Multiple sequence alignment - TraesCS5A01G028200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G028200 chr5A 100.000 2474 0 0 1 2474 24150821 24148348 0.000000e+00 4569.0
1 TraesCS5A01G028200 chr5A 91.579 855 27 12 1648 2474 51714544 51715381 0.000000e+00 1138.0
2 TraesCS5A01G028200 chr5A 85.731 862 61 25 787 1595 23919543 23918691 0.000000e+00 854.0
3 TraesCS5A01G028200 chr5A 83.660 612 60 20 1002 1594 24184969 24185559 7.780000e-150 540.0
4 TraesCS5A01G028200 chr5A 86.849 365 26 7 787 1149 23941761 23942105 2.980000e-104 388.0
5 TraesCS5A01G028200 chr5A 87.847 288 29 6 20 304 391955836 391955552 1.420000e-87 333.0
6 TraesCS5A01G028200 chr5D 92.234 1365 74 18 301 1647 35500603 35499253 0.000000e+00 1905.0
7 TraesCS5A01G028200 chr5D 89.176 1044 91 15 562 1594 35286874 35285842 0.000000e+00 1282.0
8 TraesCS5A01G028200 chr5D 81.518 1001 98 50 647 1594 35553243 35554209 0.000000e+00 743.0
9 TraesCS5A01G028200 chr5D 86.719 256 26 7 741 993 35329669 35329919 6.740000e-71 278.0
10 TraesCS5A01G028200 chr5D 100.000 28 0 0 1567 1594 35486895 35486922 4.000000e-03 52.8
11 TraesCS5A01G028200 chrUn 90.320 1095 98 5 559 1647 266220286 266219194 0.000000e+00 1428.0
12 TraesCS5A01G028200 chrUn 90.320 1095 98 5 559 1647 266247081 266245989 0.000000e+00 1428.0
13 TraesCS5A01G028200 chrUn 88.268 716 56 15 700 1396 440671519 440670813 0.000000e+00 832.0
14 TraesCS5A01G028200 chrUn 91.837 539 24 7 1938 2474 265349918 265349398 0.000000e+00 734.0
15 TraesCS5A01G028200 chrUn 87.282 574 39 16 1644 2206 22228055 22227505 2.090000e-175 625.0
16 TraesCS5A01G028200 chrUn 93.651 252 14 1 1398 1647 271386826 271387077 2.320000e-100 375.0
17 TraesCS5A01G028200 chrUn 93.651 252 14 1 1398 1647 271394972 271395223 2.320000e-100 375.0
18 TraesCS5A01G028200 chrUn 93.651 252 14 1 1398 1647 428762914 428763165 2.320000e-100 375.0
19 TraesCS5A01G028200 chrUn 87.500 224 22 2 824 1041 274029214 274028991 1.140000e-63 254.0
20 TraesCS5A01G028200 chr3A 92.407 856 21 14 1648 2474 887736 888576 0.000000e+00 1181.0
21 TraesCS5A01G028200 chr6A 92.182 857 24 11 1648 2474 573516561 573517404 0.000000e+00 1171.0
22 TraesCS5A01G028200 chr1A 91.967 859 25 15 1648 2474 556812910 556812064 0.000000e+00 1164.0
23 TraesCS5A01G028200 chr1A 89.675 862 45 14 1648 2474 3681329 3682181 0.000000e+00 1059.0
24 TraesCS5A01G028200 chr1A 90.334 569 27 7 1648 2206 23212157 23212707 0.000000e+00 721.0
25 TraesCS5A01G028200 chr1A 84.675 385 46 5 1688 2059 546957273 546957657 3.000000e-99 372.0
26 TraesCS5A01G028200 chr1A 88.502 287 29 4 20 304 430206368 430206652 6.550000e-91 344.0
27 TraesCS5A01G028200 chr5B 91.026 858 34 14 1646 2474 8176178 8177021 0.000000e+00 1118.0
28 TraesCS5A01G028200 chr5B 84.109 516 52 18 1095 1594 26609987 26609486 2.880000e-129 472.0
29 TraesCS5A01G028200 chr2B 90.487 862 36 16 1648 2474 155173794 155172944 0.000000e+00 1096.0
30 TraesCS5A01G028200 chr2B 87.748 555 31 16 1655 2206 59230344 59230864 4.520000e-172 614.0
31 TraesCS5A01G028200 chr7B 90.454 859 38 24 1647 2474 64408088 64407243 0.000000e+00 1092.0
32 TraesCS5A01G028200 chr7B 86.866 868 44 24 1647 2474 696595967 696596804 0.000000e+00 907.0
33 TraesCS5A01G028200 chr3B 90.432 857 35 11 1647 2474 685231041 685231879 0.000000e+00 1085.0
34 TraesCS5A01G028200 chr3B 88.153 287 30 4 20 304 377885190 377884906 3.050000e-89 339.0
35 TraesCS5A01G028200 chr6B 91.626 406 24 3 1648 2043 693817583 693817988 1.000000e-153 553.0
36 TraesCS5A01G028200 chr6B 83.285 347 56 2 1648 1993 632192123 632192468 3.970000e-83 318.0
37 TraesCS5A01G028200 chr7A 82.362 618 30 22 1643 2225 56235389 56234816 4.820000e-127 464.0
38 TraesCS5A01G028200 chr7A 95.122 287 14 0 1153 1439 3945516 3945802 1.040000e-123 453.0
39 TraesCS5A01G028200 chr7A 88.153 287 25 6 20 304 363999748 364000027 1.420000e-87 333.0
40 TraesCS5A01G028200 chr2A 95.018 281 14 0 1153 1433 734773572 734773852 2.260000e-120 442.0
41 TraesCS5A01G028200 chr2A 87.000 300 33 6 8 304 63125715 63126011 1.420000e-87 333.0
42 TraesCS5A01G028200 chr2A 80.332 422 68 7 1645 2052 723585745 723586165 3.090000e-79 305.0
43 TraesCS5A01G028200 chr1D 80.148 539 79 19 1648 2160 491640399 491640935 6.460000e-101 377.0
44 TraesCS5A01G028200 chr3D 89.655 290 25 4 20 304 515083457 515083168 5.030000e-97 364.0
45 TraesCS5A01G028200 chr7D 89.437 284 25 3 20 303 124174336 124174058 1.090000e-93 353.0
46 TraesCS5A01G028200 chr4A 87.805 287 31 4 20 304 573311511 573311795 1.420000e-87 333.0
47 TraesCS5A01G028200 chr6D 87.847 288 26 6 20 304 454035747 454035466 1.830000e-86 329.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G028200 chr5A 24148348 24150821 2473 True 4569 4569 100.000 1 2474 1 chr5A.!!$R2 2473
1 TraesCS5A01G028200 chr5A 51714544 51715381 837 False 1138 1138 91.579 1648 2474 1 chr5A.!!$F3 826
2 TraesCS5A01G028200 chr5A 23918691 23919543 852 True 854 854 85.731 787 1595 1 chr5A.!!$R1 808
3 TraesCS5A01G028200 chr5A 24184969 24185559 590 False 540 540 83.660 1002 1594 1 chr5A.!!$F2 592
4 TraesCS5A01G028200 chr5D 35499253 35500603 1350 True 1905 1905 92.234 301 1647 1 chr5D.!!$R2 1346
5 TraesCS5A01G028200 chr5D 35285842 35286874 1032 True 1282 1282 89.176 562 1594 1 chr5D.!!$R1 1032
6 TraesCS5A01G028200 chr5D 35553243 35554209 966 False 743 743 81.518 647 1594 1 chr5D.!!$F3 947
7 TraesCS5A01G028200 chrUn 266219194 266220286 1092 True 1428 1428 90.320 559 1647 1 chrUn.!!$R3 1088
8 TraesCS5A01G028200 chrUn 266245989 266247081 1092 True 1428 1428 90.320 559 1647 1 chrUn.!!$R4 1088
9 TraesCS5A01G028200 chrUn 440670813 440671519 706 True 832 832 88.268 700 1396 1 chrUn.!!$R6 696
10 TraesCS5A01G028200 chrUn 265349398 265349918 520 True 734 734 91.837 1938 2474 1 chrUn.!!$R2 536
11 TraesCS5A01G028200 chrUn 22227505 22228055 550 True 625 625 87.282 1644 2206 1 chrUn.!!$R1 562
12 TraesCS5A01G028200 chr3A 887736 888576 840 False 1181 1181 92.407 1648 2474 1 chr3A.!!$F1 826
13 TraesCS5A01G028200 chr6A 573516561 573517404 843 False 1171 1171 92.182 1648 2474 1 chr6A.!!$F1 826
14 TraesCS5A01G028200 chr1A 556812064 556812910 846 True 1164 1164 91.967 1648 2474 1 chr1A.!!$R1 826
15 TraesCS5A01G028200 chr1A 3681329 3682181 852 False 1059 1059 89.675 1648 2474 1 chr1A.!!$F1 826
16 TraesCS5A01G028200 chr1A 23212157 23212707 550 False 721 721 90.334 1648 2206 1 chr1A.!!$F2 558
17 TraesCS5A01G028200 chr5B 8176178 8177021 843 False 1118 1118 91.026 1646 2474 1 chr5B.!!$F1 828
18 TraesCS5A01G028200 chr5B 26609486 26609987 501 True 472 472 84.109 1095 1594 1 chr5B.!!$R1 499
19 TraesCS5A01G028200 chr2B 155172944 155173794 850 True 1096 1096 90.487 1648 2474 1 chr2B.!!$R1 826
20 TraesCS5A01G028200 chr2B 59230344 59230864 520 False 614 614 87.748 1655 2206 1 chr2B.!!$F1 551
21 TraesCS5A01G028200 chr7B 64407243 64408088 845 True 1092 1092 90.454 1647 2474 1 chr7B.!!$R1 827
22 TraesCS5A01G028200 chr7B 696595967 696596804 837 False 907 907 86.866 1647 2474 1 chr7B.!!$F1 827
23 TraesCS5A01G028200 chr3B 685231041 685231879 838 False 1085 1085 90.432 1647 2474 1 chr3B.!!$F1 827
24 TraesCS5A01G028200 chr7A 56234816 56235389 573 True 464 464 82.362 1643 2225 1 chr7A.!!$R1 582
25 TraesCS5A01G028200 chr1D 491640399 491640935 536 False 377 377 80.148 1648 2160 1 chr1D.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 0.032952 AGAAAAGACCTACACGCGCA 59.967 50.0 5.73 0.0 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1490 1591 0.039437 CTGACGCTGTGACGGTTAGT 60.039 55.0 0.0 0.0 37.37 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.667539 TTTTTGACTGGATTGTTGTTGGA 57.332 34.783 0.00 0.00 0.00 3.53
27 28 5.667539 TTTTGACTGGATTGTTGTTGGAA 57.332 34.783 0.00 0.00 0.00 3.53
28 29 5.867903 TTTGACTGGATTGTTGTTGGAAT 57.132 34.783 0.00 0.00 0.00 3.01
29 30 5.867903 TTGACTGGATTGTTGTTGGAATT 57.132 34.783 0.00 0.00 0.00 2.17
30 31 5.867903 TGACTGGATTGTTGTTGGAATTT 57.132 34.783 0.00 0.00 0.00 1.82
31 32 5.599732 TGACTGGATTGTTGTTGGAATTTG 58.400 37.500 0.00 0.00 0.00 2.32
32 33 5.128499 TGACTGGATTGTTGTTGGAATTTGT 59.872 36.000 0.00 0.00 0.00 2.83
33 34 5.988287 ACTGGATTGTTGTTGGAATTTGTT 58.012 33.333 0.00 0.00 0.00 2.83
34 35 7.118496 ACTGGATTGTTGTTGGAATTTGTTA 57.882 32.000 0.00 0.00 0.00 2.41
35 36 7.209475 ACTGGATTGTTGTTGGAATTTGTTAG 58.791 34.615 0.00 0.00 0.00 2.34
36 37 7.118496 TGGATTGTTGTTGGAATTTGTTAGT 57.882 32.000 0.00 0.00 0.00 2.24
37 38 8.239038 TGGATTGTTGTTGGAATTTGTTAGTA 57.761 30.769 0.00 0.00 0.00 1.82
38 39 8.356657 TGGATTGTTGTTGGAATTTGTTAGTAG 58.643 33.333 0.00 0.00 0.00 2.57
39 40 8.357402 GGATTGTTGTTGGAATTTGTTAGTAGT 58.643 33.333 0.00 0.00 0.00 2.73
40 41 9.394477 GATTGTTGTTGGAATTTGTTAGTAGTC 57.606 33.333 0.00 0.00 0.00 2.59
41 42 7.266922 TGTTGTTGGAATTTGTTAGTAGTCC 57.733 36.000 0.00 0.00 0.00 3.85
42 43 7.057894 TGTTGTTGGAATTTGTTAGTAGTCCT 58.942 34.615 0.00 0.00 0.00 3.85
43 44 7.558444 TGTTGTTGGAATTTGTTAGTAGTCCTT 59.442 33.333 0.00 0.00 0.00 3.36
44 45 8.410912 GTTGTTGGAATTTGTTAGTAGTCCTTT 58.589 33.333 0.00 0.00 0.00 3.11
45 46 7.936584 TGTTGGAATTTGTTAGTAGTCCTTTG 58.063 34.615 0.00 0.00 0.00 2.77
46 47 7.013846 TGTTGGAATTTGTTAGTAGTCCTTTGG 59.986 37.037 0.00 0.00 0.00 3.28
47 48 6.607019 TGGAATTTGTTAGTAGTCCTTTGGT 58.393 36.000 0.00 0.00 0.00 3.67
48 49 6.713450 TGGAATTTGTTAGTAGTCCTTTGGTC 59.287 38.462 0.00 0.00 0.00 4.02
49 50 6.150641 GGAATTTGTTAGTAGTCCTTTGGTCC 59.849 42.308 0.00 0.00 0.00 4.46
50 51 5.633655 TTTGTTAGTAGTCCTTTGGTCCA 57.366 39.130 0.00 0.00 0.00 4.02
51 52 5.633655 TTGTTAGTAGTCCTTTGGTCCAA 57.366 39.130 0.00 0.00 0.00 3.53
52 53 5.633655 TGTTAGTAGTCCTTTGGTCCAAA 57.366 39.130 16.26 16.26 0.00 3.28
54 55 3.141767 AGTAGTCCTTTGGTCCAAAGC 57.858 47.619 31.35 21.42 46.44 3.51
55 56 2.160205 GTAGTCCTTTGGTCCAAAGCC 58.840 52.381 31.35 24.14 46.44 4.35
56 57 0.178961 AGTCCTTTGGTCCAAAGCCC 60.179 55.000 31.35 23.85 46.44 5.19
57 58 0.469144 GTCCTTTGGTCCAAAGCCCA 60.469 55.000 31.35 18.04 46.44 5.36
58 59 0.263172 TCCTTTGGTCCAAAGCCCAA 59.737 50.000 31.35 17.05 46.44 4.12
59 60 0.392706 CCTTTGGTCCAAAGCCCAAC 59.607 55.000 31.35 0.00 46.44 3.77
60 61 1.413118 CTTTGGTCCAAAGCCCAACT 58.587 50.000 27.36 0.00 43.07 3.16
61 62 2.593026 CTTTGGTCCAAAGCCCAACTA 58.407 47.619 27.36 0.00 43.07 2.24
62 63 2.757894 TTGGTCCAAAGCCCAACTAA 57.242 45.000 0.40 0.00 35.84 2.24
63 64 2.757894 TGGTCCAAAGCCCAACTAAA 57.242 45.000 0.00 0.00 0.00 1.85
64 65 3.033659 TGGTCCAAAGCCCAACTAAAA 57.966 42.857 0.00 0.00 0.00 1.52
65 66 3.582164 TGGTCCAAAGCCCAACTAAAAT 58.418 40.909 0.00 0.00 0.00 1.82
66 67 3.970640 TGGTCCAAAGCCCAACTAAAATT 59.029 39.130 0.00 0.00 0.00 1.82
67 68 4.039852 TGGTCCAAAGCCCAACTAAAATTC 59.960 41.667 0.00 0.00 0.00 2.17
68 69 4.283467 GGTCCAAAGCCCAACTAAAATTCT 59.717 41.667 0.00 0.00 0.00 2.40
69 70 5.230182 GTCCAAAGCCCAACTAAAATTCTG 58.770 41.667 0.00 0.00 0.00 3.02
70 71 5.010617 GTCCAAAGCCCAACTAAAATTCTGA 59.989 40.000 0.00 0.00 0.00 3.27
71 72 5.600484 TCCAAAGCCCAACTAAAATTCTGAA 59.400 36.000 0.00 0.00 0.00 3.02
72 73 6.098982 TCCAAAGCCCAACTAAAATTCTGAAA 59.901 34.615 0.00 0.00 0.00 2.69
73 74 6.936335 CCAAAGCCCAACTAAAATTCTGAAAT 59.064 34.615 0.00 0.00 0.00 2.17
74 75 7.445096 CCAAAGCCCAACTAAAATTCTGAAATT 59.555 33.333 0.00 0.00 36.64 1.82
75 76 8.498358 CAAAGCCCAACTAAAATTCTGAAATTC 58.502 33.333 0.00 0.00 33.93 2.17
76 77 7.544804 AGCCCAACTAAAATTCTGAAATTCT 57.455 32.000 0.00 0.00 33.93 2.40
77 78 7.606349 AGCCCAACTAAAATTCTGAAATTCTC 58.394 34.615 0.00 0.00 33.93 2.87
78 79 7.452813 AGCCCAACTAAAATTCTGAAATTCTCT 59.547 33.333 0.00 0.00 33.93 3.10
79 80 8.090831 GCCCAACTAAAATTCTGAAATTCTCTT 58.909 33.333 0.00 0.00 33.93 2.85
80 81 9.415544 CCCAACTAAAATTCTGAAATTCTCTTG 57.584 33.333 0.00 0.00 33.93 3.02
81 82 9.415544 CCAACTAAAATTCTGAAATTCTCTTGG 57.584 33.333 0.00 1.19 33.93 3.61
82 83 9.415544 CAACTAAAATTCTGAAATTCTCTTGGG 57.584 33.333 0.00 0.00 33.93 4.12
83 84 7.606349 ACTAAAATTCTGAAATTCTCTTGGGC 58.394 34.615 0.00 0.00 33.93 5.36
84 85 5.411831 AAATTCTGAAATTCTCTTGGGCC 57.588 39.130 0.00 0.00 33.93 5.80
85 86 3.524095 TTCTGAAATTCTCTTGGGCCA 57.476 42.857 0.00 0.00 0.00 5.36
86 87 3.744940 TCTGAAATTCTCTTGGGCCAT 57.255 42.857 7.26 0.00 0.00 4.40
87 88 4.051661 TCTGAAATTCTCTTGGGCCATT 57.948 40.909 7.26 0.00 0.00 3.16
88 89 4.019174 TCTGAAATTCTCTTGGGCCATTC 58.981 43.478 7.26 6.97 0.00 2.67
89 90 3.765511 CTGAAATTCTCTTGGGCCATTCA 59.234 43.478 7.26 11.69 0.00 2.57
90 91 4.355549 TGAAATTCTCTTGGGCCATTCAT 58.644 39.130 7.26 0.00 0.00 2.57
91 92 4.160814 TGAAATTCTCTTGGGCCATTCATG 59.839 41.667 7.26 0.00 0.00 3.07
92 93 1.477553 TTCTCTTGGGCCATTCATGC 58.522 50.000 7.26 0.00 0.00 4.06
93 94 0.332293 TCTCTTGGGCCATTCATGCA 59.668 50.000 7.26 0.00 0.00 3.96
94 95 1.063492 TCTCTTGGGCCATTCATGCAT 60.063 47.619 7.26 0.00 0.00 3.96
95 96 1.068588 CTCTTGGGCCATTCATGCATG 59.931 52.381 21.07 21.07 0.00 4.06
96 97 0.105964 CTTGGGCCATTCATGCATGG 59.894 55.000 25.97 18.92 46.04 3.66
102 103 1.934589 CCATTCATGCATGGCTTGTG 58.065 50.000 25.97 16.05 37.51 3.33
103 104 1.478916 CCATTCATGCATGGCTTGTGA 59.521 47.619 25.97 3.07 37.51 3.58
104 105 2.481276 CCATTCATGCATGGCTTGTGAG 60.481 50.000 25.97 8.03 37.51 3.51
105 106 1.913778 TTCATGCATGGCTTGTGAGT 58.086 45.000 25.97 0.00 35.60 3.41
106 107 1.170442 TCATGCATGGCTTGTGAGTG 58.830 50.000 25.97 0.00 35.60 3.51
107 108 0.172578 CATGCATGGCTTGTGAGTGG 59.827 55.000 19.40 0.00 0.00 4.00
108 109 0.251474 ATGCATGGCTTGTGAGTGGT 60.251 50.000 0.00 0.00 0.00 4.16
109 110 1.174078 TGCATGGCTTGTGAGTGGTG 61.174 55.000 2.12 0.00 0.00 4.17
110 111 1.174712 GCATGGCTTGTGAGTGGTGT 61.175 55.000 2.12 0.00 0.00 4.16
111 112 0.594602 CATGGCTTGTGAGTGGTGTG 59.405 55.000 0.00 0.00 0.00 3.82
112 113 0.473755 ATGGCTTGTGAGTGGTGTGA 59.526 50.000 0.00 0.00 0.00 3.58
113 114 0.179048 TGGCTTGTGAGTGGTGTGAG 60.179 55.000 0.00 0.00 0.00 3.51
114 115 0.179045 GGCTTGTGAGTGGTGTGAGT 60.179 55.000 0.00 0.00 0.00 3.41
115 116 0.940126 GCTTGTGAGTGGTGTGAGTG 59.060 55.000 0.00 0.00 0.00 3.51
116 117 1.586422 CTTGTGAGTGGTGTGAGTGG 58.414 55.000 0.00 0.00 0.00 4.00
117 118 0.180171 TTGTGAGTGGTGTGAGTGGG 59.820 55.000 0.00 0.00 0.00 4.61
118 119 0.689412 TGTGAGTGGTGTGAGTGGGA 60.689 55.000 0.00 0.00 0.00 4.37
119 120 0.687354 GTGAGTGGTGTGAGTGGGAT 59.313 55.000 0.00 0.00 0.00 3.85
120 121 1.072331 GTGAGTGGTGTGAGTGGGATT 59.928 52.381 0.00 0.00 0.00 3.01
121 122 2.301870 GTGAGTGGTGTGAGTGGGATTA 59.698 50.000 0.00 0.00 0.00 1.75
122 123 2.976185 TGAGTGGTGTGAGTGGGATTAA 59.024 45.455 0.00 0.00 0.00 1.40
123 124 3.392947 TGAGTGGTGTGAGTGGGATTAAA 59.607 43.478 0.00 0.00 0.00 1.52
124 125 4.003648 GAGTGGTGTGAGTGGGATTAAAG 58.996 47.826 0.00 0.00 0.00 1.85
125 126 3.394606 AGTGGTGTGAGTGGGATTAAAGT 59.605 43.478 0.00 0.00 0.00 2.66
126 127 4.141251 AGTGGTGTGAGTGGGATTAAAGTT 60.141 41.667 0.00 0.00 0.00 2.66
127 128 4.583073 GTGGTGTGAGTGGGATTAAAGTTT 59.417 41.667 0.00 0.00 0.00 2.66
128 129 5.766174 GTGGTGTGAGTGGGATTAAAGTTTA 59.234 40.000 0.00 0.00 0.00 2.01
129 130 6.001460 TGGTGTGAGTGGGATTAAAGTTTAG 58.999 40.000 0.00 0.00 0.00 1.85
130 131 6.002082 GGTGTGAGTGGGATTAAAGTTTAGT 58.998 40.000 0.00 0.00 0.00 2.24
131 132 6.148976 GGTGTGAGTGGGATTAAAGTTTAGTC 59.851 42.308 9.12 9.12 0.00 2.59
132 133 6.148976 GTGTGAGTGGGATTAAAGTTTAGTCC 59.851 42.308 22.76 22.76 0.00 3.85
137 138 4.275810 GGGATTAAAGTTTAGTCCCACCC 58.724 47.826 34.83 18.80 46.28 4.61
138 139 4.275810 GGATTAAAGTTTAGTCCCACCCC 58.724 47.826 21.08 1.81 0.00 4.95
139 140 3.421919 TTAAAGTTTAGTCCCACCCCG 57.578 47.619 0.00 0.00 0.00 5.73
140 141 0.402887 AAAGTTTAGTCCCACCCCGG 59.597 55.000 0.00 0.00 0.00 5.73
141 142 0.474273 AAGTTTAGTCCCACCCCGGA 60.474 55.000 0.73 0.00 36.56 5.14
142 143 0.474273 AGTTTAGTCCCACCCCGGAA 60.474 55.000 0.73 0.00 36.56 4.30
143 144 0.035725 GTTTAGTCCCACCCCGGAAG 60.036 60.000 0.73 0.00 36.56 3.46
144 145 0.474273 TTTAGTCCCACCCCGGAAGT 60.474 55.000 0.73 0.00 36.56 3.01
145 146 0.474273 TTAGTCCCACCCCGGAAGTT 60.474 55.000 0.73 0.00 36.56 2.66
146 147 1.196104 TAGTCCCACCCCGGAAGTTG 61.196 60.000 0.73 0.00 36.56 3.16
147 148 2.122324 TCCCACCCCGGAAGTTGA 60.122 61.111 0.73 0.00 36.56 3.18
148 149 2.221299 TCCCACCCCGGAAGTTGAG 61.221 63.158 0.73 0.00 36.56 3.02
149 150 2.526046 CCCACCCCGGAAGTTGAGT 61.526 63.158 0.73 0.00 36.56 3.41
150 151 1.302511 CCACCCCGGAAGTTGAGTG 60.303 63.158 0.73 0.00 36.56 3.51
151 152 1.752198 CACCCCGGAAGTTGAGTGA 59.248 57.895 0.73 0.00 0.00 3.41
152 153 0.320771 CACCCCGGAAGTTGAGTGAG 60.321 60.000 0.73 0.00 0.00 3.51
153 154 0.471211 ACCCCGGAAGTTGAGTGAGA 60.471 55.000 0.73 0.00 0.00 3.27
154 155 0.037232 CCCCGGAAGTTGAGTGAGAC 60.037 60.000 0.73 0.00 0.00 3.36
155 156 0.969894 CCCGGAAGTTGAGTGAGACT 59.030 55.000 0.73 0.00 0.00 3.24
156 157 1.344763 CCCGGAAGTTGAGTGAGACTT 59.655 52.381 0.73 0.00 38.72 3.01
157 158 2.408050 CCGGAAGTTGAGTGAGACTTG 58.592 52.381 0.00 0.00 36.31 3.16
158 159 1.795286 CGGAAGTTGAGTGAGACTTGC 59.205 52.381 0.00 0.00 39.79 4.01
159 160 2.803133 CGGAAGTTGAGTGAGACTTGCA 60.803 50.000 8.15 0.00 42.24 4.08
160 161 2.545946 GGAAGTTGAGTGAGACTTGCAC 59.454 50.000 3.39 0.00 41.88 4.57
161 162 2.246719 AGTTGAGTGAGACTTGCACC 57.753 50.000 0.00 0.00 36.95 5.01
162 163 1.765314 AGTTGAGTGAGACTTGCACCT 59.235 47.619 0.00 0.00 36.95 4.00
163 164 2.139118 GTTGAGTGAGACTTGCACCTC 58.861 52.381 0.00 0.00 36.95 3.85
164 165 1.709578 TGAGTGAGACTTGCACCTCT 58.290 50.000 10.22 2.38 36.95 3.69
165 166 2.042464 TGAGTGAGACTTGCACCTCTT 58.958 47.619 10.22 1.32 36.95 2.85
166 167 2.435805 TGAGTGAGACTTGCACCTCTTT 59.564 45.455 10.22 1.05 36.95 2.52
167 168 3.641436 TGAGTGAGACTTGCACCTCTTTA 59.359 43.478 10.22 0.00 36.95 1.85
168 169 4.284490 TGAGTGAGACTTGCACCTCTTTAT 59.716 41.667 10.22 0.00 36.95 1.40
169 170 5.480422 TGAGTGAGACTTGCACCTCTTTATA 59.520 40.000 10.22 0.00 36.95 0.98
170 171 6.014584 TGAGTGAGACTTGCACCTCTTTATAA 60.015 38.462 10.22 0.00 36.95 0.98
171 172 6.402222 AGTGAGACTTGCACCTCTTTATAAG 58.598 40.000 10.22 0.00 36.95 1.73
172 173 5.582665 GTGAGACTTGCACCTCTTTATAAGG 59.417 44.000 10.22 0.00 39.96 2.69
183 184 6.800072 CCTCTTTATAAGGTGAGGTCTTCT 57.200 41.667 16.62 0.00 40.69 2.85
184 185 7.899648 CCTCTTTATAAGGTGAGGTCTTCTA 57.100 40.000 16.62 0.00 40.69 2.10
185 186 8.485578 CCTCTTTATAAGGTGAGGTCTTCTAT 57.514 38.462 16.62 0.00 40.69 1.98
186 187 8.581578 CCTCTTTATAAGGTGAGGTCTTCTATC 58.418 40.741 16.62 0.00 40.69 2.08
187 188 9.137459 CTCTTTATAAGGTGAGGTCTTCTATCA 57.863 37.037 0.00 0.00 0.00 2.15
188 189 8.915036 TCTTTATAAGGTGAGGTCTTCTATCAC 58.085 37.037 0.00 0.00 42.07 3.06
189 190 8.840200 TTTATAAGGTGAGGTCTTCTATCACT 57.160 34.615 4.73 0.00 42.36 3.41
190 191 8.840200 TTATAAGGTGAGGTCTTCTATCACTT 57.160 34.615 4.73 0.00 42.36 3.16
191 192 5.413309 AAGGTGAGGTCTTCTATCACTTG 57.587 43.478 4.73 0.00 42.36 3.16
192 193 4.421131 AGGTGAGGTCTTCTATCACTTGT 58.579 43.478 4.73 0.00 42.36 3.16
193 194 5.580998 AGGTGAGGTCTTCTATCACTTGTA 58.419 41.667 4.73 0.00 42.36 2.41
194 195 6.017192 AGGTGAGGTCTTCTATCACTTGTAA 58.983 40.000 4.73 0.00 42.36 2.41
195 196 6.153680 AGGTGAGGTCTTCTATCACTTGTAAG 59.846 42.308 4.73 0.00 42.36 2.34
196 197 6.153000 GGTGAGGTCTTCTATCACTTGTAAGA 59.847 42.308 4.73 0.00 42.36 2.10
197 198 7.254852 GTGAGGTCTTCTATCACTTGTAAGAG 58.745 42.308 0.00 0.00 40.14 2.85
198 199 6.127591 TGAGGTCTTCTATCACTTGTAAGAGC 60.128 42.308 0.00 0.00 42.25 4.09
199 200 5.717178 AGGTCTTCTATCACTTGTAAGAGCA 59.283 40.000 13.17 0.00 43.60 4.26
200 201 6.382570 AGGTCTTCTATCACTTGTAAGAGCAT 59.617 38.462 13.17 0.00 43.60 3.79
201 202 6.478344 GGTCTTCTATCACTTGTAAGAGCATG 59.522 42.308 0.00 0.00 41.79 4.06
202 203 7.261325 GTCTTCTATCACTTGTAAGAGCATGA 58.739 38.462 0.00 0.00 0.00 3.07
203 204 7.434897 GTCTTCTATCACTTGTAAGAGCATGAG 59.565 40.741 0.00 0.00 0.00 2.90
204 205 7.340487 TCTTCTATCACTTGTAAGAGCATGAGA 59.660 37.037 0.00 0.00 0.00 3.27
205 206 7.410120 TCTATCACTTGTAAGAGCATGAGAA 57.590 36.000 0.00 0.00 0.00 2.87
206 207 7.487484 TCTATCACTTGTAAGAGCATGAGAAG 58.513 38.462 0.00 0.00 0.00 2.85
207 208 5.728637 TCACTTGTAAGAGCATGAGAAGA 57.271 39.130 0.00 0.00 0.00 2.87
208 209 6.101650 TCACTTGTAAGAGCATGAGAAGAA 57.898 37.500 0.00 0.00 0.00 2.52
209 210 6.524734 TCACTTGTAAGAGCATGAGAAGAAA 58.475 36.000 0.00 0.00 0.00 2.52
210 211 6.992123 TCACTTGTAAGAGCATGAGAAGAAAA 59.008 34.615 0.00 0.00 0.00 2.29
211 212 7.172190 TCACTTGTAAGAGCATGAGAAGAAAAG 59.828 37.037 0.00 0.00 0.00 2.27
212 213 7.172190 CACTTGTAAGAGCATGAGAAGAAAAGA 59.828 37.037 0.00 0.00 0.00 2.52
213 214 7.172361 ACTTGTAAGAGCATGAGAAGAAAAGAC 59.828 37.037 0.00 0.00 0.00 3.01
214 215 5.934625 TGTAAGAGCATGAGAAGAAAAGACC 59.065 40.000 0.00 0.00 0.00 3.85
215 216 4.906747 AGAGCATGAGAAGAAAAGACCT 57.093 40.909 0.00 0.00 0.00 3.85
216 217 6.365970 AAGAGCATGAGAAGAAAAGACCTA 57.634 37.500 0.00 0.00 0.00 3.08
217 218 5.729510 AGAGCATGAGAAGAAAAGACCTAC 58.270 41.667 0.00 0.00 0.00 3.18
218 219 5.247110 AGAGCATGAGAAGAAAAGACCTACA 59.753 40.000 0.00 0.00 0.00 2.74
219 220 5.241662 AGCATGAGAAGAAAAGACCTACAC 58.758 41.667 0.00 0.00 0.00 2.90
220 221 4.092091 GCATGAGAAGAAAAGACCTACACG 59.908 45.833 0.00 0.00 0.00 4.49
221 222 3.650139 TGAGAAGAAAAGACCTACACGC 58.350 45.455 0.00 0.00 0.00 5.34
222 223 2.662156 GAGAAGAAAAGACCTACACGCG 59.338 50.000 3.53 3.53 0.00 6.01
223 224 1.126296 GAAGAAAAGACCTACACGCGC 59.874 52.381 5.73 0.00 0.00 6.86
224 225 0.032952 AGAAAAGACCTACACGCGCA 59.967 50.000 5.73 0.00 0.00 6.09
225 226 0.163146 GAAAAGACCTACACGCGCAC 59.837 55.000 5.73 0.00 0.00 5.34
226 227 0.249741 AAAAGACCTACACGCGCACT 60.250 50.000 5.73 0.00 0.00 4.40
227 228 0.666577 AAAGACCTACACGCGCACTC 60.667 55.000 5.73 0.00 0.00 3.51
228 229 2.488087 AAGACCTACACGCGCACTCC 62.488 60.000 5.73 0.00 0.00 3.85
229 230 2.989824 ACCTACACGCGCACTCCT 60.990 61.111 5.73 0.00 0.00 3.69
230 231 2.202623 CCTACACGCGCACTCCTC 60.203 66.667 5.73 0.00 0.00 3.71
231 232 2.202623 CTACACGCGCACTCCTCC 60.203 66.667 5.73 0.00 0.00 4.30
232 233 2.675423 TACACGCGCACTCCTCCT 60.675 61.111 5.73 0.00 0.00 3.69
233 234 2.214181 CTACACGCGCACTCCTCCTT 62.214 60.000 5.73 0.00 0.00 3.36
234 235 0.961857 TACACGCGCACTCCTCCTTA 60.962 55.000 5.73 0.00 0.00 2.69
235 236 1.805945 CACGCGCACTCCTCCTTAC 60.806 63.158 5.73 0.00 0.00 2.34
236 237 1.977544 ACGCGCACTCCTCCTTACT 60.978 57.895 5.73 0.00 0.00 2.24
237 238 1.517257 CGCGCACTCCTCCTTACTG 60.517 63.158 8.75 0.00 0.00 2.74
238 239 1.811679 GCGCACTCCTCCTTACTGC 60.812 63.158 0.30 0.00 0.00 4.40
239 240 1.893786 CGCACTCCTCCTTACTGCT 59.106 57.895 0.00 0.00 0.00 4.24
240 241 0.179124 CGCACTCCTCCTTACTGCTC 60.179 60.000 0.00 0.00 0.00 4.26
241 242 0.179124 GCACTCCTCCTTACTGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
242 243 0.179124 CACTCCTCCTTACTGCTCGC 60.179 60.000 0.00 0.00 0.00 5.03
243 244 1.324005 ACTCCTCCTTACTGCTCGCC 61.324 60.000 0.00 0.00 0.00 5.54
244 245 1.304962 TCCTCCTTACTGCTCGCCA 60.305 57.895 0.00 0.00 0.00 5.69
245 246 1.153549 CCTCCTTACTGCTCGCCAC 60.154 63.158 0.00 0.00 0.00 5.01
246 247 1.517257 CTCCTTACTGCTCGCCACG 60.517 63.158 0.00 0.00 0.00 4.94
247 248 3.188786 CCTTACTGCTCGCCACGC 61.189 66.667 0.00 0.00 0.00 5.34
248 249 3.188786 CTTACTGCTCGCCACGCC 61.189 66.667 0.00 0.00 0.00 5.68
249 250 3.649277 CTTACTGCTCGCCACGCCT 62.649 63.158 0.00 0.00 0.00 5.52
250 251 3.642778 TTACTGCTCGCCACGCCTC 62.643 63.158 0.00 0.00 0.00 4.70
265 266 4.838486 CTCGCCACGCCTCGTCTC 62.838 72.222 0.00 0.00 38.32 3.36
269 270 3.733960 CCACGCCTCGTCTCGTCA 61.734 66.667 0.00 0.00 38.32 4.35
270 271 2.502080 CACGCCTCGTCTCGTCAC 60.502 66.667 0.00 0.00 38.32 3.67
271 272 4.086178 ACGCCTCGTCTCGTCACG 62.086 66.667 0.00 0.00 41.36 4.35
272 273 3.785499 CGCCTCGTCTCGTCACGA 61.785 66.667 0.00 0.00 46.42 4.35
276 277 2.097728 TCGTCTCGTCACGATGCG 59.902 61.111 14.83 14.83 43.79 4.73
277 278 3.598562 CGTCTCGTCACGATGCGC 61.599 66.667 0.00 0.00 42.69 6.09
278 279 3.248171 GTCTCGTCACGATGCGCC 61.248 66.667 4.18 0.00 34.61 6.53
279 280 4.829518 TCTCGTCACGATGCGCCG 62.830 66.667 4.18 4.34 34.61 6.46
309 310 2.438434 CGGGAATGAGCCACCACC 60.438 66.667 0.00 0.00 0.00 4.61
472 473 9.573133 AATTCGAATTCATTTGCTTAAACTAGG 57.427 29.630 17.60 0.00 0.00 3.02
530 531 3.274288 AGTGCGGGAAAAGATCTCATTC 58.726 45.455 11.10 11.10 0.00 2.67
552 553 6.352016 TCCCTAGCTTCATCATTCATAGTC 57.648 41.667 0.00 0.00 0.00 2.59
582 583 6.913170 ACAATCAACTAATAAGGCACACTTG 58.087 36.000 0.00 0.00 40.37 3.16
583 584 6.071952 ACAATCAACTAATAAGGCACACTTGG 60.072 38.462 0.00 0.00 40.37 3.61
603 606 3.206964 GGCCATCTTAACAGCCTACTTC 58.793 50.000 0.00 0.00 42.34 3.01
610 613 6.605471 TCTTAACAGCCTACTTCAGAATCA 57.395 37.500 0.00 0.00 0.00 2.57
624 627 4.774124 TCAGAATCATGTTCCTCCATCAC 58.226 43.478 0.00 0.00 0.00 3.06
625 628 4.225717 TCAGAATCATGTTCCTCCATCACA 59.774 41.667 0.00 0.00 0.00 3.58
687 691 2.766313 TGTTCTAGCTGTCGCATTTGT 58.234 42.857 0.00 0.00 39.10 2.83
689 693 3.678072 TGTTCTAGCTGTCGCATTTGTAC 59.322 43.478 0.00 0.00 39.10 2.90
711 715 1.626654 GAGAACATGCCACGACACCG 61.627 60.000 0.00 0.00 42.50 4.94
743 747 1.202114 CTGGCGAAAATTTGCAGGCTA 59.798 47.619 13.09 0.57 39.39 3.93
764 769 8.302438 AGGCTATTTTCTCTGTCAAATCAAAAG 58.698 33.333 0.00 0.00 0.00 2.27
766 772 9.468532 GCTATTTTCTCTGTCAAATCAAAAGTT 57.531 29.630 0.00 0.00 0.00 2.66
872 890 1.000060 GCAGCAAGCAAGGAACAATCA 60.000 47.619 0.00 0.00 44.79 2.57
902 931 5.541484 AGGAAAAGGTAAAAGTAGGACGAGA 59.459 40.000 0.00 0.00 0.00 4.04
915 944 1.596934 ACGAGACATGGCCATCGTT 59.403 52.632 23.03 8.39 45.39 3.85
925 962 4.892934 ACATGGCCATCGTTATTACCATTT 59.107 37.500 17.61 0.00 35.76 2.32
1010 1053 6.640907 CAGCACACGCAGAAAGTATATATACA 59.359 38.462 22.00 0.00 42.27 2.29
1131 1192 2.548920 CCTCGTCACCTTTTTCTGCTCT 60.549 50.000 0.00 0.00 0.00 4.09
1281 1351 0.250858 TGTACTCCTCGTCGACCCAA 60.251 55.000 10.58 0.00 0.00 4.12
1292 1374 2.438434 GACCCAACATCAGGCGGG 60.438 66.667 0.00 0.00 44.88 6.13
1480 1581 1.506493 CATGTCGCCTTAGAGCATCC 58.494 55.000 0.00 0.00 33.66 3.51
1490 1591 2.101640 TAGAGCATCCCCAGTGCATA 57.898 50.000 0.00 0.00 44.87 3.14
1538 1639 3.759766 GAGGTAGCCTGTCGCGAGC 62.760 68.421 10.24 10.43 44.76 5.03
1641 1742 2.125269 GTACGGAGCCGCCATGTT 60.125 61.111 9.14 0.00 44.19 2.71
1686 1787 5.284861 TCTAAGCCGACAGCCAAATATAA 57.715 39.130 0.00 0.00 45.47 0.98
1966 2084 1.977009 ACGTCACCGATCCAGAGCA 60.977 57.895 0.00 0.00 37.88 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.667539 TCCAACAACAATCCAGTCAAAAA 57.332 34.783 0.00 0.00 0.00 1.94
5 6 5.667539 TTCCAACAACAATCCAGTCAAAA 57.332 34.783 0.00 0.00 0.00 2.44
6 7 5.867903 ATTCCAACAACAATCCAGTCAAA 57.132 34.783 0.00 0.00 0.00 2.69
7 8 5.867903 AATTCCAACAACAATCCAGTCAA 57.132 34.783 0.00 0.00 0.00 3.18
8 9 5.128499 ACAAATTCCAACAACAATCCAGTCA 59.872 36.000 0.00 0.00 0.00 3.41
9 10 5.600696 ACAAATTCCAACAACAATCCAGTC 58.399 37.500 0.00 0.00 0.00 3.51
10 11 5.612725 ACAAATTCCAACAACAATCCAGT 57.387 34.783 0.00 0.00 0.00 4.00
11 12 7.209475 ACTAACAAATTCCAACAACAATCCAG 58.791 34.615 0.00 0.00 0.00 3.86
12 13 7.118496 ACTAACAAATTCCAACAACAATCCA 57.882 32.000 0.00 0.00 0.00 3.41
13 14 8.357402 ACTACTAACAAATTCCAACAACAATCC 58.643 33.333 0.00 0.00 0.00 3.01
14 15 9.394477 GACTACTAACAAATTCCAACAACAATC 57.606 33.333 0.00 0.00 0.00 2.67
15 16 8.357402 GGACTACTAACAAATTCCAACAACAAT 58.643 33.333 0.00 0.00 0.00 2.71
16 17 7.558444 AGGACTACTAACAAATTCCAACAACAA 59.442 33.333 0.00 0.00 0.00 2.83
17 18 7.057894 AGGACTACTAACAAATTCCAACAACA 58.942 34.615 0.00 0.00 0.00 3.33
18 19 7.506328 AGGACTACTAACAAATTCCAACAAC 57.494 36.000 0.00 0.00 0.00 3.32
19 20 8.410141 CAAAGGACTACTAACAAATTCCAACAA 58.590 33.333 0.00 0.00 0.00 2.83
20 21 7.013846 CCAAAGGACTACTAACAAATTCCAACA 59.986 37.037 0.00 0.00 0.00 3.33
21 22 7.013942 ACCAAAGGACTACTAACAAATTCCAAC 59.986 37.037 0.00 0.00 0.00 3.77
22 23 7.064229 ACCAAAGGACTACTAACAAATTCCAA 58.936 34.615 0.00 0.00 0.00 3.53
23 24 6.607019 ACCAAAGGACTACTAACAAATTCCA 58.393 36.000 0.00 0.00 0.00 3.53
24 25 6.150641 GGACCAAAGGACTACTAACAAATTCC 59.849 42.308 0.00 0.00 0.00 3.01
25 26 6.713450 TGGACCAAAGGACTACTAACAAATTC 59.287 38.462 0.00 0.00 0.00 2.17
26 27 6.607019 TGGACCAAAGGACTACTAACAAATT 58.393 36.000 0.00 0.00 0.00 1.82
27 28 6.195600 TGGACCAAAGGACTACTAACAAAT 57.804 37.500 0.00 0.00 0.00 2.32
28 29 5.633655 TGGACCAAAGGACTACTAACAAA 57.366 39.130 0.00 0.00 0.00 2.83
29 30 5.633655 TTGGACCAAAGGACTACTAACAA 57.366 39.130 3.84 0.00 0.00 2.83
30 31 5.617252 CTTTGGACCAAAGGACTACTAACA 58.383 41.667 31.55 3.00 44.75 2.41
45 46 4.283467 AGAATTTTAGTTGGGCTTTGGACC 59.717 41.667 0.00 0.00 42.24 4.46
46 47 5.010617 TCAGAATTTTAGTTGGGCTTTGGAC 59.989 40.000 0.00 0.00 0.00 4.02
47 48 5.144100 TCAGAATTTTAGTTGGGCTTTGGA 58.856 37.500 0.00 0.00 0.00 3.53
48 49 5.467035 TCAGAATTTTAGTTGGGCTTTGG 57.533 39.130 0.00 0.00 0.00 3.28
49 50 7.967890 ATTTCAGAATTTTAGTTGGGCTTTG 57.032 32.000 0.00 0.00 0.00 2.77
50 51 8.432013 AGAATTTCAGAATTTTAGTTGGGCTTT 58.568 29.630 0.00 0.00 35.65 3.51
51 52 7.966812 AGAATTTCAGAATTTTAGTTGGGCTT 58.033 30.769 0.00 0.00 35.65 4.35
52 53 7.452813 AGAGAATTTCAGAATTTTAGTTGGGCT 59.547 33.333 0.00 0.00 35.65 5.19
53 54 7.606349 AGAGAATTTCAGAATTTTAGTTGGGC 58.394 34.615 0.00 0.00 35.65 5.36
54 55 9.415544 CAAGAGAATTTCAGAATTTTAGTTGGG 57.584 33.333 0.00 0.00 35.65 4.12
55 56 9.415544 CCAAGAGAATTTCAGAATTTTAGTTGG 57.584 33.333 0.00 9.41 35.65 3.77
56 57 9.415544 CCCAAGAGAATTTCAGAATTTTAGTTG 57.584 33.333 0.00 0.00 35.65 3.16
57 58 8.090831 GCCCAAGAGAATTTCAGAATTTTAGTT 58.909 33.333 0.00 0.00 35.65 2.24
58 59 7.310052 GGCCCAAGAGAATTTCAGAATTTTAGT 60.310 37.037 0.00 0.00 35.65 2.24
59 60 7.038048 GGCCCAAGAGAATTTCAGAATTTTAG 58.962 38.462 0.00 0.00 35.65 1.85
60 61 6.496565 TGGCCCAAGAGAATTTCAGAATTTTA 59.503 34.615 0.00 0.00 35.65 1.52
61 62 5.307716 TGGCCCAAGAGAATTTCAGAATTTT 59.692 36.000 0.00 0.00 35.65 1.82
62 63 4.840115 TGGCCCAAGAGAATTTCAGAATTT 59.160 37.500 0.00 0.00 35.65 1.82
63 64 4.419282 TGGCCCAAGAGAATTTCAGAATT 58.581 39.130 0.00 0.00 38.16 2.17
64 65 4.051661 TGGCCCAAGAGAATTTCAGAAT 57.948 40.909 0.00 0.00 0.00 2.40
65 66 3.524095 TGGCCCAAGAGAATTTCAGAA 57.476 42.857 0.00 0.00 0.00 3.02
66 67 3.744940 ATGGCCCAAGAGAATTTCAGA 57.255 42.857 0.00 0.00 0.00 3.27
67 68 3.765511 TGAATGGCCCAAGAGAATTTCAG 59.234 43.478 0.00 0.00 0.00 3.02
68 69 3.777087 TGAATGGCCCAAGAGAATTTCA 58.223 40.909 0.00 0.00 0.00 2.69
69 70 4.690122 CATGAATGGCCCAAGAGAATTTC 58.310 43.478 0.00 0.00 0.00 2.17
70 71 3.118519 GCATGAATGGCCCAAGAGAATTT 60.119 43.478 0.00 0.00 0.00 1.82
71 72 2.433239 GCATGAATGGCCCAAGAGAATT 59.567 45.455 0.00 0.00 0.00 2.17
72 73 2.037144 GCATGAATGGCCCAAGAGAAT 58.963 47.619 0.00 0.00 0.00 2.40
73 74 1.272592 TGCATGAATGGCCCAAGAGAA 60.273 47.619 0.00 0.00 0.00 2.87
74 75 0.332293 TGCATGAATGGCCCAAGAGA 59.668 50.000 0.00 0.00 0.00 3.10
75 76 1.068588 CATGCATGAATGGCCCAAGAG 59.931 52.381 22.59 0.00 0.00 2.85
76 77 1.116308 CATGCATGAATGGCCCAAGA 58.884 50.000 22.59 0.00 0.00 3.02
77 78 0.105964 CCATGCATGAATGGCCCAAG 59.894 55.000 28.31 3.03 40.74 3.61
78 79 2.213280 CCATGCATGAATGGCCCAA 58.787 52.632 28.31 0.00 40.74 4.12
79 80 3.957919 CCATGCATGAATGGCCCA 58.042 55.556 28.31 0.00 40.74 5.36
84 85 2.165641 ACTCACAAGCCATGCATGAATG 59.834 45.455 28.31 22.51 31.38 2.67
85 86 2.165641 CACTCACAAGCCATGCATGAAT 59.834 45.455 28.31 12.81 31.38 2.57
86 87 1.542472 CACTCACAAGCCATGCATGAA 59.458 47.619 28.31 3.49 31.38 2.57
87 88 1.170442 CACTCACAAGCCATGCATGA 58.830 50.000 28.31 5.97 31.38 3.07
88 89 0.172578 CCACTCACAAGCCATGCATG 59.827 55.000 20.19 20.19 33.24 4.06
89 90 0.251474 ACCACTCACAAGCCATGCAT 60.251 50.000 0.00 0.00 0.00 3.96
90 91 1.151221 ACCACTCACAAGCCATGCA 59.849 52.632 0.00 0.00 0.00 3.96
91 92 1.174712 ACACCACTCACAAGCCATGC 61.175 55.000 0.00 0.00 0.00 4.06
92 93 0.594602 CACACCACTCACAAGCCATG 59.405 55.000 0.00 0.00 0.00 3.66
93 94 0.473755 TCACACCACTCACAAGCCAT 59.526 50.000 0.00 0.00 0.00 4.40
94 95 0.179048 CTCACACCACTCACAAGCCA 60.179 55.000 0.00 0.00 0.00 4.75
95 96 0.179045 ACTCACACCACTCACAAGCC 60.179 55.000 0.00 0.00 0.00 4.35
96 97 0.940126 CACTCACACCACTCACAAGC 59.060 55.000 0.00 0.00 0.00 4.01
97 98 1.586422 CCACTCACACCACTCACAAG 58.414 55.000 0.00 0.00 0.00 3.16
98 99 0.180171 CCCACTCACACCACTCACAA 59.820 55.000 0.00 0.00 0.00 3.33
99 100 0.689412 TCCCACTCACACCACTCACA 60.689 55.000 0.00 0.00 0.00 3.58
100 101 0.687354 ATCCCACTCACACCACTCAC 59.313 55.000 0.00 0.00 0.00 3.51
101 102 1.434188 AATCCCACTCACACCACTCA 58.566 50.000 0.00 0.00 0.00 3.41
102 103 3.695830 TTAATCCCACTCACACCACTC 57.304 47.619 0.00 0.00 0.00 3.51
103 104 3.394606 ACTTTAATCCCACTCACACCACT 59.605 43.478 0.00 0.00 0.00 4.00
104 105 3.751518 ACTTTAATCCCACTCACACCAC 58.248 45.455 0.00 0.00 0.00 4.16
105 106 4.447138 AACTTTAATCCCACTCACACCA 57.553 40.909 0.00 0.00 0.00 4.17
106 107 6.002082 ACTAAACTTTAATCCCACTCACACC 58.998 40.000 0.00 0.00 0.00 4.16
107 108 6.148976 GGACTAAACTTTAATCCCACTCACAC 59.851 42.308 0.00 0.00 0.00 3.82
108 109 6.235664 GGACTAAACTTTAATCCCACTCACA 58.764 40.000 0.00 0.00 0.00 3.58
109 110 6.738832 GGACTAAACTTTAATCCCACTCAC 57.261 41.667 0.00 0.00 0.00 3.51
116 117 4.275810 GGGGTGGGACTAAACTTTAATCC 58.724 47.826 1.01 1.01 0.00 3.01
117 118 3.943381 CGGGGTGGGACTAAACTTTAATC 59.057 47.826 0.00 0.00 0.00 1.75
118 119 3.308617 CCGGGGTGGGACTAAACTTTAAT 60.309 47.826 0.00 0.00 0.00 1.40
119 120 2.040145 CCGGGGTGGGACTAAACTTTAA 59.960 50.000 0.00 0.00 0.00 1.52
120 121 1.629861 CCGGGGTGGGACTAAACTTTA 59.370 52.381 0.00 0.00 0.00 1.85
121 122 0.402887 CCGGGGTGGGACTAAACTTT 59.597 55.000 0.00 0.00 0.00 2.66
122 123 0.474273 TCCGGGGTGGGACTAAACTT 60.474 55.000 0.00 0.00 38.76 2.66
123 124 0.474273 TTCCGGGGTGGGACTAAACT 60.474 55.000 0.00 0.00 38.76 2.66
124 125 0.035725 CTTCCGGGGTGGGACTAAAC 60.036 60.000 0.00 0.00 38.76 2.01
125 126 0.474273 ACTTCCGGGGTGGGACTAAA 60.474 55.000 0.00 0.00 38.76 1.85
126 127 0.474273 AACTTCCGGGGTGGGACTAA 60.474 55.000 0.00 0.00 38.76 2.24
127 128 1.159184 AACTTCCGGGGTGGGACTA 59.841 57.895 0.00 0.00 38.76 2.59
128 129 2.122099 AACTTCCGGGGTGGGACT 60.122 61.111 0.00 0.00 38.76 3.85
129 130 2.033602 CAACTTCCGGGGTGGGAC 59.966 66.667 0.00 0.00 38.76 4.46
130 131 2.122324 TCAACTTCCGGGGTGGGA 60.122 61.111 0.00 0.56 38.76 4.37
131 132 2.351276 CTCAACTTCCGGGGTGGG 59.649 66.667 0.00 0.00 38.76 4.61
132 133 1.302511 CACTCAACTTCCGGGGTGG 60.303 63.158 0.00 0.00 40.09 4.61
133 134 0.320771 CTCACTCAACTTCCGGGGTG 60.321 60.000 0.00 0.00 0.00 4.61
134 135 0.471211 TCTCACTCAACTTCCGGGGT 60.471 55.000 0.00 0.00 0.00 4.95
135 136 0.037232 GTCTCACTCAACTTCCGGGG 60.037 60.000 0.00 0.00 0.00 5.73
136 137 0.969894 AGTCTCACTCAACTTCCGGG 59.030 55.000 0.00 0.00 0.00 5.73
137 138 2.408050 CAAGTCTCACTCAACTTCCGG 58.592 52.381 0.00 0.00 33.53 5.14
138 139 1.795286 GCAAGTCTCACTCAACTTCCG 59.205 52.381 0.00 0.00 33.53 4.30
139 140 2.545946 GTGCAAGTCTCACTCAACTTCC 59.454 50.000 0.00 0.00 33.53 3.46
140 141 2.545946 GGTGCAAGTCTCACTCAACTTC 59.454 50.000 0.00 0.00 33.53 3.01
141 142 2.171448 AGGTGCAAGTCTCACTCAACTT 59.829 45.455 0.00 0.00 36.16 2.66
142 143 1.765314 AGGTGCAAGTCTCACTCAACT 59.235 47.619 0.00 0.00 34.97 3.16
143 144 2.139118 GAGGTGCAAGTCTCACTCAAC 58.861 52.381 7.76 0.00 34.97 3.18
144 145 2.042464 AGAGGTGCAAGTCTCACTCAA 58.958 47.619 13.25 0.00 34.97 3.02
145 146 1.709578 AGAGGTGCAAGTCTCACTCA 58.290 50.000 13.25 0.00 34.97 3.41
146 147 2.829741 AAGAGGTGCAAGTCTCACTC 57.170 50.000 13.25 0.00 34.97 3.51
147 148 4.899352 ATAAAGAGGTGCAAGTCTCACT 57.101 40.909 13.25 4.72 34.97 3.41
148 149 5.582665 CCTTATAAAGAGGTGCAAGTCTCAC 59.417 44.000 13.25 0.00 32.76 3.51
149 150 5.248477 ACCTTATAAAGAGGTGCAAGTCTCA 59.752 40.000 13.25 1.17 45.59 3.27
150 151 5.735766 ACCTTATAAAGAGGTGCAAGTCTC 58.264 41.667 0.00 0.00 45.59 3.36
151 152 5.763876 ACCTTATAAAGAGGTGCAAGTCT 57.236 39.130 0.00 0.00 45.59 3.24
161 162 9.137459 TGATAGAAGACCTCACCTTATAAAGAG 57.863 37.037 3.45 3.45 0.00 2.85
162 163 8.915036 GTGATAGAAGACCTCACCTTATAAAGA 58.085 37.037 0.00 0.00 34.55 2.52
163 164 8.919145 AGTGATAGAAGACCTCACCTTATAAAG 58.081 37.037 0.00 0.00 40.08 1.85
164 165 8.840200 AGTGATAGAAGACCTCACCTTATAAA 57.160 34.615 0.00 0.00 40.08 1.40
165 166 8.696374 CAAGTGATAGAAGACCTCACCTTATAA 58.304 37.037 0.00 0.00 40.08 0.98
166 167 7.839705 ACAAGTGATAGAAGACCTCACCTTATA 59.160 37.037 0.00 0.00 40.08 0.98
167 168 6.670027 ACAAGTGATAGAAGACCTCACCTTAT 59.330 38.462 0.00 0.00 40.08 1.73
168 169 6.017192 ACAAGTGATAGAAGACCTCACCTTA 58.983 40.000 0.00 0.00 40.08 2.69
169 170 4.841246 ACAAGTGATAGAAGACCTCACCTT 59.159 41.667 0.00 0.00 40.08 3.50
170 171 4.421131 ACAAGTGATAGAAGACCTCACCT 58.579 43.478 0.00 0.00 40.08 4.00
171 172 4.810191 ACAAGTGATAGAAGACCTCACC 57.190 45.455 0.00 0.00 40.08 4.02
172 173 7.159322 TCTTACAAGTGATAGAAGACCTCAC 57.841 40.000 0.00 0.00 39.63 3.51
173 174 6.127591 GCTCTTACAAGTGATAGAAGACCTCA 60.128 42.308 0.00 0.00 0.00 3.86
174 175 6.127591 TGCTCTTACAAGTGATAGAAGACCTC 60.128 42.308 0.00 0.00 0.00 3.85
175 176 5.717178 TGCTCTTACAAGTGATAGAAGACCT 59.283 40.000 0.00 0.00 0.00 3.85
176 177 5.967088 TGCTCTTACAAGTGATAGAAGACC 58.033 41.667 0.00 0.00 0.00 3.85
177 178 7.261325 TCATGCTCTTACAAGTGATAGAAGAC 58.739 38.462 0.00 0.00 0.00 3.01
178 179 7.340487 TCTCATGCTCTTACAAGTGATAGAAGA 59.660 37.037 0.00 0.00 0.00 2.87
179 180 7.487484 TCTCATGCTCTTACAAGTGATAGAAG 58.513 38.462 0.00 0.00 0.00 2.85
180 181 7.410120 TCTCATGCTCTTACAAGTGATAGAA 57.590 36.000 0.00 0.00 0.00 2.10
181 182 7.340487 TCTTCTCATGCTCTTACAAGTGATAGA 59.660 37.037 0.00 0.00 0.00 1.98
182 183 7.487484 TCTTCTCATGCTCTTACAAGTGATAG 58.513 38.462 0.00 0.00 0.00 2.08
183 184 7.410120 TCTTCTCATGCTCTTACAAGTGATA 57.590 36.000 0.00 0.00 0.00 2.15
184 185 6.291648 TCTTCTCATGCTCTTACAAGTGAT 57.708 37.500 0.00 0.00 0.00 3.06
185 186 5.728637 TCTTCTCATGCTCTTACAAGTGA 57.271 39.130 0.00 0.00 0.00 3.41
186 187 6.791887 TTTCTTCTCATGCTCTTACAAGTG 57.208 37.500 0.00 0.00 0.00 3.16
187 188 7.172361 GTCTTTTCTTCTCATGCTCTTACAAGT 59.828 37.037 0.00 0.00 0.00 3.16
188 189 7.360776 GGTCTTTTCTTCTCATGCTCTTACAAG 60.361 40.741 0.00 0.00 0.00 3.16
189 190 6.428159 GGTCTTTTCTTCTCATGCTCTTACAA 59.572 38.462 0.00 0.00 0.00 2.41
190 191 5.934625 GGTCTTTTCTTCTCATGCTCTTACA 59.065 40.000 0.00 0.00 0.00 2.41
191 192 6.169800 AGGTCTTTTCTTCTCATGCTCTTAC 58.830 40.000 0.00 0.00 0.00 2.34
192 193 6.365970 AGGTCTTTTCTTCTCATGCTCTTA 57.634 37.500 0.00 0.00 0.00 2.10
193 194 5.240013 AGGTCTTTTCTTCTCATGCTCTT 57.760 39.130 0.00 0.00 0.00 2.85
194 195 4.906747 AGGTCTTTTCTTCTCATGCTCT 57.093 40.909 0.00 0.00 0.00 4.09
195 196 5.350091 GTGTAGGTCTTTTCTTCTCATGCTC 59.650 44.000 0.00 0.00 0.00 4.26
196 197 5.241662 GTGTAGGTCTTTTCTTCTCATGCT 58.758 41.667 0.00 0.00 0.00 3.79
197 198 4.092091 CGTGTAGGTCTTTTCTTCTCATGC 59.908 45.833 0.00 0.00 0.00 4.06
198 199 4.092091 GCGTGTAGGTCTTTTCTTCTCATG 59.908 45.833 0.00 0.00 0.00 3.07
199 200 4.246458 GCGTGTAGGTCTTTTCTTCTCAT 58.754 43.478 0.00 0.00 0.00 2.90
200 201 3.650139 GCGTGTAGGTCTTTTCTTCTCA 58.350 45.455 0.00 0.00 0.00 3.27
201 202 2.662156 CGCGTGTAGGTCTTTTCTTCTC 59.338 50.000 0.00 0.00 0.00 2.87
202 203 2.673833 CGCGTGTAGGTCTTTTCTTCT 58.326 47.619 0.00 0.00 0.00 2.85
203 204 1.126296 GCGCGTGTAGGTCTTTTCTTC 59.874 52.381 8.43 0.00 0.00 2.87
204 205 1.145803 GCGCGTGTAGGTCTTTTCTT 58.854 50.000 8.43 0.00 0.00 2.52
205 206 0.032952 TGCGCGTGTAGGTCTTTTCT 59.967 50.000 8.43 0.00 0.00 2.52
206 207 0.163146 GTGCGCGTGTAGGTCTTTTC 59.837 55.000 8.43 0.00 0.00 2.29
207 208 0.249741 AGTGCGCGTGTAGGTCTTTT 60.250 50.000 8.43 0.00 0.00 2.27
208 209 0.666577 GAGTGCGCGTGTAGGTCTTT 60.667 55.000 8.43 0.00 0.00 2.52
209 210 1.080705 GAGTGCGCGTGTAGGTCTT 60.081 57.895 8.43 0.00 0.00 3.01
210 211 2.567049 GAGTGCGCGTGTAGGTCT 59.433 61.111 8.43 0.00 0.00 3.85
211 212 2.506438 GGAGTGCGCGTGTAGGTC 60.506 66.667 8.43 0.00 0.00 3.85
212 213 2.989824 AGGAGTGCGCGTGTAGGT 60.990 61.111 8.43 0.00 0.00 3.08
213 214 2.202623 GAGGAGTGCGCGTGTAGG 60.203 66.667 8.43 0.00 0.00 3.18
214 215 2.202623 GGAGGAGTGCGCGTGTAG 60.203 66.667 8.43 0.00 0.00 2.74
215 216 0.961857 TAAGGAGGAGTGCGCGTGTA 60.962 55.000 8.43 0.00 0.00 2.90
216 217 2.273179 TAAGGAGGAGTGCGCGTGT 61.273 57.895 8.43 0.00 0.00 4.49
217 218 1.805945 GTAAGGAGGAGTGCGCGTG 60.806 63.158 8.43 0.00 0.00 5.34
218 219 1.977544 AGTAAGGAGGAGTGCGCGT 60.978 57.895 8.43 0.00 0.00 6.01
219 220 1.517257 CAGTAAGGAGGAGTGCGCG 60.517 63.158 0.00 0.00 0.00 6.86
220 221 1.811679 GCAGTAAGGAGGAGTGCGC 60.812 63.158 0.00 0.00 33.79 6.09
221 222 0.179124 GAGCAGTAAGGAGGAGTGCG 60.179 60.000 0.00 0.00 45.99 5.34
222 223 0.179124 CGAGCAGTAAGGAGGAGTGC 60.179 60.000 0.00 0.00 42.51 4.40
223 224 0.179124 GCGAGCAGTAAGGAGGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
224 225 1.324005 GGCGAGCAGTAAGGAGGAGT 61.324 60.000 0.00 0.00 0.00 3.85
225 226 1.323271 TGGCGAGCAGTAAGGAGGAG 61.323 60.000 0.00 0.00 0.00 3.69
226 227 1.304962 TGGCGAGCAGTAAGGAGGA 60.305 57.895 0.00 0.00 0.00 3.71
227 228 1.153549 GTGGCGAGCAGTAAGGAGG 60.154 63.158 0.00 0.00 0.00 4.30
228 229 1.517257 CGTGGCGAGCAGTAAGGAG 60.517 63.158 0.00 0.00 0.00 3.69
229 230 2.571757 CGTGGCGAGCAGTAAGGA 59.428 61.111 0.00 0.00 0.00 3.36
230 231 3.188786 GCGTGGCGAGCAGTAAGG 61.189 66.667 0.00 0.00 34.19 2.69
231 232 3.188786 GGCGTGGCGAGCAGTAAG 61.189 66.667 6.35 0.00 36.08 2.34
232 233 3.642778 GAGGCGTGGCGAGCAGTAA 62.643 63.158 6.35 0.00 36.08 2.24
233 234 4.129737 GAGGCGTGGCGAGCAGTA 62.130 66.667 6.35 0.00 36.08 2.74
248 249 4.838486 GAGACGAGGCGTGGCGAG 62.838 72.222 0.00 0.00 41.37 5.03
252 253 3.733960 TGACGAGACGAGGCGTGG 61.734 66.667 0.00 0.00 41.37 4.94
253 254 2.502080 GTGACGAGACGAGGCGTG 60.502 66.667 0.00 0.00 41.37 5.34
254 255 4.086178 CGTGACGAGACGAGGCGT 62.086 66.667 0.00 0.00 45.10 5.68
255 256 3.785499 TCGTGACGAGACGAGGCG 61.785 66.667 2.39 0.00 43.26 5.52
260 261 3.598562 GCGCATCGTGACGAGACG 61.599 66.667 22.58 22.58 39.91 4.18
261 262 3.248171 GGCGCATCGTGACGAGAC 61.248 66.667 14.71 6.90 39.91 3.36
262 263 4.829518 CGGCGCATCGTGACGAGA 62.830 66.667 14.71 0.00 39.91 4.04
287 288 4.467084 TGGCTCATTCCCGCGACC 62.467 66.667 8.23 0.00 0.00 4.79
288 289 3.195698 GTGGCTCATTCCCGCGAC 61.196 66.667 8.23 0.00 0.00 5.19
289 290 4.467084 GGTGGCTCATTCCCGCGA 62.467 66.667 8.23 0.00 33.68 5.87
290 291 4.776322 TGGTGGCTCATTCCCGCG 62.776 66.667 0.00 0.00 33.68 6.46
291 292 3.134127 GTGGTGGCTCATTCCCGC 61.134 66.667 0.00 0.00 0.00 6.13
292 293 2.438434 GGTGGTGGCTCATTCCCG 60.438 66.667 0.00 0.00 0.00 5.14
293 294 2.043953 GGGTGGTGGCTCATTCCC 60.044 66.667 0.00 0.00 0.00 3.97
294 295 2.043953 GGGGTGGTGGCTCATTCC 60.044 66.667 0.00 0.00 0.00 3.01
295 296 1.379044 CAGGGGTGGTGGCTCATTC 60.379 63.158 0.00 0.00 0.00 2.67
296 297 2.765969 CAGGGGTGGTGGCTCATT 59.234 61.111 0.00 0.00 0.00 2.57
297 298 4.052518 GCAGGGGTGGTGGCTCAT 62.053 66.667 0.00 0.00 0.00 2.90
309 310 0.909610 TGGTACAAGAGGAGGCAGGG 60.910 60.000 0.00 0.00 31.92 4.45
471 472 1.483004 GCTACTCTTGGAACCTCTCCC 59.517 57.143 0.00 0.00 44.69 4.30
472 473 1.483004 GGCTACTCTTGGAACCTCTCC 59.517 57.143 0.00 0.00 45.64 3.71
530 531 5.012458 TGGACTATGAATGATGAAGCTAGGG 59.988 44.000 0.00 0.00 0.00 3.53
552 553 8.465999 TGTGCCTTATTAGTTGATTGTTTATGG 58.534 33.333 0.00 0.00 0.00 2.74
582 583 3.206964 GAAGTAGGCTGTTAAGATGGCC 58.793 50.000 0.00 0.00 44.38 5.36
583 584 3.873910 TGAAGTAGGCTGTTAAGATGGC 58.126 45.455 0.00 0.00 0.00 4.40
603 606 4.520179 TGTGATGGAGGAACATGATTCTG 58.480 43.478 0.00 0.00 0.00 3.02
610 613 3.264193 TGCTACTTGTGATGGAGGAACAT 59.736 43.478 0.00 0.00 0.00 2.71
651 655 5.163814 GCTAGAACATAAAAGTGTGCCTCTG 60.164 44.000 0.00 0.00 31.49 3.35
687 691 3.086282 TGTCGTGGCATGTTCTCTAGTA 58.914 45.455 6.60 0.00 0.00 1.82
689 693 2.263077 GTGTCGTGGCATGTTCTCTAG 58.737 52.381 6.60 0.00 0.00 2.43
711 715 5.874895 ATTTTCGCCAGTAAAGAAGGTAC 57.125 39.130 0.00 0.00 0.00 3.34
764 769 4.510571 TCTTACGAGGATGGGCTTTTAAC 58.489 43.478 0.00 0.00 0.00 2.01
766 772 4.829872 TTCTTACGAGGATGGGCTTTTA 57.170 40.909 0.00 0.00 0.00 1.52
803 813 7.154191 ACAGTTGTATTCATATTCCTGGGAT 57.846 36.000 0.00 0.00 0.00 3.85
872 890 6.100714 TCCTACTTTTACCTTTTCCTGTCACT 59.899 38.462 0.00 0.00 0.00 3.41
902 931 3.569194 TGGTAATAACGATGGCCATGT 57.431 42.857 26.56 18.40 0.00 3.21
915 944 4.160065 TCGACCACGAAGGAAATGGTAATA 59.840 41.667 5.70 0.00 46.86 0.98
1010 1053 0.618458 AACCTGACCGTGCCACATAT 59.382 50.000 0.00 0.00 0.00 1.78
1281 1351 3.480133 GTAGCCCCCGCCTGATGT 61.480 66.667 0.00 0.00 34.57 3.06
1463 1554 1.686325 GGGGATGCTCTAAGGCGACA 61.686 60.000 0.00 0.00 34.52 4.35
1471 1567 1.694150 GTATGCACTGGGGATGCTCTA 59.306 52.381 0.00 0.00 43.77 2.43
1480 1581 1.206132 TGACGGTTAGTATGCACTGGG 59.794 52.381 0.00 0.00 36.14 4.45
1490 1591 0.039437 CTGACGCTGTGACGGTTAGT 60.039 55.000 0.00 0.00 37.37 2.24
1641 1742 0.530744 CTGTTCCGGTAGTGCTAGCA 59.469 55.000 14.93 14.93 33.46 3.49
1966 2084 1.614241 GCATAGGTCCTGGTCGGTGT 61.614 60.000 0.00 0.00 0.00 4.16
2401 2653 1.784301 TTCCCCATTCCAGTTGCCGA 61.784 55.000 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.