33.333 0.00 0.00 0.00 2.52
2318 2981 5.828299 TCGTGTGGATGTTTTCTTTTTCT 57.172 34.783 0.00 0.00 0.00 2.52
2319 2982 5.231357 GGTTCGTGTGGATGTTTTCTTTTTC 59.769 40.000 0.00 0.00 0.00 2.29
2320 2983 5.105513 AGGTTCGTGTGGATGTTTTCTTTTT 60.106 36.000 0.00 0.00 0.00 1.94
2321 2984 4.401202 AGGTTCGTGTGGATGTTTTCTTTT 59.599 37.500 0.00 0.00 0.00 2.27
2322 2985 3.951680 AGGTTCGTGTGGATGTTTTCTTT 59.048 39.130 0.00 0.00 0.00 2.52
2323 2986 3.551846 AGGTTCGTGTGGATGTTTTCTT 58.448 40.909 0.00 0.00 0.00 2.52
2324 2987 3.139077 GAGGTTCGTGTGGATGTTTTCT 58.861 45.455 0.00 0.00 0.00 2.52
2325 2988 2.875933 TGAGGTTCGTGTGGATGTTTTC 59.124 45.455 0.00 0.00 0.00 2.29
2326 2989 2.925724 TGAGGTTCGTGTGGATGTTTT 58.074 42.857 0.00 0.00 0.00 2.43
2327 2990 2.631160 TGAGGTTCGTGTGGATGTTT 57.369 45.000 0.00 0.00 0.00 2.83
2328 2991 2.631160 TTGAGGTTCGTGTGGATGTT 57.369 45.000 0.00 0.00 0.00 2.71
2329 2992 2.224523 ACATTGAGGTTCGTGTGGATGT 60.225 45.455 0.00 0.00 0.00 3.06
2330 2993 2.426522 ACATTGAGGTTCGTGTGGATG 58.573 47.619 0.00 0.00 0.00 3.51
2331 2994 2.859165 ACATTGAGGTTCGTGTGGAT 57.141 45.000 0.00 0.00 0.00 3.41
2332 2995 3.259625 TCATACATTGAGGTTCGTGTGGA 59.740 43.478 0.00 0.00 0.00 4.02
2333 2996 3.595173 TCATACATTGAGGTTCGTGTGG 58.405 45.455 0.00 0.00 0.00 4.17
2334 2997 4.869861 TGATCATACATTGAGGTTCGTGTG 59.130 41.667 0.00 0.00 37.89 3.82
2335 2998 5.084818 TGATCATACATTGAGGTTCGTGT 57.915 39.130 0.00 0.00 37.89 4.49
2336 2999 6.258507 TCATTGATCATACATTGAGGTTCGTG 59.741 38.462 0.00 0.00 37.89 4.35
2337 3000 6.258727 GTCATTGATCATACATTGAGGTTCGT 59.741 38.462 0.00 0.00 37.89 3.85
2338 3001 6.258507 TGTCATTGATCATACATTGAGGTTCG 59.741 38.462 0.00 0.00 37.89 3.95
2339 3002 7.558161 TGTCATTGATCATACATTGAGGTTC 57.442 36.000 0.00 0.00 37.89 3.62
2340 3003 9.281371 CTATGTCATTGATCATACATTGAGGTT 57.719 33.333 18.46 2.96 37.89 3.50
2341 3004 7.881751 CCTATGTCATTGATCATACATTGAGGT 59.118 37.037 18.46 3.49 37.89 3.85
2342 3005 8.098912 TCCTATGTCATTGATCATACATTGAGG 58.901 37.037 18.46 18.45 37.89 3.86
2343 3006 8.933807 GTCCTATGTCATTGATCATACATTGAG 58.066 37.037 18.46 12.89 37.89 3.02
2344 3007 8.654094 AGTCCTATGTCATTGATCATACATTGA 58.346 33.333 18.46 14.17 39.12 2.57
2345 3008 8.843885 AGTCCTATGTCATTGATCATACATTG 57.156 34.615 18.46 16.54 34.54 2.82
2348 3011 9.367160 TCTAAGTCCTATGTCATTGATCATACA 57.633 33.333 0.00 2.25 0.00 2.29
2351 3014 8.878211 ACATCTAAGTCCTATGTCATTGATCAT 58.122 33.333 0.00 0.00 0.00 2.45
2352 3015 8.146412 CACATCTAAGTCCTATGTCATTGATCA 58.854 37.037 0.00 0.00 31.60 2.92
2353 3016 7.117523 GCACATCTAAGTCCTATGTCATTGATC 59.882 40.741 0.00 0.00 31.60 2.92
2354 3017 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
2355 3018 6.127083 TGCACATCTAAGTCCTATGTCATTGA 60.127 38.462 0.00 0.00 31.60 2.57
2356 3019 6.051074 TGCACATCTAAGTCCTATGTCATTG 58.949 40.000 0.00 0.00 31.60 2.82
2357 3020 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
2358 3021 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
2359 3022 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
2360 3023 7.437748 AGTATTGCACATCTAAGTCCTATGTC 58.562 38.462 0.00 0.00 31.60 3.06
2361 3024 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
2362 3025 9.935241 ATAAGTATTGCACATCTAAGTCCTATG 57.065 33.333 0.00 0.00 0.00 2.23
2363 3026 9.935241 CATAAGTATTGCACATCTAAGTCCTAT 57.065 33.333 0.00 0.00 0.00 2.57
2364 3027 9.143155 TCATAAGTATTGCACATCTAAGTCCTA 57.857 33.333 0.00 0.00 0.00 2.94
2365 3028 7.928706 GTCATAAGTATTGCACATCTAAGTCCT 59.071 37.037 0.00 0.00 0.00 3.85
2366 3029 7.710907 TGTCATAAGTATTGCACATCTAAGTCC 59.289 37.037 0.00 0.00 0.00 3.85
2367 3030 8.543774 GTGTCATAAGTATTGCACATCTAAGTC 58.456 37.037 0.00 0.00 0.00 3.01
2368 3031 8.040727 TGTGTCATAAGTATTGCACATCTAAGT 58.959 33.333 0.00 0.00 32.79 2.24
2369 3032 8.424274 TGTGTCATAAGTATTGCACATCTAAG 57.576 34.615 0.00 0.00 32.79 2.18
2370 3033 8.962884 ATGTGTCATAAGTATTGCACATCTAA 57.037 30.769 0.00 0.00 41.81 2.10
2374 3037 8.424133 TCTAGATGTGTCATAAGTATTGCACAT 58.576 33.333 13.21 13.21 46.19 3.21
2375 3038 7.781056 TCTAGATGTGTCATAAGTATTGCACA 58.219 34.615 0.00 0.00 40.42 4.57
2376 3039 8.706936 CATCTAGATGTGTCATAAGTATTGCAC 58.293 37.037 22.42 0.00 34.23 4.57
2377 3040 8.822652 CATCTAGATGTGTCATAAGTATTGCA 57.177 34.615 22.42 0.00 34.23 4.08
2393 3056 9.155975 ACAGTTTTGCTAAAGTACATCTAGATG 57.844 33.333 27.63 27.63 44.15 2.90
2394 3057 9.726438 AACAGTTTTGCTAAAGTACATCTAGAT 57.274 29.630 0.00 0.00 0.00 1.98
2397 3060 9.991906 AGTAACAGTTTTGCTAAAGTACATCTA 57.008 29.630 0.54 0.00 0.00 1.98
2398 3061 8.904099 AGTAACAGTTTTGCTAAAGTACATCT 57.096 30.769 0.54 0.00 0.00 2.90
2408 3071 9.944376 AGATGAGATTAAGTAACAGTTTTGCTA 57.056 29.630 0.00 0.00 0.00 3.49
2409 3072 8.854614 AGATGAGATTAAGTAACAGTTTTGCT 57.145 30.769 0.00 0.00 0.00 3.91
2425 3088 9.863650 ACCTTGATCAATTTGATAGATGAGATT 57.136 29.630 8.96 0.00 37.20 2.40
2434 3097 9.627123 CCCTAGTTTACCTTGATCAATTTGATA 57.373 33.333 8.96 0.00 37.20 2.15
2435 3098 8.116026 ACCCTAGTTTACCTTGATCAATTTGAT 58.884 33.333 11.64 11.64 40.34 2.57
2436 3099 7.466804 ACCCTAGTTTACCTTGATCAATTTGA 58.533 34.615 8.96 0.75 0.00 2.69
2437 3100 7.703058 ACCCTAGTTTACCTTGATCAATTTG 57.297 36.000 8.96 3.54 0.00 2.32
2440 3103 9.220906 TGTATACCCTAGTTTACCTTGATCAAT 57.779 33.333 8.96 0.00 31.53 2.57
2441 3104 8.612486 TGTATACCCTAGTTTACCTTGATCAA 57.388 34.615 8.12 8.12 31.53 2.57
2442 3105 8.612486 TTGTATACCCTAGTTTACCTTGATCA 57.388 34.615 0.00 0.00 31.53 2.92
2453 3116 9.909365 AGGGAATACTATTTGTATACCCTAGTT 57.091 33.333 0.00 0.21 42.58 2.24
2454 3117 9.909365 AAGGGAATACTATTTGTATACCCTAGT 57.091 33.333 0.00 7.25 43.43 2.57
2457 3120 9.010767 ACAAAGGGAATACTATTTGTATACCCT 57.989 33.333 0.00 0.00 42.41 4.34
2458 3121 9.636789 AACAAAGGGAATACTATTTGTATACCC 57.363 33.333 0.00 0.00 43.17 3.69
2473 3136 9.620259 TGCAAAGTAAATAAAAACAAAGGGAAT 57.380 25.926 0.00 0.00 0.00 3.01
2474 3137 9.620259 ATGCAAAGTAAATAAAAACAAAGGGAA 57.380 25.926 0.00 0.00 0.00 3.97
2489 3152 8.458843 GGAGACAAAGCTAATATGCAAAGTAAA 58.541 33.333 0.00 0.00 34.99 2.01
2490 3153 7.609918 TGGAGACAAAGCTAATATGCAAAGTAA 59.390 33.333 0.00 0.00 37.44 2.24
2491 3154 7.109501 TGGAGACAAAGCTAATATGCAAAGTA 58.890 34.615 0.00 0.00 37.44 2.24
2492 3155 5.945784 TGGAGACAAAGCTAATATGCAAAGT 59.054 36.000 0.00 0.00 37.44 2.66
2493 3156 6.094603 ACTGGAGACAAAGCTAATATGCAAAG 59.905 38.462 0.00 0.00 42.06 2.77
2494 3157 5.945784 ACTGGAGACAAAGCTAATATGCAAA 59.054 36.000 0.00 0.00 42.06 3.68
2495 3158 5.500234 ACTGGAGACAAAGCTAATATGCAA 58.500 37.500 0.00 0.00 42.06 4.08
2496 3159 5.102953 ACTGGAGACAAAGCTAATATGCA 57.897 39.130 0.00 0.00 42.06 3.96
2497 3160 5.118990 TGACTGGAGACAAAGCTAATATGC 58.881 41.667 0.00 0.00 42.06 3.14
2498 3161 7.335422 AGTTTGACTGGAGACAAAGCTAATATG 59.665 37.037 4.81 0.00 39.51 1.78
2499 3162 7.398024 AGTTTGACTGGAGACAAAGCTAATAT 58.602 34.615 4.81 0.00 39.51 1.28
2500 3163 6.769512 AGTTTGACTGGAGACAAAGCTAATA 58.230 36.000 4.81 0.00 39.51 0.98
2501 3164 5.625150 AGTTTGACTGGAGACAAAGCTAAT 58.375 37.500 4.81 0.00 39.51 1.73
2502 3165 5.036117 AGTTTGACTGGAGACAAAGCTAA 57.964 39.130 4.81 0.00 39.51 3.09
2503 3166 4.689612 AGTTTGACTGGAGACAAAGCTA 57.310 40.909 4.81 0.00 39.51 3.32
2504 3167 3.567478 AGTTTGACTGGAGACAAAGCT 57.433 42.857 4.81 3.79 39.51 3.74
2505 3168 4.336713 AGAAAGTTTGACTGGAGACAAAGC 59.663 41.667 4.81 1.99 39.51 3.51
2506 3169 7.553881 TTAGAAAGTTTGACTGGAGACAAAG 57.446 36.000 4.81 0.00 39.51 2.77
2507 3170 7.610305 AGTTTAGAAAGTTTGACTGGAGACAAA 59.390 33.333 0.00 0.95 42.06 2.83
2508 3171 7.110155 AGTTTAGAAAGTTTGACTGGAGACAA 58.890 34.615 0.00 0.00 42.06 3.18
2509 3172 6.650120 AGTTTAGAAAGTTTGACTGGAGACA 58.350 36.000 0.00 0.00 39.59 3.41
2510 3173 7.555306 AAGTTTAGAAAGTTTGACTGGAGAC 57.445 36.000 0.00 0.00 0.00 3.36
2532 3195 8.361139 ACGGAAGGAGTATATACTTGATCAAAG 58.639 37.037 16.46 6.49 42.07 2.77
2533 3196 8.246430 ACGGAAGGAGTATATACTTGATCAAA 57.754 34.615 16.46 0.00 36.50 2.69
2534 3197 7.834881 ACGGAAGGAGTATATACTTGATCAA 57.165 36.000 16.46 8.12 36.50 2.57
2535 3198 7.834881 AACGGAAGGAGTATATACTTGATCA 57.165 36.000 16.46 0.00 36.50 2.92
2536 3199 9.543783 AAAAACGGAAGGAGTATATACTTGATC 57.456 33.333 16.46 13.43 36.50 2.92
2548 3211 9.074576 AGACAAATATTTAAAAACGGAAGGAGT 57.925 29.630 0.00 0.00 0.00 3.85
2549 3212 9.908152 AAGACAAATATTTAAAAACGGAAGGAG 57.092 29.630 0.00 0.00 0.00 3.69
2571 3234 9.010366 GTCACTTGTTGAAATGTCTAAAAAGAC 57.990 33.333 0.00 0.00 35.39 3.01
2572 3235 8.956426 AGTCACTTGTTGAAATGTCTAAAAAGA 58.044 29.630 5.49 0.00 35.39 2.52
2574 3237 9.997482 GTAGTCACTTGTTGAAATGTCTAAAAA 57.003 29.630 0.00 0.00 35.39 1.94
2575 3238 9.168451 TGTAGTCACTTGTTGAAATGTCTAAAA 57.832 29.630 0.00 0.00 35.39 1.52
2576 3239 8.725405 TGTAGTCACTTGTTGAAATGTCTAAA 57.275 30.769 0.00 0.00 35.39 1.85
2577 3240 8.902540 ATGTAGTCACTTGTTGAAATGTCTAA 57.097 30.769 0.00 0.00 35.39 2.10
2578 3241 9.419297 GTATGTAGTCACTTGTTGAAATGTCTA 57.581 33.333 0.00 0.00 35.39 2.59
2579 3242 7.931407 TGTATGTAGTCACTTGTTGAAATGTCT 59.069 33.333 0.00 0.00 35.39 3.41
2580 3243 8.083462 TGTATGTAGTCACTTGTTGAAATGTC 57.917 34.615 0.00 0.00 35.39 3.06
2581 3244 8.445275 TTGTATGTAGTCACTTGTTGAAATGT 57.555 30.769 0.00 0.00 35.39 2.71
2582 3245 9.385902 CTTTGTATGTAGTCACTTGTTGAAATG 57.614 33.333 0.00 0.00 35.39 2.32
2583 3246 8.076178 GCTTTGTATGTAGTCACTTGTTGAAAT 58.924 33.333 0.00 0.00 35.39 2.17
2584 3247 7.066404 TGCTTTGTATGTAGTCACTTGTTGAAA 59.934 33.333 0.00 0.00 35.39 2.69
2585 3248 6.540551 TGCTTTGTATGTAGTCACTTGTTGAA 59.459 34.615 0.00 0.00 35.39 2.69
2586 3249 6.052360 TGCTTTGTATGTAGTCACTTGTTGA 58.948 36.000 0.00 0.00 0.00 3.18
2587 3250 6.299023 TGCTTTGTATGTAGTCACTTGTTG 57.701 37.500 0.00 0.00 0.00 3.33
2588 3251 6.935741 TTGCTTTGTATGTAGTCACTTGTT 57.064 33.333 0.00 0.00 0.00 2.83
2589 3252 6.935741 TTTGCTTTGTATGTAGTCACTTGT 57.064 33.333 0.00 0.00 0.00 3.16
2590 3253 8.075574 TCATTTTGCTTTGTATGTAGTCACTTG 58.924 33.333 0.00 0.00 0.00 3.16
2591 3254 8.165239 TCATTTTGCTTTGTATGTAGTCACTT 57.835 30.769 0.00 0.00 0.00 3.16
2592 3255 7.445402 ACTCATTTTGCTTTGTATGTAGTCACT 59.555 33.333 0.00 0.00 0.00 3.41
2593 3256 7.535258 CACTCATTTTGCTTTGTATGTAGTCAC 59.465 37.037 0.00 0.00 0.00 3.67
2594 3257 7.443879 TCACTCATTTTGCTTTGTATGTAGTCA 59.556 33.333 0.00 0.00 0.00 3.41
2595 3258 7.806690 TCACTCATTTTGCTTTGTATGTAGTC 58.193 34.615 0.00 0.00 0.00 2.59
2596 3259 7.744087 TCACTCATTTTGCTTTGTATGTAGT 57.256 32.000 0.00 0.00 0.00 2.73
2597 3260 9.282247 GATTCACTCATTTTGCTTTGTATGTAG 57.718 33.333 0.00 0.00 0.00 2.74
2598 3261 9.013229 AGATTCACTCATTTTGCTTTGTATGTA 57.987 29.630 0.00 0.00 0.00 2.29
2599 3262 7.889469 AGATTCACTCATTTTGCTTTGTATGT 58.111 30.769 0.00 0.00 0.00 2.29
2600 3263 9.282247 GTAGATTCACTCATTTTGCTTTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
2601 3264 9.013229 TGTAGATTCACTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
2602 3265 8.289618 GTGTAGATTCACTCATTTTGCTTTGTA 58.710 33.333 0.00 0.00 35.68 2.41
2603 3266 7.013655 AGTGTAGATTCACTCATTTTGCTTTGT 59.986 33.333 0.00 0.00 44.07 2.83
2604 3267 7.365741 AGTGTAGATTCACTCATTTTGCTTTG 58.634 34.615 0.00 0.00 44.07 2.77
2605 3268 7.516198 AGTGTAGATTCACTCATTTTGCTTT 57.484 32.000 0.00 0.00 44.07 3.51
2627 3290 9.261180 CGGATGTATGTAGACATATTTTTGAGT 57.739 33.333 5.69 0.00 40.18 3.41
2628 3291 9.261180 ACGGATGTATGTAGACATATTTTTGAG 57.739 33.333 5.69 0.00 40.18 3.02
2645 3308 7.771361 TCAAATGGTTACAACATACGGATGTAT 59.229 33.333 15.10 8.21 45.93 2.29
2646 3309 7.104290 TCAAATGGTTACAACATACGGATGTA 58.896 34.615 15.10 0.00 45.93 2.29
2648 3311 6.429791 TCAAATGGTTACAACATACGGATG 57.570 37.500 5.94 5.94 39.16 3.51
2649 3312 7.455641 TTTCAAATGGTTACAACATACGGAT 57.544 32.000 0.00 0.00 0.00 4.18
2650 3313 6.879276 TTTCAAATGGTTACAACATACGGA 57.121 33.333 0.00 0.00 0.00 4.69
2651 3314 7.087639 ACATTTCAAATGGTTACAACATACGG 58.912 34.615 14.70 0.00 0.00 4.02
2652 3315 8.020819 AGACATTTCAAATGGTTACAACATACG 58.979 33.333 14.70 0.00 0.00 3.06
2655 3318 9.295825 TCTAGACATTTCAAATGGTTACAACAT 57.704 29.630 14.70 0.00 0.00 2.71
2656 3319 8.684386 TCTAGACATTTCAAATGGTTACAACA 57.316 30.769 14.70 0.00 0.00 3.33
2657 3320 9.959749 TTTCTAGACATTTCAAATGGTTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
2659 3322 9.567776 TCTTTCTAGACATTTCAAATGGTTACA 57.432 29.630 14.70 0.00 0.00 2.41
2679 3342 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
2680 3343 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
2681 3344 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2682 3345 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2683 3346 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
2684 3347 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2685 3348 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2686 3349 7.985752 ACTACTCCCTCCGTTTCTAAATATTTG 59.014 37.037 11.05 1.65 0.00 2.32
2687 3350 8.087303 ACTACTCCCTCCGTTTCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
2688 3351 7.672122 ACTACTCCCTCCGTTTCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
2689 3352 7.781693 TGTACTACTCCCTCCGTTTCTAAATAT 59.218 37.037 0.00 0.00 0.00 1.28
2690 3353 7.118723 TGTACTACTCCCTCCGTTTCTAAATA 58.881 38.462 0.00 0.00 0.00 1.40
2691 3354 5.954150 TGTACTACTCCCTCCGTTTCTAAAT 59.046 40.000 0.00 0.00 0.00 1.40
2692 3355 5.324409 TGTACTACTCCCTCCGTTTCTAAA 58.676 41.667 0.00 0.00 0.00 1.85
2693 3356 4.922206 TGTACTACTCCCTCCGTTTCTAA 58.078 43.478 0.00 0.00 0.00 2.10
2694 3357 4.574674 TGTACTACTCCCTCCGTTTCTA 57.425 45.455 0.00 0.00 0.00 2.10
2695 3358 3.446442 TGTACTACTCCCTCCGTTTCT 57.554 47.619 0.00 0.00 0.00 2.52
2696 3359 4.525912 TTTGTACTACTCCCTCCGTTTC 57.474 45.455 0.00 0.00 0.00 2.78
2697 3360 4.961438 TTTTGTACTACTCCCTCCGTTT 57.039 40.909 0.00 0.00 0.00 3.60
2698 3361 4.346127 ACTTTTTGTACTACTCCCTCCGTT 59.654 41.667 0.00 0.00 0.00 4.44
2699 3362 3.899980 ACTTTTTGTACTACTCCCTCCGT 59.100 43.478 0.00 0.00 0.00 4.69
2700 3363 4.532314 ACTTTTTGTACTACTCCCTCCG 57.468 45.455 0.00 0.00 0.00 4.63
2701 3364 6.967135 CAAAACTTTTTGTACTACTCCCTCC 58.033 40.000 6.32 0.00 41.87 4.30
2732 3395 9.859152 TGACATTGATTTGGTATATATTGTGGA 57.141 29.630 0.00 0.00 0.00 4.02
2741 3404 9.418839 TGATTCCAATGACATTGATTTGGTATA 57.581 29.630 26.36 5.03 42.83 1.47
2742 3405 8.308851 TGATTCCAATGACATTGATTTGGTAT 57.691 30.769 26.36 12.07 42.83 2.73
2743 3406 7.715266 TGATTCCAATGACATTGATTTGGTA 57.285 32.000 26.36 7.96 42.83 3.25
2744 3407 6.608539 TGATTCCAATGACATTGATTTGGT 57.391 33.333 26.36 8.47 42.83 3.67
2745 3408 7.269316 TGATGATTCCAATGACATTGATTTGG 58.731 34.615 26.36 13.19 42.83 3.28
2746 3409 8.887036 ATGATGATTCCAATGACATTGATTTG 57.113 30.769 26.36 11.77 42.83 2.32
2747 3410 9.542462 GAATGATGATTCCAATGACATTGATTT 57.458 29.630 26.36 11.88 42.83 2.17
2748 3411 8.700973 TGAATGATGATTCCAATGACATTGATT 58.299 29.630 26.36 15.78 38.15 2.57
2749 3412 8.245195 TGAATGATGATTCCAATGACATTGAT 57.755 30.769 26.36 14.48 38.15 2.57
2750 3413 7.648039 TGAATGATGATTCCAATGACATTGA 57.352 32.000 26.36 10.43 38.15 2.57
2751 3414 8.887036 ATTGAATGATGATTCCAATGACATTG 57.113 30.769 19.42 19.42 37.74 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.