AutoCloner

Multiple sequence alignment - TraesCS5A01G028500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G028500	chr5A	100.000	2483	0	0	1	2483	24183668	24181186	0.000000e+00	4586.0
1	TraesCS5A01G028500	chr5A	86.174	745	46	19	848	1561	23933654	23934372	0.000000e+00	752.0
2	TraesCS5A01G028500	chr5A	80.050	802	94	48	671	1440	24161015	24161782	3.630000e-148	534.0
3	TraesCS5A01G028500	chr5A	77.630	751	85	50	714	1443	23938950	23938262	1.800000e-101	379.0
4	TraesCS5A01G028500	chr5A	79.582	431	62	22	1020	1440	23915563	23915149	4.040000e-73	285.0
5	TraesCS5A01G028500	chr5A	94.872	117	6	0	1623	1739	23934407	23934523	1.520000e-42	183.0
6	TraesCS5A01G028500	chr5A	83.544	158	19	5	714	869	24176901	24177053	9.260000e-30	141.0
7	TraesCS5A01G028500	chr5A	91.837	98	3	2	764	858	23928206	23928301	5.570000e-27	132.0
8	TraesCS5A01G028500	chr5A	77.419	217	43	2	1009	1219	25076056	25075840	9.320000e-25	124.0
9	TraesCS5A01G028500	chr5A	84.615	117	14	4	1862	1977	304101297	304101410	2.020000e-21	113.0
10	TraesCS5A01G028500	chr5A	92.308	39	3	0	1900	1938	158950606	158950568	3.450000e-04	56.5
11	TraesCS5A01G028500	chr5D	85.241	1267	67	34	560	1743	35551849	35550620	0.000000e+00	1194.0
12	TraesCS5A01G028500	chr5D	85.215	1001	75	35	751	1700	35304972	35305950	0.000000e+00	961.0
13	TraesCS5A01G028500	chr5D	88.321	685	53	15	1803	2479	35547504	35546839	0.000000e+00	797.0
14	TraesCS5A01G028500	chr5D	85.914	717	46	25	643	1326	35293940	35294634	0.000000e+00	713.0
15	TraesCS5A01G028500	chr5D	80.737	706	80	39	764	1440	35531442	35532120	1.330000e-137	499.0
16	TraesCS5A01G028500	chr5D	92.593	297	17	4	357	649	35293605	35293900	2.950000e-114	422.0
17	TraesCS5A01G028500	chr5D	88.889	198	19	3	1328	1524	35302538	35302733	8.870000e-60	241.0
18	TraesCS5A01G028500	chr5D	89.831	59	5	1	1	58	35552104	35552046	9.520000e-10	75.0
19	TraesCS5A01G028500	chrUn	81.665	889	84	40	798	1654	298147289	298146448	0.000000e+00	665.0
20	TraesCS5A01G028500	chrUn	89.231	520	34	7	444	955	264393665	264393160	4.510000e-177	630.0
21	TraesCS5A01G028500	chrUn	88.800	500	41	10	951	1446	340491815	340491327	1.270000e-167	599.0
22	TraesCS5A01G028500	chrUn	86.379	580	39	17	980	1543	340388875	340388320	4.570000e-167	597.0
23	TraesCS5A01G028500	chrUn	78.062	743	103	41	706	1421	288041230	288040521	4.940000e-112	414.0
24	TraesCS5A01G028500	chrUn	78.062	743	103	41	706	1421	303001790	303001081	4.940000e-112	414.0
25	TraesCS5A01G028500	chrUn	90.667	300	17	5	1272	1561	349553629	349553331	2.990000e-104	388.0
26	TraesCS5A01G028500	chrUn	85.479	303	15	12	357	649	459699194	459698911	3.120000e-74	289.0
27	TraesCS5A01G028500	chrUn	87.156	218	24	3	2265	2478	349553086	349552869	6.860000e-61	244.0
28	TraesCS5A01G028500	chrUn	83.509	285	18	17	711	986	459698644	459698380	3.190000e-59	239.0
29	TraesCS5A01G028500	chrUn	96.190	105	4	0	751	855	340491968	340491864	3.280000e-39	172.0
30	TraesCS5A01G028500	chrUn	81.757	148	18	8	1489	1632	289327700	289327558	5.610000e-22	115.0
31	TraesCS5A01G028500	chrUn	81.757	148	18	8	1489	1632	335348468	335348610	5.610000e-22	115.0
32	TraesCS5A01G028500	chrUn	82.000	150	11	8	770	917	65894941	65894806	2.020000e-21	113.0
33	TraesCS5A01G028500	chrUn	82.000	150	11	8	770	917	266222964	266223099	2.020000e-21	113.0
34	TraesCS5A01G028500	chrUn	100.000	45	0	0	1695	1739	298146450	298146406	1.580000e-12	84.2
35	TraesCS5A01G028500	chr5B	83.400	500	39	18	73	566	26611067	26611528	8.210000e-115	424.0
36	TraesCS5A01G028500	chr5B	93.182	88	5	1	869	955	26611550	26611637	7.210000e-26	128.0
37	TraesCS5A01G028500	chr5B	89.831	59	5	1	1	58	26611024	26611082	9.520000e-10	75.0
38	TraesCS5A01G028500	chr6B	86.099	223	27	4	1757	1977	123244946	123245166	1.150000e-58	237.0
39	TraesCS5A01G028500	chr6B	90.303	165	9	5	1815	1977	397553059	397553218	2.500000e-50	209.0
40	TraesCS5A01G028500	chr3A	85.586	222	30	2	1757	1977	584013508	584013728	5.340000e-57	231.0
41	TraesCS5A01G028500	chr3A	85.135	74	11	0	1861	1934	67578837	67578764	2.650000e-10	76.8
42	TraesCS5A01G028500	chr2B	77.570	214	37	11	2008	2216	566406378	566406171	4.340000e-23	119.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G028500	chr5A	24181186	24183668	2482	True	4586.000000	4586	100.000000	1	2483	1	chr5A.!!$R3	2482
1	TraesCS5A01G028500	chr5A	24161015	24161782	767	False	534.000000	534	80.050000	671	1440	1	chr5A.!!$F2	769
2	TraesCS5A01G028500	chr5A	23933654	23934523	869	False	467.500000	752	90.523000	848	1739	2	chr5A.!!$F5	891
3	TraesCS5A01G028500	chr5A	23938262	23938950	688	True	379.000000	379	77.630000	714	1443	1	chr5A.!!$R2	729
4	TraesCS5A01G028500	chr5D	35546839	35552104	5265	True	688.666667	1194	87.797667	1	2479	3	chr5D.!!$R1	2478
5	TraesCS5A01G028500	chr5D	35302538	35305950	3412	False	601.000000	961	87.052000	751	1700	2	chr5D.!!$F3	949
6	TraesCS5A01G028500	chr5D	35293605	35294634	1029	False	567.500000	713	89.253500	357	1326	2	chr5D.!!$F2	969
7	TraesCS5A01G028500	chr5D	35531442	35532120	678	False	499.000000	499	80.737000	764	1440	1	chr5D.!!$F1	676
8	TraesCS5A01G028500	chrUn	264393160	264393665	505	True	630.000000	630	89.231000	444	955	1	chrUn.!!$R2	511
9	TraesCS5A01G028500	chrUn	340388320	340388875	555	True	597.000000	597	86.379000	980	1543	1	chrUn.!!$R6	563
10	TraesCS5A01G028500	chrUn	288040521	288041230	709	True	414.000000	414	78.062000	706	1421	1	chrUn.!!$R3	715
11	TraesCS5A01G028500	chrUn	303001081	303001790	709	True	414.000000	414	78.062000	706	1421	1	chrUn.!!$R5	715
12	TraesCS5A01G028500	chrUn	340491327	340491968	641	True	385.500000	599	92.495000	751	1446	2	chrUn.!!$R8	695
13	TraesCS5A01G028500	chrUn	298146406	298147289	883	True	374.600000	665	90.832500	798	1739	2	chrUn.!!$R7	941
14	TraesCS5A01G028500	chrUn	349552869	349553629	760	True	316.000000	388	88.911500	1272	2478	2	chrUn.!!$R9	1206
15	TraesCS5A01G028500	chrUn	459698380	459699194	814	True	264.000000	289	84.494000	357	986	2	chrUn.!!$R10	629
16	TraesCS5A01G028500	chr5B	26611024	26611637	613	False	209.000000	424	88.804333	1	955	3	chr5B.!!$F1	954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
872	2573	0.037326	ATATGTACGGGGCTGATGCG	60.037	55.0	0.0	0.0	40.82	4.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2080	6970	0.240145	CGCCACAGTCAGTCTCGTTA	59.76	55.0	0.0	0.0	0.0	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
61	63	9.965902	AAGAAATCACTTCATATAGTGGTCTTT	57.034	29.630	5.92	4.50	44.47	2.52
62	64	9.965902	AGAAATCACTTCATATAGTGGTCTTTT	57.034	29.630	5.92	2.76	44.47	2.27
78	80	3.192799	TTTTTGCGGGGACACTTCA	57.807	47.368	0.00	0.00	0.00	3.02
79	81	1.698506	TTTTTGCGGGGACACTTCAT	58.301	45.000	0.00	0.00	0.00	2.57
80	82	2.570415	TTTTGCGGGGACACTTCATA	57.430	45.000	0.00	0.00	0.00	2.15
81	83	2.799126	TTTGCGGGGACACTTCATAT	57.201	45.000	0.00	0.00	0.00	1.78
82	84	3.916359	TTTGCGGGGACACTTCATATA	57.084	42.857	0.00	0.00	0.00	0.86
83	85	3.469008	TTGCGGGGACACTTCATATAG	57.531	47.619	0.00	0.00	0.00	1.31
118	120	5.564550	ACATTGAGACAATAGGACTTTGCT	58.435	37.500	0.00	0.00	0.00	3.91
124	126	8.635765	TGAGACAATAGGACTTTGCTTTTTAT	57.364	30.769	0.00	0.00	0.00	1.40
151	153	9.490379	GTTATTATCTGACAATACCCTACCTTG	57.510	37.037	0.00	0.00	0.00	3.61
191	194	4.935352	AAAGCATGTCAACTAGCCAAAA	57.065	36.364	0.00	0.00	0.00	2.44
192	195	4.935352	AAGCATGTCAACTAGCCAAAAA	57.065	36.364	0.00	0.00	0.00	1.94
193	196	5.473066	AAGCATGTCAACTAGCCAAAAAT	57.527	34.783	0.00	0.00	0.00	1.82
194	197	5.064441	AGCATGTCAACTAGCCAAAAATC	57.936	39.130	0.00	0.00	0.00	2.17
197	200	5.404946	CATGTCAACTAGCCAAAAATCCTG	58.595	41.667	0.00	0.00	0.00	3.86
198	201	4.469657	TGTCAACTAGCCAAAAATCCTGT	58.530	39.130	0.00	0.00	0.00	4.00
200	203	5.362430	TGTCAACTAGCCAAAAATCCTGTTT	59.638	36.000	0.00	0.00	0.00	2.83
207	210	3.683365	CAAAAATCCTGTTTGGGGAGG	57.317	47.619	0.00	0.00	36.21	4.30
209	212	0.413434	AAATCCTGTTTGGGGAGGGG	59.587	55.000	0.00	0.00	36.21	4.79
241	244	1.862201	TGTGTCGCAGTTTACTTTCCG	59.138	47.619	0.00	0.00	0.00	4.30
282	285	9.747898	ACACATTTGTATGTTTAGGAAATAGGA	57.252	29.630	0.00	0.00	42.29	2.94
309	312	8.857098	ACTACGGATACATATTGTCAAGTACAT	58.143	33.333	0.00	0.00	38.10	2.29
449	461	2.366640	TTTTTGGGGAACGTGGATGA	57.633	45.000	0.00	0.00	0.00	2.92
482	494	8.160342	CACGTGTGTAAGTTTGTATAATGAGTC	58.840	37.037	7.58	0.00	0.00	3.36
505	517	7.334421	AGTCATTCAATACGTGAGCTAAACATT	59.666	33.333	0.00	0.00	37.61	2.71
525	537	1.659794	CACGGCAACCCCTTTTGAG	59.340	57.895	0.00	0.00	0.00	3.02
632	647	0.320421	GCCAACAGGCTACGAACAGA	60.320	55.000	0.00	0.00	45.21	3.41
691	759	2.097877	CGTGAATCATCGTCGCATGTAC	60.098	50.000	0.00	0.00	0.00	2.90
692	760	3.116300	GTGAATCATCGTCGCATGTACT	58.884	45.455	0.00	0.00	0.00	2.73
708	784	6.185399	GCATGTACTAACAAGCAATCGTAAG	58.815	40.000	1.24	0.00	46.87	2.34
736	973	1.939934	CACTTTGACGAGAAACTGCCA	59.060	47.619	0.00	0.00	0.00	4.92
794	2482	5.067674	TGCCTAATTAGCTTGCCAATTACAG	59.932	40.000	6.99	0.00	0.00	2.74
872	2573	0.037326	ATATGTACGGGGCTGATGCG	60.037	55.000	0.00	0.00	40.82	4.73
945	2667	1.330521	GCACGCACGGACAAATCATAT	59.669	47.619	0.00	0.00	0.00	1.78
965	2710	1.486211	ACCTACATAGAAGCGGCACT	58.514	50.000	1.45	3.77	0.00	4.40
992	2746	4.058817	GGTTGTAGTATATGCTCCTGTGC	58.941	47.826	0.00	0.00	0.00	4.57
993	2747	4.202264	GGTTGTAGTATATGCTCCTGTGCT	60.202	45.833	0.00	0.00	0.00	4.40
994	2748	4.590850	TGTAGTATATGCTCCTGTGCTG	57.409	45.455	0.00	0.00	0.00	4.41
995	2749	3.321968	TGTAGTATATGCTCCTGTGCTGG	59.678	47.826	0.00	0.00	0.00	4.85
1063	2817	1.460273	GCTCCTCGTCATCTCCCTCC	61.460	65.000	0.00	0.00	0.00	4.30
1220	2977	0.825010	ACGACCACGGTGTACTCCTT	60.825	55.000	11.98	0.00	44.46	3.36
1326	3107	2.584608	GTGTGCCTGGCGGAGTAT	59.415	61.111	14.98	0.00	0.00	2.12
1766	3840	1.003116	CGTCCTGTCGTATTACCTCCG	60.003	57.143	0.00	0.00	0.00	4.63
1784	3858	4.748600	CCTCCGTCCGGATTTATTAGTTTC	59.251	45.833	7.81	0.00	44.24	2.78
1814	6704	1.600023	TGTGTCGGATTTTGACCACC	58.400	50.000	0.00	0.00	35.46	4.61
1822	6712	6.987992	TGTCGGATTTTGACCACCTATATTAC	59.012	38.462	0.00	0.00	35.46	1.89
1996	6886	8.226112	CCTAATACTCCCTCCGTCCTATATAAT	58.774	40.741	0.00	0.00	0.00	1.28
2001	6891	6.011805	ACTCCCTCCGTCCTATATAATAGTGT	60.012	42.308	0.00	0.00	0.00	3.55
2039	6929	3.193267	TCTGCATTCCACAATTTAGTGCC	59.807	43.478	0.00	0.00	38.18	5.01
2045	6935	1.164411	CACAATTTAGTGCCCTCGCA	58.836	50.000	0.00	0.00	44.78	5.10
2058	6948	2.094675	CCCTCGCATTTTCCAACATCT	58.905	47.619	0.00	0.00	0.00	2.90
2066	6956	6.016693	TCGCATTTTCCAACATCTAAGTTTGA	60.017	34.615	0.00	0.00	0.00	2.69
2097	6987	7.596749	ATTTAATTAACGAGACTGACTGTGG	57.403	36.000	0.00	0.00	0.00	4.17
2146	7036	9.811655	GAATTCATATCGAAATAGCGAATTCAA	57.188	29.630	19.82	0.00	42.15	2.69
2149	7039	8.532977	TCATATCGAAATAGCGAATTCAATGA	57.467	30.769	6.22	0.00	44.22	2.57
2184	7075	1.954146	GCGCTGTTGGTCTCGTTGA	60.954	57.895	0.00	0.00	0.00	3.18
2186	7077	1.148310	CGCTGTTGGTCTCGTTGATT	58.852	50.000	0.00	0.00	0.00	2.57
2260	7156	1.588239	TGGAGGGAGTAGGACGAGTA	58.412	55.000	0.00	0.00	0.00	2.59
2304	7200	6.589830	ATGAATAAGAAACCATCTCGAACG	57.410	37.500	0.00	0.00	37.42	3.95
2342	7240	4.308899	ACCGCTGATTAGTGACATCTAC	57.691	45.455	0.00	0.00	36.52	2.59
2352	7250	4.744795	AGTGACATCTACACCCTGAATC	57.255	45.455	0.00	0.00	38.82	2.52
2361	7259	3.475566	ACACCCTGAATCACCGATATG	57.524	47.619	0.00	0.00	0.00	1.78
2429	7329	8.007152	CCGTTTTATTTAATCAACCAAAAGTGC	58.993	33.333	0.00	0.00	0.00	4.40
2467	7367	9.802039	AAACAAATAAGATGGTTAGGAGTACAA	57.198	29.630	0.00	0.00	0.00	2.41
2479	7379	7.792736	TGGTTAGGAGTACAATAGTATCCCAAT	59.207	37.037	0.00	0.00	32.70	3.16
2480	7380	8.312564	GGTTAGGAGTACAATAGTATCCCAATC	58.687	40.741	0.00	0.00	32.70	2.67
2481	7381	9.091220	GTTAGGAGTACAATAGTATCCCAATCT	57.909	37.037	0.00	0.00	32.70	2.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
61	63	2.570415	TATGAAGTGTCCCCGCAAAA	57.430	45.000	0.00	0.00	0.00	2.44
62	64	2.799126	ATATGAAGTGTCCCCGCAAA	57.201	45.000	0.00	0.00	0.00	3.68
63	65	2.769663	ACTATATGAAGTGTCCCCGCAA	59.230	45.455	0.00	0.00	0.00	4.85
64	66	2.102420	CACTATATGAAGTGTCCCCGCA	59.898	50.000	0.00	0.00	41.63	5.69
66	68	2.698797	ACCACTATATGAAGTGTCCCCG	59.301	50.000	5.19	0.00	44.45	5.73
68	70	6.481434	ACTAACCACTATATGAAGTGTCCC	57.519	41.667	5.19	0.00	44.45	4.46
124	126	8.792830	AGGTAGGGTATTGTCAGATAATAACA	57.207	34.615	14.90	0.00	30.97	2.41
181	184	4.871933	CCAAACAGGATTTTTGGCTAGT	57.128	40.909	1.08	0.00	44.94	2.57
191	194	1.518431	CCCCCTCCCCAAACAGGATT	61.518	60.000	0.00	0.00	41.22	3.01
192	195	1.935931	CCCCCTCCCCAAACAGGAT	60.936	63.158	0.00	0.00	41.22	3.24
193	196	2.534272	CCCCCTCCCCAAACAGGA	60.534	66.667	0.00	0.00	41.22	3.86
216	219	6.021596	GGAAAGTAAACTGCGACACAATATG	58.978	40.000	0.00	0.00	0.00	1.78
217	220	5.163893	CGGAAAGTAAACTGCGACACAATAT	60.164	40.000	0.00	0.00	0.00	1.28
218	221	4.150980	CGGAAAGTAAACTGCGACACAATA	59.849	41.667	0.00	0.00	0.00	1.90
219	222	3.059188	CGGAAAGTAAACTGCGACACAAT	60.059	43.478	0.00	0.00	0.00	2.71
220	223	2.285756	CGGAAAGTAAACTGCGACACAA	59.714	45.455	0.00	0.00	0.00	3.33
262	265	9.590451	CGTAGTTCCTATTTCCTAAACATACAA	57.410	33.333	0.00	0.00	0.00	2.41
274	277	9.924650	ACAATATGTATCCGTAGTTCCTATTTC	57.075	33.333	0.00	0.00	0.00	2.17
280	283	7.208080	ACTTGACAATATGTATCCGTAGTTCC	58.792	38.462	0.00	0.00	0.00	3.62
282	285	8.689061	TGTACTTGACAATATGTATCCGTAGTT	58.311	33.333	0.00	0.00	34.15	2.24
309	312	6.128742	GGAGTTCGAGCTACAAAACGAAATTA	60.129	38.462	6.63	0.00	44.11	1.40
399	404	3.616956	TCCACATGACATCTGGACTTC	57.383	47.619	8.25	0.00	0.00	3.01
442	454	3.994392	ACACACGTGTAGAATTCATCCAC	59.006	43.478	22.90	9.68	42.90	4.02
449	461	6.913873	ACAAACTTACACACGTGTAGAATT	57.086	33.333	22.90	12.66	45.57	2.17
482	494	6.907212	GGAATGTTTAGCTCACGTATTGAATG	59.093	38.462	0.00	0.00	32.21	2.67
505	517	1.830408	CAAAAGGGGTTGCCGTGGA	60.830	57.895	0.00	0.00	0.00	4.02
525	537	5.725316	GCTCGTAGCTAAAGAATTTCAGCAC	60.725	44.000	8.27	5.44	40.09	4.40
632	647	4.272748	GTGCCTTTTCGTGTAGTTTCTCTT	59.727	41.667	0.00	0.00	0.00	2.85
691	759	7.915923	TGATACTCTCTTACGATTGCTTGTTAG	59.084	37.037	0.00	0.00	0.00	2.34
692	760	7.701078	GTGATACTCTCTTACGATTGCTTGTTA	59.299	37.037	0.00	0.00	0.00	2.41
708	784	6.306837	CAGTTTCTCGTCAAAGTGATACTCTC	59.693	42.308	9.67	0.00	38.49	3.20
716	953	1.939934	TGGCAGTTTCTCGTCAAAGTG	59.060	47.619	10.51	10.51	39.01	3.16
794	2482	0.375803	ATCCAAATTAACGCGGTCGC	59.624	50.000	12.47	5.16	39.84	5.19
945	2667	2.621998	GAGTGCCGCTTCTATGTAGGTA	59.378	50.000	0.00	0.00	0.00	3.08
965	2710	2.895404	GAGCATATACTACAACCCGGGA	59.105	50.000	32.02	2.56	0.00	5.14
1063	2817	0.979665	TTGGAGCAGAGGAAGGTGAG	59.020	55.000	0.00	0.00	0.00	3.51
1604	3425	2.098607	TCTACTGCCACGTACTACATGC	59.901	50.000	0.00	0.00	0.00	4.06
1669	3490	1.188871	TGCATGACGACCTACCCACA	61.189	55.000	0.00	0.00	0.00	4.17
1747	3821	2.019984	ACGGAGGTAATACGACAGGAC	58.980	52.381	0.00	0.00	37.47	3.85
1766	3840	7.845066	ACAAGAGAAACTAATAAATCCGGAC	57.155	36.000	6.12	0.00	0.00	4.79
1784	3858	7.323656	GTCAAAATCCGACACAAAATACAAGAG	59.676	37.037	0.00	0.00	33.43	2.85
1801	3875	8.974060	TTCAGTAATATAGGTGGTCAAAATCC	57.026	34.615	0.00	0.00	0.00	3.01
1858	6748	9.546428	AAGTTCTTTCAAATACAAATCCAAAGG	57.454	29.630	0.00	0.00	0.00	3.11
1934	6824	8.850454	TTTTGTGCTAAAGTTTGATCTGTAAC	57.150	30.769	0.00	0.00	0.00	2.50
1941	6831	9.643693	CCATCTTATTTTGTGCTAAAGTTTGAT	57.356	29.630	0.00	0.00	0.00	2.57
1943	6833	7.331687	CCCCATCTTATTTTGTGCTAAAGTTTG	59.668	37.037	0.00	0.00	0.00	2.93
1947	6837	5.351458	GCCCCATCTTATTTTGTGCTAAAG	58.649	41.667	0.00	0.00	0.00	1.85
1966	6856	1.192803	CGGAGGGAGTATTAGGCCCC	61.193	65.000	0.00	0.00	43.08	5.80
2020	6910	2.497273	AGGGCACTAAATTGTGGAATGC	59.503	45.455	0.00	0.00	38.31	3.56
2039	6929	4.396166	ACTTAGATGTTGGAAAATGCGAGG	59.604	41.667	0.00	0.00	0.00	4.63
2079	6969	1.335597	CGCCACAGTCAGTCTCGTTAA	60.336	52.381	0.00	0.00	0.00	2.01
2080	6970	0.240145	CGCCACAGTCAGTCTCGTTA	59.760	55.000	0.00	0.00	0.00	3.18
2083	6973	2.126307	CCGCCACAGTCAGTCTCG	60.126	66.667	0.00	0.00	0.00	4.04
2097	6987	3.871594	AGCGATATAATATTTGCTCCCGC	59.128	43.478	0.00	0.00	39.26	6.13
2165	7055	2.108157	AACGAGACCAACAGCGCA	59.892	55.556	11.47	0.00	0.00	6.09
2168	7058	4.742438	TTTAATCAACGAGACCAACAGC	57.258	40.909	0.00	0.00	0.00	4.40
2195	7086	9.109393	TGCGCTTTCTGAGATATAAATTTAACT	57.891	29.630	9.73	2.73	0.00	2.24
2198	7089	7.307989	GCCTGCGCTTTCTGAGATATAAATTTA	60.308	37.037	9.73	0.00	0.00	1.40
2202	7093	3.809832	GCCTGCGCTTTCTGAGATATAAA	59.190	43.478	9.73	0.00	0.00	1.40
2213	7104	0.521291	TGTAATGTGCCTGCGCTTTC	59.479	50.000	9.73	0.00	35.36	2.62
2296	7192	3.665409	GTCACGTGTAAATTCGTTCGAGA	59.335	43.478	16.51	0.00	38.23	4.04
2304	7200	2.968655	GCGGTTTGTCACGTGTAAATTC	59.031	45.455	16.51	12.60	0.00	2.17
2342	7240	2.146342	GCATATCGGTGATTCAGGGTG	58.854	52.381	0.00	0.00	0.00	4.61
2352	7250	3.558829	GCCAGATCATATGCATATCGGTG	59.441	47.826	16.46	7.43	0.00	4.94
2361	7259	4.660789	AAAAGGTTGCCAGATCATATGC	57.339	40.909	0.00	0.00	0.00	3.14
2392	7292	9.057089	TGATTAAATAAAACGGCCAATGTTTTT	57.943	25.926	20.47	11.51	44.69	1.94

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.