AutoCloner

Multiple sequence alignment - TraesCS5A01G028600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G028600	chr5A	100.000	1528	0	0	941	2468	24184969	24186496	0.000000e+00	2822.0
1	TraesCS5A01G028600	chr5A	100.000	529	0	0	1	529	24184029	24184557	0.000000e+00	977.0
2	TraesCS5A01G028600	chr5A	85.263	570	44	22	990	1529	23919253	23918694	3.590000e-153	551.0
3	TraesCS5A01G028600	chr5A	83.855	607	56	22	947	1531	24149814	24149228	7.760000e-150	540.0
4	TraesCS5A01G028600	chr5A	88.514	296	20	5	41	335	23921135	23920853	1.820000e-91	346.0
5	TraesCS5A01G028600	chr5A	80.208	480	67	17	62	529	24150322	24149859	3.930000e-88	335.0
6	TraesCS5A01G028600	chr5A	89.100	211	14	3	1563	1768	23942200	23942406	1.130000e-63	254.0
7	TraesCS5A01G028600	chr5A	77.427	412	51	18	123	529	23941565	23941939	8.950000e-50	207.0
8	TraesCS5A01G028600	chr5A	93.103	87	6	0	1684	1770	23918648	23918562	7.160000e-26	128.0
9	TraesCS5A01G028600	chr5B	88.966	861	61	17	1619	2468	26608969	26608132	0.000000e+00	1033.0
10	TraesCS5A01G028600	chr5B	93.047	489	27	4	41	524	26610813	26610327	0.000000e+00	708.0
11	TraesCS5A01G028600	chr5B	87.766	564	43	15	1029	1574	26609999	26609444	9.630000e-179	636.0
12	TraesCS5A01G028600	chr5D	85.082	791	59	26	941	1703	35553604	35554363	0.000000e+00	752.0
13	TraesCS5A01G028600	chr5D	85.045	662	54	22	941	1575	35286434	35285791	1.250000e-177	632.0
14	TraesCS5A01G028600	chr5D	85.430	604	52	17	947	1531	35499892	35499306	1.630000e-166	595.0
15	TraesCS5A01G028600	chr5D	93.353	331	15	3	200	529	35553235	35553559	1.330000e-132	483.0
16	TraesCS5A01G028600	chr5D	84.884	430	55	8	1932	2355	35347672	35348097	2.270000e-115	425.0
17	TraesCS5A01G028600	chr5D	83.668	398	44	13	140	529	35286857	35286473	3.020000e-94	355.0
18	TraesCS5A01G028600	chr5D	91.975	162	11	2	41	202	35552643	35552802	2.470000e-55	226.0
19	TraesCS5A01G028600	chr5D	81.304	230	25	9	305	529	35329673	35329889	1.170000e-38	171.0
20	TraesCS5A01G028600	chr5D	97.674	43	1	0	1	43	44506061	44506019	9.470000e-10	75.0
21	TraesCS5A01G028600	chrUn	84.369	563	54	20	990	1531	266219796	266219247	2.810000e-144	521.0
22	TraesCS5A01G028600	chrUn	84.369	563	54	20	990	1531	266246591	266246042	2.810000e-144	521.0
23	TraesCS5A01G028600	chrUn	83.030	495	50	14	41	524	268031252	268031723	3.800000e-113	418.0
24	TraesCS5A01G028600	chrUn	83.030	495	50	14	41	524	324441207	324440736	3.800000e-113	418.0
25	TraesCS5A01G028600	chrUn	83.902	410	34	15	947	1333	440671213	440670813	1.800000e-96	363.0
26	TraesCS5A01G028600	chrUn	82.968	411	50	12	123	524	266220284	266219885	1.090000e-93	353.0
27	TraesCS5A01G028600	chrUn	82.968	411	50	12	123	524	266247079	266246680	1.090000e-93	353.0
28	TraesCS5A01G028600	chrUn	81.092	476	59	13	62	529	268030745	268031197	3.900000e-93	351.0
29	TraesCS5A01G028600	chrUn	90.265	113	8	2	1658	1768	296736364	296736475	7.110000e-31	145.0
30	TraesCS5A01G028600	chrUn	90.265	113	8	2	1658	1768	307809036	307808925	7.110000e-31	145.0
31	TraesCS5A01G028600	chr7B	95.946	296	10	2	230	524	205198304	205198010	1.720000e-131	479.0
32	TraesCS5A01G028600	chr7B	97.619	42	1	0	2	43	34420821	34420780	3.400000e-09	73.1
33	TraesCS5A01G028600	chr7A	86.411	287	24	6	1099	1373	3945516	3945799	1.430000e-77	300.0
34	TraesCS5A01G028600	chr2A	85.211	284	27	6	1099	1370	734773572	734773852	6.720000e-71	278.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G028600	chr5A	24184029	24186496	2467	False	1899.500000	2822	100.000000	1	2468	2	chr5A.!!$F2	2467
1	TraesCS5A01G028600	chr5A	24149228	24150322	1094	True	437.500000	540	82.031500	62	1531	2	chr5A.!!$R2	1469
2	TraesCS5A01G028600	chr5A	23918562	23921135	2573	True	341.666667	551	88.960000	41	1770	3	chr5A.!!$R1	1729
3	TraesCS5A01G028600	chr5A	23941565	23942406	841	False	230.500000	254	83.263500	123	1768	2	chr5A.!!$F1	1645
4	TraesCS5A01G028600	chr5B	26608132	26610813	2681	True	792.333333	1033	89.926333	41	2468	3	chr5B.!!$R1	2427
5	TraesCS5A01G028600	chr5D	35499306	35499892	586	True	595.000000	595	85.430000	947	1531	1	chr5D.!!$R1	584
6	TraesCS5A01G028600	chr5D	35285791	35286857	1066	True	493.500000	632	84.356500	140	1575	2	chr5D.!!$R3	1435
7	TraesCS5A01G028600	chr5D	35552643	35554363	1720	False	487.000000	752	90.136667	41	1703	3	chr5D.!!$F3	1662
8	TraesCS5A01G028600	chrUn	266219247	266220284	1037	True	437.000000	521	83.668500	123	1531	2	chrUn.!!$R4	1408
9	TraesCS5A01G028600	chrUn	266246042	266247079	1037	True	437.000000	521	83.668500	123	1531	2	chrUn.!!$R5	1408
10	TraesCS5A01G028600	chrUn	268030745	268031723	978	False	384.500000	418	82.061000	41	529	2	chrUn.!!$F2	488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
36	37	0.239879	AAGCACCCGCGTTGTAAATG	59.76	50.0	4.92	0.0	45.49	2.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1774	4503	0.584396	CCGCACAAGCTTTTGACGTA	59.416	50.0	16.7	0.0	39.1	3.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	3.241530	CCCTAGCGCCCCATGCTA	61.242	66.667	2.29	0.00	43.71	3.49
18	19	2.818169	CCCTAGCGCCCCATGCTAA	61.818	63.158	2.29	0.00	43.82	3.09
19	20	1.302033	CCTAGCGCCCCATGCTAAG	60.302	63.158	2.29	0.00	43.82	2.18
20	21	1.963338	CTAGCGCCCCATGCTAAGC	60.963	63.158	2.29	0.00	43.82	3.09
22	23	2.940890	TAGCGCCCCATGCTAAGCAC	62.941	60.000	2.29	0.00	43.04	4.40
23	24	3.211963	CGCCCCATGCTAAGCACC	61.212	66.667	0.00	0.00	43.04	5.01
24	25	2.834968	GCCCCATGCTAAGCACCC	60.835	66.667	0.00	0.00	43.04	4.61
25	26	2.516930	CCCCATGCTAAGCACCCG	60.517	66.667	0.00	0.00	43.04	5.28
26	27	3.211963	CCCATGCTAAGCACCCGC	61.212	66.667	0.00	0.00	43.04	6.13
27	28	3.576356	CCATGCTAAGCACCCGCG	61.576	66.667	0.00	0.00	43.04	6.46
28	29	2.819595	CATGCTAAGCACCCGCGT	60.820	61.111	4.92	0.00	43.04	6.01
30	31	2.398554	ATGCTAAGCACCCGCGTTG	61.399	57.895	4.92	2.47	43.04	4.10
33	34	1.293267	GCTAAGCACCCGCGTTGTAA	61.293	55.000	4.92	0.00	45.49	2.41
34	35	1.149987	CTAAGCACCCGCGTTGTAAA	58.850	50.000	4.92	0.00	45.49	2.01
35	36	1.735571	CTAAGCACCCGCGTTGTAAAT	59.264	47.619	4.92	0.00	45.49	1.40
36	37	0.239879	AAGCACCCGCGTTGTAAATG	59.760	50.000	4.92	0.00	45.49	2.32
64	533	2.620251	TTGCATCCCTAATCCTGTCG	57.380	50.000	0.00	0.00	0.00	4.35
145	616	8.784994	ACAAATCAATTAAAATGCATGCTTCAA	58.215	25.926	20.33	8.25	0.00	2.69
191	664	7.875041	AGCATCATGTTCCTACATCATTACTAC	59.125	37.037	0.00	0.00	43.07	2.73
302	1216	3.993920	ACTGGTTAAAATTTGCAGGCTG	58.006	40.909	10.94	10.94	0.00	4.85
312	1226	3.883830	TTTGCAGGCTGTTTTTCTCAA	57.116	38.095	17.16	6.86	0.00	3.02
524	2756	1.414181	ACGGCGGAGATTTGATCTGAT	59.586	47.619	13.24	0.00	40.38	2.90
987	3227	2.555123	GTCCCTGTGACGTACGGTA	58.445	57.895	21.06	4.81	33.49	4.02
1224	3488	0.249615	CGTCGTCCATCCAGCATCAT	60.250	55.000	0.00	0.00	0.00	2.45
1225	3489	1.506493	GTCGTCCATCCAGCATCATC	58.494	55.000	0.00	0.00	0.00	2.92
1226	3490	1.122227	TCGTCCATCCAGCATCATCA	58.878	50.000	0.00	0.00	0.00	3.07
1442	3724	3.925238	GGCGCATGCTAACCGTCG	61.925	66.667	17.13	0.00	42.25	5.12
1443	3725	3.186047	GCGCATGCTAACCGTCGT	61.186	61.111	17.13	0.00	38.39	4.34
1444	3726	2.995482	CGCATGCTAACCGTCGTC	59.005	61.111	17.13	0.00	0.00	4.20
1445	3727	1.803922	CGCATGCTAACCGTCGTCA	60.804	57.895	17.13	0.00	0.00	4.35
1446	3728	1.742900	CGCATGCTAACCGTCGTCAG	61.743	60.000	17.13	0.00	0.00	3.51
1447	3729	0.457853	GCATGCTAACCGTCGTCAGA	60.458	55.000	11.37	0.00	0.00	3.27
1448	3730	1.550065	CATGCTAACCGTCGTCAGAG	58.450	55.000	0.00	0.00	0.00	3.35
1450	3732	1.868251	GCTAACCGTCGTCAGAGCG	60.868	63.158	0.00	0.00	0.00	5.03
1451	3733	1.500844	CTAACCGTCGTCAGAGCGT	59.499	57.895	0.00	0.00	0.00	5.07
1476	3759	1.589196	GCCGATGTAGCCTGTCGAC	60.589	63.158	9.11	9.11	37.55	4.20
1531	3818	2.034179	TGTATCGTACTCAATGCCTCGG	59.966	50.000	0.00	0.00	0.00	4.63
1600	4010	4.530857	AGCCGCCATCTACGTGCC	62.531	66.667	0.00	0.00	0.00	5.01
1642	4366	2.092538	AGCTAAGCTAGGTAGGTCGTCA	60.093	50.000	0.00	0.00	36.99	4.35
1772	4501	5.344743	CAAGCTATCAGAGTTTGGTAGGA	57.655	43.478	3.33	0.00	41.40	2.94
1773	4502	5.355596	CAAGCTATCAGAGTTTGGTAGGAG	58.644	45.833	3.33	0.00	41.40	3.69
1774	4503	4.615513	AGCTATCAGAGTTTGGTAGGAGT	58.384	43.478	3.33	0.00	40.29	3.85
1788	4517	3.678548	GGTAGGAGTACGTCAAAAGCTTG	59.321	47.826	0.00	0.00	0.00	4.01
1827	4556	3.703001	ACCCAGTCCAGAAATGTACTG	57.297	47.619	0.00	0.00	39.22	2.74
1848	4577	5.160607	TGGACTAACAAGGGAATGTACAG	57.839	43.478	0.33	0.00	32.02	2.74
1863	4592	8.745590	GGGAATGTACAGTGGTGTTATTTTATT	58.254	33.333	0.00	0.00	38.19	1.40
1868	4597	8.723311	TGTACAGTGGTGTTATTTTATTAGTGC	58.277	33.333	0.00	0.00	38.19	4.40
1873	4602	8.085909	AGTGGTGTTATTTTATTAGTGCCAAAC	58.914	33.333	0.00	0.00	0.00	2.93
1877	4606	9.685828	GTGTTATTTTATTAGTGCCAAACAGAA	57.314	29.630	0.00	0.00	0.00	3.02
1910	4639	1.816224	TCGGCAGGCAAAAGATTAACC	59.184	47.619	0.00	0.00	0.00	2.85
1911	4640	1.818674	CGGCAGGCAAAAGATTAACCT	59.181	47.619	0.00	0.00	0.00	3.50
1919	4648	6.039829	CAGGCAAAAGATTAACCTAGGGAATC	59.960	42.308	22.41	22.41	0.00	2.52
1963	4692	5.245531	AGTGCCGAATAGAATTGTCAGAAA	58.754	37.500	0.00	0.00	0.00	2.52
2139	4869	9.703892	AGATAAGACTGCATTATCAATCACTAC	57.296	33.333	16.88	0.00	40.55	2.73
2207	4942	2.912986	CCGAATTAGCGGCATAGCA	58.087	52.632	1.45	0.00	45.38	3.49
2244	4979	1.304282	CCCTGCATACACTTGGGCT	59.696	57.895	0.00	0.00	0.00	5.19
2249	4984	1.304282	CATACACTTGGGCTGGCCT	59.696	57.895	21.72	2.84	36.10	5.19
2261	4996	1.560146	GGCTGGCCTAACTAGGTTCTT	59.440	52.381	3.32	0.00	45.42	2.52
2275	5010	2.438392	AGGTTCTTCCGGTTATGGGATC	59.562	50.000	0.00	0.00	41.99	3.36
2293	5029	0.040646	TCGGCTCTAGAACCTTCCCA	59.959	55.000	10.43	0.00	0.00	4.37
2296	5032	2.092914	CGGCTCTAGAACCTTCCCAAAT	60.093	50.000	10.43	0.00	0.00	2.32
2297	5033	3.282885	GGCTCTAGAACCTTCCCAAATG	58.717	50.000	4.84	0.00	0.00	2.32
2345	5081	9.778741	ACTTTTGTTTTTCTTCTTCCTTTTCTT	57.221	25.926	0.00	0.00	0.00	2.52
2350	5086	9.996554	TGTTTTTCTTCTTCCTTTTCTTTTCTT	57.003	25.926	0.00	0.00	0.00	2.52
2409	5146	9.834628	TCGTACATCTTTCCAATTTGTATTTTC	57.165	29.630	0.00	0.00	0.00	2.29
2410	5147	9.619316	CGTACATCTTTCCAATTTGTATTTTCA	57.381	29.630	0.00	0.00	0.00	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	2.834968	GGGTGCTTAGCATGGGGC	60.835	66.667	11.03	0.00	41.91	5.80
8	9	2.516930	CGGGTGCTTAGCATGGGG	60.517	66.667	11.03	0.00	41.91	4.96
9	10	3.211963	GCGGGTGCTTAGCATGGG	61.212	66.667	11.03	3.58	41.91	4.00
10	11	3.576356	CGCGGGTGCTTAGCATGG	61.576	66.667	11.03	3.96	41.91	3.66
11	12	2.398554	AACGCGGGTGCTTAGCATG	61.399	57.895	11.03	4.93	41.91	4.06
12	13	2.046314	AACGCGGGTGCTTAGCAT	60.046	55.556	11.03	0.00	41.91	3.79
13	14	2.437518	TACAACGCGGGTGCTTAGCA	62.438	55.000	12.47	1.39	39.65	3.49
14	15	1.293267	TTACAACGCGGGTGCTTAGC	61.293	55.000	12.47	0.00	39.65	3.09
15	16	1.149987	TTTACAACGCGGGTGCTTAG	58.850	50.000	12.47	0.00	39.65	2.18
16	17	1.465387	CATTTACAACGCGGGTGCTTA	59.535	47.619	12.47	0.00	39.65	3.09
17	18	0.239879	CATTTACAACGCGGGTGCTT	59.760	50.000	12.47	0.00	39.65	3.91
18	19	1.873165	CATTTACAACGCGGGTGCT	59.127	52.632	12.47	0.00	39.65	4.40
19	20	1.799916	GCATTTACAACGCGGGTGC	60.800	57.895	12.47	5.96	37.91	5.01
20	21	1.154112	GGCATTTACAACGCGGGTG	60.154	57.895	12.47	11.11	0.00	4.61
22	23	0.745128	TAGGGCATTTACAACGCGGG	60.745	55.000	12.47	4.46	0.00	6.13
23	24	1.088306	TTAGGGCATTTACAACGCGG	58.912	50.000	12.47	0.00	0.00	6.46
24	25	1.465387	TGTTAGGGCATTTACAACGCG	59.535	47.619	3.53	3.53	0.00	6.01
25	26	3.775661	ATGTTAGGGCATTTACAACGC	57.224	42.857	0.00	0.00	0.00	4.84
26	27	3.857093	GCAATGTTAGGGCATTTACAACG	59.143	43.478	0.00	0.00	37.00	4.10
27	28	4.815269	TGCAATGTTAGGGCATTTACAAC	58.185	39.130	0.00	0.00	37.00	3.32
28	29	5.674052	ATGCAATGTTAGGGCATTTACAA	57.326	34.783	0.00	0.00	45.34	2.41
35	36	0.630673	AGGGATGCAATGTTAGGGCA	59.369	50.000	0.00	0.00	42.43	5.36
36	37	2.656947	TAGGGATGCAATGTTAGGGC	57.343	50.000	0.00	0.00	0.00	5.19
37	38	4.082125	GGATTAGGGATGCAATGTTAGGG	58.918	47.826	0.00	0.00	0.00	3.53
39	40	5.380043	ACAGGATTAGGGATGCAATGTTAG	58.620	41.667	0.00	0.00	0.00	2.34
43	44	2.810274	CGACAGGATTAGGGATGCAATG	59.190	50.000	0.00	0.00	0.00	2.82
64	533	5.888105	AGATATTTGACTGCAGTTTGATGC	58.112	37.500	22.65	7.46	46.68	3.91
128	598	5.119931	AGACGTTGAAGCATGCATTTTAA	57.880	34.783	21.98	6.63	0.00	1.52
145	616	4.142315	TGCTAAAGTAGGCGATTAAGACGT	60.142	41.667	0.00	0.00	0.00	4.34
197	670	7.973944	TGTGTGTGTGCTGATAGTATAGTAAAG	59.026	37.037	0.00	0.00	0.00	1.85
302	1216	9.771915	TTTTGCTTTGATTTGATTGAGAAAAAC	57.228	25.926	0.00	0.00	0.00	2.43
399	2616	1.017177	GCGTGCACGATTCCCTGTTA	61.017	55.000	41.19	0.00	43.02	2.41
430	2647	8.576442	ACTTTTACCTTTTCCTGTCAACATATG	58.424	33.333	0.00	0.00	0.00	1.78
987	3227	2.224606	CTTGACATGGTTGCAGACTGT	58.775	47.619	3.99	0.00	0.00	3.55
1119	3362	2.761195	CCCGAGCTCGATGTCGACA	61.761	63.158	36.59	22.48	44.22	4.35
1155	3407	4.821589	GCCTCGTCGAGCCCCAAG	62.822	72.222	17.02	3.25	0.00	3.61
1241	3511	1.927608	CTCCTTCGCAGTCTGCTCGA	61.928	60.000	22.13	10.52	42.25	4.04
1242	3512	1.515952	CTCCTTCGCAGTCTGCTCG	60.516	63.158	22.13	8.25	42.25	5.03
1247	3526	2.705821	CGCTCCTCCTTCGCAGTCT	61.706	63.158	0.00	0.00	0.00	3.24
1347	3629	4.640855	CACTGGTCGACGCACCGT	62.641	66.667	9.92	1.76	45.10	4.83
1442	3724	3.474034	GCACGCTGACGCTCTGAC	61.474	66.667	0.00	0.00	45.53	3.51
1443	3725	4.724602	GGCACGCTGACGCTCTGA	62.725	66.667	0.00	0.00	45.53	3.27
1513	3800	1.067212	GTCCGAGGCATTGAGTACGAT	59.933	52.381	0.00	0.00	0.00	3.73
1531	3818	1.950909	TGGTCACCAAATTGTTCCGTC	59.049	47.619	0.00	0.00	0.00	4.79
1600	4010	5.638657	AGCTACGTACTCTATACATCTTCCG	59.361	44.000	0.00	0.00	0.00	4.30
1642	4366	0.750249	CACATCACATGGCCATGCAT	59.250	50.000	39.74	29.53	42.39	3.96
1750	4479	5.105146	ACTCCTACCAAACTCTGATAGCTTG	60.105	44.000	0.00	0.00	32.12	4.01
1770	4499	2.349532	GCACAAGCTTTTGACGTACTCC	60.350	50.000	16.70	0.00	37.91	3.85
1771	4500	2.659291	CGCACAAGCTTTTGACGTACTC	60.659	50.000	16.70	0.00	39.10	2.59
1772	4501	1.260561	CGCACAAGCTTTTGACGTACT	59.739	47.619	16.70	0.00	39.10	2.73
1773	4502	1.658968	CGCACAAGCTTTTGACGTAC	58.341	50.000	16.70	0.00	39.10	3.67
1774	4503	0.584396	CCGCACAAGCTTTTGACGTA	59.416	50.000	16.70	0.00	39.10	3.57
1788	4517	0.950071	TTGCTAACCGGTAACCGCAC	60.950	55.000	8.00	0.00	46.86	5.34
1827	4556	4.935808	CACTGTACATTCCCTTGTTAGTCC	59.064	45.833	0.00	0.00	0.00	3.85
1834	4563	3.140325	ACACCACTGTACATTCCCTTG	57.860	47.619	0.00	0.00	0.00	3.61
1835	4564	3.876309	AACACCACTGTACATTCCCTT	57.124	42.857	0.00	0.00	0.00	3.95
1836	4565	5.514500	AATAACACCACTGTACATTCCCT	57.486	39.130	0.00	0.00	0.00	4.20
1848	4577	7.868415	TGTTTGGCACTAATAAAATAACACCAC	59.132	33.333	0.00	0.00	0.00	4.16
1863	4592	2.026262	GGGAGGATTCTGTTTGGCACTA	60.026	50.000	0.00	0.00	0.00	2.74
1868	4597	1.279271	AGTCGGGAGGATTCTGTTTGG	59.721	52.381	0.00	0.00	0.00	3.28
1873	4602	0.665835	CGAGAGTCGGGAGGATTCTG	59.334	60.000	0.00	0.00	41.35	3.02
2082	4812	4.611807	GCCACGTAATCTAGAGAGACGATG	60.612	50.000	23.10	17.61	38.71	3.84
2083	4813	3.499157	GCCACGTAATCTAGAGAGACGAT	59.501	47.826	23.10	10.19	38.71	3.73
2085	4815	2.348685	CGCCACGTAATCTAGAGAGACG	60.349	54.545	17.53	17.53	40.79	4.18
2124	4854	6.662414	ACGGTTGTGTAGTGATTGATAATG	57.338	37.500	0.00	0.00	0.00	1.90
2172	4907	1.067846	TCGGACGAATCACAACAGGAG	60.068	52.381	0.00	0.00	0.00	3.69
2175	4910	4.492570	GCTAATTCGGACGAATCACAACAG	60.493	45.833	18.83	10.82	43.26	3.16
2202	4937	0.032416	ACCGGGTGTCTAGGTGCTAT	60.032	55.000	6.32	0.00	36.81	2.97
2205	4940	2.577593	GACCGGGTGTCTAGGTGC	59.422	66.667	3.30	0.00	41.03	5.01
2206	4941	2.707849	CGGACCGGGTGTCTAGGTG	61.708	68.421	3.30	0.00	43.89	4.00
2207	4942	2.362120	CGGACCGGGTGTCTAGGT	60.362	66.667	3.30	0.00	43.89	3.08
2224	4959	1.754234	CCCAAGTGTATGCAGGGGC	60.754	63.158	0.00	0.00	41.68	5.80
2226	4961	1.033746	CAGCCCAAGTGTATGCAGGG	61.034	60.000	2.59	2.59	42.55	4.45
2227	4962	1.033746	CCAGCCCAAGTGTATGCAGG	61.034	60.000	0.00	0.00	0.00	4.85
2231	4966	0.546122	TAGGCCAGCCCAAGTGTATG	59.454	55.000	5.01	0.00	36.58	2.39
2249	4984	4.406649	CCCATAACCGGAAGAACCTAGTTA	59.593	45.833	9.46	0.00	38.48	2.24
2261	4996	1.458777	AGCCGATCCCATAACCGGA	60.459	57.895	9.46	0.00	44.29	5.14
2275	5010	0.902531	TTGGGAAGGTTCTAGAGCCG	59.097	55.000	18.79	0.00	36.74	5.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.