Multiple sequence alignment - TraesCS5A01G028000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G028000 chr5A 100.000 2459 0 0 1 2459 23916579 23914121 0.000000e+00 4542.0
1 TraesCS5A01G028000 chr5A 83.656 1138 83 37 439 1572 24188294 24189332 0.000000e+00 976.0
2 TraesCS5A01G028000 chr5A 81.176 425 44 12 208 607 24047087 24047500 2.370000e-80 309.0
3 TraesCS5A01G028000 chr5A 79.358 436 61 22 1017 1433 24161359 24161784 1.860000e-71 279.0
4 TraesCS5A01G028000 chr5A 90.196 51 3 1 1797 1845 24189502 24189552 5.680000e-07 65.8
5 TraesCS5A01G028000 chrUn 84.669 1011 91 39 579 1574 313466933 313467894 0.000000e+00 950.0
6 TraesCS5A01G028000 chrUn 83.147 807 72 24 780 1574 293019787 293019033 0.000000e+00 678.0
7 TraesCS5A01G028000 chrUn 83.147 807 72 24 780 1574 326320970 326320216 0.000000e+00 678.0
8 TraesCS5A01G028000 chrUn 82.051 429 42 16 208 610 342987678 342987259 1.410000e-87 333.0
9 TraesCS5A01G028000 chrUn 82.477 331 24 13 272 578 313466473 313466793 2.430000e-65 259.0
10 TraesCS5A01G028000 chrUn 77.061 279 44 13 1905 2181 344039380 344039120 2.550000e-30 143.0
11 TraesCS5A01G028000 chr5D 86.418 832 74 14 780 1605 35560776 35561574 0.000000e+00 874.0
12 TraesCS5A01G028000 chr5D 86.029 816 75 22 899 1678 35223705 35222893 0.000000e+00 839.0
13 TraesCS5A01G028000 chr5D 82.944 428 41 13 208 611 35349390 35349809 8.360000e-95 357.0
14 TraesCS5A01G028000 chr5D 85.502 269 35 4 208 475 35557441 35557706 6.700000e-71 278.0
15 TraesCS5A01G028000 chr5D 87.200 250 14 8 1997 2243 35220136 35219902 4.030000e-68 268.0
16 TraesCS5A01G028000 chr5D 78.271 451 52 35 1016 1433 35534216 35534653 5.250000e-62 248.0
17 TraesCS5A01G028000 chr5D 88.384 198 10 6 1797 1994 35222874 35222690 2.460000e-55 226.0
18 TraesCS5A01G028000 chr5D 92.000 100 8 0 110 209 37151049 37150950 9.170000e-30 141.0
19 TraesCS5A01G028000 chr5D 81.595 163 24 5 2028 2188 35562234 35562392 1.980000e-26 130.0
20 TraesCS5A01G028000 chr5D 78.008 241 28 12 510 747 35559683 35559901 7.140000e-26 128.0
21 TraesCS5A01G028000 chr5B 84.615 819 68 31 780 1597 26606460 26605699 0.000000e+00 761.0
22 TraesCS5A01G028000 chr5B 86.557 305 31 7 206 502 26607103 26606801 6.560000e-86 327.0
23 TraesCS5A01G028000 chr3A 94.326 141 8 0 62 202 160308394 160308534 1.480000e-52 217.0
24 TraesCS5A01G028000 chr3A 96.386 83 3 0 1694 1776 127349152 127349070 1.190000e-28 137.0
25 TraesCS5A01G028000 chr7D 89.404 151 15 1 60 209 413232921 413233071 3.230000e-44 189.0
26 TraesCS5A01G028000 chr7A 88.889 153 14 2 60 209 47551872 47551720 4.180000e-43 185.0
27 TraesCS5A01G028000 chr7A 84.667 150 21 2 60 208 31593971 31594119 5.480000e-32 148.0
28 TraesCS5A01G028000 chr4B 86.842 152 19 1 59 209 435908291 435908442 4.210000e-38 169.0
29 TraesCS5A01G028000 chr3D 85.333 150 21 1 60 208 131484541 131484690 1.180000e-33 154.0
30 TraesCS5A01G028000 chr7B 100.000 42 0 0 165 206 728120689 728120730 7.290000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G028000 chr5A 23914121 23916579 2458 True 4542.000000 4542 100.000000 1 2459 1 chr5A.!!$R1 2458
1 TraesCS5A01G028000 chr5A 24188294 24189552 1258 False 520.900000 976 86.926000 439 1845 2 chr5A.!!$F3 1406
2 TraesCS5A01G028000 chrUn 293019033 293019787 754 True 678.000000 678 83.147000 780 1574 1 chrUn.!!$R1 794
3 TraesCS5A01G028000 chrUn 326320216 326320970 754 True 678.000000 678 83.147000 780 1574 1 chrUn.!!$R2 794
4 TraesCS5A01G028000 chrUn 313466473 313467894 1421 False 604.500000 950 83.573000 272 1574 2 chrUn.!!$F1 1302
5 TraesCS5A01G028000 chr5D 35219902 35223705 3803 True 444.333333 839 87.204333 899 2243 3 chr5D.!!$R2 1344
6 TraesCS5A01G028000 chr5D 35557441 35562392 4951 False 352.500000 874 82.880750 208 2188 4 chr5D.!!$F3 1980
7 TraesCS5A01G028000 chr5B 26605699 26607103 1404 True 544.000000 761 85.586000 206 1597 2 chr5B.!!$R1 1391

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.028902 TCCGTCGTGCATAGATCGTG 59.971 55.0 0.0 0.0 0.0 4.35 F
199 200 0.109086 CAGCACTGTCGTCTGGGTAG 60.109 60.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 4604 0.966179 AGGAATTTTTCACGGTGGCC 59.034 50.0 8.50 0.0 0.00 5.36 R
1905 5161 0.973632 TGCGCCCGTATGGAGATATT 59.026 50.0 4.18 0.0 35.62 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.117145 CATACCATATTTTAATGAATCGTGTGC 57.883 33.333 0.00 0.00 0.00 4.57
32 33 7.094508 ACCATATTTTAATGAATCGTGTGCA 57.905 32.000 0.00 0.00 0.00 4.57
33 34 7.715657 ACCATATTTTAATGAATCGTGTGCAT 58.284 30.769 0.00 0.00 0.00 3.96
34 35 8.845227 ACCATATTTTAATGAATCGTGTGCATA 58.155 29.630 0.00 0.00 0.00 3.14
35 36 9.676195 CCATATTTTAATGAATCGTGTGCATAA 57.324 29.630 0.00 0.00 0.00 1.90
39 40 9.800433 ATTTTAATGAATCGTGTGCATAAATGA 57.200 25.926 0.00 0.00 0.00 2.57
40 41 9.631452 TTTTAATGAATCGTGTGCATAAATGAA 57.369 25.926 0.00 0.00 0.00 2.57
41 42 9.800433 TTTAATGAATCGTGTGCATAAATGAAT 57.200 25.926 0.00 0.00 0.00 2.57
42 43 9.800433 TTAATGAATCGTGTGCATAAATGAATT 57.200 25.926 0.00 0.00 0.00 2.17
43 44 7.919313 ATGAATCGTGTGCATAAATGAATTC 57.081 32.000 0.00 0.00 0.00 2.17
44 45 6.850555 TGAATCGTGTGCATAAATGAATTCA 58.149 32.000 11.26 11.26 0.00 2.57
45 46 6.968335 TGAATCGTGTGCATAAATGAATTCAG 59.032 34.615 14.54 0.71 0.00 3.02
46 47 5.233957 TCGTGTGCATAAATGAATTCAGG 57.766 39.130 14.54 2.37 0.00 3.86
47 48 4.699735 TCGTGTGCATAAATGAATTCAGGT 59.300 37.500 14.54 6.59 0.00 4.00
48 49 5.030295 CGTGTGCATAAATGAATTCAGGTC 58.970 41.667 14.54 0.89 0.00 3.85
49 50 5.030295 GTGTGCATAAATGAATTCAGGTCG 58.970 41.667 14.54 2.66 0.00 4.79
50 51 4.699735 TGTGCATAAATGAATTCAGGTCGT 59.300 37.500 14.54 0.00 0.00 4.34
51 52 5.877564 TGTGCATAAATGAATTCAGGTCGTA 59.122 36.000 14.54 2.12 0.00 3.43
52 53 6.037062 TGTGCATAAATGAATTCAGGTCGTAG 59.963 38.462 14.54 2.07 0.00 3.51
53 54 6.037172 GTGCATAAATGAATTCAGGTCGTAGT 59.963 38.462 14.54 0.00 0.00 2.73
54 55 7.223971 GTGCATAAATGAATTCAGGTCGTAGTA 59.776 37.037 14.54 0.00 0.00 1.82
55 56 7.766738 TGCATAAATGAATTCAGGTCGTAGTAA 59.233 33.333 14.54 0.00 0.00 2.24
56 57 8.609176 GCATAAATGAATTCAGGTCGTAGTAAA 58.391 33.333 14.54 0.00 0.00 2.01
59 60 6.980051 ATGAATTCAGGTCGTAGTAAAACC 57.020 37.500 14.54 0.00 0.00 3.27
60 61 5.856156 TGAATTCAGGTCGTAGTAAAACCA 58.144 37.500 3.38 0.00 35.43 3.67
61 62 5.929992 TGAATTCAGGTCGTAGTAAAACCAG 59.070 40.000 3.38 0.00 35.43 4.00
62 63 3.308438 TCAGGTCGTAGTAAAACCAGC 57.692 47.619 5.30 0.00 35.43 4.85
63 64 2.629137 TCAGGTCGTAGTAAAACCAGCA 59.371 45.455 5.30 0.00 35.43 4.41
64 65 2.993899 CAGGTCGTAGTAAAACCAGCAG 59.006 50.000 5.30 0.00 35.43 4.24
65 66 2.631545 AGGTCGTAGTAAAACCAGCAGT 59.368 45.455 5.30 0.00 35.43 4.40
66 67 2.735134 GGTCGTAGTAAAACCAGCAGTG 59.265 50.000 0.00 0.00 33.11 3.66
67 68 2.157085 GTCGTAGTAAAACCAGCAGTGC 59.843 50.000 7.13 7.13 0.00 4.40
68 69 2.036733 TCGTAGTAAAACCAGCAGTGCT 59.963 45.455 13.14 13.14 40.77 4.40
69 70 3.256383 TCGTAGTAAAACCAGCAGTGCTA 59.744 43.478 19.26 0.00 36.40 3.49
70 71 4.081862 TCGTAGTAAAACCAGCAGTGCTAT 60.082 41.667 19.26 6.25 36.40 2.97
71 72 5.125900 TCGTAGTAAAACCAGCAGTGCTATA 59.874 40.000 19.26 3.64 36.40 1.31
72 73 5.231568 CGTAGTAAAACCAGCAGTGCTATAC 59.768 44.000 19.26 14.88 36.40 1.47
73 74 5.160607 AGTAAAACCAGCAGTGCTATACA 57.839 39.130 19.26 0.00 36.40 2.29
87 88 5.195001 TGCTATACACACGATAGAATGCA 57.805 39.130 0.00 0.00 41.38 3.96
88 89 4.982295 TGCTATACACACGATAGAATGCAC 59.018 41.667 0.00 0.00 41.38 4.57
89 90 4.982295 GCTATACACACGATAGAATGCACA 59.018 41.667 0.00 0.00 41.38 4.57
90 91 5.107837 GCTATACACACGATAGAATGCACAC 60.108 44.000 0.00 0.00 41.38 3.82
91 92 1.992667 ACACACGATAGAATGCACACG 59.007 47.619 0.00 0.00 41.38 4.49
92 93 2.258755 CACACGATAGAATGCACACGA 58.741 47.619 0.00 0.00 41.38 4.35
93 94 2.028045 CACACGATAGAATGCACACGAC 59.972 50.000 0.00 0.00 41.38 4.34
94 95 2.094700 ACACGATAGAATGCACACGACT 60.095 45.455 0.00 0.00 41.38 4.18
95 96 2.923655 CACGATAGAATGCACACGACTT 59.076 45.455 0.00 0.00 41.38 3.01
96 97 4.102649 CACGATAGAATGCACACGACTTA 58.897 43.478 0.00 0.00 41.38 2.24
97 98 4.740205 CACGATAGAATGCACACGACTTAT 59.260 41.667 0.00 0.00 41.38 1.73
98 99 5.912955 CACGATAGAATGCACACGACTTATA 59.087 40.000 0.00 0.00 41.38 0.98
99 100 6.086896 CACGATAGAATGCACACGACTTATAG 59.913 42.308 0.00 0.00 41.38 1.31
100 101 6.017357 ACGATAGAATGCACACGACTTATAGA 60.017 38.462 0.00 0.00 41.38 1.98
101 102 6.303496 CGATAGAATGCACACGACTTATAGAC 59.697 42.308 0.00 0.00 39.76 2.59
102 103 4.352039 AGAATGCACACGACTTATAGACG 58.648 43.478 0.00 0.00 39.17 4.18
103 104 4.095932 AGAATGCACACGACTTATAGACGA 59.904 41.667 5.65 0.00 36.90 4.20
104 105 4.569761 ATGCACACGACTTATAGACGAT 57.430 40.909 5.65 0.00 36.90 3.73
105 106 5.684550 ATGCACACGACTTATAGACGATA 57.315 39.130 5.65 0.00 36.90 2.92
106 107 5.091910 TGCACACGACTTATAGACGATAG 57.908 43.478 5.65 0.00 36.90 2.08
122 123 3.057734 CGATAGTTAAATCCAGCCGGAC 58.942 50.000 5.05 0.00 46.79 4.79
123 124 3.491964 CGATAGTTAAATCCAGCCGGACA 60.492 47.826 5.05 0.00 46.79 4.02
124 125 4.642429 GATAGTTAAATCCAGCCGGACAT 58.358 43.478 5.05 0.00 46.79 3.06
125 126 2.643551 AGTTAAATCCAGCCGGACATG 58.356 47.619 5.05 0.00 46.79 3.21
126 127 1.676006 GTTAAATCCAGCCGGACATGG 59.324 52.381 5.05 10.38 46.79 3.66
127 128 1.208706 TAAATCCAGCCGGACATGGA 58.791 50.000 21.41 21.41 46.79 3.41
129 130 2.284625 TCCAGCCGGACATGGACT 60.285 61.111 16.90 0.00 40.70 3.85
130 131 2.124983 CCAGCCGGACATGGACTG 60.125 66.667 5.05 0.00 39.02 3.51
131 132 2.659063 CCAGCCGGACATGGACTGA 61.659 63.158 5.05 0.00 39.02 3.41
132 133 1.524002 CAGCCGGACATGGACTGAT 59.476 57.895 5.05 0.00 36.11 2.90
133 134 0.812811 CAGCCGGACATGGACTGATG 60.813 60.000 5.05 0.00 36.11 3.07
134 135 1.524621 GCCGGACATGGACTGATGG 60.525 63.158 5.05 0.00 0.00 3.51
135 136 1.971505 GCCGGACATGGACTGATGGA 61.972 60.000 5.05 0.00 0.00 3.41
136 137 0.179073 CCGGACATGGACTGATGGAC 60.179 60.000 0.00 0.00 0.00 4.02
137 138 0.536724 CGGACATGGACTGATGGACA 59.463 55.000 0.00 0.00 0.00 4.02
138 139 1.066215 CGGACATGGACTGATGGACAA 60.066 52.381 0.00 0.00 0.00 3.18
139 140 2.420547 CGGACATGGACTGATGGACAAT 60.421 50.000 0.00 0.00 0.00 2.71
140 141 2.947652 GGACATGGACTGATGGACAATG 59.052 50.000 0.00 0.00 0.00 2.82
141 142 2.947652 GACATGGACTGATGGACAATGG 59.052 50.000 0.00 0.00 0.00 3.16
142 143 1.679680 CATGGACTGATGGACAATGGC 59.320 52.381 0.00 0.00 0.00 4.40
143 144 0.697658 TGGACTGATGGACAATGGCA 59.302 50.000 0.00 0.00 0.00 4.92
144 145 1.098050 GGACTGATGGACAATGGCAC 58.902 55.000 0.00 0.00 0.00 5.01
145 146 1.098050 GACTGATGGACAATGGCACC 58.902 55.000 0.00 0.00 0.00 5.01
146 147 0.405198 ACTGATGGACAATGGCACCA 59.595 50.000 0.00 0.00 38.09 4.17
147 148 1.203038 ACTGATGGACAATGGCACCAA 60.203 47.619 0.00 0.00 37.24 3.67
148 149 2.104967 CTGATGGACAATGGCACCAAT 58.895 47.619 0.00 0.00 37.24 3.16
149 150 1.826096 TGATGGACAATGGCACCAATG 59.174 47.619 3.13 3.13 37.24 2.82
150 151 1.137479 GATGGACAATGGCACCAATGG 59.863 52.381 9.47 0.00 37.24 3.16
165 166 3.904136 CAATGGCTGGATTATTCCGTC 57.096 47.619 0.00 0.00 45.89 4.79
166 167 2.169832 ATGGCTGGATTATTCCGTCG 57.830 50.000 0.00 0.00 45.89 5.12
167 168 0.828022 TGGCTGGATTATTCCGTCGT 59.172 50.000 0.00 0.00 45.89 4.34
168 169 1.217882 GGCTGGATTATTCCGTCGTG 58.782 55.000 0.00 0.00 45.89 4.35
169 170 0.582005 GCTGGATTATTCCGTCGTGC 59.418 55.000 0.00 0.00 45.89 5.34
170 171 1.934589 CTGGATTATTCCGTCGTGCA 58.065 50.000 0.00 0.00 45.89 4.57
171 172 2.483876 CTGGATTATTCCGTCGTGCAT 58.516 47.619 0.00 0.00 45.89 3.96
172 173 3.649073 CTGGATTATTCCGTCGTGCATA 58.351 45.455 0.00 0.00 45.89 3.14
173 174 3.649073 TGGATTATTCCGTCGTGCATAG 58.351 45.455 0.00 0.00 45.89 2.23
174 175 3.319689 TGGATTATTCCGTCGTGCATAGA 59.680 43.478 0.00 0.00 45.89 1.98
175 176 4.021456 TGGATTATTCCGTCGTGCATAGAT 60.021 41.667 0.00 0.00 45.89 1.98
176 177 4.563184 GGATTATTCCGTCGTGCATAGATC 59.437 45.833 0.00 0.00 30.72 2.75
177 178 2.051879 ATTCCGTCGTGCATAGATCG 57.948 50.000 0.00 0.35 0.00 3.69
178 179 0.736636 TTCCGTCGTGCATAGATCGT 59.263 50.000 0.00 0.00 0.00 3.73
179 180 0.028902 TCCGTCGTGCATAGATCGTG 59.971 55.000 0.00 0.00 0.00 4.35
180 181 1.540607 CCGTCGTGCATAGATCGTGC 61.541 60.000 16.28 16.28 42.81 5.34
185 186 2.681660 TGCATAGATCGTGCAGCAC 58.318 52.632 20.31 16.21 46.76 4.40
186 187 0.176449 TGCATAGATCGTGCAGCACT 59.824 50.000 23.15 5.39 46.76 4.40
187 188 0.580578 GCATAGATCGTGCAGCACTG 59.419 55.000 23.15 16.05 42.08 3.66
188 189 1.931906 CATAGATCGTGCAGCACTGT 58.068 50.000 23.15 11.37 31.34 3.55
189 190 1.857217 CATAGATCGTGCAGCACTGTC 59.143 52.381 23.15 18.86 31.34 3.51
190 191 0.179163 TAGATCGTGCAGCACTGTCG 60.179 55.000 23.15 10.31 31.34 4.35
191 192 1.734477 GATCGTGCAGCACTGTCGT 60.734 57.895 23.15 4.50 34.12 4.34
192 193 1.678269 GATCGTGCAGCACTGTCGTC 61.678 60.000 23.15 9.74 34.12 4.20
193 194 2.147315 ATCGTGCAGCACTGTCGTCT 62.147 55.000 23.15 0.26 34.12 4.18
194 195 2.652079 CGTGCAGCACTGTCGTCTG 61.652 63.158 23.15 1.14 31.34 3.51
195 196 2.029518 TGCAGCACTGTCGTCTGG 59.970 61.111 0.00 0.00 0.00 3.86
196 197 2.740055 GCAGCACTGTCGTCTGGG 60.740 66.667 0.00 0.00 0.00 4.45
197 198 2.737180 CAGCACTGTCGTCTGGGT 59.263 61.111 0.00 0.00 0.00 4.51
198 199 1.964448 CAGCACTGTCGTCTGGGTA 59.036 57.895 0.00 0.00 0.00 3.69
199 200 0.109086 CAGCACTGTCGTCTGGGTAG 60.109 60.000 0.00 0.00 0.00 3.18
200 201 1.446272 GCACTGTCGTCTGGGTAGC 60.446 63.158 0.00 0.00 0.00 3.58
201 202 1.964448 CACTGTCGTCTGGGTAGCA 59.036 57.895 0.00 0.00 0.00 3.49
202 203 0.109086 CACTGTCGTCTGGGTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
203 204 0.539901 ACTGTCGTCTGGGTAGCAGT 60.540 55.000 0.00 0.00 33.05 4.40
204 205 0.603569 CTGTCGTCTGGGTAGCAGTT 59.396 55.000 0.00 0.00 0.00 3.16
216 217 4.990426 TGGGTAGCAGTTTCGTAGTAAAAC 59.010 41.667 0.00 0.00 36.97 2.43
217 218 4.990426 GGGTAGCAGTTTCGTAGTAAAACA 59.010 41.667 0.00 0.00 38.73 2.83
218 219 5.107337 GGGTAGCAGTTTCGTAGTAAAACAC 60.107 44.000 0.00 0.00 38.73 3.32
219 220 5.463061 GGTAGCAGTTTCGTAGTAAAACACA 59.537 40.000 2.05 0.00 38.73 3.72
220 221 5.399604 AGCAGTTTCGTAGTAAAACACAC 57.600 39.130 2.05 0.00 38.73 3.82
287 288 8.103305 ACGGAGGAATTATGTGCTAATATGAAT 58.897 33.333 0.00 0.00 29.63 2.57
443 450 7.775397 AAGATGGGATAAAAATCGCAAATTG 57.225 32.000 8.87 0.00 44.73 2.32
514 2632 2.214387 GCCAATGCAGAATTAGCCAC 57.786 50.000 0.00 0.00 37.47 5.01
527 2645 2.656947 TAGCCACCCATTAATCCAGC 57.343 50.000 0.00 0.00 0.00 4.85
540 2659 4.394712 CCAGCTCCTTCCCGCGTT 62.395 66.667 4.92 0.00 0.00 4.84
541 2660 3.121030 CAGCTCCTTCCCGCGTTG 61.121 66.667 4.92 0.00 0.00 4.10
542 2661 4.394712 AGCTCCTTCCCGCGTTGG 62.395 66.667 4.92 0.00 37.55 3.77
543 2662 4.388499 GCTCCTTCCCGCGTTGGA 62.388 66.667 4.92 1.85 42.00 3.53
544 2663 2.434359 CTCCTTCCCGCGTTGGAC 60.434 66.667 4.92 0.00 42.00 4.02
578 2697 2.419198 CAGAATCCTCTCCGCCCG 59.581 66.667 0.00 0.00 0.00 6.13
587 2845 0.727398 CTCTCCGCCCGAAAACAATC 59.273 55.000 0.00 0.00 0.00 2.67
588 2846 0.323629 TCTCCGCCCGAAAACAATCT 59.676 50.000 0.00 0.00 0.00 2.40
595 2853 3.058501 CGCCCGAAAACAATCTGTAAAGT 60.059 43.478 0.00 0.00 0.00 2.66
596 2854 4.473199 GCCCGAAAACAATCTGTAAAGTC 58.527 43.478 0.00 0.00 0.00 3.01
602 2860 6.353582 CGAAAACAATCTGTAAAGTCGTCAAC 59.646 38.462 0.00 0.00 0.00 3.18
608 2866 1.589320 TGTAAAGTCGTCAACGTGCAC 59.411 47.619 6.82 6.82 40.80 4.57
620 2878 2.533266 ACGTGCACTTCTGTCAGATT 57.467 45.000 16.19 0.00 0.00 2.40
622 2880 4.193826 ACGTGCACTTCTGTCAGATTAT 57.806 40.909 16.19 0.00 0.00 1.28
637 2895 6.322456 TGTCAGATTATGTTAGGGACAGAGAG 59.678 42.308 0.00 0.00 42.62 3.20
638 2896 5.835819 TCAGATTATGTTAGGGACAGAGAGG 59.164 44.000 0.00 0.00 42.62 3.69
650 2908 3.915575 GAGAGGTCTCGCCCGTAA 58.084 61.111 0.00 0.00 38.26 3.18
651 2909 1.728672 GAGAGGTCTCGCCCGTAAG 59.271 63.158 0.00 0.00 38.26 2.34
652 2910 1.726533 GAGAGGTCTCGCCCGTAAGG 61.727 65.000 0.00 0.00 45.38 2.69
653 2911 2.496284 AGAGGTCTCGCCCGTAAGGT 62.496 60.000 0.00 0.00 46.04 3.50
654 2912 3.138205 AGAGGTCTCGCCCGTAAGGTA 62.138 57.143 0.00 0.00 46.04 3.08
655 2913 4.410256 AGAGGTCTCGCCCGTAAGGTAT 62.410 54.545 0.00 0.00 46.04 2.73
687 2959 3.067180 TGTGCAGGCTCTTTCTTTTTCTG 59.933 43.478 0.00 0.00 0.00 3.02
689 2961 2.919807 GCAGGCTCTTTCTTTTTCTGCG 60.920 50.000 0.00 0.00 37.10 5.18
690 2962 1.882623 AGGCTCTTTCTTTTTCTGCGG 59.117 47.619 0.00 0.00 0.00 5.69
691 2963 1.880027 GGCTCTTTCTTTTTCTGCGGA 59.120 47.619 0.00 0.00 0.00 5.54
692 2964 2.489722 GGCTCTTTCTTTTTCTGCGGAT 59.510 45.455 0.00 0.00 0.00 4.18
711 2984 8.810652 TGCGGATAAATAAATTAATCAAAGCC 57.189 30.769 0.00 0.00 0.00 4.35
751 3871 8.225107 CGTCGTAAAATATTCAGAAAAAGGTCA 58.775 33.333 0.00 0.00 0.00 4.02
754 3874 8.013378 CGTAAAATATTCAGAAAAAGGTCACGT 58.987 33.333 0.00 0.00 0.00 4.49
757 3877 9.840427 AAAATATTCAGAAAAAGGTCACGTATG 57.160 29.630 0.00 0.00 0.00 2.39
761 3881 6.480524 TCAGAAAAAGGTCACGTATGAATG 57.519 37.500 0.00 0.00 36.31 2.67
764 3884 7.390440 TCAGAAAAAGGTCACGTATGAATGAAT 59.610 33.333 0.00 0.00 36.31 2.57
765 3885 8.664798 CAGAAAAAGGTCACGTATGAATGAATA 58.335 33.333 0.00 0.00 36.31 1.75
767 3887 8.561738 AAAAAGGTCACGTATGAATGAATACT 57.438 30.769 0.00 0.00 36.31 2.12
768 3888 7.539712 AAAGGTCACGTATGAATGAATACTG 57.460 36.000 0.00 0.00 36.31 2.74
769 3889 6.222038 AGGTCACGTATGAATGAATACTGT 57.778 37.500 0.00 0.00 36.31 3.55
770 3890 7.342769 AGGTCACGTATGAATGAATACTGTA 57.657 36.000 0.00 0.00 36.31 2.74
771 3891 7.201145 AGGTCACGTATGAATGAATACTGTAC 58.799 38.462 0.00 0.00 36.31 2.90
772 3892 7.068348 AGGTCACGTATGAATGAATACTGTACT 59.932 37.037 0.00 0.00 36.31 2.73
773 3893 8.347771 GGTCACGTATGAATGAATACTGTACTA 58.652 37.037 0.00 0.00 36.31 1.82
774 3894 9.167239 GTCACGTATGAATGAATACTGTACTAC 57.833 37.037 0.00 0.00 36.31 2.73
784 3904 7.767745 TGAATACTGTACTACTACGTCTCAG 57.232 40.000 0.00 0.00 0.00 3.35
792 3912 2.949451 ACTACGTCTCAGCAGGAATG 57.051 50.000 0.00 0.00 0.00 2.67
798 3918 2.079925 GTCTCAGCAGGAATGGTTCAC 58.920 52.381 0.00 0.00 0.00 3.18
803 3923 1.926511 GCAGGAATGGTTCACGCAGG 61.927 60.000 0.00 0.00 0.00 4.85
805 3925 0.321653 AGGAATGGTTCACGCAGGAC 60.322 55.000 0.00 0.00 0.00 3.85
836 3956 0.310854 GTTGACCCAGAAACGGCAAG 59.689 55.000 0.00 0.00 0.00 4.01
837 3957 1.452145 TTGACCCAGAAACGGCAAGC 61.452 55.000 0.00 0.00 0.00 4.01
838 3958 2.966309 GACCCAGAAACGGCAAGCG 61.966 63.158 0.00 0.00 0.00 4.68
839 3959 2.978010 CCCAGAAACGGCAAGCGT 60.978 61.111 0.00 0.00 0.00 5.07
843 3963 0.165944 CAGAAACGGCAAGCGTAAGG 59.834 55.000 0.00 0.00 38.28 2.69
857 3977 1.836383 GTAAGGCGTGTCGGTAGATG 58.164 55.000 0.00 0.00 0.00 2.90
858 3978 1.133790 GTAAGGCGTGTCGGTAGATGT 59.866 52.381 0.00 0.00 0.00 3.06
859 3979 1.466856 AAGGCGTGTCGGTAGATGTA 58.533 50.000 0.00 0.00 0.00 2.29
860 3980 1.022735 AGGCGTGTCGGTAGATGTAG 58.977 55.000 0.00 0.00 0.00 2.74
861 3981 1.019673 GGCGTGTCGGTAGATGTAGA 58.980 55.000 0.00 0.00 0.00 2.59
873 3993 5.453339 CGGTAGATGTAGATTGGTCATTGGT 60.453 44.000 0.00 0.00 0.00 3.67
881 4009 3.440173 AGATTGGTCATTGGTGCGTTAAG 59.560 43.478 0.00 0.00 0.00 1.85
885 4013 3.936453 TGGTCATTGGTGCGTTAAGTATC 59.064 43.478 0.00 0.00 0.00 2.24
888 4016 3.861113 TCATTGGTGCGTTAAGTATCGTC 59.139 43.478 0.00 0.00 0.00 4.20
894 4022 1.406539 GCGTTAAGTATCGTCTGGGGA 59.593 52.381 0.00 0.00 0.00 4.81
895 4023 2.797439 GCGTTAAGTATCGTCTGGGGAC 60.797 54.545 0.00 0.00 38.97 4.46
896 4024 2.686915 CGTTAAGTATCGTCTGGGGACT 59.313 50.000 0.00 0.00 40.10 3.85
897 4025 3.488721 CGTTAAGTATCGTCTGGGGACTG 60.489 52.174 0.00 0.00 40.10 3.51
918 4046 1.589320 GTTCGTTGACAGTGTTGCGTA 59.411 47.619 0.00 0.00 0.00 4.42
958 4090 4.093556 GCGGGCAAAAGCAGACTATATATC 59.906 45.833 0.00 0.00 0.00 1.63
962 4094 6.712547 GGGCAAAAGCAGACTATATATCTGTT 59.287 38.462 16.70 11.67 44.60 3.16
970 4108 5.928839 CAGACTATATATCTGTTGTGGCACC 59.071 44.000 16.26 0.43 39.04 5.01
999 4148 1.516386 CGCTAACGGTGTGATCGCT 60.516 57.895 7.94 0.00 34.97 4.93
1107 4259 3.775654 CAGGGACACGGCTCCTCC 61.776 72.222 1.08 0.00 0.00 4.30
1257 4424 3.207669 CCTGATGCTGCGCCTTCC 61.208 66.667 4.18 0.00 0.00 3.46
1462 4629 3.317993 CACCGTGAAAAATTCCTGAACCT 59.682 43.478 0.00 0.00 0.00 3.50
1473 4646 0.249868 CCTGAACCTTCGTCACAGCA 60.250 55.000 0.00 0.00 0.00 4.41
1476 4649 1.079503 GAACCTTCGTCACAGCATCC 58.920 55.000 0.00 0.00 0.00 3.51
1580 4753 2.617250 TGATGTTTGCTGTTGATCGC 57.383 45.000 0.00 0.00 0.00 4.58
1619 4864 4.424626 CGTGCAGACAAAGCTAGAGATAA 58.575 43.478 0.00 0.00 0.00 1.75
1633 4878 4.871993 AGAGATAAAGCTTGCACATTCG 57.128 40.909 0.00 0.00 0.00 3.34
1678 4932 4.201891 CGACTTTGGCTACGTCTACTGTAT 60.202 45.833 0.00 0.00 0.00 2.29
1679 4933 5.007039 CGACTTTGGCTACGTCTACTGTATA 59.993 44.000 0.00 0.00 0.00 1.47
1684 4938 9.740239 CTTTGGCTACGTCTACTGTATATTTTA 57.260 33.333 0.00 0.00 0.00 1.52
1685 4939 9.740239 TTTGGCTACGTCTACTGTATATTTTAG 57.260 33.333 0.00 0.00 0.00 1.85
1686 4940 8.681486 TGGCTACGTCTACTGTATATTTTAGA 57.319 34.615 0.00 0.00 0.00 2.10
1708 4962 9.925545 TTAGATAAATAAAAGGGGGTAGAAACC 57.074 33.333 0.00 0.00 45.97 3.27
1731 4985 6.584185 CCCCCGGTCCTATTTTTATAAATG 57.416 41.667 0.00 0.00 35.61 2.32
1732 4986 6.308566 CCCCCGGTCCTATTTTTATAAATGA 58.691 40.000 0.00 0.00 35.61 2.57
1733 4987 6.778559 CCCCCGGTCCTATTTTTATAAATGAA 59.221 38.462 0.00 0.00 35.61 2.57
1734 4988 7.288158 CCCCCGGTCCTATTTTTATAAATGAAA 59.712 37.037 0.00 0.00 35.61 2.69
1735 4989 8.139350 CCCCGGTCCTATTTTTATAAATGAAAC 58.861 37.037 0.00 0.00 35.61 2.78
1736 4990 8.139350 CCCGGTCCTATTTTTATAAATGAAACC 58.861 37.037 0.00 2.66 35.61 3.27
1737 4991 8.688151 CCGGTCCTATTTTTATAAATGAAACCA 58.312 33.333 0.00 0.00 35.61 3.67
1738 4992 9.730420 CGGTCCTATTTTTATAAATGAAACCAG 57.270 33.333 0.00 0.00 35.61 4.00
1746 5000 9.757227 TTTTTATAAATGAAACCAGGAACAGTG 57.243 29.630 0.00 0.00 0.00 3.66
1747 5001 8.472007 TTTATAAATGAAACCAGGAACAGTGT 57.528 30.769 0.00 0.00 0.00 3.55
1748 5002 4.918810 AAATGAAACCAGGAACAGTGTC 57.081 40.909 0.00 0.00 0.00 3.67
1749 5003 1.948104 TGAAACCAGGAACAGTGTCG 58.052 50.000 0.00 0.00 0.00 4.35
1750 5004 1.483004 TGAAACCAGGAACAGTGTCGA 59.517 47.619 0.00 0.00 0.00 4.20
1751 5005 2.093394 TGAAACCAGGAACAGTGTCGAA 60.093 45.455 0.00 0.00 0.00 3.71
1752 5006 2.702592 AACCAGGAACAGTGTCGAAA 57.297 45.000 0.00 0.00 0.00 3.46
1753 5007 2.240493 ACCAGGAACAGTGTCGAAAG 57.760 50.000 0.00 0.00 0.00 2.62
1754 5008 1.760613 ACCAGGAACAGTGTCGAAAGA 59.239 47.619 0.00 0.00 38.16 2.52
1755 5009 2.169769 ACCAGGAACAGTGTCGAAAGAA 59.830 45.455 0.00 0.00 45.01 2.52
1756 5010 2.544267 CCAGGAACAGTGTCGAAAGAAC 59.456 50.000 0.00 0.00 45.01 3.01
1757 5011 3.194861 CAGGAACAGTGTCGAAAGAACA 58.805 45.455 0.00 0.00 45.01 3.18
1758 5012 3.621268 CAGGAACAGTGTCGAAAGAACAA 59.379 43.478 0.00 0.00 45.01 2.83
1759 5013 4.094294 CAGGAACAGTGTCGAAAGAACAAA 59.906 41.667 0.00 0.00 45.01 2.83
1760 5014 4.881850 AGGAACAGTGTCGAAAGAACAAAT 59.118 37.500 0.00 0.00 45.01 2.32
1761 5015 4.970003 GGAACAGTGTCGAAAGAACAAATG 59.030 41.667 0.00 0.00 45.01 2.32
1762 5016 5.448632 GGAACAGTGTCGAAAGAACAAATGT 60.449 40.000 0.00 0.00 45.01 2.71
1763 5017 5.560966 ACAGTGTCGAAAGAACAAATGTT 57.439 34.783 0.00 0.00 45.01 2.71
1764 5018 5.949735 ACAGTGTCGAAAGAACAAATGTTT 58.050 33.333 0.00 0.00 45.01 2.83
1765 5019 6.027749 ACAGTGTCGAAAGAACAAATGTTTC 58.972 36.000 0.00 0.00 45.01 2.78
1766 5020 5.455525 CAGTGTCGAAAGAACAAATGTTTCC 59.544 40.000 0.00 0.00 45.01 3.13
1767 5021 4.738252 GTGTCGAAAGAACAAATGTTTCCC 59.262 41.667 0.00 0.00 45.01 3.97
1768 5022 4.202070 TGTCGAAAGAACAAATGTTTCCCC 60.202 41.667 0.00 0.00 45.01 4.81
1769 5023 3.319689 TCGAAAGAACAAATGTTTCCCCC 59.680 43.478 0.00 0.00 37.89 5.40
1786 5040 3.611025 CCCCCAGAGGCCAAATAATAA 57.389 47.619 5.01 0.00 0.00 1.40
1787 5041 3.922375 CCCCCAGAGGCCAAATAATAAA 58.078 45.455 5.01 0.00 0.00 1.40
1788 5042 4.294347 CCCCCAGAGGCCAAATAATAAAA 58.706 43.478 5.01 0.00 0.00 1.52
1789 5043 4.344968 CCCCCAGAGGCCAAATAATAAAAG 59.655 45.833 5.01 0.00 0.00 2.27
1790 5044 5.208121 CCCCAGAGGCCAAATAATAAAAGA 58.792 41.667 5.01 0.00 0.00 2.52
1791 5045 5.069119 CCCCAGAGGCCAAATAATAAAAGAC 59.931 44.000 5.01 0.00 0.00 3.01
1792 5046 5.221048 CCCAGAGGCCAAATAATAAAAGACG 60.221 44.000 5.01 0.00 0.00 4.18
1793 5047 5.357032 CCAGAGGCCAAATAATAAAAGACGT 59.643 40.000 5.01 0.00 0.00 4.34
1794 5048 6.458342 CCAGAGGCCAAATAATAAAAGACGTC 60.458 42.308 7.70 7.70 0.00 4.34
1795 5049 6.316390 CAGAGGCCAAATAATAAAAGACGTCT 59.684 38.462 13.58 13.58 0.00 4.18
1816 5072 7.973388 ACGTCTACTGTATATATACGGACTCTC 59.027 40.741 30.16 17.37 41.15 3.20
1847 5103 0.818040 ACCGGCGCATTTCCTATTCC 60.818 55.000 10.83 0.00 0.00 3.01
1854 5110 2.540101 CGCATTTCCTATTCCACGTCTC 59.460 50.000 0.00 0.00 0.00 3.36
1870 5126 2.352030 CGTCTCCAACGCCAGTTACTTA 60.352 50.000 0.00 0.00 45.76 2.24
1902 5158 9.270640 TGAGTAATAAAAACGCCAGTTACTTTA 57.729 29.630 0.00 0.00 40.18 1.85
1915 5171 8.621286 CGCCAGTTACTTTAAAAATATCTCCAT 58.379 33.333 0.00 0.00 0.00 3.41
1926 5182 1.812686 TATCTCCATACGGGCGCACC 61.813 60.000 10.83 7.36 36.21 5.01
1959 5215 2.067197 GGCCGGCCCATCTTATACT 58.933 57.895 36.64 0.00 0.00 2.12
1961 5217 0.977395 GCCGGCCCATCTTATACTCT 59.023 55.000 18.11 0.00 0.00 3.24
1994 5250 8.690203 TCATTCTGTAAAACCTTCAAAGATGA 57.310 30.769 0.00 0.00 0.00 2.92
1995 5251 8.786898 TCATTCTGTAAAACCTTCAAAGATGAG 58.213 33.333 0.00 0.00 36.78 2.90
2004 7811 4.407296 ACCTTCAAAGATGAGCCTAGTAGG 59.593 45.833 12.27 12.27 36.78 3.18
2099 7964 9.872721 TTCAAATAAGAAACGTAAACCCTTTTT 57.127 25.926 0.00 0.00 0.00 1.94
2128 7993 8.368668 TGGTTGGTTTTCTTCTGTTTTTCTTTA 58.631 29.630 0.00 0.00 0.00 1.85
2277 8145 9.855021 AAACCATAATTTTTCCTAATTCGTGAG 57.145 29.630 0.00 0.00 0.00 3.51
2278 8146 8.575649 ACCATAATTTTTCCTAATTCGTGAGT 57.424 30.769 0.00 0.00 0.00 3.41
2279 8147 9.020731 ACCATAATTTTTCCTAATTCGTGAGTT 57.979 29.630 0.00 0.00 0.00 3.01
2280 8148 9.855021 CCATAATTTTTCCTAATTCGTGAGTTT 57.145 29.630 0.00 0.00 0.00 2.66
2388 8256 8.918202 TTTCAAACCTATGAACTATGTCAACT 57.082 30.769 0.00 0.00 38.95 3.16
2389 8257 8.547967 TTCAAACCTATGAACTATGTCAACTC 57.452 34.615 0.00 0.00 34.50 3.01
2390 8258 7.103641 TCAAACCTATGAACTATGTCAACTCC 58.896 38.462 0.00 0.00 0.00 3.85
2391 8259 6.620877 AACCTATGAACTATGTCAACTCCA 57.379 37.500 0.00 0.00 0.00 3.86
2392 8260 6.814954 ACCTATGAACTATGTCAACTCCAT 57.185 37.500 0.00 0.00 0.00 3.41
2393 8261 6.586344 ACCTATGAACTATGTCAACTCCATG 58.414 40.000 0.00 0.00 0.00 3.66
2394 8262 6.384015 ACCTATGAACTATGTCAACTCCATGA 59.616 38.462 0.00 0.00 0.00 3.07
2395 8263 7.071698 ACCTATGAACTATGTCAACTCCATGAT 59.928 37.037 0.00 0.00 0.00 2.45
2396 8264 7.935755 CCTATGAACTATGTCAACTCCATGATT 59.064 37.037 0.00 0.00 0.00 2.57
2397 8265 9.334947 CTATGAACTATGTCAACTCCATGATTT 57.665 33.333 0.00 0.00 0.00 2.17
2398 8266 8.585471 ATGAACTATGTCAACTCCATGATTTT 57.415 30.769 0.00 0.00 0.00 1.82
2399 8267 8.408043 TGAACTATGTCAACTCCATGATTTTT 57.592 30.769 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.117145 GCACACGATTCATTAAAATATGGTATG 57.883 33.333 0.00 0.00 0.00 2.39
6 7 8.845227 TGCACACGATTCATTAAAATATGGTAT 58.155 29.630 0.00 0.00 0.00 2.73
7 8 8.214721 TGCACACGATTCATTAAAATATGGTA 57.785 30.769 0.00 0.00 0.00 3.25
8 9 7.094508 TGCACACGATTCATTAAAATATGGT 57.905 32.000 0.00 0.00 0.00 3.55
9 10 9.676195 TTATGCACACGATTCATTAAAATATGG 57.324 29.630 0.00 0.00 0.00 2.74
13 14 9.800433 TCATTTATGCACACGATTCATTAAAAT 57.200 25.926 0.00 0.00 0.00 1.82
14 15 9.631452 TTCATTTATGCACACGATTCATTAAAA 57.369 25.926 0.00 0.00 0.00 1.52
15 16 9.800433 ATTCATTTATGCACACGATTCATTAAA 57.200 25.926 0.00 0.00 0.00 1.52
16 17 9.800433 AATTCATTTATGCACACGATTCATTAA 57.200 25.926 0.00 0.00 0.00 1.40
17 18 9.449550 GAATTCATTTATGCACACGATTCATTA 57.550 29.630 0.00 0.00 0.00 1.90
18 19 7.975058 TGAATTCATTTATGCACACGATTCATT 59.025 29.630 3.38 0.00 0.00 2.57
19 20 7.482474 TGAATTCATTTATGCACACGATTCAT 58.518 30.769 3.38 0.00 0.00 2.57
20 21 6.850555 TGAATTCATTTATGCACACGATTCA 58.149 32.000 3.38 0.00 0.00 2.57
21 22 6.415867 CCTGAATTCATTTATGCACACGATTC 59.584 38.462 8.96 0.00 0.00 2.52
22 23 6.127647 ACCTGAATTCATTTATGCACACGATT 60.128 34.615 8.96 0.00 0.00 3.34
23 24 5.357878 ACCTGAATTCATTTATGCACACGAT 59.642 36.000 8.96 0.00 0.00 3.73
24 25 4.699735 ACCTGAATTCATTTATGCACACGA 59.300 37.500 8.96 0.00 0.00 4.35
25 26 4.985413 ACCTGAATTCATTTATGCACACG 58.015 39.130 8.96 0.00 0.00 4.49
26 27 5.030295 CGACCTGAATTCATTTATGCACAC 58.970 41.667 8.96 0.00 0.00 3.82
27 28 4.699735 ACGACCTGAATTCATTTATGCACA 59.300 37.500 8.96 0.00 0.00 4.57
28 29 5.235305 ACGACCTGAATTCATTTATGCAC 57.765 39.130 8.96 0.00 0.00 4.57
29 30 6.112734 ACTACGACCTGAATTCATTTATGCA 58.887 36.000 8.96 0.00 0.00 3.96
30 31 6.604735 ACTACGACCTGAATTCATTTATGC 57.395 37.500 8.96 0.00 0.00 3.14
33 34 8.938906 GGTTTTACTACGACCTGAATTCATTTA 58.061 33.333 8.96 0.00 0.00 1.40
34 35 7.446013 TGGTTTTACTACGACCTGAATTCATTT 59.554 33.333 8.96 0.00 34.52 2.32
35 36 6.938030 TGGTTTTACTACGACCTGAATTCATT 59.062 34.615 8.96 0.00 34.52 2.57
36 37 6.469410 TGGTTTTACTACGACCTGAATTCAT 58.531 36.000 8.96 0.00 34.52 2.57
37 38 5.856156 TGGTTTTACTACGACCTGAATTCA 58.144 37.500 8.12 8.12 34.52 2.57
38 39 5.163884 GCTGGTTTTACTACGACCTGAATTC 60.164 44.000 0.00 0.00 35.22 2.17
39 40 4.694037 GCTGGTTTTACTACGACCTGAATT 59.306 41.667 0.00 0.00 35.22 2.17
40 41 4.251268 GCTGGTTTTACTACGACCTGAAT 58.749 43.478 0.00 0.00 35.22 2.57
41 42 3.069872 TGCTGGTTTTACTACGACCTGAA 59.930 43.478 0.00 0.00 35.22 3.02
42 43 2.629137 TGCTGGTTTTACTACGACCTGA 59.371 45.455 0.00 0.00 35.22 3.86
43 44 2.993899 CTGCTGGTTTTACTACGACCTG 59.006 50.000 0.00 0.00 36.02 4.00
44 45 2.631545 ACTGCTGGTTTTACTACGACCT 59.368 45.455 0.00 0.00 34.52 3.85
45 46 2.735134 CACTGCTGGTTTTACTACGACC 59.265 50.000 0.00 0.00 0.00 4.79
46 47 2.157085 GCACTGCTGGTTTTACTACGAC 59.843 50.000 0.00 0.00 0.00 4.34
47 48 2.036733 AGCACTGCTGGTTTTACTACGA 59.963 45.455 1.67 0.00 37.57 3.43
48 49 2.413837 AGCACTGCTGGTTTTACTACG 58.586 47.619 1.67 0.00 37.57 3.51
49 50 6.035758 GTGTATAGCACTGCTGGTTTTACTAC 59.964 42.308 14.15 3.72 44.41 2.73
50 51 6.103997 GTGTATAGCACTGCTGGTTTTACTA 58.896 40.000 14.15 0.00 44.41 1.82
51 52 4.935808 GTGTATAGCACTGCTGGTTTTACT 59.064 41.667 14.15 0.00 44.41 2.24
52 53 5.217895 GTGTATAGCACTGCTGGTTTTAC 57.782 43.478 14.15 7.99 44.41 2.01
65 66 4.982295 GTGCATTCTATCGTGTGTATAGCA 59.018 41.667 0.00 0.00 0.00 3.49
66 67 4.982295 TGTGCATTCTATCGTGTGTATAGC 59.018 41.667 0.00 0.00 0.00 2.97
67 68 5.115622 CGTGTGCATTCTATCGTGTGTATAG 59.884 44.000 0.00 0.00 0.00 1.31
68 69 4.973663 CGTGTGCATTCTATCGTGTGTATA 59.026 41.667 0.00 0.00 0.00 1.47
69 70 3.796717 CGTGTGCATTCTATCGTGTGTAT 59.203 43.478 0.00 0.00 0.00 2.29
70 71 3.119779 TCGTGTGCATTCTATCGTGTGTA 60.120 43.478 0.00 0.00 0.00 2.90
71 72 1.992667 CGTGTGCATTCTATCGTGTGT 59.007 47.619 0.00 0.00 0.00 3.72
72 73 2.028045 GTCGTGTGCATTCTATCGTGTG 59.972 50.000 0.00 0.00 0.00 3.82
73 74 2.094700 AGTCGTGTGCATTCTATCGTGT 60.095 45.455 0.00 0.00 0.00 4.49
74 75 2.530177 AGTCGTGTGCATTCTATCGTG 58.470 47.619 0.00 0.00 0.00 4.35
75 76 2.941453 AGTCGTGTGCATTCTATCGT 57.059 45.000 0.00 0.00 0.00 3.73
76 77 6.303496 GTCTATAAGTCGTGTGCATTCTATCG 59.697 42.308 0.00 0.00 0.00 2.92
77 78 6.303496 CGTCTATAAGTCGTGTGCATTCTATC 59.697 42.308 0.00 0.00 0.00 2.08
78 79 6.017357 TCGTCTATAAGTCGTGTGCATTCTAT 60.017 38.462 0.00 0.00 0.00 1.98
79 80 5.295045 TCGTCTATAAGTCGTGTGCATTCTA 59.705 40.000 0.00 0.00 0.00 2.10
80 81 4.095932 TCGTCTATAAGTCGTGTGCATTCT 59.904 41.667 0.00 0.00 0.00 2.40
81 82 4.348656 TCGTCTATAAGTCGTGTGCATTC 58.651 43.478 0.00 0.00 0.00 2.67
82 83 4.365899 TCGTCTATAAGTCGTGTGCATT 57.634 40.909 0.00 0.00 0.00 3.56
83 84 4.569761 ATCGTCTATAAGTCGTGTGCAT 57.430 40.909 0.00 0.00 0.00 3.96
84 85 4.573607 ACTATCGTCTATAAGTCGTGTGCA 59.426 41.667 0.00 0.00 0.00 4.57
85 86 5.093169 ACTATCGTCTATAAGTCGTGTGC 57.907 43.478 0.00 0.00 0.00 4.57
86 87 9.661187 ATTTAACTATCGTCTATAAGTCGTGTG 57.339 33.333 0.00 0.00 0.00 3.82
87 88 9.875675 GATTTAACTATCGTCTATAAGTCGTGT 57.124 33.333 0.00 0.00 0.00 4.49
88 89 9.327529 GGATTTAACTATCGTCTATAAGTCGTG 57.672 37.037 0.00 0.00 0.00 4.35
89 90 9.060347 TGGATTTAACTATCGTCTATAAGTCGT 57.940 33.333 0.00 0.00 0.00 4.34
90 91 9.544314 CTGGATTTAACTATCGTCTATAAGTCG 57.456 37.037 0.00 0.00 0.00 4.18
91 92 9.344309 GCTGGATTTAACTATCGTCTATAAGTC 57.656 37.037 0.00 0.00 0.00 3.01
92 93 8.305317 GGCTGGATTTAACTATCGTCTATAAGT 58.695 37.037 0.00 0.00 0.00 2.24
93 94 7.485277 CGGCTGGATTTAACTATCGTCTATAAG 59.515 40.741 0.00 0.00 0.00 1.73
94 95 7.310664 CGGCTGGATTTAACTATCGTCTATAA 58.689 38.462 0.00 0.00 0.00 0.98
95 96 6.127814 CCGGCTGGATTTAACTATCGTCTATA 60.128 42.308 5.28 0.00 37.49 1.31
96 97 5.336531 CCGGCTGGATTTAACTATCGTCTAT 60.337 44.000 5.28 0.00 37.49 1.98
97 98 4.022589 CCGGCTGGATTTAACTATCGTCTA 60.023 45.833 5.28 0.00 37.49 2.59
98 99 3.243771 CCGGCTGGATTTAACTATCGTCT 60.244 47.826 5.28 0.00 37.49 4.18
99 100 3.057734 CCGGCTGGATTTAACTATCGTC 58.942 50.000 5.28 0.00 37.49 4.20
100 101 2.696707 TCCGGCTGGATTTAACTATCGT 59.303 45.455 11.27 0.00 40.17 3.73
101 102 3.380479 TCCGGCTGGATTTAACTATCG 57.620 47.619 11.27 0.00 40.17 2.92
112 113 2.284625 AGTCCATGTCCGGCTGGA 60.285 61.111 11.27 11.27 43.88 3.86
113 114 1.976132 ATCAGTCCATGTCCGGCTGG 61.976 60.000 4.71 4.71 33.56 4.85
114 115 0.812811 CATCAGTCCATGTCCGGCTG 60.813 60.000 0.00 0.00 33.84 4.85
115 116 1.524002 CATCAGTCCATGTCCGGCT 59.476 57.895 0.00 0.00 0.00 5.52
116 117 1.524621 CCATCAGTCCATGTCCGGC 60.525 63.158 0.00 0.00 0.00 6.13
117 118 0.179073 GTCCATCAGTCCATGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
118 119 0.536724 TGTCCATCAGTCCATGTCCG 59.463 55.000 0.00 0.00 0.00 4.79
119 120 2.787473 TTGTCCATCAGTCCATGTCC 57.213 50.000 0.00 0.00 0.00 4.02
120 121 2.947652 CCATTGTCCATCAGTCCATGTC 59.052 50.000 0.00 0.00 0.00 3.06
121 122 2.947243 GCCATTGTCCATCAGTCCATGT 60.947 50.000 0.00 0.00 0.00 3.21
122 123 1.679680 GCCATTGTCCATCAGTCCATG 59.320 52.381 0.00 0.00 0.00 3.66
123 124 1.285667 TGCCATTGTCCATCAGTCCAT 59.714 47.619 0.00 0.00 0.00 3.41
124 125 0.697658 TGCCATTGTCCATCAGTCCA 59.302 50.000 0.00 0.00 0.00 4.02
125 126 1.098050 GTGCCATTGTCCATCAGTCC 58.902 55.000 0.00 0.00 0.00 3.85
126 127 1.098050 GGTGCCATTGTCCATCAGTC 58.902 55.000 0.00 0.00 0.00 3.51
127 128 0.405198 TGGTGCCATTGTCCATCAGT 59.595 50.000 0.00 0.00 0.00 3.41
128 129 1.548081 TTGGTGCCATTGTCCATCAG 58.452 50.000 0.00 0.00 0.00 2.90
129 130 1.826096 CATTGGTGCCATTGTCCATCA 59.174 47.619 5.26 0.00 0.00 3.07
130 131 1.137479 CCATTGGTGCCATTGTCCATC 59.863 52.381 10.89 0.00 0.00 3.51
131 132 1.196911 CCATTGGTGCCATTGTCCAT 58.803 50.000 10.89 0.00 0.00 3.41
132 133 1.543065 GCCATTGGTGCCATTGTCCA 61.543 55.000 4.26 0.00 0.00 4.02
133 134 1.218854 GCCATTGGTGCCATTGTCC 59.781 57.895 4.26 0.88 0.00 4.02
134 135 0.108520 CAGCCATTGGTGCCATTGTC 60.109 55.000 4.26 0.43 32.48 3.18
135 136 1.546589 CCAGCCATTGGTGCCATTGT 61.547 55.000 4.26 0.00 42.41 2.71
136 137 1.219664 CCAGCCATTGGTGCCATTG 59.780 57.895 4.26 6.22 42.41 2.82
137 138 3.716381 CCAGCCATTGGTGCCATT 58.284 55.556 4.26 0.00 42.41 3.16
141 142 5.404939 CGGAATAATCCAGCCATTGGTGC 62.405 52.174 4.26 0.00 46.97 5.01
142 143 2.294233 CGGAATAATCCAGCCATTGGTG 59.706 50.000 4.26 1.74 46.97 4.17
143 144 2.091885 ACGGAATAATCCAGCCATTGGT 60.092 45.455 4.26 0.00 46.97 3.67
144 145 2.554032 GACGGAATAATCCAGCCATTGG 59.446 50.000 0.00 0.00 46.97 3.16
145 146 2.224079 CGACGGAATAATCCAGCCATTG 59.776 50.000 0.00 0.00 46.97 2.82
146 147 2.158813 ACGACGGAATAATCCAGCCATT 60.159 45.455 0.00 0.00 46.97 3.16
147 148 1.416401 ACGACGGAATAATCCAGCCAT 59.584 47.619 0.00 0.00 46.97 4.40
148 149 0.828022 ACGACGGAATAATCCAGCCA 59.172 50.000 0.00 0.00 46.97 4.75
149 150 1.217882 CACGACGGAATAATCCAGCC 58.782 55.000 0.00 0.00 46.97 4.85
150 151 0.582005 GCACGACGGAATAATCCAGC 59.418 55.000 0.00 0.00 46.97 4.85
151 152 1.934589 TGCACGACGGAATAATCCAG 58.065 50.000 0.00 0.00 46.97 3.86
152 153 2.613026 ATGCACGACGGAATAATCCA 57.387 45.000 0.00 0.00 46.97 3.41
153 154 3.909430 TCTATGCACGACGGAATAATCC 58.091 45.455 0.00 0.00 42.80 3.01
154 155 4.263209 CGATCTATGCACGACGGAATAATC 59.737 45.833 0.00 0.11 0.00 1.75
155 156 4.166523 CGATCTATGCACGACGGAATAAT 58.833 43.478 0.00 0.00 0.00 1.28
156 157 3.004002 ACGATCTATGCACGACGGAATAA 59.996 43.478 0.00 0.00 0.00 1.40
157 158 2.551032 ACGATCTATGCACGACGGAATA 59.449 45.455 0.00 0.00 0.00 1.75
158 159 1.337071 ACGATCTATGCACGACGGAAT 59.663 47.619 0.00 0.00 0.00 3.01
159 160 0.736636 ACGATCTATGCACGACGGAA 59.263 50.000 0.00 0.00 0.00 4.30
160 161 0.028902 CACGATCTATGCACGACGGA 59.971 55.000 0.00 0.00 0.00 4.69
161 162 1.540607 GCACGATCTATGCACGACGG 61.541 60.000 12.56 0.00 42.88 4.79
162 163 1.840061 GCACGATCTATGCACGACG 59.160 57.895 12.56 0.00 42.88 5.12
168 169 0.580578 CAGTGCTGCACGATCTATGC 59.419 55.000 25.39 10.96 43.68 3.14
169 170 1.857217 GACAGTGCTGCACGATCTATG 59.143 52.381 25.39 19.04 39.64 2.23
170 171 1.534805 CGACAGTGCTGCACGATCTAT 60.535 52.381 25.39 5.63 39.64 1.98
171 172 0.179163 CGACAGTGCTGCACGATCTA 60.179 55.000 25.39 0.00 39.64 1.98
172 173 1.445066 CGACAGTGCTGCACGATCT 60.445 57.895 25.39 10.24 39.64 2.75
173 174 1.678269 GACGACAGTGCTGCACGATC 61.678 60.000 25.39 23.37 39.64 3.69
174 175 1.734477 GACGACAGTGCTGCACGAT 60.734 57.895 25.39 17.99 39.64 3.73
175 176 2.354656 GACGACAGTGCTGCACGA 60.355 61.111 25.39 0.00 39.64 4.35
176 177 2.355126 AGACGACAGTGCTGCACG 60.355 61.111 25.39 21.39 39.64 5.34
177 178 2.313172 CCAGACGACAGTGCTGCAC 61.313 63.158 24.59 24.59 34.10 4.57
178 179 2.029518 CCAGACGACAGTGCTGCA 59.970 61.111 0.00 0.00 0.00 4.41
179 180 2.154798 TACCCAGACGACAGTGCTGC 62.155 60.000 0.00 0.00 0.00 5.25
180 181 0.109086 CTACCCAGACGACAGTGCTG 60.109 60.000 0.00 0.00 0.00 4.41
181 182 1.878656 GCTACCCAGACGACAGTGCT 61.879 60.000 0.00 0.00 0.00 4.40
182 183 1.446272 GCTACCCAGACGACAGTGC 60.446 63.158 0.00 0.00 0.00 4.40
183 184 0.109086 CTGCTACCCAGACGACAGTG 60.109 60.000 0.00 0.00 44.64 3.66
184 185 0.539901 ACTGCTACCCAGACGACAGT 60.540 55.000 0.00 0.00 44.64 3.55
185 186 0.603569 AACTGCTACCCAGACGACAG 59.396 55.000 0.00 0.00 44.64 3.51
186 187 1.000506 GAAACTGCTACCCAGACGACA 59.999 52.381 0.00 0.00 44.64 4.35
187 188 1.711206 GAAACTGCTACCCAGACGAC 58.289 55.000 0.00 0.00 44.64 4.34
188 189 0.242825 CGAAACTGCTACCCAGACGA 59.757 55.000 0.00 0.00 44.64 4.20
189 190 0.038526 ACGAAACTGCTACCCAGACG 60.039 55.000 0.00 0.00 44.64 4.18
190 191 2.230750 ACTACGAAACTGCTACCCAGAC 59.769 50.000 0.00 0.00 44.64 3.51
191 192 2.522185 ACTACGAAACTGCTACCCAGA 58.478 47.619 0.00 0.00 44.64 3.86
193 194 4.870123 TTTACTACGAAACTGCTACCCA 57.130 40.909 0.00 0.00 0.00 4.51
194 195 4.990426 TGTTTTACTACGAAACTGCTACCC 59.010 41.667 0.00 0.00 37.75 3.69
195 196 5.463061 TGTGTTTTACTACGAAACTGCTACC 59.537 40.000 0.00 0.00 37.75 3.18
196 197 6.350200 GTGTGTTTTACTACGAAACTGCTAC 58.650 40.000 0.00 0.00 37.75 3.58
197 198 5.173673 CGTGTGTTTTACTACGAAACTGCTA 59.826 40.000 0.00 0.00 37.75 3.49
198 199 4.026310 CGTGTGTTTTACTACGAAACTGCT 60.026 41.667 0.00 0.00 37.75 4.24
199 200 4.198584 CGTGTGTTTTACTACGAAACTGC 58.801 43.478 0.00 0.00 37.75 4.40
200 201 5.004630 TGACGTGTGTTTTACTACGAAACTG 59.995 40.000 0.00 0.00 37.75 3.16
201 202 5.004726 GTGACGTGTGTTTTACTACGAAACT 59.995 40.000 0.00 0.00 37.75 2.66
202 203 5.183209 GTGACGTGTGTTTTACTACGAAAC 58.817 41.667 0.00 0.00 37.30 2.78
203 204 4.861462 TGTGACGTGTGTTTTACTACGAAA 59.139 37.500 0.00 0.00 37.30 3.46
204 205 4.419280 TGTGACGTGTGTTTTACTACGAA 58.581 39.130 0.00 0.00 37.30 3.85
216 217 8.775220 TTTTAGTTCAAAATATGTGACGTGTG 57.225 30.769 0.00 0.00 31.05 3.82
217 218 9.959749 AATTTTAGTTCAAAATATGTGACGTGT 57.040 25.926 0.00 0.00 44.37 4.49
287 288 4.696877 CACATGCTCTAGTTTGTCCATCAA 59.303 41.667 0.00 0.00 0.00 2.57
290 291 4.292186 ACACATGCTCTAGTTTGTCCAT 57.708 40.909 0.00 0.00 0.00 3.41
389 392 2.093341 GGGACATAAGTTACAAGGCCGA 60.093 50.000 0.00 0.00 0.00 5.54
395 398 4.283978 TCGGTGAAGGGACATAAGTTACAA 59.716 41.667 0.00 0.00 0.00 2.41
514 2632 2.489802 GGGAAGGAGCTGGATTAATGGG 60.490 54.545 0.00 0.00 0.00 4.00
527 2645 2.434359 GTCCAACGCGGGAAGGAG 60.434 66.667 12.47 0.00 39.05 3.69
578 2697 6.353582 CGTTGACGACTTTACAGATTGTTTTC 59.646 38.462 0.00 0.00 43.02 2.29
587 2845 1.855978 TGCACGTTGACGACTTTACAG 59.144 47.619 10.87 0.00 43.02 2.74
588 2846 1.589320 GTGCACGTTGACGACTTTACA 59.411 47.619 10.87 0.00 43.02 2.41
595 2853 0.179121 ACAGAAGTGCACGTTGACGA 60.179 50.000 20.13 0.00 43.02 4.20
596 2854 0.229753 GACAGAAGTGCACGTTGACG 59.770 55.000 20.13 1.41 46.33 4.35
602 2860 3.928992 ACATAATCTGACAGAAGTGCACG 59.071 43.478 12.01 0.00 0.00 5.34
608 2866 6.878317 TGTCCCTAACATAATCTGACAGAAG 58.122 40.000 9.70 0.08 31.20 2.85
620 2878 4.686396 CGAGACCTCTCTGTCCCTAACATA 60.686 50.000 0.93 0.00 40.75 2.29
622 2880 2.618302 CGAGACCTCTCTGTCCCTAACA 60.618 54.545 0.93 0.00 40.75 2.41
633 2891 1.726533 CCTTACGGGCGAGACCTCTC 61.727 65.000 0.00 0.00 39.10 3.20
637 2895 0.313357 GATACCTTACGGGCGAGACC 59.687 60.000 0.00 0.00 39.10 3.85
638 2896 0.040603 CGATACCTTACGGGCGAGAC 60.041 60.000 0.00 0.00 39.10 3.36
646 2904 2.933906 ACATTTGCACCGATACCTTACG 59.066 45.455 0.00 0.00 0.00 3.18
647 2905 4.273005 CACATTTGCACCGATACCTTAC 57.727 45.455 0.00 0.00 0.00 2.34
661 2919 3.655276 AAGAAAGAGCCTGCACATTTG 57.345 42.857 0.00 0.00 0.00 2.32
662 2920 4.677673 AAAAGAAAGAGCCTGCACATTT 57.322 36.364 0.00 0.00 0.00 2.32
663 2921 4.343239 AGAAAAAGAAAGAGCCTGCACATT 59.657 37.500 0.00 0.00 0.00 2.71
664 2922 3.893813 AGAAAAAGAAAGAGCCTGCACAT 59.106 39.130 0.00 0.00 0.00 3.21
665 2923 3.067180 CAGAAAAAGAAAGAGCCTGCACA 59.933 43.478 0.00 0.00 0.00 4.57
687 2959 8.810652 TGGCTTTGATTAATTTATTTATCCGC 57.189 30.769 0.00 0.00 0.00 5.54
774 3894 1.478510 ACCATTCCTGCTGAGACGTAG 59.521 52.381 0.00 0.00 0.00 3.51
777 3897 1.338105 TGAACCATTCCTGCTGAGACG 60.338 52.381 0.00 0.00 0.00 4.18
784 3904 1.503542 CTGCGTGAACCATTCCTGC 59.496 57.895 0.00 0.00 0.00 4.85
803 3923 3.049912 GGGTCAACAAATTCTTTGCGTC 58.950 45.455 0.00 0.00 44.39 5.19
805 3925 3.052036 CTGGGTCAACAAATTCTTTGCG 58.948 45.455 0.00 0.00 44.39 4.85
838 3958 1.133790 ACATCTACCGACACGCCTTAC 59.866 52.381 0.00 0.00 0.00 2.34
839 3959 1.466856 ACATCTACCGACACGCCTTA 58.533 50.000 0.00 0.00 0.00 2.69
843 3963 3.043586 CAATCTACATCTACCGACACGC 58.956 50.000 0.00 0.00 0.00 5.34
849 3969 4.991056 CCAATGACCAATCTACATCTACCG 59.009 45.833 0.00 0.00 0.00 4.02
857 3977 2.356135 ACGCACCAATGACCAATCTAC 58.644 47.619 0.00 0.00 0.00 2.59
858 3978 2.779755 ACGCACCAATGACCAATCTA 57.220 45.000 0.00 0.00 0.00 1.98
859 3979 1.909700 AACGCACCAATGACCAATCT 58.090 45.000 0.00 0.00 0.00 2.40
860 3980 3.190535 ACTTAACGCACCAATGACCAATC 59.809 43.478 0.00 0.00 0.00 2.67
861 3981 3.153919 ACTTAACGCACCAATGACCAAT 58.846 40.909 0.00 0.00 0.00 3.16
873 3993 1.135527 CCCCAGACGATACTTAACGCA 59.864 52.381 0.00 0.00 0.00 5.24
888 4016 0.602905 GTCAACGAACCAGTCCCCAG 60.603 60.000 0.00 0.00 0.00 4.45
894 4022 2.006888 CAACACTGTCAACGAACCAGT 58.993 47.619 0.00 0.00 39.93 4.00
895 4023 1.268032 GCAACACTGTCAACGAACCAG 60.268 52.381 0.00 0.00 0.00 4.00
896 4024 0.730265 GCAACACTGTCAACGAACCA 59.270 50.000 0.00 0.00 0.00 3.67
897 4025 0.315869 CGCAACACTGTCAACGAACC 60.316 55.000 0.00 0.00 0.00 3.62
946 4074 5.928839 GGTGCCACAACAGATATATAGTCTG 59.071 44.000 13.57 13.57 46.60 3.51
958 4090 2.253758 CCTGACGGTGCCACAACAG 61.254 63.158 0.00 2.88 0.00 3.16
962 4094 2.203139 CAACCTGACGGTGCCACA 60.203 61.111 0.00 0.00 44.73 4.17
970 4108 1.342082 CCGTTAGCGACAACCTGACG 61.342 60.000 0.00 0.00 40.59 4.35
1107 4259 2.579787 GGGTGCGACGACGATGAG 60.580 66.667 12.29 0.00 42.66 2.90
1161 4325 3.593794 GCCTCGTCGATACCCGCT 61.594 66.667 0.00 0.00 38.37 5.52
1280 4447 4.678269 CGCACGTCGTGTCGTCCT 62.678 66.667 25.18 0.00 42.27 3.85
1437 4604 0.966179 AGGAATTTTTCACGGTGGCC 59.034 50.000 8.50 0.00 0.00 5.36
1438 4605 1.611491 TCAGGAATTTTTCACGGTGGC 59.389 47.619 8.50 0.00 0.00 5.01
1449 4616 3.815401 CTGTGACGAAGGTTCAGGAATTT 59.185 43.478 0.00 0.00 0.00 1.82
1462 4629 2.809174 CGCGGATGCTGTGACGAA 60.809 61.111 0.00 0.00 39.65 3.85
1473 4646 4.393155 TCTTGGCTGCACGCGGAT 62.393 61.111 12.47 0.00 40.44 4.18
1476 4649 2.816958 ATCTCTTGGCTGCACGCG 60.817 61.111 3.53 3.53 40.44 6.01
1633 4878 1.800586 TGCAATCTGACGAAAGAGCAC 59.199 47.619 0.00 0.00 0.00 4.40
1644 4889 1.159285 CCAAAGTCGCTGCAATCTGA 58.841 50.000 0.00 0.00 0.00 3.27
1708 4962 6.308566 TCATTTATAAAAATAGGACCGGGGG 58.691 40.000 6.32 0.00 33.45 5.40
1709 4963 7.826918 TTCATTTATAAAAATAGGACCGGGG 57.173 36.000 6.32 0.00 33.45 5.73
1710 4964 8.139350 GGTTTCATTTATAAAAATAGGACCGGG 58.861 37.037 6.32 0.00 33.45 5.73
1711 4965 8.688151 TGGTTTCATTTATAAAAATAGGACCGG 58.312 33.333 0.00 0.00 34.81 5.28
1712 4966 9.730420 CTGGTTTCATTTATAAAAATAGGACCG 57.270 33.333 1.21 1.11 34.81 4.79
1720 4974 9.757227 CACTGTTCCTGGTTTCATTTATAAAAA 57.243 29.630 1.21 0.00 0.00 1.94
1721 4975 8.919145 ACACTGTTCCTGGTTTCATTTATAAAA 58.081 29.630 1.21 0.00 0.00 1.52
1722 4976 8.472007 ACACTGTTCCTGGTTTCATTTATAAA 57.528 30.769 0.00 0.00 0.00 1.40
1723 4977 7.094975 CGACACTGTTCCTGGTTTCATTTATAA 60.095 37.037 0.00 0.00 0.00 0.98
1724 4978 6.370442 CGACACTGTTCCTGGTTTCATTTATA 59.630 38.462 0.00 0.00 0.00 0.98
1725 4979 5.181245 CGACACTGTTCCTGGTTTCATTTAT 59.819 40.000 0.00 0.00 0.00 1.40
1726 4980 4.513692 CGACACTGTTCCTGGTTTCATTTA 59.486 41.667 0.00 0.00 0.00 1.40
1727 4981 3.315191 CGACACTGTTCCTGGTTTCATTT 59.685 43.478 0.00 0.00 0.00 2.32
1728 4982 2.878406 CGACACTGTTCCTGGTTTCATT 59.122 45.455 0.00 0.00 0.00 2.57
1729 4983 2.104111 TCGACACTGTTCCTGGTTTCAT 59.896 45.455 0.00 0.00 0.00 2.57
1730 4984 1.483004 TCGACACTGTTCCTGGTTTCA 59.517 47.619 0.00 0.00 0.00 2.69
1731 4985 2.234300 TCGACACTGTTCCTGGTTTC 57.766 50.000 0.00 0.00 0.00 2.78
1732 4986 2.702592 TTCGACACTGTTCCTGGTTT 57.297 45.000 0.00 0.00 0.00 3.27
1733 4987 2.169769 TCTTTCGACACTGTTCCTGGTT 59.830 45.455 0.00 0.00 0.00 3.67
1734 4988 1.760613 TCTTTCGACACTGTTCCTGGT 59.239 47.619 0.00 0.00 0.00 4.00
1735 4989 2.526304 TCTTTCGACACTGTTCCTGG 57.474 50.000 0.00 0.00 0.00 4.45
1736 4990 3.194861 TGTTCTTTCGACACTGTTCCTG 58.805 45.455 0.00 0.00 0.00 3.86
1737 4991 3.536956 TGTTCTTTCGACACTGTTCCT 57.463 42.857 0.00 0.00 0.00 3.36
1738 4992 4.609691 TTTGTTCTTTCGACACTGTTCC 57.390 40.909 0.00 0.00 0.00 3.62
1739 4993 5.569413 ACATTTGTTCTTTCGACACTGTTC 58.431 37.500 0.00 0.00 0.00 3.18
1740 4994 5.560966 ACATTTGTTCTTTCGACACTGTT 57.439 34.783 0.00 0.00 0.00 3.16
1741 4995 5.560966 AACATTTGTTCTTTCGACACTGT 57.439 34.783 0.00 0.00 31.64 3.55
1742 4996 5.455525 GGAAACATTTGTTCTTTCGACACTG 59.544 40.000 0.00 0.00 37.25 3.66
1743 4997 5.449999 GGGAAACATTTGTTCTTTCGACACT 60.450 40.000 0.00 0.00 37.25 3.55
1744 4998 4.738252 GGGAAACATTTGTTCTTTCGACAC 59.262 41.667 0.00 0.00 37.25 3.67
1745 4999 4.202070 GGGGAAACATTTGTTCTTTCGACA 60.202 41.667 0.00 0.00 37.25 4.35
1746 5000 4.295870 GGGGAAACATTTGTTCTTTCGAC 58.704 43.478 0.00 0.00 37.25 4.20
1747 5001 3.319689 GGGGGAAACATTTGTTCTTTCGA 59.680 43.478 0.00 0.00 37.25 3.71
1748 5002 3.649073 GGGGGAAACATTTGTTCTTTCG 58.351 45.455 0.00 0.00 37.25 3.46
1766 5020 3.611025 TTATTATTTGGCCTCTGGGGG 57.389 47.619 3.32 0.00 35.12 5.40
1767 5021 5.069119 GTCTTTTATTATTTGGCCTCTGGGG 59.931 44.000 3.32 0.00 38.36 4.96
1768 5022 5.221048 CGTCTTTTATTATTTGGCCTCTGGG 60.221 44.000 3.32 0.00 0.00 4.45
1769 5023 5.357032 ACGTCTTTTATTATTTGGCCTCTGG 59.643 40.000 3.32 0.00 0.00 3.86
1770 5024 6.316390 AGACGTCTTTTATTATTTGGCCTCTG 59.684 38.462 13.58 0.00 0.00 3.35
1771 5025 6.415573 AGACGTCTTTTATTATTTGGCCTCT 58.584 36.000 13.58 0.00 0.00 3.69
1772 5026 6.679327 AGACGTCTTTTATTATTTGGCCTC 57.321 37.500 13.58 0.00 0.00 4.70
1773 5027 7.280205 CAGTAGACGTCTTTTATTATTTGGCCT 59.720 37.037 25.44 0.00 0.00 5.19
1774 5028 7.065443 ACAGTAGACGTCTTTTATTATTTGGCC 59.935 37.037 25.44 0.00 0.00 5.36
1775 5029 7.971455 ACAGTAGACGTCTTTTATTATTTGGC 58.029 34.615 25.44 0.00 0.00 4.52
1785 5039 9.494271 TCCGTATATATACAGTAGACGTCTTTT 57.506 33.333 25.44 9.61 35.62 2.27
1786 5040 8.930760 GTCCGTATATATACAGTAGACGTCTTT 58.069 37.037 25.44 10.00 35.62 2.52
1787 5041 8.310382 AGTCCGTATATATACAGTAGACGTCTT 58.690 37.037 25.44 8.18 35.62 3.01
1788 5042 7.835822 AGTCCGTATATATACAGTAGACGTCT 58.164 38.462 23.66 23.66 35.62 4.18
1789 5043 7.973388 AGAGTCCGTATATATACAGTAGACGTC 59.027 40.741 20.24 7.70 35.62 4.34
1790 5044 7.835822 AGAGTCCGTATATATACAGTAGACGT 58.164 38.462 20.24 11.44 35.62 4.34
1791 5045 8.190122 AGAGAGTCCGTATATATACAGTAGACG 58.810 40.741 20.24 8.86 36.75 4.18
1792 5046 9.874205 AAGAGAGTCCGTATATATACAGTAGAC 57.126 37.037 20.24 18.26 32.87 2.59
1816 5072 1.352156 GCGCCGGTACAGAGTGAAAG 61.352 60.000 1.90 0.00 0.00 2.62
1902 5158 2.812011 GCGCCCGTATGGAGATATTTTT 59.188 45.455 1.27 0.00 35.62 1.94
1903 5159 2.224426 TGCGCCCGTATGGAGATATTTT 60.224 45.455 4.18 0.00 35.62 1.82
1904 5160 1.346395 TGCGCCCGTATGGAGATATTT 59.654 47.619 4.18 0.00 35.62 1.40
1905 5161 0.973632 TGCGCCCGTATGGAGATATT 59.026 50.000 4.18 0.00 35.62 1.28
1990 5246 2.761208 ACACACACCTACTAGGCTCATC 59.239 50.000 1.55 0.00 39.63 2.92
1994 5250 3.165087 TGTACACACACCTACTAGGCT 57.835 47.619 1.55 0.00 39.63 4.58
1995 5251 3.582780 GTTGTACACACACCTACTAGGC 58.417 50.000 0.00 0.00 39.63 3.93
2004 7811 4.817464 TGGTTATCTTGGTTGTACACACAC 59.183 41.667 0.00 0.00 33.30 3.82
2099 7964 7.717436 AGAAAAACAGAAGAAAACCAACCAAAA 59.283 29.630 0.00 0.00 0.00 2.44
2251 8119 9.855021 CTCACGAATTAGGAAAAATTATGGTTT 57.145 29.630 0.00 0.00 0.00 3.27
2252 8120 9.020731 ACTCACGAATTAGGAAAAATTATGGTT 57.979 29.630 0.00 0.00 0.00 3.67
2253 8121 8.575649 ACTCACGAATTAGGAAAAATTATGGT 57.424 30.769 0.00 0.00 0.00 3.55
2254 8122 9.855021 AAACTCACGAATTAGGAAAAATTATGG 57.145 29.630 0.00 0.00 0.00 2.74
2362 8230 9.349713 AGTTGACATAGTTCATAGGTTTGAAAA 57.650 29.630 0.00 0.00 37.36 2.29
2363 8231 8.918202 AGTTGACATAGTTCATAGGTTTGAAA 57.082 30.769 0.00 0.00 37.36 2.69
2364 8232 7.606456 GGAGTTGACATAGTTCATAGGTTTGAA 59.394 37.037 0.00 0.00 33.32 2.69
2365 8233 7.103641 GGAGTTGACATAGTTCATAGGTTTGA 58.896 38.462 0.00 0.00 0.00 2.69
2366 8234 6.878923 TGGAGTTGACATAGTTCATAGGTTTG 59.121 38.462 0.00 0.00 0.00 2.93
2367 8235 7.016153 TGGAGTTGACATAGTTCATAGGTTT 57.984 36.000 0.00 0.00 0.00 3.27
2368 8236 6.620877 TGGAGTTGACATAGTTCATAGGTT 57.379 37.500 0.00 0.00 0.00 3.50
2369 8237 6.384015 TCATGGAGTTGACATAGTTCATAGGT 59.616 38.462 0.00 0.00 0.00 3.08
2370 8238 6.820335 TCATGGAGTTGACATAGTTCATAGG 58.180 40.000 0.00 0.00 0.00 2.57
2371 8239 8.899427 AATCATGGAGTTGACATAGTTCATAG 57.101 34.615 0.00 0.00 0.00 2.23
2372 8240 9.685276 AAAATCATGGAGTTGACATAGTTCATA 57.315 29.630 0.00 0.00 0.00 2.15
2373 8241 8.585471 AAAATCATGGAGTTGACATAGTTCAT 57.415 30.769 0.00 0.00 0.00 2.57
2374 8242 8.408043 AAAAATCATGGAGTTGACATAGTTCA 57.592 30.769 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.