Multiple sequence alignment - TraesCS5A01G028300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G028300 chr5A 100.000 3524 0 0 1 3524 24160014 24163537 0.000000e+00 6508.0
1 TraesCS5A01G028300 chr5A 86.364 484 45 9 1305 1773 24177101 24177578 3.140000e-140 508.0
2 TraesCS5A01G028300 chr5A 86.667 420 48 5 88 501 53241663 53241246 3.210000e-125 459.0
3 TraesCS5A01G028300 chr5A 79.864 442 62 16 84 504 575315888 575316323 7.400000e-77 298.0
4 TraesCS5A01G028300 chr5A 83.750 160 15 8 991 1148 23928122 23928272 1.320000e-29 141.0
5 TraesCS5A01G028300 chr5A 80.986 142 26 1 2475 2616 567777070 567776930 1.030000e-20 111.0
6 TraesCS5A01G028300 chr5A 94.340 53 3 0 1888 1940 24177664 24177716 8.110000e-12 82.4
7 TraesCS5A01G028300 chr5A 85.366 82 3 2 1175 1248 23933662 23933742 3.770000e-10 76.8
8 TraesCS5A01G028300 chrUn 85.638 2054 179 40 25 2025 288042257 288040267 0.000000e+00 2052.0
9 TraesCS5A01G028300 chrUn 85.638 2054 179 40 25 2025 303002817 303000827 0.000000e+00 2052.0
10 TraesCS5A01G028300 chrUn 84.756 492 48 14 1306 1773 268037275 268037763 5.330000e-128 468.0
11 TraesCS5A01G028300 chrUn 85.281 462 54 9 1322 1773 340388861 340388404 6.890000e-127 464.0
12 TraesCS5A01G028300 chrUn 79.669 664 102 25 1121 1773 298147287 298146646 6.940000e-122 448.0
13 TraesCS5A01G028300 chrUn 77.273 286 36 18 986 1253 264393451 264393177 1.320000e-29 141.0
14 TraesCS5A01G028300 chr3B 88.758 1192 107 15 2355 3524 744078096 744079282 0.000000e+00 1434.0
15 TraesCS5A01G028300 chr3B 84.259 432 57 8 37 460 707961125 707961553 9.100000e-111 411.0
16 TraesCS5A01G028300 chr3B 80.998 521 60 23 25 512 810257585 810257071 9.230000e-101 377.0
17 TraesCS5A01G028300 chr3B 100.000 32 0 0 1 32 703029125 703029156 3.800000e-05 60.2
18 TraesCS5A01G028300 chr1D 87.978 1073 110 14 2449 3512 33862688 33861626 0.000000e+00 1249.0
19 TraesCS5A01G028300 chr1D 82.456 114 8 3 2357 2458 33864684 33864571 4.850000e-14 89.8
20 TraesCS5A01G028300 chr1D 94.444 36 0 1 2275 2308 410479652 410479617 2.000000e-03 54.7
21 TraesCS5A01G028300 chr5D 90.683 966 46 18 1070 2025 35531428 35532359 0.000000e+00 1245.0
22 TraesCS5A01G028300 chr5D 89.685 921 65 12 172 1075 35530333 35531240 0.000000e+00 1147.0
23 TraesCS5A01G028300 chr5D 83.161 677 76 26 1121 1773 35533993 35534655 5.070000e-163 584.0
24 TraesCS5A01G028300 chr5D 79.689 837 94 47 993 1790 35551732 35550933 5.180000e-148 534.0
25 TraesCS5A01G028300 chr5D 85.276 489 51 14 1305 1772 35326884 35326396 5.290000e-133 484.0
26 TraesCS5A01G028300 chr5D 77.511 876 134 39 986 1831 35304890 35305732 5.330000e-128 468.0
27 TraesCS5A01G028300 chr5D 84.419 430 59 6 35 460 373954049 373953624 1.960000e-112 416.0
28 TraesCS5A01G028300 chr5D 81.457 453 64 14 84 518 225174983 225175433 1.560000e-93 353.0
29 TraesCS5A01G028300 chr5D 79.227 207 22 10 618 813 35290110 35290306 1.330000e-24 124.0
30 TraesCS5A01G028300 chr5D 78.906 128 22 4 2403 2527 449010996 449010871 8.110000e-12 82.4
31 TraesCS5A01G028300 chr5D 78.571 126 26 1 2403 2527 449012767 449012642 8.110000e-12 82.4
32 TraesCS5A01G028300 chr5D 100.000 32 0 0 1 32 416065148 416065117 3.800000e-05 60.2
33 TraesCS5A01G028300 chr5D 86.207 58 3 5 2266 2321 357151470 357151524 1.370000e-04 58.4
34 TraesCS5A01G028300 chr3D 81.529 942 102 33 2159 3050 519259587 519258668 0.000000e+00 710.0
35 TraesCS5A01G028300 chr1A 86.852 540 61 7 2449 2980 32535632 32535095 2.340000e-166 595.0
36 TraesCS5A01G028300 chr1A 81.416 113 9 3 2357 2457 32537698 32537586 8.110000e-12 82.4
37 TraesCS5A01G028300 chr1A 92.500 40 1 2 1 39 573167545 573167507 4.910000e-04 56.5
38 TraesCS5A01G028300 chr1B 87.321 489 44 8 2357 2832 52640514 52640031 8.600000e-151 544.0
39 TraesCS5A01G028300 chr1B 87.191 445 41 6 2357 2789 52570036 52569596 3.160000e-135 492.0
40 TraesCS5A01G028300 chr1B 86.585 410 37 9 3094 3499 52553897 52553502 1.500000e-118 436.0
41 TraesCS5A01G028300 chr1B 82.022 356 28 10 3022 3371 52638454 52638129 1.610000e-68 270.0
42 TraesCS5A01G028300 chr1B 91.791 134 11 0 3366 3499 52637659 52637526 1.670000e-43 187.0
43 TraesCS5A01G028300 chr1B 88.421 95 7 1 2066 2156 51612665 51612571 1.030000e-20 111.0
44 TraesCS5A01G028300 chr1B 87.755 98 2 4 2066 2156 52570679 52570585 4.810000e-19 106.0
45 TraesCS5A01G028300 chr1B 87.755 98 2 4 2066 2156 52641088 52640994 4.810000e-19 106.0
46 TraesCS5A01G028300 chr7D 87.863 379 38 5 85 460 623703950 623704323 4.180000e-119 438.0
47 TraesCS5A01G028300 chr2D 81.569 548 79 8 35 561 540167916 540167370 1.940000e-117 433.0
48 TraesCS5A01G028300 chr2D 93.182 44 2 1 2266 2308 560322986 560323029 2.940000e-06 63.9
49 TraesCS5A01G028300 chr2D 96.970 33 1 0 1 33 588107485 588107517 4.910000e-04 56.5
50 TraesCS5A01G028300 chr2D 100.000 27 0 0 1 27 90076672 90076646 2.300000e-02 51.0
51 TraesCS5A01G028300 chr7A 82.411 506 71 12 28 517 66686630 66687133 3.250000e-115 425.0
52 TraesCS5A01G028300 chr7A 83.521 443 64 4 27 460 25139330 25138888 4.240000e-109 405.0
53 TraesCS5A01G028300 chr7A 88.889 45 4 1 2275 2319 549394803 549394760 2.000000e-03 54.7
54 TraesCS5A01G028300 chr6D 82.794 494 61 8 35 505 287031769 287031277 1.510000e-113 420.0
55 TraesCS5A01G028300 chr6D 92.500 40 0 2 2275 2312 304293457 304293419 2.000000e-03 54.7
56 TraesCS5A01G028300 chr6D 94.444 36 0 1 2275 2308 452846491 452846456 2.000000e-03 54.7
57 TraesCS5A01G028300 chr2B 82.609 437 53 17 35 460 491707587 491707163 7.190000e-97 364.0
58 TraesCS5A01G028300 chr7B 82.057 418 57 7 92 493 637571919 637572334 1.210000e-89 340.0
59 TraesCS5A01G028300 chr7B 92.500 40 0 2 2275 2312 684319067 684319105 2.000000e-03 54.7
60 TraesCS5A01G028300 chr2A 100.000 32 0 0 1 32 543050566 543050535 3.800000e-05 60.2
61 TraesCS5A01G028300 chr2A 100.000 32 0 0 1 32 543065520 543065489 3.800000e-05 60.2
62 TraesCS5A01G028300 chr4A 100.000 31 0 0 1 31 13599518 13599488 1.370000e-04 58.4
63 TraesCS5A01G028300 chr4D 92.500 40 1 2 1 39 287187731 287187769 4.910000e-04 56.5
64 TraesCS5A01G028300 chr6A 94.444 36 0 1 2275 2308 598794898 598794863 2.000000e-03 54.7
65 TraesCS5A01G028300 chr5B 81.944 72 5 5 1189 1253 26611550 26611620 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G028300 chr5A 24160014 24163537 3523 False 6508.00 6508 100.00000 1 3524 1 chr5A.!!$F3 3523
1 TraesCS5A01G028300 chr5A 24177101 24177716 615 False 295.20 508 90.35200 1305 1940 2 chr5A.!!$F5 635
2 TraesCS5A01G028300 chrUn 288040267 288042257 1990 True 2052.00 2052 85.63800 25 2025 1 chrUn.!!$R2 2000
3 TraesCS5A01G028300 chrUn 303000827 303002817 1990 True 2052.00 2052 85.63800 25 2025 1 chrUn.!!$R4 2000
4 TraesCS5A01G028300 chrUn 298146646 298147287 641 True 448.00 448 79.66900 1121 1773 1 chrUn.!!$R3 652
5 TraesCS5A01G028300 chr3B 744078096 744079282 1186 False 1434.00 1434 88.75800 2355 3524 1 chr3B.!!$F3 1169
6 TraesCS5A01G028300 chr3B 810257071 810257585 514 True 377.00 377 80.99800 25 512 1 chr3B.!!$R1 487
7 TraesCS5A01G028300 chr1D 33861626 33864684 3058 True 669.40 1249 85.21700 2357 3512 2 chr1D.!!$R2 1155
8 TraesCS5A01G028300 chr5D 35530333 35534655 4322 False 992.00 1245 87.84300 172 2025 3 chr5D.!!$F5 1853
9 TraesCS5A01G028300 chr5D 35550933 35551732 799 True 534.00 534 79.68900 993 1790 1 chr5D.!!$R2 797
10 TraesCS5A01G028300 chr5D 35304890 35305732 842 False 468.00 468 77.51100 986 1831 1 chr5D.!!$F2 845
11 TraesCS5A01G028300 chr3D 519258668 519259587 919 True 710.00 710 81.52900 2159 3050 1 chr3D.!!$R1 891
12 TraesCS5A01G028300 chr1A 32535095 32537698 2603 True 338.70 595 84.13400 2357 2980 2 chr1A.!!$R2 623
13 TraesCS5A01G028300 chr1B 52569596 52570679 1083 True 299.00 492 87.47300 2066 2789 2 chr1B.!!$R3 723
14 TraesCS5A01G028300 chr1B 52637526 52641088 3562 True 276.75 544 87.22225 2066 3499 4 chr1B.!!$R4 1433
15 TraesCS5A01G028300 chr2D 540167370 540167916 546 True 433.00 433 81.56900 35 561 1 chr2D.!!$R2 526
16 TraesCS5A01G028300 chr7A 66686630 66687133 503 False 425.00 425 82.41100 28 517 1 chr7A.!!$F1 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 853 0.032130 TTCACGAGACCACACAGAGC 59.968 55.0 0.0 0.0 0.0 4.09 F
914 972 0.179015 TGAACCCCGCAAAACAGCTA 60.179 50.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 2206 0.034896 GCTCCCTCGTGGAAAGTTCA 59.965 55.0 4.76 0.0 44.57 3.18 R
2806 8400 0.476771 ACAAAGGGGTAGGGTGTGTG 59.523 55.0 0.00 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
32 33 3.624777 CATATTTCCTTCACAGCCCACT 58.375 45.455 0.00 0.00 0.00 4.00
143 156 1.468520 CCCGCATTGTGAAGAAACGAT 59.531 47.619 0.00 0.00 0.00 3.73
235 252 0.178987 GGAGGAGGAGGACAGCGATA 60.179 60.000 0.00 0.00 0.00 2.92
255 272 2.419198 GATGACTGCTCCGGCGAT 59.581 61.111 9.30 0.00 42.25 4.58
285 302 1.437986 GCTCGATCCCTACTGCGTT 59.562 57.895 0.00 0.00 0.00 4.84
427 454 2.125326 TGATGGAGTAGCCGGACGG 61.125 63.158 5.05 6.35 40.66 4.79
439 466 2.250939 CGGACGGTGTGTGTGCATT 61.251 57.895 0.00 0.00 0.00 3.56
524 561 9.623000 ATTTGAGATGTGATCAATCAATGTCTA 57.377 29.630 15.62 4.44 38.75 2.59
529 566 4.081142 TGTGATCAATCAATGTCTACGGGT 60.081 41.667 0.00 0.00 38.75 5.28
552 599 4.052229 CACGGACGTTCGAGGGCT 62.052 66.667 25.79 0.00 0.00 5.19
600 648 1.159285 CTCAGCAACCAAATGAGCGA 58.841 50.000 0.00 0.00 34.55 4.93
675 724 3.626028 AAGAAACAGTCGAATGTTGCC 57.374 42.857 29.46 22.89 42.49 4.52
699 748 3.956199 AGGGGTAATTGACGAGATACGAA 59.044 43.478 0.00 0.00 45.77 3.85
804 853 0.032130 TTCACGAGACCACACAGAGC 59.968 55.000 0.00 0.00 0.00 4.09
806 855 0.941463 CACGAGACCACACAGAGCAC 60.941 60.000 0.00 0.00 0.00 4.40
810 859 0.598562 AGACCACACAGAGCACTACG 59.401 55.000 0.00 0.00 0.00 3.51
811 860 0.314302 GACCACACAGAGCACTACGT 59.686 55.000 0.00 0.00 0.00 3.57
812 861 1.538512 GACCACACAGAGCACTACGTA 59.461 52.381 0.00 0.00 0.00 3.57
813 862 1.540267 ACCACACAGAGCACTACGTAG 59.460 52.381 20.97 20.97 0.00 3.51
818 876 2.098280 CACAGAGCACTACGTAGCAGAT 59.902 50.000 22.40 13.91 0.00 2.90
833 891 0.392193 CAGATTCTCCAAGCAGGCGT 60.392 55.000 0.00 0.00 37.29 5.68
883 941 6.963805 GTCAGAAATTAAGCCTCATTCTTTCG 59.036 38.462 0.00 0.00 0.00 3.46
912 970 0.667184 CATGAACCCCGCAAAACAGC 60.667 55.000 0.00 0.00 0.00 4.40
913 971 0.827507 ATGAACCCCGCAAAACAGCT 60.828 50.000 0.00 0.00 0.00 4.24
914 972 0.179015 TGAACCCCGCAAAACAGCTA 60.179 50.000 0.00 0.00 0.00 3.32
938 999 1.131638 TACTAGGCCAATCTGCAGGG 58.868 55.000 15.13 8.60 0.00 4.45
981 1057 2.708514 CGGTGGTCGTATAAGTACACG 58.291 52.381 0.00 0.00 39.48 4.49
982 1058 2.539547 CGGTGGTCGTATAAGTACACGG 60.540 54.545 3.94 8.14 38.66 4.94
983 1059 2.682856 GGTGGTCGTATAAGTACACGGA 59.317 50.000 3.94 0.00 38.66 4.69
984 1060 3.242870 GGTGGTCGTATAAGTACACGGAG 60.243 52.174 3.94 0.00 38.66 4.63
986 1062 4.570772 GTGGTCGTATAAGTACACGGAGTA 59.429 45.833 3.94 0.00 41.61 2.59
987 1063 5.237344 GTGGTCGTATAAGTACACGGAGTAT 59.763 44.000 3.94 0.00 41.61 2.12
1075 1160 3.541632 AGGAACAGCCGGTAATTACATG 58.458 45.455 17.16 11.56 43.43 3.21
1086 1366 7.500892 AGCCGGTAATTACATGATATTCAAACA 59.499 33.333 17.16 0.00 0.00 2.83
1087 1367 8.132362 GCCGGTAATTACATGATATTCAAACAA 58.868 33.333 17.16 0.00 0.00 2.83
1148 1428 0.254747 TTGGATTTGGACCGGGCTAG 59.745 55.000 7.57 0.00 0.00 3.42
1162 1453 1.404315 GGGCTAGTTCGTTCTCACTGG 60.404 57.143 0.00 0.00 0.00 4.00
1168 1460 4.189639 AGTTCGTTCTCACTGGGTTATC 57.810 45.455 0.00 0.00 0.00 1.75
1271 1571 7.068839 ACGGACAATATATTGAGACTTGAGACT 59.931 37.037 28.13 4.71 40.14 3.24
1272 1572 7.923344 CGGACAATATATTGAGACTTGAGACTT 59.077 37.037 28.13 4.52 40.14 3.01
1273 1573 9.039870 GGACAATATATTGAGACTTGAGACTTG 57.960 37.037 28.13 1.75 40.14 3.16
1274 1574 9.809096 GACAATATATTGAGACTTGAGACTTGA 57.191 33.333 28.13 0.00 40.14 3.02
1275 1575 9.814899 ACAATATATTGAGACTTGAGACTTGAG 57.185 33.333 28.13 0.00 40.14 3.02
1366 1680 4.241555 GATCGGCGCCTCCATGGT 62.242 66.667 26.68 3.79 38.35 3.55
1542 1862 0.957395 GACCACGGTGTACTCCTCGA 60.957 60.000 11.98 0.00 0.00 4.04
1630 1974 2.430244 GGACGACACGCACACGAT 60.430 61.111 0.00 0.00 43.93 3.73
1776 2120 4.183686 GCACGTCGCCGCCTAGTA 62.184 66.667 0.00 0.00 37.70 1.82
1777 2121 2.277756 CACGTCGCCGCCTAGTAC 60.278 66.667 0.00 0.00 37.70 2.73
1778 2122 3.869272 ACGTCGCCGCCTAGTACG 61.869 66.667 0.00 0.00 39.37 3.67
1779 2123 3.869272 CGTCGCCGCCTAGTACGT 61.869 66.667 0.00 0.00 0.00 3.57
1780 2124 2.277756 GTCGCCGCCTAGTACGTG 60.278 66.667 0.00 0.00 0.00 4.49
1784 2128 4.189188 CCGCCTAGTACGTGCGCT 62.189 66.667 9.73 3.37 46.50 5.92
1785 2129 2.651232 CGCCTAGTACGTGCGCTC 60.651 66.667 9.73 3.51 41.95 5.03
1819 2169 1.626321 TGCGGTTATGGACTCCTGAAA 59.374 47.619 0.00 0.00 0.00 2.69
1883 2239 0.321564 CCACGAGGGAGCAACATTCA 60.322 55.000 0.00 0.00 40.01 2.57
1996 2402 6.491062 TCCCTTGGCTCATATTTATTCATGTG 59.509 38.462 0.00 0.00 0.00 3.21
2025 2433 1.270678 ACCGTGTGAAGTTCTAAGGGC 60.271 52.381 4.17 0.00 0.00 5.19
2026 2434 1.270625 CCGTGTGAAGTTCTAAGGGCA 60.271 52.381 4.17 0.00 0.00 5.36
2027 2435 2.615493 CCGTGTGAAGTTCTAAGGGCAT 60.615 50.000 4.17 0.00 0.00 4.40
2028 2436 2.673368 CGTGTGAAGTTCTAAGGGCATC 59.327 50.000 4.17 0.00 0.00 3.91
2029 2437 3.617531 CGTGTGAAGTTCTAAGGGCATCT 60.618 47.826 4.17 0.00 0.00 2.90
2030 2438 4.327680 GTGTGAAGTTCTAAGGGCATCTT 58.672 43.478 4.17 0.00 39.40 2.40
2031 2439 4.393371 GTGTGAAGTTCTAAGGGCATCTTC 59.607 45.833 4.17 0.00 36.93 2.87
2032 2440 4.041567 TGTGAAGTTCTAAGGGCATCTTCA 59.958 41.667 4.17 0.00 38.84 3.02
2033 2441 5.003804 GTGAAGTTCTAAGGGCATCTTCAA 58.996 41.667 4.17 0.00 41.38 2.69
2034 2442 5.649831 GTGAAGTTCTAAGGGCATCTTCAAT 59.350 40.000 4.17 0.00 41.38 2.57
2035 2443 6.823689 GTGAAGTTCTAAGGGCATCTTCAATA 59.176 38.462 4.17 0.00 41.38 1.90
2036 2444 7.336931 GTGAAGTTCTAAGGGCATCTTCAATAA 59.663 37.037 4.17 0.00 41.38 1.40
2037 2445 7.336931 TGAAGTTCTAAGGGCATCTTCAATAAC 59.663 37.037 4.17 0.00 38.42 1.89
2038 2446 6.721318 AGTTCTAAGGGCATCTTCAATAACA 58.279 36.000 0.00 0.00 36.93 2.41
2039 2447 7.175104 AGTTCTAAGGGCATCTTCAATAACAA 58.825 34.615 0.00 0.00 36.93 2.83
2040 2448 7.121315 AGTTCTAAGGGCATCTTCAATAACAAC 59.879 37.037 0.00 0.00 36.93 3.32
2041 2449 5.885912 TCTAAGGGCATCTTCAATAACAACC 59.114 40.000 0.00 0.00 36.93 3.77
2044 2452 2.752903 GGCATCTTCAATAACAACCCGT 59.247 45.455 0.00 0.00 0.00 5.28
2049 2457 6.472163 GCATCTTCAATAACAACCCGTAAATG 59.528 38.462 0.00 0.00 0.00 2.32
2054 2462 8.943909 TTCAATAACAACCCGTAAATGTTTTT 57.056 26.923 0.00 0.00 38.22 1.94
2055 2463 8.354011 TCAATAACAACCCGTAAATGTTTTTG 57.646 30.769 11.99 11.99 42.32 2.44
2061 2469 3.243602 ACCCGTAAATGTTTTTGACAGGC 60.244 43.478 0.00 0.00 42.62 4.85
2063 2471 4.363999 CCGTAAATGTTTTTGACAGGCAA 58.636 39.130 0.00 0.00 42.62 4.52
2064 2472 4.806247 CCGTAAATGTTTTTGACAGGCAAA 59.194 37.500 0.00 0.00 44.38 3.68
2156 2598 8.730680 CCATACTGACTAAAATATGGGCATAAC 58.269 37.037 0.00 0.00 40.23 1.89
2175 2865 7.053316 CATAACCCAATTTCCATTATGCAGA 57.947 36.000 0.00 0.00 0.00 4.26
2245 3007 8.766492 ACCCCCTATATCAATTCCACTAATTA 57.234 34.615 0.00 0.00 35.54 1.40
2348 3435 5.895889 GTGTCGTGTGCAAATTTTCATTTTC 59.104 36.000 0.00 0.00 29.41 2.29
2417 3540 6.765989 TGTCTATTCCATTTTCTTCGTATGGG 59.234 38.462 0.00 0.00 39.42 4.00
2440 3563 7.735777 TGGGAAACTACACATATTATAGGCCTA 59.264 37.037 16.60 16.60 0.00 3.93
2463 8053 6.814954 ACCTATGTCTTTGTACATCATCCT 57.185 37.500 0.00 0.00 40.52 3.24
2654 8248 7.706100 AGCTAGTTAACTTGTACTCTAAGCT 57.294 36.000 14.49 14.74 0.00 3.74
2679 8273 2.616634 AGATCGTCTGAAGCATGCAT 57.383 45.000 21.98 8.13 0.00 3.96
2759 8353 6.758416 CCTAATCTTGATGTCGAGTGATTTCA 59.242 38.462 0.00 0.00 0.00 2.69
2760 8354 6.414408 AATCTTGATGTCGAGTGATTTCAC 57.586 37.500 2.41 2.41 46.77 3.18
2774 8368 6.963049 GTGATTTCACACGAGTAGGTTTAT 57.037 37.500 5.84 0.00 45.75 1.40
2777 8371 6.309494 TGATTTCACACGAGTAGGTTTATTCG 59.691 38.462 0.00 0.00 42.61 3.34
2801 8395 6.198403 CGTGTGCTTGTATGTGTATAAGTAGG 59.802 42.308 0.00 0.00 33.14 3.18
2806 8400 6.424207 GCTTGTATGTGTATAAGTAGGGAAGC 59.576 42.308 0.00 0.00 33.14 3.86
2832 8572 4.167307 ACACCCTACCCCTTTGTAATATGG 59.833 45.833 0.00 0.00 0.00 2.74
2919 8663 1.597663 GATTGGTGTGCGTGCCTATAC 59.402 52.381 0.00 0.00 0.00 1.47
2921 8665 0.611200 TGGTGTGCGTGCCTATACTT 59.389 50.000 0.00 0.00 0.00 2.24
2993 8738 4.209288 CGTATTTTGATCTCGGCGAAAGAT 59.791 41.667 12.13 11.44 36.19 2.40
2999 8744 3.557185 TGATCTCGGCGAAAGATTTCATG 59.443 43.478 12.13 0.00 37.01 3.07
3015 8760 7.383102 GATTTCATGAAGTCCAAGAAAGCTA 57.617 36.000 17.72 0.00 43.12 3.32
3017 8762 4.836825 TCATGAAGTCCAAGAAAGCTAGG 58.163 43.478 0.00 0.00 0.00 3.02
3060 10211 4.563337 AAAAAGAGTGACCGGCTAAAAC 57.437 40.909 0.00 0.00 0.00 2.43
3083 10234 5.163195 ACTGTAAATTCAGTCACTTGACCCT 60.163 40.000 5.73 0.00 44.07 4.34
3086 10237 7.458397 TGTAAATTCAGTCACTTGACCCTTAT 58.542 34.615 5.73 0.00 45.85 1.73
3099 10250 1.048724 CCCTTATCCAGCCCTGACGA 61.049 60.000 0.00 0.00 0.00 4.20
3134 10285 4.159506 AGTTTTGGCAATACACAACACAGT 59.840 37.500 20.35 0.00 34.39 3.55
3140 10291 4.502645 GGCAATACACAACACAGTTTGTTC 59.497 41.667 0.00 0.00 46.05 3.18
3149 10300 5.067674 ACAACACAGTTTGTTCACAGCATAT 59.932 36.000 0.00 0.00 46.05 1.78
3193 10345 4.394439 AACCCGTGCACAAAAAGTAAAT 57.606 36.364 18.64 0.00 0.00 1.40
3213 10365 7.936301 AGTAAATGGCCAAAACACAACATATTT 59.064 29.630 10.96 3.16 0.00 1.40
3269 10421 0.607762 TGCATAAGCGACAAGGCCAA 60.608 50.000 5.01 0.00 46.23 4.52
3338 10492 1.450312 GGCCACTGGGATCGAGTTG 60.450 63.158 0.00 0.00 35.59 3.16
3364 10994 3.457234 GATGGATGATCAAGCACGTGTA 58.543 45.455 18.38 0.79 0.00 2.90
3371 11001 6.350194 GGATGATCAAGCACGTGTATAGGATA 60.350 42.308 18.38 0.00 0.00 2.59
3378 11008 5.529791 AGCACGTGTATAGGATACATCAAC 58.470 41.667 18.38 0.00 41.41 3.18
3382 11012 7.308408 GCACGTGTATAGGATACATCAACTCTA 60.308 40.741 18.38 0.00 41.41 2.43
3408 11038 2.888834 TTGGGTTGCTTCTTCAAAGC 57.111 45.000 2.87 2.87 43.29 3.51
3433 11063 5.590530 AGACTAACATGGTGCTTCTAGAG 57.409 43.478 0.00 0.00 0.00 2.43
3463 11093 0.842467 AGCTTAGTTGAGTGGGGGCT 60.842 55.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.103153 TGTGAAGGAAATATGCCCTAGAGG 59.897 45.833 0.00 0.00 39.47 3.69
3 4 5.296151 TGTGAAGGAAATATGCCCTAGAG 57.704 43.478 0.00 0.00 31.36 2.43
4 5 4.444876 GCTGTGAAGGAAATATGCCCTAGA 60.445 45.833 0.00 0.00 31.36 2.43
5 6 3.817647 GCTGTGAAGGAAATATGCCCTAG 59.182 47.826 0.00 0.00 31.36 3.02
6 7 3.435026 GGCTGTGAAGGAAATATGCCCTA 60.435 47.826 0.00 0.00 33.66 3.53
7 8 2.659428 GCTGTGAAGGAAATATGCCCT 58.341 47.619 0.00 0.00 0.00 5.19
8 9 1.683385 GGCTGTGAAGGAAATATGCCC 59.317 52.381 0.00 0.00 33.66 5.36
9 10 1.683385 GGGCTGTGAAGGAAATATGCC 59.317 52.381 0.00 0.00 38.49 4.40
10 11 2.099756 GTGGGCTGTGAAGGAAATATGC 59.900 50.000 0.00 0.00 0.00 3.14
11 12 3.624777 AGTGGGCTGTGAAGGAAATATG 58.375 45.455 0.00 0.00 0.00 1.78
12 13 5.380043 CATAGTGGGCTGTGAAGGAAATAT 58.620 41.667 0.00 0.00 36.13 1.28
13 14 4.385199 CCATAGTGGGCTGTGAAGGAAATA 60.385 45.833 0.00 0.00 36.13 1.40
14 15 3.624777 CATAGTGGGCTGTGAAGGAAAT 58.375 45.455 0.00 0.00 36.13 2.17
15 16 2.290896 CCATAGTGGGCTGTGAAGGAAA 60.291 50.000 0.00 0.00 36.13 3.13
16 17 1.281867 CCATAGTGGGCTGTGAAGGAA 59.718 52.381 0.00 0.00 36.13 3.36
17 18 0.911769 CCATAGTGGGCTGTGAAGGA 59.088 55.000 0.00 0.00 36.13 3.36
18 19 3.483954 CCATAGTGGGCTGTGAAGG 57.516 57.895 0.00 0.00 36.13 3.46
32 33 5.094387 GACCCTTATCCTCTCATTCCCATA 58.906 45.833 0.00 0.00 0.00 2.74
40 41 1.107538 CGGCGACCCTTATCCTCTCA 61.108 60.000 0.00 0.00 0.00 3.27
107 120 2.742116 GGGTGCGGATGGCTTCCTA 61.742 63.158 16.47 3.88 42.99 2.94
169 183 2.425592 CGCCCGATTATGCCCTCA 59.574 61.111 0.00 0.00 0.00 3.86
173 187 2.668550 GGACCGCCCGATTATGCC 60.669 66.667 0.00 0.00 0.00 4.40
223 237 2.033550 AGTCATCGTTATCGCTGTCCTC 59.966 50.000 0.00 0.00 35.19 3.71
235 252 2.125512 GCCGGAGCAGTCATCGTT 60.126 61.111 5.05 0.00 39.53 3.85
255 272 1.819288 GGATCGAGCCGGATCTAATCA 59.181 52.381 24.44 4.90 41.99 2.57
427 454 4.221342 CAACTATGTCAATGCACACACAC 58.779 43.478 0.00 0.00 0.00 3.82
439 466 7.634671 ATCTCAAATTCATGCAACTATGTCA 57.365 32.000 0.00 0.00 0.00 3.58
506 543 4.081142 ACCCGTAGACATTGATTGATCACA 60.081 41.667 0.00 0.00 36.36 3.58
551 598 0.615544 ACCACCATGGGCAAATCCAG 60.616 55.000 18.09 0.00 43.37 3.86
552 599 0.178909 AACCACCATGGGCAAATCCA 60.179 50.000 18.09 0.00 43.37 3.41
565 613 1.808945 CTGAGAGCATCAACAACCACC 59.191 52.381 0.00 0.00 37.52 4.61
600 648 3.986277 ACGAACTGTTACCAAGATTCGT 58.014 40.909 4.15 4.15 45.15 3.85
675 724 4.758674 TCGTATCTCGTCAATTACCCCTAG 59.241 45.833 0.00 0.00 40.80 3.02
699 748 4.189231 GTTGGCTAATGAAGACCGTACAT 58.811 43.478 0.00 0.00 28.59 2.29
742 791 1.168714 ATTTCAGCGGTCAAGAAGGC 58.831 50.000 0.00 0.00 0.00 4.35
747 796 2.982470 GAGCAAAATTTCAGCGGTCAAG 59.018 45.455 9.18 0.00 0.00 3.02
804 853 4.355437 CTTGGAGAATCTGCTACGTAGTG 58.645 47.826 22.98 15.95 36.70 2.74
806 855 3.181486 TGCTTGGAGAATCTGCTACGTAG 60.181 47.826 18.47 18.47 33.73 3.51
810 859 2.559440 CCTGCTTGGAGAATCTGCTAC 58.441 52.381 2.94 0.00 38.35 3.58
811 860 1.134280 GCCTGCTTGGAGAATCTGCTA 60.134 52.381 2.94 0.00 38.35 3.49
812 861 0.394080 GCCTGCTTGGAGAATCTGCT 60.394 55.000 2.94 0.00 38.35 4.24
813 862 1.712977 CGCCTGCTTGGAGAATCTGC 61.713 60.000 0.00 0.00 37.90 4.26
818 876 1.079127 GCTACGCCTGCTTGGAGAA 60.079 57.895 7.01 0.00 39.07 2.87
833 891 0.457035 CGTAACCCGTTGGCTAGCTA 59.543 55.000 15.72 5.44 33.59 3.32
883 941 1.663379 GGGGTTCATGCGTTTAGGCC 61.663 60.000 0.00 0.00 0.00 5.19
912 970 4.827835 TGCAGATTGGCCTAGTACTAGTAG 59.172 45.833 24.84 13.83 0.00 2.57
913 971 4.800023 TGCAGATTGGCCTAGTACTAGTA 58.200 43.478 24.84 10.90 0.00 1.82
914 972 3.639094 CTGCAGATTGGCCTAGTACTAGT 59.361 47.826 24.84 9.11 0.00 2.57
938 999 4.023963 GTGTAACTTTGCCAGGAGAAAGAC 60.024 45.833 15.29 7.12 34.02 3.01
973 1049 7.040823 GCCAGTAGTATAATACTCCGTGTACTT 60.041 40.741 9.84 0.00 40.14 2.24
974 1050 6.429385 GCCAGTAGTATAATACTCCGTGTACT 59.571 42.308 9.84 0.00 40.14 2.73
975 1051 6.205464 TGCCAGTAGTATAATACTCCGTGTAC 59.795 42.308 9.84 0.00 40.14 2.90
976 1052 6.205464 GTGCCAGTAGTATAATACTCCGTGTA 59.795 42.308 9.84 0.00 40.14 2.90
977 1053 5.009410 GTGCCAGTAGTATAATACTCCGTGT 59.991 44.000 9.84 0.00 40.14 4.49
978 1054 5.458891 GTGCCAGTAGTATAATACTCCGTG 58.541 45.833 9.84 0.79 40.14 4.94
979 1055 4.214971 CGTGCCAGTAGTATAATACTCCGT 59.785 45.833 9.84 0.00 40.14 4.69
980 1056 4.214971 ACGTGCCAGTAGTATAATACTCCG 59.785 45.833 9.84 11.61 40.14 4.63
981 1057 5.240183 TCACGTGCCAGTAGTATAATACTCC 59.760 44.000 11.67 5.47 40.14 3.85
982 1058 6.309712 TCACGTGCCAGTAGTATAATACTC 57.690 41.667 11.67 1.55 40.14 2.59
983 1059 6.460676 GGTTCACGTGCCAGTAGTATAATACT 60.461 42.308 11.67 7.04 42.68 2.12
984 1060 5.689068 GGTTCACGTGCCAGTAGTATAATAC 59.311 44.000 11.67 2.07 0.00 1.89
985 1061 5.360429 TGGTTCACGTGCCAGTAGTATAATA 59.640 40.000 11.67 0.00 0.00 0.98
986 1062 4.160814 TGGTTCACGTGCCAGTAGTATAAT 59.839 41.667 11.67 0.00 0.00 1.28
987 1063 3.510753 TGGTTCACGTGCCAGTAGTATAA 59.489 43.478 11.67 0.00 0.00 0.98
1075 1160 9.617975 GCTAATTAGGCATCTTGTTTGAATATC 57.382 33.333 14.28 0.00 0.00 1.63
1148 1428 4.189639 AGATAACCCAGTGAGAACGAAC 57.810 45.455 0.00 0.00 0.00 3.95
1162 1453 3.997021 CCTTCGGACATGCATAGATAACC 59.003 47.826 0.00 0.00 0.00 2.85
1168 1460 1.202568 TCAGCCTTCGGACATGCATAG 60.203 52.381 0.00 0.00 0.00 2.23
1271 1571 2.338620 CGGTCGTGCCACTCTCAA 59.661 61.111 0.00 0.00 36.97 3.02
1272 1572 3.680786 CCGGTCGTGCCACTCTCA 61.681 66.667 0.00 0.00 36.97 3.27
1273 1573 3.371063 TCCGGTCGTGCCACTCTC 61.371 66.667 0.00 0.00 36.97 3.20
1274 1574 3.681835 GTCCGGTCGTGCCACTCT 61.682 66.667 0.00 0.00 36.97 3.24
1294 1608 0.029300 CGGCAATATCCAACCGCAAG 59.971 55.000 0.00 0.00 39.08 4.01
1442 1759 3.685214 GACGACGCTCCGCTGTGAT 62.685 63.158 0.00 0.00 0.00 3.06
1555 1875 3.313874 CCATCTGGCCTTCGTCCT 58.686 61.111 3.32 0.00 0.00 3.85
1804 2148 3.056107 CGTGACCTTTCAGGAGTCCATAA 60.056 47.826 12.86 1.70 39.57 1.90
1808 2152 0.037232 CCGTGACCTTTCAGGAGTCC 60.037 60.000 0.00 0.00 39.57 3.85
1856 2206 0.034896 GCTCCCTCGTGGAAAGTTCA 59.965 55.000 4.76 0.00 44.57 3.18
1905 2311 2.691011 CCTCTTCTACACTCTGCCCTAC 59.309 54.545 0.00 0.00 0.00 3.18
1996 2402 1.871039 ACTTCACACGGTGCATTGTAC 59.129 47.619 8.30 0.00 32.98 2.90
2025 2433 7.535139 ACATTTACGGGTTGTTATTGAAGATG 58.465 34.615 0.00 0.00 0.00 2.90
2026 2434 7.696992 ACATTTACGGGTTGTTATTGAAGAT 57.303 32.000 0.00 0.00 0.00 2.40
2027 2435 7.513371 AACATTTACGGGTTGTTATTGAAGA 57.487 32.000 0.00 0.00 32.09 2.87
2028 2436 8.582433 AAAACATTTACGGGTTGTTATTGAAG 57.418 30.769 0.00 0.00 33.44 3.02
2029 2437 8.818057 CAAAAACATTTACGGGTTGTTATTGAA 58.182 29.630 0.00 0.00 33.44 2.69
2030 2438 8.195436 TCAAAAACATTTACGGGTTGTTATTGA 58.805 29.630 0.00 0.00 33.44 2.57
2031 2439 8.270111 GTCAAAAACATTTACGGGTTGTTATTG 58.730 33.333 0.00 0.00 33.44 1.90
2032 2440 7.980099 TGTCAAAAACATTTACGGGTTGTTATT 59.020 29.630 0.00 0.00 33.44 1.40
2033 2441 7.490000 TGTCAAAAACATTTACGGGTTGTTAT 58.510 30.769 0.00 0.00 33.44 1.89
2034 2442 6.860080 TGTCAAAAACATTTACGGGTTGTTA 58.140 32.000 0.00 0.00 33.44 2.41
2035 2443 5.721232 TGTCAAAAACATTTACGGGTTGTT 58.279 33.333 0.00 0.00 35.19 2.83
2036 2444 5.326200 TGTCAAAAACATTTACGGGTTGT 57.674 34.783 0.00 0.00 31.20 3.32
2037 2445 4.742659 CCTGTCAAAAACATTTACGGGTTG 59.257 41.667 0.00 0.00 37.23 3.77
2038 2446 4.738243 GCCTGTCAAAAACATTTACGGGTT 60.738 41.667 0.00 0.00 38.59 4.11
2039 2447 3.243602 GCCTGTCAAAAACATTTACGGGT 60.244 43.478 0.00 0.00 38.59 5.28
2040 2448 3.243569 TGCCTGTCAAAAACATTTACGGG 60.244 43.478 0.00 0.00 37.23 5.28
2041 2449 3.971150 TGCCTGTCAAAAACATTTACGG 58.029 40.909 0.00 0.00 37.23 4.02
2044 2452 4.813697 GCCTTTGCCTGTCAAAAACATTTA 59.186 37.500 0.00 0.00 43.44 1.40
2049 2457 1.208259 CGCCTTTGCCTGTCAAAAAC 58.792 50.000 0.00 0.00 43.44 2.43
2054 2462 2.281484 GTCCGCCTTTGCCTGTCA 60.281 61.111 0.00 0.00 0.00 3.58
2055 2463 3.056328 GGTCCGCCTTTGCCTGTC 61.056 66.667 0.00 0.00 0.00 3.51
2061 2469 1.448922 TTTCGTTGGGTCCGCCTTTG 61.449 55.000 0.00 0.00 34.45 2.77
2063 2471 0.752376 TTTTTCGTTGGGTCCGCCTT 60.752 50.000 0.00 0.00 34.45 4.35
2064 2472 1.152922 TTTTTCGTTGGGTCCGCCT 60.153 52.632 0.00 0.00 34.45 5.52
2083 2491 1.698532 TGGTCATGCATTTTTGCCCTT 59.301 42.857 0.00 0.00 0.00 3.95
2084 2492 1.350071 TGGTCATGCATTTTTGCCCT 58.650 45.000 0.00 0.00 0.00 5.19
2099 2514 6.150976 TGACTTGTTGGTTCATGAATATGGTC 59.849 38.462 12.12 13.09 34.97 4.02
2115 2557 4.696877 TCAGTATGGATGCTTGACTTGTTG 59.303 41.667 0.00 0.00 36.16 3.33
2116 2558 4.697352 GTCAGTATGGATGCTTGACTTGTT 59.303 41.667 0.00 0.00 36.16 2.83
2117 2559 4.019860 AGTCAGTATGGATGCTTGACTTGT 60.020 41.667 7.87 0.00 36.16 3.16
2156 2598 3.243975 GCCTCTGCATAATGGAAATTGGG 60.244 47.826 0.00 0.00 37.47 4.12
2245 3007 8.670490 AGAAAAGGTCTCTCTTAATAAGGGTTT 58.330 33.333 0.00 0.00 0.00 3.27
2248 3010 9.825109 CTAAGAAAAGGTCTCTCTTAATAAGGG 57.175 37.037 0.00 0.00 34.56 3.95
2262 3026 9.914131 AATAGTGCAATTTTCTAAGAAAAGGTC 57.086 29.630 0.00 0.00 0.00 3.85
2322 3086 3.838120 TGAAAATTTGCACACGACACAA 58.162 36.364 0.00 0.00 0.00 3.33
2325 3089 5.006165 GGAAAATGAAAATTTGCACACGACA 59.994 36.000 0.00 0.00 0.00 4.35
2328 3105 5.655893 AGGAAAATGAAAATTTGCACACG 57.344 34.783 0.00 0.00 31.36 4.49
2415 3538 7.017319 AGGCCTATAATATGTGTAGTTTCCC 57.983 40.000 1.29 0.00 0.00 3.97
2417 3540 8.813951 AGGTAGGCCTATAATATGTGTAGTTTC 58.186 37.037 17.38 0.00 44.90 2.78
2440 3563 6.814954 AGGATGATGTACAAAGACATAGGT 57.185 37.500 0.00 0.00 40.18 3.08
2447 6145 6.763135 GCTTCACATAGGATGATGTACAAAGA 59.237 38.462 0.00 0.00 37.99 2.52
2463 8053 9.944376 AGTTAGAGTTCAATTAAGCTTCACATA 57.056 29.630 0.00 0.00 0.00 2.29
2528 8120 9.451002 TGTTAGTTTTGATTAATCGGTCCAATA 57.549 29.630 10.80 0.00 0.00 1.90
2645 8239 5.298276 CAGACGATCTTCCTTAGCTTAGAGT 59.702 44.000 0.16 0.00 0.00 3.24
2650 8244 4.679372 GCTTCAGACGATCTTCCTTAGCTT 60.679 45.833 0.00 0.00 0.00 3.74
2654 8248 4.686972 CATGCTTCAGACGATCTTCCTTA 58.313 43.478 0.00 0.00 0.00 2.69
2679 8273 7.436376 CGACTATCTTGAGTTCTTATGATTGCA 59.564 37.037 0.00 0.00 0.00 4.08
2774 8368 6.160684 ACTTATACACATACAAGCACACGAA 58.839 36.000 0.00 0.00 0.00 3.85
2777 8371 6.479001 CCCTACTTATACACATACAAGCACAC 59.521 42.308 0.00 0.00 0.00 3.82
2801 8395 1.002502 GGGTAGGGTGTGTGCTTCC 60.003 63.158 0.00 0.00 0.00 3.46
2806 8400 0.476771 ACAAAGGGGTAGGGTGTGTG 59.523 55.000 0.00 0.00 0.00 3.82
2881 8624 0.605319 TCGTGACTTGATTGGTGGCC 60.605 55.000 0.00 0.00 0.00 5.36
2919 8663 8.085296 ACTAATATCTAGCCGATTGACTCAAAG 58.915 37.037 0.00 0.00 33.48 2.77
2921 8665 7.230712 TGACTAATATCTAGCCGATTGACTCAA 59.769 37.037 0.00 0.00 33.48 3.02
2993 8738 5.707298 CCTAGCTTTCTTGGACTTCATGAAA 59.293 40.000 9.88 0.00 43.05 2.69
2999 8744 6.465084 TCTAAACCTAGCTTTCTTGGACTTC 58.535 40.000 0.00 0.00 38.38 3.01
3015 8760 0.328258 AAGCGGGCACATCTAAACCT 59.672 50.000 0.00 0.00 0.00 3.50
3017 8762 1.165270 ACAAGCGGGCACATCTAAAC 58.835 50.000 0.00 0.00 0.00 2.01
3060 10211 5.308825 AGGGTCAAGTGACTGAATTTACAG 58.691 41.667 11.07 0.00 44.20 2.74
3083 10234 4.444306 CCTTTTATCGTCAGGGCTGGATAA 60.444 45.833 0.00 0.00 31.49 1.75
3086 10237 1.209504 CCTTTTATCGTCAGGGCTGGA 59.790 52.381 0.00 0.00 0.00 3.86
3099 10250 8.207545 TGTATTGCCAAAACTTTGTCCTTTTAT 58.792 29.630 1.76 0.00 36.45 1.40
3140 10291 9.465985 TTGCATTTATCATGTAAATATGCTGTG 57.534 29.630 17.46 8.17 0.00 3.66
3171 10322 4.978083 TTTACTTTTTGTGCACGGGTTA 57.022 36.364 13.13 0.00 0.00 2.85
3173 10324 3.491792 CCATTTACTTTTTGTGCACGGGT 60.492 43.478 13.13 8.54 0.00 5.28
3193 10345 6.161855 TGTAAATATGTTGTGTTTTGGCCA 57.838 33.333 0.00 0.00 0.00 5.36
3258 10410 1.164041 ACGGAAGTTTGGCCTTGTCG 61.164 55.000 3.32 1.53 46.40 4.35
3260 10412 0.106918 TCACGGAAGTTTGGCCTTGT 60.107 50.000 3.32 0.00 46.40 3.16
3290 10442 3.995669 CACACGTCAACCACCGCG 61.996 66.667 0.00 0.00 0.00 6.46
3299 10453 4.808895 GCCAGATTTCATATACACACGTCA 59.191 41.667 0.00 0.00 0.00 4.35
3338 10492 3.058432 CGTGCTTGATCATCCATCCAATC 60.058 47.826 0.00 0.00 0.00 2.67
3371 11001 5.393866 ACCCAAAACCAATAGAGTTGATGT 58.606 37.500 0.00 0.00 0.00 3.06
3378 11008 4.524328 AGAAGCAACCCAAAACCAATAGAG 59.476 41.667 0.00 0.00 0.00 2.43
3382 11012 3.454082 TGAAGAAGCAACCCAAAACCAAT 59.546 39.130 0.00 0.00 0.00 3.16
3408 11038 7.067615 TCTCTAGAAGCACCATGTTAGTCTAAG 59.932 40.741 0.00 0.00 0.00 2.18
3433 11063 5.578727 CACTCAACTAAGCTCCTTGTGTATC 59.421 44.000 0.00 0.00 0.00 2.24
3463 11093 3.562609 GCCCCCACTCAGTTTATTACCAA 60.563 47.826 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.