Multiple sequence alignment - TraesCS5A01G026600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G026600 chr5A 100.000 2455 0 0 1 2455 21684757 21687211 0.000000e+00 4534.0
1 TraesCS5A01G026600 chr5A 71.600 500 122 16 11 501 531490414 531489926 4.290000e-23 119.0
2 TraesCS5A01G026600 chr5A 91.489 47 4 0 1 47 660401696 660401650 5.670000e-07 65.8
3 TraesCS5A01G026600 chr5A 84.483 58 7 2 163 219 122125487 122125431 3.410000e-04 56.5
4 TraesCS5A01G026600 chr6A 95.917 1249 34 7 548 1784 12613715 12614958 0.000000e+00 2008.0
5 TraesCS5A01G026600 chr6A 96.266 482 16 2 1975 2455 12614943 12615423 0.000000e+00 789.0
6 TraesCS5A01G026600 chr6A 82.353 204 23 8 1784 1977 35986927 35987127 5.430000e-37 165.0
7 TraesCS5A01G026600 chr3B 94.743 913 39 4 548 1456 786071954 786072861 0.000000e+00 1411.0
8 TraesCS5A01G026600 chr3B 92.131 610 44 2 545 1154 725455013 725455618 0.000000e+00 857.0
9 TraesCS5A01G026600 chr3B 91.749 509 37 3 543 1051 825573400 825573903 0.000000e+00 702.0
10 TraesCS5A01G026600 chr3B 94.721 341 18 0 1088 1428 825573912 825574252 4.650000e-147 531.0
11 TraesCS5A01G026600 chr3B 91.066 347 29 1 1438 1784 825574302 825574646 3.700000e-128 468.0
12 TraesCS5A01G026600 chr3B 89.474 380 24 6 2090 2455 825574713 825575090 1.330000e-127 466.0
13 TraesCS5A01G026600 chr3B 94.937 237 12 0 1975 2211 786073111 786073347 2.980000e-99 372.0
14 TraesCS5A01G026600 chr3B 92.395 263 10 4 1524 1779 786072862 786073121 1.390000e-97 366.0
15 TraesCS5A01G026600 chr3B 88.571 70 4 3 1975 2040 825574631 825574700 5.630000e-12 82.4
16 TraesCS5A01G026600 chr3B 73.636 220 52 6 88 304 578387598 578387814 2.020000e-11 80.5
17 TraesCS5A01G026600 chr3B 97.143 35 0 1 275 309 104716975 104716942 9.480000e-05 58.4
18 TraesCS5A01G026600 chr6B 95.292 616 26 1 819 1434 280090743 280090131 0.000000e+00 974.0
19 TraesCS5A01G026600 chr6B 92.246 374 17 5 2090 2455 280089727 280089358 1.010000e-143 520.0
20 TraesCS5A01G026600 chr6B 90.950 221 18 2 546 766 280091090 280090872 1.850000e-76 296.0
21 TraesCS5A01G026600 chr6B 93.750 192 11 1 1462 1652 280090072 280089881 1.110000e-73 287.0
22 TraesCS5A01G026600 chr6B 83.920 199 27 3 1784 1977 66828325 66828523 4.170000e-43 185.0
23 TraesCS5A01G026600 chr6B 82.632 190 26 7 1784 1967 66916806 66916994 7.030000e-36 161.0
24 TraesCS5A01G026600 chr6B 98.413 63 1 0 1978 2040 280089802 280089740 7.180000e-21 111.0
25 TraesCS5A01G026600 chr6B 74.713 174 40 4 131 302 17044074 17043903 9.420000e-10 75.0
26 TraesCS5A01G026600 chr2D 96.718 457 15 0 1 457 58741274 58740818 0.000000e+00 761.0
27 TraesCS5A01G026600 chr2D 75.949 158 35 3 137 293 648266717 648266562 7.280000e-11 78.7
28 TraesCS5A01G026600 chr4B 76.867 549 117 9 1 544 281563656 281563113 3.970000e-78 302.0
29 TraesCS5A01G026600 chr4B 74.123 228 35 15 1443 1648 515176649 515176874 3.390000e-09 73.1
30 TraesCS5A01G026600 chr7D 85.992 257 35 1 13 269 44581066 44580811 8.650000e-70 274.0
31 TraesCS5A01G026600 chr7D 92.228 193 11 4 1786 1976 447908981 447909171 1.120000e-68 270.0
32 TraesCS5A01G026600 chr6D 78.930 299 60 3 1 297 11900798 11901095 1.490000e-47 200.0
33 TraesCS5A01G026600 chr1B 81.773 203 27 6 1784 1977 539874905 539874704 7.030000e-36 161.0
34 TraesCS5A01G026600 chr3A 89.796 49 3 2 547 594 102878112 102878159 7.330000e-06 62.1
35 TraesCS5A01G026600 chr2A 89.796 49 3 2 547 594 349629380 349629427 7.330000e-06 62.1
36 TraesCS5A01G026600 chr7A 92.500 40 3 0 163 202 223757354 223757315 9.480000e-05 58.4
37 TraesCS5A01G026600 chr5B 90.909 44 3 1 266 309 686744358 686744400 9.480000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G026600 chr5A 21684757 21687211 2454 False 4534.000000 4534 100.0000 1 2455 1 chr5A.!!$F1 2454
1 TraesCS5A01G026600 chr6A 12613715 12615423 1708 False 1398.500000 2008 96.0915 548 2455 2 chr6A.!!$F2 1907
2 TraesCS5A01G026600 chr3B 725455013 725455618 605 False 857.000000 857 92.1310 545 1154 1 chr3B.!!$F2 609
3 TraesCS5A01G026600 chr3B 786071954 786073347 1393 False 716.333333 1411 94.0250 548 2211 3 chr3B.!!$F3 1663
4 TraesCS5A01G026600 chr3B 825573400 825575090 1690 False 449.880000 702 91.1162 543 2455 5 chr3B.!!$F4 1912
5 TraesCS5A01G026600 chr6B 280089358 280091090 1732 True 437.600000 974 94.1302 546 2455 5 chr6B.!!$R2 1909
6 TraesCS5A01G026600 chr4B 281563113 281563656 543 True 302.000000 302 76.8670 1 544 1 chr4B.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 496 0.035458 CCTTTAGCGGCCCTATCTGG 59.965 60.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 2090 0.034059 CATCCTCATAGCCACGGGTC 59.966 60.0 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.623932 TTGCTTCAAGTATGTCCAGTCT 57.376 40.909 0.00 0.00 0.00 3.24
62 63 3.021695 TCAAGTATGTCCAGTCTACCCG 58.978 50.000 0.00 0.00 0.00 5.28
63 64 2.068834 AGTATGTCCAGTCTACCCGG 57.931 55.000 0.00 0.00 0.00 5.73
66 67 0.040646 ATGTCCAGTCTACCCGGTCA 59.959 55.000 0.00 0.00 0.00 4.02
69 70 2.291735 TGTCCAGTCTACCCGGTCATAA 60.292 50.000 0.00 0.00 0.00 1.90
72 73 2.032620 CAGTCTACCCGGTCATAAGCT 58.967 52.381 0.00 0.00 0.00 3.74
75 76 4.098960 CAGTCTACCCGGTCATAAGCTTTA 59.901 45.833 3.20 0.00 0.00 1.85
78 79 5.010820 GTCTACCCGGTCATAAGCTTTAGAT 59.989 44.000 3.20 0.00 0.00 1.98
81 82 4.283722 ACCCGGTCATAAGCTTTAGATAGG 59.716 45.833 3.20 10.19 0.00 2.57
84 85 5.010719 CCGGTCATAAGCTTTAGATAGGTCA 59.989 44.000 3.20 0.00 0.00 4.02
94 95 8.794335 AGCTTTAGATAGGTCAAGTTTAAAGG 57.206 34.615 0.00 0.00 30.98 3.11
95 96 7.337184 AGCTTTAGATAGGTCAAGTTTAAAGGC 59.663 37.037 0.00 0.00 30.98 4.35
106 107 7.412563 GGTCAAGTTTAAAGGCACAAAAACTTC 60.413 37.037 13.18 6.58 45.54 3.01
110 111 7.258441 AGTTTAAAGGCACAAAAACTTCTCTC 58.742 34.615 0.00 0.00 38.65 3.20
114 115 3.117888 AGGCACAAAAACTTCTCTCTGGA 60.118 43.478 0.00 0.00 0.00 3.86
138 139 4.018506 TCCTTTTCCTGCTGAATATGGTGA 60.019 41.667 0.00 0.00 31.67 4.02
141 142 6.547141 CCTTTTCCTGCTGAATATGGTGAATA 59.453 38.462 0.00 0.00 31.67 1.75
147 148 5.049828 TGCTGAATATGGTGAATACACTCG 58.950 41.667 0.00 0.00 45.32 4.18
150 151 6.074088 GCTGAATATGGTGAATACACTCGAAG 60.074 42.308 0.00 0.00 45.32 3.79
151 152 6.280643 TGAATATGGTGAATACACTCGAAGG 58.719 40.000 0.00 0.00 45.32 3.46
165 166 3.009723 CTCGAAGGCCAAAAGAGCATTA 58.990 45.455 5.01 0.00 33.80 1.90
171 172 5.116084 AGGCCAAAAGAGCATTATCAGTA 57.884 39.130 5.01 0.00 0.00 2.74
172 173 5.509498 AGGCCAAAAGAGCATTATCAGTAA 58.491 37.500 5.01 0.00 0.00 2.24
177 178 8.786898 GCCAAAAGAGCATTATCAGTAATCATA 58.213 33.333 0.00 0.00 0.00 2.15
183 184 7.978414 AGAGCATTATCAGTAATCATATGTCCG 59.022 37.037 1.90 0.00 0.00 4.79
186 187 3.678056 TCAGTAATCATATGTCCGGGC 57.322 47.619 0.00 0.00 0.00 6.13
207 208 2.924105 AAAGGCGCTTTGAGCTGGC 61.924 57.895 5.18 9.15 39.60 4.85
224 225 3.565482 GCTGGCGAGATAATTTCATCCAA 59.435 43.478 0.00 0.00 0.00 3.53
225 226 4.036734 GCTGGCGAGATAATTTCATCCAAA 59.963 41.667 0.00 0.00 0.00 3.28
228 229 7.111247 TGGCGAGATAATTTCATCCAAAATT 57.889 32.000 0.00 0.00 40.82 1.82
249 250 1.228124 CCTGAGGCGGTTCACCAAA 60.228 57.895 0.00 0.00 35.14 3.28
252 253 0.179004 TGAGGCGGTTCACCAAACAT 60.179 50.000 0.00 0.00 39.81 2.71
264 265 3.055530 TCACCAAACATTTTGCAACCACT 60.056 39.130 0.00 0.00 0.00 4.00
267 268 4.155644 ACCAAACATTTTGCAACCACTTTG 59.844 37.500 0.00 5.35 38.37 2.77
270 271 6.128172 CCAAACATTTTGCAACCACTTTGTAA 60.128 34.615 0.00 0.00 37.96 2.41
273 274 8.723942 AACATTTTGCAACCACTTTGTAAATA 57.276 26.923 0.00 0.00 45.65 1.40
279 280 7.706281 TGCAACCACTTTGTAAATAACATTG 57.294 32.000 0.00 0.00 38.10 2.82
285 286 7.230510 ACCACTTTGTAAATAACATTGCAGAGA 59.769 33.333 3.43 0.00 38.10 3.10
287 288 8.292448 CACTTTGTAAATAACATTGCAGAGACT 58.708 33.333 3.43 0.00 38.10 3.24
288 289 9.502091 ACTTTGTAAATAACATTGCAGAGACTA 57.498 29.630 3.43 0.00 38.10 2.59
294 295 7.736447 AATAACATTGCAGAGACTAATAGGC 57.264 36.000 0.00 0.00 0.00 3.93
295 296 4.078639 ACATTGCAGAGACTAATAGGCC 57.921 45.455 0.00 0.00 0.00 5.19
296 297 3.713764 ACATTGCAGAGACTAATAGGCCT 59.286 43.478 11.78 11.78 0.00 5.19
297 298 3.827008 TTGCAGAGACTAATAGGCCTG 57.173 47.619 17.99 0.00 0.00 4.85
298 299 3.032265 TGCAGAGACTAATAGGCCTGA 57.968 47.619 17.99 0.00 0.00 3.86
299 300 3.374764 TGCAGAGACTAATAGGCCTGAA 58.625 45.455 17.99 0.00 0.00 3.02
300 301 3.774766 TGCAGAGACTAATAGGCCTGAAA 59.225 43.478 17.99 0.00 0.00 2.69
301 302 4.410228 TGCAGAGACTAATAGGCCTGAAAT 59.590 41.667 17.99 0.00 0.00 2.17
302 303 4.994217 GCAGAGACTAATAGGCCTGAAATC 59.006 45.833 17.99 6.63 0.00 2.17
303 304 5.453903 GCAGAGACTAATAGGCCTGAAATCA 60.454 44.000 17.99 0.00 0.00 2.57
304 305 6.222389 CAGAGACTAATAGGCCTGAAATCAG 58.778 44.000 17.99 0.00 43.40 2.90
305 306 5.902431 AGAGACTAATAGGCCTGAAATCAGT 59.098 40.000 17.99 1.72 42.27 3.41
306 307 6.041523 AGAGACTAATAGGCCTGAAATCAGTC 59.958 42.308 17.99 12.35 42.27 3.51
307 308 5.663106 AGACTAATAGGCCTGAAATCAGTCA 59.337 40.000 17.99 0.00 42.27 3.41
308 309 5.923204 ACTAATAGGCCTGAAATCAGTCAG 58.077 41.667 17.99 0.41 43.98 3.51
309 310 4.851639 AATAGGCCTGAAATCAGTCAGT 57.148 40.909 17.99 0.00 43.02 3.41
310 311 4.851639 ATAGGCCTGAAATCAGTCAGTT 57.148 40.909 17.99 0.00 43.02 3.16
311 312 3.515602 AGGCCTGAAATCAGTCAGTTT 57.484 42.857 3.11 0.00 43.02 2.66
312 313 3.837355 AGGCCTGAAATCAGTCAGTTTT 58.163 40.909 3.11 0.00 43.02 2.43
313 314 4.985538 AGGCCTGAAATCAGTCAGTTTTA 58.014 39.130 3.11 0.00 43.02 1.52
314 315 5.574188 AGGCCTGAAATCAGTCAGTTTTAT 58.426 37.500 3.11 0.00 43.02 1.40
315 316 5.649831 AGGCCTGAAATCAGTCAGTTTTATC 59.350 40.000 3.11 0.00 43.02 1.75
316 317 5.447818 GGCCTGAAATCAGTCAGTTTTATCG 60.448 44.000 9.43 0.00 43.02 2.92
317 318 5.447818 GCCTGAAATCAGTCAGTTTTATCGG 60.448 44.000 9.43 0.00 43.02 4.18
318 319 5.065218 CCTGAAATCAGTCAGTTTTATCGGG 59.935 44.000 9.43 0.00 43.02 5.14
319 320 5.556915 TGAAATCAGTCAGTTTTATCGGGT 58.443 37.500 0.00 0.00 0.00 5.28
320 321 6.001460 TGAAATCAGTCAGTTTTATCGGGTT 58.999 36.000 0.00 0.00 0.00 4.11
321 322 5.880054 AATCAGTCAGTTTTATCGGGTTG 57.120 39.130 0.00 0.00 0.00 3.77
322 323 4.345859 TCAGTCAGTTTTATCGGGTTGT 57.654 40.909 0.00 0.00 0.00 3.32
323 324 4.312443 TCAGTCAGTTTTATCGGGTTGTC 58.688 43.478 0.00 0.00 0.00 3.18
324 325 4.039973 TCAGTCAGTTTTATCGGGTTGTCT 59.960 41.667 0.00 0.00 0.00 3.41
325 326 5.244402 TCAGTCAGTTTTATCGGGTTGTCTA 59.756 40.000 0.00 0.00 0.00 2.59
326 327 5.347907 CAGTCAGTTTTATCGGGTTGTCTAC 59.652 44.000 0.00 0.00 0.00 2.59
327 328 5.245526 AGTCAGTTTTATCGGGTTGTCTACT 59.754 40.000 0.00 0.00 0.00 2.57
328 329 5.930569 GTCAGTTTTATCGGGTTGTCTACTT 59.069 40.000 0.00 0.00 0.00 2.24
329 330 6.426025 GTCAGTTTTATCGGGTTGTCTACTTT 59.574 38.462 0.00 0.00 0.00 2.66
330 331 6.425721 TCAGTTTTATCGGGTTGTCTACTTTG 59.574 38.462 0.00 0.00 0.00 2.77
331 332 5.704053 AGTTTTATCGGGTTGTCTACTTTGG 59.296 40.000 0.00 0.00 0.00 3.28
332 333 2.781681 ATCGGGTTGTCTACTTTGGG 57.218 50.000 0.00 0.00 0.00 4.12
333 334 0.688487 TCGGGTTGTCTACTTTGGGG 59.312 55.000 0.00 0.00 0.00 4.96
334 335 0.688487 CGGGTTGTCTACTTTGGGGA 59.312 55.000 0.00 0.00 0.00 4.81
335 336 1.280998 CGGGTTGTCTACTTTGGGGAT 59.719 52.381 0.00 0.00 0.00 3.85
336 337 2.723273 GGGTTGTCTACTTTGGGGATG 58.277 52.381 0.00 0.00 0.00 3.51
337 338 2.307686 GGGTTGTCTACTTTGGGGATGA 59.692 50.000 0.00 0.00 0.00 2.92
338 339 3.610911 GGTTGTCTACTTTGGGGATGAG 58.389 50.000 0.00 0.00 0.00 2.90
339 340 3.263425 GGTTGTCTACTTTGGGGATGAGA 59.737 47.826 0.00 0.00 0.00 3.27
340 341 4.263331 GGTTGTCTACTTTGGGGATGAGAA 60.263 45.833 0.00 0.00 0.00 2.87
341 342 4.553330 TGTCTACTTTGGGGATGAGAAC 57.447 45.455 0.00 0.00 0.00 3.01
342 343 3.907474 TGTCTACTTTGGGGATGAGAACA 59.093 43.478 0.00 0.00 0.00 3.18
343 344 4.349636 TGTCTACTTTGGGGATGAGAACAA 59.650 41.667 0.00 0.00 0.00 2.83
344 345 5.014123 TGTCTACTTTGGGGATGAGAACAAT 59.986 40.000 0.00 0.00 0.00 2.71
345 346 5.946377 GTCTACTTTGGGGATGAGAACAATT 59.054 40.000 0.00 0.00 0.00 2.32
346 347 5.945784 TCTACTTTGGGGATGAGAACAATTG 59.054 40.000 3.24 3.24 0.00 2.32
347 348 4.482990 ACTTTGGGGATGAGAACAATTGT 58.517 39.130 4.92 4.92 0.00 2.71
348 349 4.524328 ACTTTGGGGATGAGAACAATTGTC 59.476 41.667 12.39 5.78 0.00 3.18
349 350 2.710377 TGGGGATGAGAACAATTGTCG 58.290 47.619 12.39 0.00 0.00 4.35
350 351 2.039746 TGGGGATGAGAACAATTGTCGT 59.960 45.455 12.39 1.56 0.00 4.34
351 352 3.262151 TGGGGATGAGAACAATTGTCGTA 59.738 43.478 12.39 0.00 0.00 3.43
352 353 4.080582 TGGGGATGAGAACAATTGTCGTAT 60.081 41.667 12.39 4.55 0.00 3.06
353 354 4.881850 GGGGATGAGAACAATTGTCGTATT 59.118 41.667 12.39 0.00 0.00 1.89
354 355 6.053005 GGGGATGAGAACAATTGTCGTATTA 58.947 40.000 12.39 0.00 0.00 0.98
355 356 6.710744 GGGGATGAGAACAATTGTCGTATTAT 59.289 38.462 12.39 0.00 0.00 1.28
356 357 7.228706 GGGGATGAGAACAATTGTCGTATTATT 59.771 37.037 12.39 0.00 0.00 1.40
357 358 9.268268 GGGATGAGAACAATTGTCGTATTATTA 57.732 33.333 12.39 0.00 0.00 0.98
362 363 9.698617 GAGAACAATTGTCGTATTATTAACACC 57.301 33.333 12.39 0.00 0.00 4.16
363 364 8.671028 AGAACAATTGTCGTATTATTAACACCC 58.329 33.333 12.39 0.00 0.00 4.61
364 365 8.570068 AACAATTGTCGTATTATTAACACCCT 57.430 30.769 12.39 0.00 0.00 4.34
365 366 8.205131 ACAATTGTCGTATTATTAACACCCTC 57.795 34.615 4.92 0.00 0.00 4.30
366 367 8.044908 ACAATTGTCGTATTATTAACACCCTCT 58.955 33.333 4.92 0.00 0.00 3.69
367 368 8.335356 CAATTGTCGTATTATTAACACCCTCTG 58.665 37.037 0.00 0.00 0.00 3.35
368 369 5.909477 TGTCGTATTATTAACACCCTCTGG 58.091 41.667 0.00 0.00 37.80 3.86
369 370 4.748600 GTCGTATTATTAACACCCTCTGGC 59.251 45.833 0.00 0.00 33.59 4.85
370 371 4.406326 TCGTATTATTAACACCCTCTGGCA 59.594 41.667 0.00 0.00 33.59 4.92
371 372 5.071250 TCGTATTATTAACACCCTCTGGCAT 59.929 40.000 0.00 0.00 33.59 4.40
372 373 5.179368 CGTATTATTAACACCCTCTGGCATG 59.821 44.000 0.00 0.00 33.59 4.06
373 374 4.853468 TTATTAACACCCTCTGGCATGA 57.147 40.909 0.00 0.00 33.59 3.07
374 375 2.489938 TTAACACCCTCTGGCATGAC 57.510 50.000 0.00 0.00 33.59 3.06
375 376 1.656587 TAACACCCTCTGGCATGACT 58.343 50.000 0.00 0.00 33.59 3.41
376 377 0.326264 AACACCCTCTGGCATGACTC 59.674 55.000 0.00 0.00 33.59 3.36
377 378 1.222936 CACCCTCTGGCATGACTCC 59.777 63.158 0.00 0.00 33.59 3.85
378 379 1.997874 ACCCTCTGGCATGACTCCC 60.998 63.158 0.00 0.00 33.59 4.30
379 380 2.503061 CCTCTGGCATGACTCCCG 59.497 66.667 0.00 0.00 0.00 5.14
380 381 2.362369 CCTCTGGCATGACTCCCGT 61.362 63.158 0.00 0.00 0.00 5.28
381 382 1.153489 CTCTGGCATGACTCCCGTG 60.153 63.158 0.00 0.00 34.90 4.94
385 386 2.434185 GCATGACTCCCGTGCGAA 60.434 61.111 0.00 0.00 46.51 4.70
386 387 2.032634 GCATGACTCCCGTGCGAAA 61.033 57.895 0.00 0.00 46.51 3.46
387 388 1.970917 GCATGACTCCCGTGCGAAAG 61.971 60.000 0.00 0.00 46.51 2.62
388 389 0.389817 CATGACTCCCGTGCGAAAGA 60.390 55.000 0.00 0.00 0.00 2.52
389 390 0.320374 ATGACTCCCGTGCGAAAGAA 59.680 50.000 0.00 0.00 0.00 2.52
390 391 0.320374 TGACTCCCGTGCGAAAGAAT 59.680 50.000 0.00 0.00 0.00 2.40
391 392 1.270625 TGACTCCCGTGCGAAAGAATT 60.271 47.619 0.00 0.00 0.00 2.17
392 393 1.393883 GACTCCCGTGCGAAAGAATTC 59.606 52.381 0.00 0.00 0.00 2.17
393 394 0.727398 CTCCCGTGCGAAAGAATTCC 59.273 55.000 0.65 0.00 31.52 3.01
394 395 0.323629 TCCCGTGCGAAAGAATTCCT 59.676 50.000 0.65 0.00 31.52 3.36
395 396 1.165270 CCCGTGCGAAAGAATTCCTT 58.835 50.000 0.65 0.00 36.47 3.36
396 397 1.130561 CCCGTGCGAAAGAATTCCTTC 59.869 52.381 6.71 6.71 33.02 3.46
397 398 1.804151 CCGTGCGAAAGAATTCCTTCA 59.196 47.619 15.38 0.00 33.02 3.02
398 399 2.412847 CCGTGCGAAAGAATTCCTTCAC 60.413 50.000 15.38 7.55 33.02 3.18
399 400 2.412847 CGTGCGAAAGAATTCCTTCACC 60.413 50.000 15.38 7.33 33.02 4.02
400 401 2.095212 GTGCGAAAGAATTCCTTCACCC 60.095 50.000 15.38 5.30 33.02 4.61
401 402 1.472878 GCGAAAGAATTCCTTCACCCC 59.527 52.381 15.38 0.00 33.02 4.95
402 403 2.880167 GCGAAAGAATTCCTTCACCCCT 60.880 50.000 15.38 0.00 33.02 4.79
403 404 2.749621 CGAAAGAATTCCTTCACCCCTG 59.250 50.000 15.38 0.00 33.02 4.45
404 405 3.767711 GAAAGAATTCCTTCACCCCTGT 58.232 45.455 11.22 0.00 33.02 4.00
405 406 4.564821 CGAAAGAATTCCTTCACCCCTGTA 60.565 45.833 15.38 0.00 33.02 2.74
406 407 4.576330 AAGAATTCCTTCACCCCTGTAG 57.424 45.455 0.65 0.00 33.56 2.74
407 408 3.532102 AGAATTCCTTCACCCCTGTAGT 58.468 45.455 0.65 0.00 33.56 2.73
408 409 4.695606 AGAATTCCTTCACCCCTGTAGTA 58.304 43.478 0.65 0.00 33.56 1.82
409 410 5.098663 AGAATTCCTTCACCCCTGTAGTAA 58.901 41.667 0.65 0.00 33.56 2.24
410 411 4.838904 ATTCCTTCACCCCTGTAGTAAC 57.161 45.455 0.00 0.00 0.00 2.50
411 412 3.263369 TCCTTCACCCCTGTAGTAACA 57.737 47.619 0.00 0.00 0.00 2.41
412 413 3.798515 TCCTTCACCCCTGTAGTAACAT 58.201 45.455 0.00 0.00 34.37 2.71
413 414 4.172807 TCCTTCACCCCTGTAGTAACATT 58.827 43.478 0.00 0.00 34.37 2.71
414 415 4.600111 TCCTTCACCCCTGTAGTAACATTT 59.400 41.667 0.00 0.00 34.37 2.32
415 416 5.786457 TCCTTCACCCCTGTAGTAACATTTA 59.214 40.000 0.00 0.00 34.37 1.40
416 417 5.878669 CCTTCACCCCTGTAGTAACATTTAC 59.121 44.000 0.00 0.00 34.37 2.01
417 418 6.296259 CCTTCACCCCTGTAGTAACATTTACT 60.296 42.308 4.13 4.13 34.37 2.24
418 419 6.691255 TCACCCCTGTAGTAACATTTACTT 57.309 37.500 4.00 0.00 34.37 2.24
419 420 7.081857 TCACCCCTGTAGTAACATTTACTTT 57.918 36.000 4.00 0.00 34.37 2.66
420 421 7.163441 TCACCCCTGTAGTAACATTTACTTTC 58.837 38.462 4.00 0.55 34.37 2.62
421 422 6.938030 CACCCCTGTAGTAACATTTACTTTCA 59.062 38.462 4.00 4.41 34.37 2.69
422 423 7.119262 CACCCCTGTAGTAACATTTACTTTCAG 59.881 40.741 15.96 15.96 34.37 3.02
423 424 7.166167 CCCCTGTAGTAACATTTACTTTCAGT 58.834 38.462 18.60 0.00 34.37 3.41
424 425 8.316214 CCCCTGTAGTAACATTTACTTTCAGTA 58.684 37.037 18.60 0.00 34.37 2.74
425 426 9.148104 CCCTGTAGTAACATTTACTTTCAGTAC 57.852 37.037 18.60 7.97 34.37 2.73
426 427 9.701098 CCTGTAGTAACATTTACTTTCAGTACA 57.299 33.333 18.60 10.70 34.37 2.90
430 431 8.788325 AGTAACATTTACTTTCAGTACATCCC 57.212 34.615 0.00 0.00 28.93 3.85
431 432 8.380099 AGTAACATTTACTTTCAGTACATCCCA 58.620 33.333 0.00 0.00 28.93 4.37
432 433 7.687941 AACATTTACTTTCAGTACATCCCAG 57.312 36.000 0.00 0.00 28.93 4.45
433 434 6.779860 ACATTTACTTTCAGTACATCCCAGT 58.220 36.000 0.00 0.00 28.93 4.00
434 435 7.231467 ACATTTACTTTCAGTACATCCCAGTT 58.769 34.615 0.00 0.00 28.93 3.16
435 436 7.724061 ACATTTACTTTCAGTACATCCCAGTTT 59.276 33.333 0.00 0.00 28.93 2.66
436 437 7.739498 TTTACTTTCAGTACATCCCAGTTTC 57.261 36.000 0.00 0.00 28.93 2.78
437 438 5.568620 ACTTTCAGTACATCCCAGTTTCT 57.431 39.130 0.00 0.00 0.00 2.52
438 439 5.941788 ACTTTCAGTACATCCCAGTTTCTT 58.058 37.500 0.00 0.00 0.00 2.52
439 440 6.365520 ACTTTCAGTACATCCCAGTTTCTTT 58.634 36.000 0.00 0.00 0.00 2.52
440 441 6.263168 ACTTTCAGTACATCCCAGTTTCTTTG 59.737 38.462 0.00 0.00 0.00 2.77
441 442 4.651778 TCAGTACATCCCAGTTTCTTTGG 58.348 43.478 0.00 0.00 35.41 3.28
442 443 4.349636 TCAGTACATCCCAGTTTCTTTGGA 59.650 41.667 0.00 0.00 37.96 3.53
443 444 5.070001 CAGTACATCCCAGTTTCTTTGGAA 58.930 41.667 0.00 0.00 37.96 3.53
444 445 5.048713 CAGTACATCCCAGTTTCTTTGGAAC 60.049 44.000 0.00 0.00 37.96 3.62
445 446 3.909732 ACATCCCAGTTTCTTTGGAACA 58.090 40.909 0.00 0.00 37.96 3.18
446 447 4.482990 ACATCCCAGTTTCTTTGGAACAT 58.517 39.130 0.00 0.00 39.30 2.71
447 448 5.640147 ACATCCCAGTTTCTTTGGAACATA 58.360 37.500 0.00 0.00 39.30 2.29
448 449 5.476945 ACATCCCAGTTTCTTTGGAACATAC 59.523 40.000 0.00 0.00 39.30 2.39
449 450 4.069304 TCCCAGTTTCTTTGGAACATACG 58.931 43.478 0.00 0.00 39.30 3.06
450 451 4.069304 CCCAGTTTCTTTGGAACATACGA 58.931 43.478 0.00 0.00 39.30 3.43
451 452 4.154195 CCCAGTTTCTTTGGAACATACGAG 59.846 45.833 0.00 0.00 39.30 4.18
452 453 4.378459 CCAGTTTCTTTGGAACATACGAGC 60.378 45.833 0.00 0.00 39.30 5.03
453 454 3.751698 AGTTTCTTTGGAACATACGAGCC 59.248 43.478 0.00 0.00 39.30 4.70
454 455 2.004583 TCTTTGGAACATACGAGCCG 57.995 50.000 0.00 0.00 39.30 5.52
455 456 1.006832 CTTTGGAACATACGAGCCGG 58.993 55.000 0.00 0.00 39.30 6.13
456 457 0.609151 TTTGGAACATACGAGCCGGA 59.391 50.000 5.05 0.00 39.30 5.14
457 458 0.609151 TTGGAACATACGAGCCGGAA 59.391 50.000 5.05 0.00 39.30 4.30
458 459 0.609151 TGGAACATACGAGCCGGAAA 59.391 50.000 5.05 0.00 0.00 3.13
459 460 1.287425 GGAACATACGAGCCGGAAAG 58.713 55.000 5.05 0.00 0.00 2.62
460 461 0.651031 GAACATACGAGCCGGAAAGC 59.349 55.000 5.05 0.00 0.00 3.51
461 462 0.743345 AACATACGAGCCGGAAAGCC 60.743 55.000 5.05 0.00 0.00 4.35
462 463 1.153449 CATACGAGCCGGAAAGCCA 60.153 57.895 5.05 0.00 0.00 4.75
463 464 0.532862 CATACGAGCCGGAAAGCCAT 60.533 55.000 5.05 0.00 0.00 4.40
464 465 0.249911 ATACGAGCCGGAAAGCCATC 60.250 55.000 5.05 0.00 0.00 3.51
465 466 2.306255 TACGAGCCGGAAAGCCATCC 62.306 60.000 5.05 0.00 36.05 3.51
466 467 2.272146 GAGCCGGAAAGCCATCCA 59.728 61.111 5.05 0.00 39.61 3.41
467 468 1.821332 GAGCCGGAAAGCCATCCAG 60.821 63.158 5.05 0.00 39.61 3.86
468 469 2.044946 GCCGGAAAGCCATCCAGT 60.045 61.111 5.05 0.00 39.61 4.00
469 470 2.115291 GCCGGAAAGCCATCCAGTC 61.115 63.158 5.05 0.00 39.61 3.51
470 471 1.452108 CCGGAAAGCCATCCAGTCC 60.452 63.158 0.00 0.00 39.61 3.85
471 472 1.815421 CGGAAAGCCATCCAGTCCG 60.815 63.158 6.23 0.00 44.60 4.79
472 473 1.452108 GGAAAGCCATCCAGTCCGG 60.452 63.158 0.00 0.00 39.42 5.14
480 481 3.820425 TCCAGTCCGGATGCCTTT 58.180 55.556 7.81 0.00 39.64 3.11
481 482 3.000002 TCCAGTCCGGATGCCTTTA 58.000 52.632 7.81 0.00 39.64 1.85
482 483 0.830648 TCCAGTCCGGATGCCTTTAG 59.169 55.000 7.81 0.00 39.64 1.85
483 484 0.815615 CCAGTCCGGATGCCTTTAGC 60.816 60.000 7.81 0.00 38.73 3.09
492 493 4.380980 GCCTTTAGCGGCCCTATC 57.619 61.111 0.00 0.00 44.41 2.08
493 494 1.755384 GCCTTTAGCGGCCCTATCT 59.245 57.895 0.00 0.00 44.41 1.98
494 495 0.603975 GCCTTTAGCGGCCCTATCTG 60.604 60.000 0.00 0.00 44.41 2.90
495 496 0.035458 CCTTTAGCGGCCCTATCTGG 59.965 60.000 0.00 0.00 0.00 3.86
496 497 1.048601 CTTTAGCGGCCCTATCTGGA 58.951 55.000 0.00 0.00 38.35 3.86
497 498 1.416401 CTTTAGCGGCCCTATCTGGAA 59.584 52.381 0.00 0.00 38.35 3.53
498 499 0.756903 TTAGCGGCCCTATCTGGAAC 59.243 55.000 0.00 0.00 38.35 3.62
499 500 0.397957 TAGCGGCCCTATCTGGAACA 60.398 55.000 0.00 0.00 38.35 3.18
500 501 1.223487 GCGGCCCTATCTGGAACAA 59.777 57.895 0.00 0.00 38.70 2.83
501 502 0.393808 GCGGCCCTATCTGGAACAAA 60.394 55.000 0.00 0.00 38.70 2.83
502 503 1.668419 CGGCCCTATCTGGAACAAAG 58.332 55.000 0.00 0.00 38.70 2.77
503 504 1.393603 GGCCCTATCTGGAACAAAGC 58.606 55.000 0.00 0.00 38.70 3.51
504 505 1.340991 GGCCCTATCTGGAACAAAGCA 60.341 52.381 0.00 0.00 38.70 3.91
505 506 2.659428 GCCCTATCTGGAACAAAGCAT 58.341 47.619 0.00 0.00 38.70 3.79
506 507 2.620585 GCCCTATCTGGAACAAAGCATC 59.379 50.000 0.00 0.00 38.70 3.91
507 508 3.217626 CCCTATCTGGAACAAAGCATCC 58.782 50.000 0.00 0.00 38.70 3.51
508 509 2.874701 CCTATCTGGAACAAAGCATCCG 59.125 50.000 0.00 0.00 38.70 4.18
509 510 1.098050 ATCTGGAACAAAGCATCCGC 58.902 50.000 0.00 0.00 38.70 5.54
511 512 7.702636 CCTATCTGGAACAAAGCATCCGCTA 62.703 48.000 0.00 0.00 43.84 4.26
512 513 8.911494 CCTATCTGGAACAAAGCATCCGCTAT 62.911 46.154 0.00 0.00 43.84 2.97
522 523 3.118905 GCATCCGCTATCTCCTTTTCT 57.881 47.619 0.00 0.00 34.30 2.52
523 524 2.805099 GCATCCGCTATCTCCTTTTCTG 59.195 50.000 0.00 0.00 34.30 3.02
524 525 3.742640 GCATCCGCTATCTCCTTTTCTGT 60.743 47.826 0.00 0.00 34.30 3.41
525 526 4.501571 GCATCCGCTATCTCCTTTTCTGTA 60.502 45.833 0.00 0.00 34.30 2.74
526 527 5.601662 CATCCGCTATCTCCTTTTCTGTAA 58.398 41.667 0.00 0.00 0.00 2.41
527 528 5.670792 TCCGCTATCTCCTTTTCTGTAAA 57.329 39.130 0.00 0.00 0.00 2.01
528 529 5.661458 TCCGCTATCTCCTTTTCTGTAAAG 58.339 41.667 0.30 0.30 42.41 1.85
529 530 5.187186 TCCGCTATCTCCTTTTCTGTAAAGT 59.813 40.000 6.12 0.00 41.41 2.66
530 531 5.520649 CCGCTATCTCCTTTTCTGTAAAGTC 59.479 44.000 6.12 0.00 41.41 3.01
531 532 6.100004 CGCTATCTCCTTTTCTGTAAAGTCA 58.900 40.000 6.12 0.00 41.41 3.41
532 533 6.254589 CGCTATCTCCTTTTCTGTAAAGTCAG 59.745 42.308 6.12 2.58 41.41 3.51
533 534 6.036626 GCTATCTCCTTTTCTGTAAAGTCAGC 59.963 42.308 6.12 3.91 41.41 4.26
534 535 5.290493 TCTCCTTTTCTGTAAAGTCAGCA 57.710 39.130 6.12 0.00 41.41 4.41
535 536 5.057149 TCTCCTTTTCTGTAAAGTCAGCAC 58.943 41.667 6.12 0.00 41.41 4.40
536 537 4.776349 TCCTTTTCTGTAAAGTCAGCACA 58.224 39.130 6.12 0.00 41.41 4.57
537 538 4.574828 TCCTTTTCTGTAAAGTCAGCACAC 59.425 41.667 6.12 0.00 41.41 3.82
538 539 4.335315 CCTTTTCTGTAAAGTCAGCACACA 59.665 41.667 6.12 0.00 41.41 3.72
539 540 5.484173 TTTTCTGTAAAGTCAGCACACAG 57.516 39.130 0.00 0.00 38.34 3.66
540 541 3.819564 TCTGTAAAGTCAGCACACAGT 57.180 42.857 0.00 0.00 38.20 3.55
541 542 3.717707 TCTGTAAAGTCAGCACACAGTC 58.282 45.455 0.00 0.00 38.20 3.51
657 659 5.305128 TCCAGCTCAATTTTTGGTTTCTGAT 59.695 36.000 0.00 0.00 32.51 2.90
781 786 0.459585 GCCGCGATTCTGGACTAACA 60.460 55.000 8.23 0.00 0.00 2.41
937 1056 2.753009 ATTGCCAGCAGCTCCAACGA 62.753 55.000 7.08 0.00 44.23 3.85
1040 1159 4.019174 CTGGATTTACACTTGGATTGCCT 58.981 43.478 0.00 0.00 34.31 4.75
1178 1305 4.319694 GCATTTGGTTTCCTCATTTGTTGC 60.320 41.667 0.00 0.00 0.00 4.17
1189 1316 5.471797 TCCTCATTTGTTGCGATTTGTAGAA 59.528 36.000 0.00 0.00 0.00 2.10
1495 1703 4.142790 CCTATCTGCTTAGTCGGTAGGAA 58.857 47.826 4.08 0.00 31.12 3.36
1513 1721 3.010138 AGGAAAATAGGTTAGTGCAGCCA 59.990 43.478 0.00 0.00 0.00 4.75
1521 1729 1.535462 GTTAGTGCAGCCATGTTCGTT 59.465 47.619 0.00 0.00 0.00 3.85
1586 1794 6.513230 GCATGTTCGCCAGTAATGAATTATGA 60.513 38.462 0.00 0.00 0.00 2.15
1658 1903 3.431766 GGTGTTACTGTGAATAGCCGGAT 60.432 47.826 5.05 0.00 0.00 4.18
1679 1924 3.708451 TGGCAGATCAGACTTACCACTA 58.292 45.455 0.00 0.00 0.00 2.74
1688 1935 3.055094 CAGACTTACCACTACCCTGCAAT 60.055 47.826 0.00 0.00 0.00 3.56
1690 1937 4.781087 AGACTTACCACTACCCTGCAATAA 59.219 41.667 0.00 0.00 0.00 1.40
1691 1938 5.249852 AGACTTACCACTACCCTGCAATAAA 59.750 40.000 0.00 0.00 0.00 1.40
1692 1939 6.069615 AGACTTACCACTACCCTGCAATAAAT 60.070 38.462 0.00 0.00 0.00 1.40
1693 1940 6.120220 ACTTACCACTACCCTGCAATAAATC 58.880 40.000 0.00 0.00 0.00 2.17
1694 1941 4.584638 ACCACTACCCTGCAATAAATCA 57.415 40.909 0.00 0.00 0.00 2.57
1707 1954 7.283127 CCTGCAATAAATCACACTTGTACCTAT 59.717 37.037 0.00 0.00 0.00 2.57
1777 2031 2.609610 CCCTCCCCAACCCGAAGA 60.610 66.667 0.00 0.00 0.00 2.87
1778 2032 2.228480 CCCTCCCCAACCCGAAGAA 61.228 63.158 0.00 0.00 0.00 2.52
1779 2033 1.299976 CCTCCCCAACCCGAAGAAG 59.700 63.158 0.00 0.00 0.00 2.85
1780 2034 1.377333 CTCCCCAACCCGAAGAAGC 60.377 63.158 0.00 0.00 0.00 3.86
1781 2035 2.124507 CTCCCCAACCCGAAGAAGCA 62.125 60.000 0.00 0.00 0.00 3.91
1782 2036 1.971695 CCCCAACCCGAAGAAGCAC 60.972 63.158 0.00 0.00 0.00 4.40
1783 2037 1.971695 CCCAACCCGAAGAAGCACC 60.972 63.158 0.00 0.00 0.00 5.01
1784 2038 1.971695 CCAACCCGAAGAAGCACCC 60.972 63.158 0.00 0.00 0.00 4.61
1785 2039 2.032071 AACCCGAAGAAGCACCCG 59.968 61.111 0.00 0.00 0.00 5.28
1786 2040 3.546714 AACCCGAAGAAGCACCCGG 62.547 63.158 0.00 0.00 41.47 5.73
1809 2063 3.508840 CGTTCCCTTGGCGGCATC 61.509 66.667 14.32 0.00 0.00 3.91
1810 2064 3.508840 GTTCCCTTGGCGGCATCG 61.509 66.667 14.32 7.19 39.81 3.84
1811 2065 4.028490 TTCCCTTGGCGGCATCGT 62.028 61.111 14.32 0.00 38.89 3.73
1812 2066 3.969250 TTCCCTTGGCGGCATCGTC 62.969 63.158 14.32 0.00 42.06 4.20
1813 2067 4.473520 CCCTTGGCGGCATCGTCT 62.474 66.667 14.32 0.00 42.24 4.18
1814 2068 2.436646 CCTTGGCGGCATCGTCTT 60.437 61.111 14.32 0.00 42.24 3.01
1815 2069 2.753966 CCTTGGCGGCATCGTCTTG 61.754 63.158 14.32 0.00 42.24 3.02
1816 2070 2.745884 TTGGCGGCATCGTCTTGG 60.746 61.111 14.32 0.00 42.24 3.61
1817 2071 3.247056 TTGGCGGCATCGTCTTGGA 62.247 57.895 14.32 0.00 42.24 3.53
1818 2072 2.892425 GGCGGCATCGTCTTGGAG 60.892 66.667 3.07 0.00 38.10 3.86
1819 2073 2.892425 GCGGCATCGTCTTGGAGG 60.892 66.667 0.00 0.00 38.89 4.30
1820 2074 2.579201 CGGCATCGTCTTGGAGGT 59.421 61.111 0.00 0.00 0.00 3.85
1821 2075 1.519455 CGGCATCGTCTTGGAGGTC 60.519 63.158 0.00 0.00 0.00 3.85
1822 2076 1.901085 GGCATCGTCTTGGAGGTCT 59.099 57.895 0.00 0.00 0.00 3.85
1823 2077 1.112113 GGCATCGTCTTGGAGGTCTA 58.888 55.000 0.00 0.00 0.00 2.59
1824 2078 1.689273 GGCATCGTCTTGGAGGTCTAT 59.311 52.381 0.00 0.00 0.00 1.98
1825 2079 2.288518 GGCATCGTCTTGGAGGTCTATC 60.289 54.545 0.00 0.00 0.00 2.08
1826 2080 2.288518 GCATCGTCTTGGAGGTCTATCC 60.289 54.545 0.00 0.00 40.03 2.59
1827 2081 1.676746 TCGTCTTGGAGGTCTATCCG 58.323 55.000 0.00 0.00 42.77 4.18
1828 2082 1.211212 TCGTCTTGGAGGTCTATCCGA 59.789 52.381 0.00 0.00 42.77 4.55
1829 2083 2.158652 TCGTCTTGGAGGTCTATCCGAT 60.159 50.000 0.00 0.00 42.77 4.18
1830 2084 2.623889 CGTCTTGGAGGTCTATCCGATT 59.376 50.000 0.00 0.00 42.77 3.34
1831 2085 3.819337 CGTCTTGGAGGTCTATCCGATTA 59.181 47.826 0.00 0.00 42.77 1.75
1832 2086 4.083217 CGTCTTGGAGGTCTATCCGATTAG 60.083 50.000 0.00 0.00 42.77 1.73
1833 2087 5.071370 GTCTTGGAGGTCTATCCGATTAGA 58.929 45.833 0.00 0.00 42.77 2.10
1834 2088 5.182380 GTCTTGGAGGTCTATCCGATTAGAG 59.818 48.000 0.00 0.00 42.77 2.43
1835 2089 4.035612 TGGAGGTCTATCCGATTAGAGG 57.964 50.000 0.00 0.00 42.77 3.69
1836 2090 3.245300 TGGAGGTCTATCCGATTAGAGGG 60.245 52.174 0.00 0.00 42.77 4.30
1837 2091 3.010361 GGAGGTCTATCCGATTAGAGGGA 59.990 52.174 0.00 0.00 41.99 4.20
1838 2092 4.011698 GAGGTCTATCCGATTAGAGGGAC 58.988 52.174 0.00 0.00 41.99 4.46
1839 2093 3.090790 GGTCTATCCGATTAGAGGGACC 58.909 54.545 0.00 0.00 35.60 4.46
1840 2094 3.090790 GTCTATCCGATTAGAGGGACCC 58.909 54.545 0.59 0.59 34.58 4.46
1841 2095 2.093106 CTATCCGATTAGAGGGACCCG 58.907 57.143 4.40 0.00 34.58 5.28
1842 2096 0.187851 ATCCGATTAGAGGGACCCGT 59.812 55.000 4.40 0.00 34.58 5.28
1843 2097 0.754217 TCCGATTAGAGGGACCCGTG 60.754 60.000 4.40 0.00 0.00 4.94
1844 2098 1.740285 CGATTAGAGGGACCCGTGG 59.260 63.158 4.40 0.00 0.00 4.94
1845 2099 1.446366 GATTAGAGGGACCCGTGGC 59.554 63.158 4.40 0.00 0.00 5.01
1846 2100 1.003051 ATTAGAGGGACCCGTGGCT 59.997 57.895 4.40 4.25 0.00 4.75
1847 2101 0.263765 ATTAGAGGGACCCGTGGCTA 59.736 55.000 4.40 3.24 0.00 3.93
1848 2102 0.263765 TTAGAGGGACCCGTGGCTAT 59.736 55.000 4.40 0.00 0.00 2.97
1849 2103 0.469331 TAGAGGGACCCGTGGCTATG 60.469 60.000 4.40 0.00 0.00 2.23
1850 2104 1.760875 GAGGGACCCGTGGCTATGA 60.761 63.158 4.40 0.00 0.00 2.15
1851 2105 1.749334 GAGGGACCCGTGGCTATGAG 61.749 65.000 4.40 0.00 0.00 2.90
1852 2106 2.808206 GGGACCCGTGGCTATGAGG 61.808 68.421 0.00 0.00 0.00 3.86
1853 2107 1.760875 GGACCCGTGGCTATGAGGA 60.761 63.158 4.24 0.00 0.00 3.71
1854 2108 1.122019 GGACCCGTGGCTATGAGGAT 61.122 60.000 4.24 0.00 0.00 3.24
1855 2109 0.034059 GACCCGTGGCTATGAGGATG 59.966 60.000 4.24 0.00 0.00 3.51
1856 2110 0.691078 ACCCGTGGCTATGAGGATGT 60.691 55.000 4.24 0.00 0.00 3.06
1857 2111 0.250038 CCCGTGGCTATGAGGATGTG 60.250 60.000 0.00 0.00 0.00 3.21
1858 2112 0.465705 CCGTGGCTATGAGGATGTGT 59.534 55.000 0.00 0.00 0.00 3.72
1859 2113 1.575244 CGTGGCTATGAGGATGTGTG 58.425 55.000 0.00 0.00 0.00 3.82
1860 2114 1.134699 CGTGGCTATGAGGATGTGTGT 60.135 52.381 0.00 0.00 0.00 3.72
1861 2115 2.677902 CGTGGCTATGAGGATGTGTGTT 60.678 50.000 0.00 0.00 0.00 3.32
1862 2116 2.679837 GTGGCTATGAGGATGTGTGTTG 59.320 50.000 0.00 0.00 0.00 3.33
1863 2117 2.305635 TGGCTATGAGGATGTGTGTTGT 59.694 45.455 0.00 0.00 0.00 3.32
1864 2118 3.244875 TGGCTATGAGGATGTGTGTTGTT 60.245 43.478 0.00 0.00 0.00 2.83
1865 2119 3.758554 GGCTATGAGGATGTGTGTTGTTT 59.241 43.478 0.00 0.00 0.00 2.83
1866 2120 4.379813 GGCTATGAGGATGTGTGTTGTTTG 60.380 45.833 0.00 0.00 0.00 2.93
1867 2121 3.648339 ATGAGGATGTGTGTTGTTTGC 57.352 42.857 0.00 0.00 0.00 3.68
1868 2122 1.680735 TGAGGATGTGTGTTGTTTGCC 59.319 47.619 0.00 0.00 0.00 4.52
1869 2123 0.667993 AGGATGTGTGTTGTTTGCCG 59.332 50.000 0.00 0.00 0.00 5.69
1870 2124 0.665835 GGATGTGTGTTGTTTGCCGA 59.334 50.000 0.00 0.00 0.00 5.54
1871 2125 1.066303 GGATGTGTGTTGTTTGCCGAA 59.934 47.619 0.00 0.00 0.00 4.30
1872 2126 2.480416 GGATGTGTGTTGTTTGCCGAAA 60.480 45.455 0.00 0.00 0.00 3.46
1873 2127 2.270275 TGTGTGTTGTTTGCCGAAAG 57.730 45.000 0.00 0.00 0.00 2.62
1887 2141 1.882198 CGAAAGGCGCAGTTTGTATG 58.118 50.000 10.83 0.00 0.00 2.39
1888 2142 1.463056 CGAAAGGCGCAGTTTGTATGA 59.537 47.619 10.83 0.00 0.00 2.15
1889 2143 2.095853 CGAAAGGCGCAGTTTGTATGAT 59.904 45.455 10.83 0.00 0.00 2.45
1890 2144 3.426159 CGAAAGGCGCAGTTTGTATGATT 60.426 43.478 10.83 0.00 0.00 2.57
1891 2145 4.485163 GAAAGGCGCAGTTTGTATGATTT 58.515 39.130 10.83 0.00 0.00 2.17
1892 2146 4.519540 AAGGCGCAGTTTGTATGATTTT 57.480 36.364 10.83 0.00 0.00 1.82
1893 2147 4.519540 AGGCGCAGTTTGTATGATTTTT 57.480 36.364 10.83 0.00 0.00 1.94
1894 2148 5.637006 AGGCGCAGTTTGTATGATTTTTA 57.363 34.783 10.83 0.00 0.00 1.52
1895 2149 6.207691 AGGCGCAGTTTGTATGATTTTTAT 57.792 33.333 10.83 0.00 0.00 1.40
1896 2150 6.035843 AGGCGCAGTTTGTATGATTTTTATG 58.964 36.000 10.83 0.00 0.00 1.90
1897 2151 5.804979 GGCGCAGTTTGTATGATTTTTATGT 59.195 36.000 10.83 0.00 0.00 2.29
1898 2152 6.310224 GGCGCAGTTTGTATGATTTTTATGTT 59.690 34.615 10.83 0.00 0.00 2.71
1899 2153 7.383361 GCGCAGTTTGTATGATTTTTATGTTC 58.617 34.615 0.30 0.00 0.00 3.18
1900 2154 7.591407 CGCAGTTTGTATGATTTTTATGTTCG 58.409 34.615 0.00 0.00 0.00 3.95
1901 2155 7.253288 CGCAGTTTGTATGATTTTTATGTTCGG 60.253 37.037 0.00 0.00 0.00 4.30
1902 2156 7.540745 GCAGTTTGTATGATTTTTATGTTCGGT 59.459 33.333 0.00 0.00 0.00 4.69
1903 2157 9.405587 CAGTTTGTATGATTTTTATGTTCGGTT 57.594 29.630 0.00 0.00 0.00 4.44
1904 2158 9.974980 AGTTTGTATGATTTTTATGTTCGGTTT 57.025 25.926 0.00 0.00 0.00 3.27
1907 2161 8.973835 TGTATGATTTTTATGTTCGGTTTTCC 57.026 30.769 0.00 0.00 0.00 3.13
1908 2162 8.798402 TGTATGATTTTTATGTTCGGTTTTCCT 58.202 29.630 0.00 0.00 37.95 3.36
1909 2163 9.285770 GTATGATTTTTATGTTCGGTTTTCCTC 57.714 33.333 0.00 0.00 37.95 3.71
1910 2164 7.278461 TGATTTTTATGTTCGGTTTTCCTCA 57.722 32.000 0.00 0.00 37.95 3.86
1911 2165 7.891561 TGATTTTTATGTTCGGTTTTCCTCAT 58.108 30.769 0.00 0.00 37.95 2.90
1912 2166 9.015367 TGATTTTTATGTTCGGTTTTCCTCATA 57.985 29.630 0.00 0.00 37.95 2.15
1913 2167 9.849166 GATTTTTATGTTCGGTTTTCCTCATAA 57.151 29.630 0.00 0.00 35.83 1.90
1915 2169 9.685828 TTTTTATGTTCGGTTTTCCTCATAAAG 57.314 29.630 0.00 0.00 40.97 1.85
1916 2170 7.989416 TTATGTTCGGTTTTCCTCATAAAGT 57.011 32.000 0.00 0.00 35.33 2.66
1917 2171 5.682943 TGTTCGGTTTTCCTCATAAAGTG 57.317 39.130 0.00 0.00 37.95 3.16
1918 2172 4.517453 TGTTCGGTTTTCCTCATAAAGTGG 59.483 41.667 0.00 0.00 37.95 4.00
1919 2173 4.627284 TCGGTTTTCCTCATAAAGTGGA 57.373 40.909 0.00 0.00 38.10 4.02
1920 2174 4.320870 TCGGTTTTCCTCATAAAGTGGAC 58.679 43.478 0.00 0.00 39.51 4.02
1921 2175 3.439129 CGGTTTTCCTCATAAAGTGGACC 59.561 47.826 0.00 0.00 39.51 4.46
1922 2176 4.403734 GGTTTTCCTCATAAAGTGGACCA 58.596 43.478 0.00 0.00 39.51 4.02
1923 2177 4.830600 GGTTTTCCTCATAAAGTGGACCAA 59.169 41.667 0.00 0.00 39.51 3.67
1924 2178 5.278808 GGTTTTCCTCATAAAGTGGACCAAC 60.279 44.000 0.00 0.00 39.51 3.77
1925 2179 3.713826 TCCTCATAAAGTGGACCAACC 57.286 47.619 0.00 0.00 35.06 3.77
1926 2180 3.256704 TCCTCATAAAGTGGACCAACCT 58.743 45.455 0.00 0.00 39.86 3.50
1927 2181 3.263425 TCCTCATAAAGTGGACCAACCTC 59.737 47.826 0.00 0.00 39.86 3.85
1928 2182 3.610911 CTCATAAAGTGGACCAACCTCC 58.389 50.000 0.00 0.00 39.86 4.30
1929 2183 3.256704 TCATAAAGTGGACCAACCTCCT 58.743 45.455 0.00 0.00 39.86 3.69
1930 2184 3.655777 TCATAAAGTGGACCAACCTCCTT 59.344 43.478 0.00 0.00 39.86 3.36
1931 2185 2.658807 AAAGTGGACCAACCTCCTTC 57.341 50.000 0.00 0.00 39.86 3.46
1932 2186 1.821088 AAGTGGACCAACCTCCTTCT 58.179 50.000 0.00 0.00 39.86 2.85
1933 2187 1.353091 AGTGGACCAACCTCCTTCTC 58.647 55.000 0.00 0.00 39.86 2.87
1934 2188 0.325272 GTGGACCAACCTCCTTCTCC 59.675 60.000 0.00 0.00 39.86 3.71
1935 2189 0.193574 TGGACCAACCTCCTTCTCCT 59.806 55.000 0.00 0.00 39.86 3.69
1936 2190 0.615850 GGACCAACCTCCTTCTCCTG 59.384 60.000 0.00 0.00 35.41 3.86
1937 2191 1.353091 GACCAACCTCCTTCTCCTGT 58.647 55.000 0.00 0.00 0.00 4.00
1938 2192 1.700186 GACCAACCTCCTTCTCCTGTT 59.300 52.381 0.00 0.00 0.00 3.16
1939 2193 1.700186 ACCAACCTCCTTCTCCTGTTC 59.300 52.381 0.00 0.00 0.00 3.18
1940 2194 1.699634 CCAACCTCCTTCTCCTGTTCA 59.300 52.381 0.00 0.00 0.00 3.18
1941 2195 2.106511 CCAACCTCCTTCTCCTGTTCAA 59.893 50.000 0.00 0.00 0.00 2.69
1942 2196 3.245052 CCAACCTCCTTCTCCTGTTCAAT 60.245 47.826 0.00 0.00 0.00 2.57
1943 2197 3.710209 ACCTCCTTCTCCTGTTCAATG 57.290 47.619 0.00 0.00 0.00 2.82
1944 2198 3.251484 ACCTCCTTCTCCTGTTCAATGA 58.749 45.455 0.00 0.00 0.00 2.57
1945 2199 3.652869 ACCTCCTTCTCCTGTTCAATGAA 59.347 43.478 0.00 0.00 0.00 2.57
1946 2200 4.290722 ACCTCCTTCTCCTGTTCAATGAAT 59.709 41.667 0.00 0.00 0.00 2.57
1947 2201 5.222213 ACCTCCTTCTCCTGTTCAATGAATT 60.222 40.000 0.00 0.00 0.00 2.17
1948 2202 5.713861 CCTCCTTCTCCTGTTCAATGAATTT 59.286 40.000 0.00 0.00 0.00 1.82
1949 2203 6.886459 CCTCCTTCTCCTGTTCAATGAATTTA 59.114 38.462 0.00 0.00 0.00 1.40
1950 2204 7.066766 CCTCCTTCTCCTGTTCAATGAATTTAG 59.933 40.741 0.00 0.00 0.00 1.85
1951 2205 6.375455 TCCTTCTCCTGTTCAATGAATTTAGC 59.625 38.462 0.00 0.00 0.00 3.09
1952 2206 6.151648 CCTTCTCCTGTTCAATGAATTTAGCA 59.848 38.462 0.00 0.00 0.00 3.49
1953 2207 6.748333 TCTCCTGTTCAATGAATTTAGCAG 57.252 37.500 0.00 1.39 0.00 4.24
1954 2208 6.240894 TCTCCTGTTCAATGAATTTAGCAGT 58.759 36.000 0.00 0.00 0.00 4.40
1955 2209 7.394016 TCTCCTGTTCAATGAATTTAGCAGTA 58.606 34.615 0.00 0.00 0.00 2.74
1956 2210 7.882791 TCTCCTGTTCAATGAATTTAGCAGTAA 59.117 33.333 0.00 0.00 0.00 2.24
1957 2211 8.579850 TCCTGTTCAATGAATTTAGCAGTAAT 57.420 30.769 0.00 0.00 0.00 1.89
1958 2212 8.677300 TCCTGTTCAATGAATTTAGCAGTAATC 58.323 33.333 0.00 0.00 0.00 1.75
1959 2213 7.917505 CCTGTTCAATGAATTTAGCAGTAATCC 59.082 37.037 0.00 0.00 0.00 3.01
1960 2214 8.579850 TGTTCAATGAATTTAGCAGTAATCCT 57.420 30.769 0.00 0.00 0.00 3.24
1961 2215 9.679661 TGTTCAATGAATTTAGCAGTAATCCTA 57.320 29.630 0.00 0.00 0.00 2.94
1964 2218 9.679661 TCAATGAATTTAGCAGTAATCCTAACA 57.320 29.630 0.00 0.00 0.00 2.41
1968 2222 8.826710 TGAATTTAGCAGTAATCCTAACATTCG 58.173 33.333 0.00 0.00 32.02 3.34
1969 2223 7.730364 ATTTAGCAGTAATCCTAACATTCGG 57.270 36.000 0.00 0.00 0.00 4.30
1970 2224 6.474140 TTAGCAGTAATCCTAACATTCGGA 57.526 37.500 0.00 0.00 0.00 4.55
1971 2225 5.353394 AGCAGTAATCCTAACATTCGGAA 57.647 39.130 0.00 0.00 32.12 4.30
1972 2226 5.741011 AGCAGTAATCCTAACATTCGGAAA 58.259 37.500 0.00 0.00 32.12 3.13
1973 2227 6.177610 AGCAGTAATCCTAACATTCGGAAAA 58.822 36.000 0.00 0.00 32.12 2.29
1974 2228 6.657541 AGCAGTAATCCTAACATTCGGAAAAA 59.342 34.615 0.00 0.00 32.12 1.94
2069 2327 2.280524 CGTCTCCACCACCGCAAA 60.281 61.111 0.00 0.00 0.00 3.68
2200 2459 3.930336 TGCAAAGTACAGATCACTCCTG 58.070 45.455 0.00 0.00 37.64 3.86
2260 2527 3.153369 TCCTTTTAGCCTGTCAATGCA 57.847 42.857 0.00 0.00 0.00 3.96
2261 2528 3.495331 TCCTTTTAGCCTGTCAATGCAA 58.505 40.909 0.00 0.00 0.00 4.08
2307 2576 1.986378 CGAGGCAGAACTACTTTGTCG 59.014 52.381 0.00 0.00 0.00 4.35
2310 2579 2.891580 AGGCAGAACTACTTTGTCGAGA 59.108 45.455 0.00 0.00 0.00 4.04
2403 2673 5.719085 GTCTGATATCACTGGACATAGGGAT 59.281 44.000 15.25 0.00 43.10 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.731217 CAAAAGTTGGGTTTCGCTCAG 58.269 47.619 0.00 0.00 0.00 3.35
10 11 1.202359 GCAAAAGTTGGGTTTCGCTCA 60.202 47.619 0.00 0.00 0.00 4.26
14 15 3.090952 TGATGCAAAAGTTGGGTTTCG 57.909 42.857 0.00 0.00 0.00 3.46
57 58 5.479375 CCTATCTAAAGCTTATGACCGGGTA 59.521 44.000 6.32 0.00 0.00 3.69
62 63 7.501844 ACTTGACCTATCTAAAGCTTATGACC 58.498 38.462 0.00 0.00 0.00 4.02
63 64 8.950208 AACTTGACCTATCTAAAGCTTATGAC 57.050 34.615 0.00 0.00 0.00 3.06
69 70 7.337184 GCCTTTAAACTTGACCTATCTAAAGCT 59.663 37.037 0.00 0.00 0.00 3.74
72 73 7.940137 TGTGCCTTTAAACTTGACCTATCTAAA 59.060 33.333 0.00 0.00 0.00 1.85
75 76 5.876357 TGTGCCTTTAAACTTGACCTATCT 58.124 37.500 0.00 0.00 0.00 1.98
78 79 6.777213 TTTTGTGCCTTTAAACTTGACCTA 57.223 33.333 0.00 0.00 0.00 3.08
81 82 6.961359 AGTTTTTGTGCCTTTAAACTTGAC 57.039 33.333 0.00 0.00 37.50 3.18
91 92 3.633986 CCAGAGAGAAGTTTTTGTGCCTT 59.366 43.478 0.00 0.00 0.00 4.35
93 94 3.214328 TCCAGAGAGAAGTTTTTGTGCC 58.786 45.455 0.00 0.00 0.00 5.01
94 95 4.083057 GGATCCAGAGAGAAGTTTTTGTGC 60.083 45.833 6.95 0.00 0.00 4.57
95 96 5.312079 AGGATCCAGAGAGAAGTTTTTGTG 58.688 41.667 15.82 0.00 0.00 3.33
105 106 2.503356 GCAGGAAAAGGATCCAGAGAGA 59.497 50.000 15.82 0.00 42.27 3.10
106 107 2.504996 AGCAGGAAAAGGATCCAGAGAG 59.495 50.000 15.82 0.00 42.27 3.20
110 111 2.795231 TCAGCAGGAAAAGGATCCAG 57.205 50.000 15.82 0.00 42.27 3.86
114 115 4.891756 CACCATATTCAGCAGGAAAAGGAT 59.108 41.667 11.22 0.00 39.39 3.24
138 139 4.003648 CTCTTTTGGCCTTCGAGTGTATT 58.996 43.478 3.32 0.00 0.00 1.89
141 142 1.884235 CTCTTTTGGCCTTCGAGTGT 58.116 50.000 3.32 0.00 0.00 3.55
147 148 4.400567 ACTGATAATGCTCTTTTGGCCTTC 59.599 41.667 3.32 0.00 0.00 3.46
150 151 5.835113 TTACTGATAATGCTCTTTTGGCC 57.165 39.130 0.00 0.00 0.00 5.36
151 152 7.031226 TGATTACTGATAATGCTCTTTTGGC 57.969 36.000 0.00 0.00 30.77 4.52
165 166 3.582647 TGCCCGGACATATGATTACTGAT 59.417 43.478 10.38 0.00 0.00 2.90
171 172 2.727123 TTGTGCCCGGACATATGATT 57.273 45.000 10.38 0.00 0.00 2.57
172 173 2.575532 CTTTGTGCCCGGACATATGAT 58.424 47.619 10.38 0.00 0.00 2.45
177 178 2.676471 GCCTTTGTGCCCGGACAT 60.676 61.111 0.73 0.00 0.00 3.06
195 196 1.656652 TTATCTCGCCAGCTCAAAGC 58.343 50.000 0.00 0.00 42.84 3.51
230 231 3.842925 TTGGTGAACCGCCTCAGGC 62.843 63.158 5.22 5.22 46.75 4.85
231 232 1.228124 TTTGGTGAACCGCCTCAGG 60.228 57.895 0.00 0.00 39.43 3.86
233 234 0.179004 ATGTTTGGTGAACCGCCTCA 60.179 50.000 0.00 0.00 39.43 3.86
234 235 0.958822 AATGTTTGGTGAACCGCCTC 59.041 50.000 0.00 0.00 39.43 4.70
237 238 1.260297 GCAAAATGTTTGGTGAACCGC 59.740 47.619 3.12 0.00 39.43 5.68
243 244 3.269178 AGTGGTTGCAAAATGTTTGGTG 58.731 40.909 0.00 0.00 0.00 4.17
246 247 5.294050 ACAAAGTGGTTGCAAAATGTTTG 57.706 34.783 17.52 17.52 41.31 2.93
249 250 8.608317 GTTATTTACAAAGTGGTTGCAAAATGT 58.392 29.630 0.00 3.17 41.31 2.71
252 253 8.723942 ATGTTATTTACAAAGTGGTTGCAAAA 57.276 26.923 0.00 0.00 41.31 2.44
270 271 6.712547 GGCCTATTAGTCTCTGCAATGTTATT 59.287 38.462 0.00 0.00 0.00 1.40
273 274 4.164988 AGGCCTATTAGTCTCTGCAATGTT 59.835 41.667 1.29 0.00 0.00 2.71
279 280 4.408182 TTTCAGGCCTATTAGTCTCTGC 57.592 45.455 3.98 0.00 0.00 4.26
294 295 5.065218 CCCGATAAAACTGACTGATTTCAGG 59.935 44.000 11.99 0.00 46.38 3.86
296 297 5.556915 ACCCGATAAAACTGACTGATTTCA 58.443 37.500 0.00 0.00 0.00 2.69
297 298 6.072673 ACAACCCGATAAAACTGACTGATTTC 60.073 38.462 0.00 0.00 0.00 2.17
298 299 5.768164 ACAACCCGATAAAACTGACTGATTT 59.232 36.000 0.00 0.00 0.00 2.17
299 300 5.313712 ACAACCCGATAAAACTGACTGATT 58.686 37.500 0.00 0.00 0.00 2.57
300 301 4.906618 ACAACCCGATAAAACTGACTGAT 58.093 39.130 0.00 0.00 0.00 2.90
301 302 4.039973 AGACAACCCGATAAAACTGACTGA 59.960 41.667 0.00 0.00 0.00 3.41
302 303 4.315803 AGACAACCCGATAAAACTGACTG 58.684 43.478 0.00 0.00 0.00 3.51
303 304 4.618920 AGACAACCCGATAAAACTGACT 57.381 40.909 0.00 0.00 0.00 3.41
304 305 5.476614 AGTAGACAACCCGATAAAACTGAC 58.523 41.667 0.00 0.00 0.00 3.51
305 306 5.733620 AGTAGACAACCCGATAAAACTGA 57.266 39.130 0.00 0.00 0.00 3.41
306 307 6.348213 CCAAAGTAGACAACCCGATAAAACTG 60.348 42.308 0.00 0.00 0.00 3.16
307 308 5.704053 CCAAAGTAGACAACCCGATAAAACT 59.296 40.000 0.00 0.00 0.00 2.66
308 309 5.106436 CCCAAAGTAGACAACCCGATAAAAC 60.106 44.000 0.00 0.00 0.00 2.43
309 310 5.005094 CCCAAAGTAGACAACCCGATAAAA 58.995 41.667 0.00 0.00 0.00 1.52
310 311 4.566070 CCCCAAAGTAGACAACCCGATAAA 60.566 45.833 0.00 0.00 0.00 1.40
311 312 3.054948 CCCCAAAGTAGACAACCCGATAA 60.055 47.826 0.00 0.00 0.00 1.75
312 313 2.502538 CCCCAAAGTAGACAACCCGATA 59.497 50.000 0.00 0.00 0.00 2.92
313 314 1.280998 CCCCAAAGTAGACAACCCGAT 59.719 52.381 0.00 0.00 0.00 4.18
314 315 0.688487 CCCCAAAGTAGACAACCCGA 59.312 55.000 0.00 0.00 0.00 5.14
315 316 0.688487 TCCCCAAAGTAGACAACCCG 59.312 55.000 0.00 0.00 0.00 5.28
316 317 2.307686 TCATCCCCAAAGTAGACAACCC 59.692 50.000 0.00 0.00 0.00 4.11
317 318 3.263425 TCTCATCCCCAAAGTAGACAACC 59.737 47.826 0.00 0.00 0.00 3.77
318 319 4.553330 TCTCATCCCCAAAGTAGACAAC 57.447 45.455 0.00 0.00 0.00 3.32
319 320 4.349636 TGTTCTCATCCCCAAAGTAGACAA 59.650 41.667 0.00 0.00 0.00 3.18
320 321 3.907474 TGTTCTCATCCCCAAAGTAGACA 59.093 43.478 0.00 0.00 0.00 3.41
321 322 4.553330 TGTTCTCATCCCCAAAGTAGAC 57.447 45.455 0.00 0.00 0.00 2.59
322 323 5.779241 ATTGTTCTCATCCCCAAAGTAGA 57.221 39.130 0.00 0.00 0.00 2.59
323 324 5.711976 ACAATTGTTCTCATCCCCAAAGTAG 59.288 40.000 4.92 0.00 0.00 2.57
324 325 5.640147 ACAATTGTTCTCATCCCCAAAGTA 58.360 37.500 4.92 0.00 0.00 2.24
325 326 4.482990 ACAATTGTTCTCATCCCCAAAGT 58.517 39.130 4.92 0.00 0.00 2.66
326 327 4.379813 CGACAATTGTTCTCATCCCCAAAG 60.380 45.833 13.36 0.00 0.00 2.77
327 328 3.505680 CGACAATTGTTCTCATCCCCAAA 59.494 43.478 13.36 0.00 0.00 3.28
328 329 3.081061 CGACAATTGTTCTCATCCCCAA 58.919 45.455 13.36 0.00 0.00 4.12
329 330 2.039746 ACGACAATTGTTCTCATCCCCA 59.960 45.455 13.36 0.00 0.00 4.96
330 331 2.711542 ACGACAATTGTTCTCATCCCC 58.288 47.619 13.36 0.00 0.00 4.81
331 332 7.730364 ATAATACGACAATTGTTCTCATCCC 57.270 36.000 13.36 0.00 0.00 3.85
336 337 9.698617 GGTGTTAATAATACGACAATTGTTCTC 57.301 33.333 13.36 0.00 0.00 2.87
337 338 8.671028 GGGTGTTAATAATACGACAATTGTTCT 58.329 33.333 13.36 3.42 0.00 3.01
338 339 8.671028 AGGGTGTTAATAATACGACAATTGTTC 58.329 33.333 13.36 5.34 0.00 3.18
339 340 8.570068 AGGGTGTTAATAATACGACAATTGTT 57.430 30.769 13.36 0.00 0.00 2.83
340 341 8.044908 AGAGGGTGTTAATAATACGACAATTGT 58.955 33.333 11.78 11.78 0.00 2.71
341 342 8.335356 CAGAGGGTGTTAATAATACGACAATTG 58.665 37.037 3.24 3.24 0.00 2.32
342 343 7.497909 CCAGAGGGTGTTAATAATACGACAATT 59.502 37.037 0.00 0.00 0.00 2.32
343 344 6.990349 CCAGAGGGTGTTAATAATACGACAAT 59.010 38.462 0.00 0.00 0.00 2.71
344 345 6.342906 CCAGAGGGTGTTAATAATACGACAA 58.657 40.000 0.00 0.00 0.00 3.18
345 346 5.682990 GCCAGAGGGTGTTAATAATACGACA 60.683 44.000 0.00 0.00 36.17 4.35
346 347 4.748600 GCCAGAGGGTGTTAATAATACGAC 59.251 45.833 0.00 0.00 36.17 4.34
347 348 4.406326 TGCCAGAGGGTGTTAATAATACGA 59.594 41.667 0.00 0.00 36.17 3.43
348 349 4.699637 TGCCAGAGGGTGTTAATAATACG 58.300 43.478 0.00 0.00 36.17 3.06
349 350 6.204882 GTCATGCCAGAGGGTGTTAATAATAC 59.795 42.308 0.00 0.00 36.17 1.89
350 351 6.101150 AGTCATGCCAGAGGGTGTTAATAATA 59.899 38.462 0.00 0.00 36.17 0.98
351 352 5.103940 AGTCATGCCAGAGGGTGTTAATAAT 60.104 40.000 0.00 0.00 36.17 1.28
352 353 4.227300 AGTCATGCCAGAGGGTGTTAATAA 59.773 41.667 0.00 0.00 36.17 1.40
353 354 3.780294 AGTCATGCCAGAGGGTGTTAATA 59.220 43.478 0.00 0.00 36.17 0.98
354 355 2.578021 AGTCATGCCAGAGGGTGTTAAT 59.422 45.455 0.00 0.00 36.17 1.40
355 356 1.985159 AGTCATGCCAGAGGGTGTTAA 59.015 47.619 0.00 0.00 36.17 2.01
356 357 1.555075 GAGTCATGCCAGAGGGTGTTA 59.445 52.381 0.00 0.00 36.17 2.41
357 358 0.326264 GAGTCATGCCAGAGGGTGTT 59.674 55.000 0.00 0.00 36.17 3.32
358 359 1.557269 GGAGTCATGCCAGAGGGTGT 61.557 60.000 0.00 0.00 36.17 4.16
359 360 1.222936 GGAGTCATGCCAGAGGGTG 59.777 63.158 0.00 0.00 36.17 4.61
360 361 1.997874 GGGAGTCATGCCAGAGGGT 60.998 63.158 0.00 0.00 36.78 4.34
361 362 2.914289 GGGAGTCATGCCAGAGGG 59.086 66.667 0.00 0.00 36.78 4.30
362 363 2.362369 ACGGGAGTCATGCCAGAGG 61.362 63.158 0.00 0.00 40.62 3.69
363 364 1.153489 CACGGGAGTCATGCCAGAG 60.153 63.158 0.00 0.00 44.67 3.35
364 365 2.981302 CACGGGAGTCATGCCAGA 59.019 61.111 0.00 0.00 44.67 3.86
365 366 2.821366 GCACGGGAGTCATGCCAG 60.821 66.667 0.00 0.00 44.67 4.85
366 367 4.758251 CGCACGGGAGTCATGCCA 62.758 66.667 0.00 0.00 44.67 4.92
367 368 3.950794 TTCGCACGGGAGTCATGCC 62.951 63.158 0.00 0.00 44.67 4.40
368 369 1.970917 CTTTCGCACGGGAGTCATGC 61.971 60.000 0.00 3.76 44.67 4.06
369 370 0.389817 TCTTTCGCACGGGAGTCATG 60.390 55.000 0.00 0.00 44.67 3.07
370 371 0.320374 TTCTTTCGCACGGGAGTCAT 59.680 50.000 0.00 0.00 44.67 3.06
371 372 0.320374 ATTCTTTCGCACGGGAGTCA 59.680 50.000 0.00 0.00 44.67 3.41
372 373 1.393883 GAATTCTTTCGCACGGGAGTC 59.606 52.381 0.00 0.00 44.67 3.36
373 374 1.944430 GGAATTCTTTCGCACGGGAGT 60.944 52.381 5.23 0.00 36.64 3.85
374 375 0.727398 GGAATTCTTTCGCACGGGAG 59.273 55.000 5.23 0.00 32.28 4.30
375 376 0.323629 AGGAATTCTTTCGCACGGGA 59.676 50.000 5.23 0.00 32.28 5.14
376 377 1.130561 GAAGGAATTCTTTCGCACGGG 59.869 52.381 13.78 0.00 35.50 5.28
377 378 1.804151 TGAAGGAATTCTTTCGCACGG 59.196 47.619 21.25 0.00 35.05 4.94
378 379 2.412847 GGTGAAGGAATTCTTTCGCACG 60.413 50.000 32.17 0.00 42.11 5.34
379 380 2.095212 GGGTGAAGGAATTCTTTCGCAC 60.095 50.000 32.17 28.73 42.11 5.34
380 381 2.159382 GGGTGAAGGAATTCTTTCGCA 58.841 47.619 32.17 14.44 42.11 5.10
381 382 1.472878 GGGGTGAAGGAATTCTTTCGC 59.527 52.381 26.99 26.99 40.38 4.70
382 383 2.749621 CAGGGGTGAAGGAATTCTTTCG 59.250 50.000 21.25 6.15 35.05 3.46
383 384 3.767711 ACAGGGGTGAAGGAATTCTTTC 58.232 45.455 20.29 20.29 35.50 2.62
384 385 3.903530 ACAGGGGTGAAGGAATTCTTT 57.096 42.857 1.90 1.90 35.50 2.52
385 386 3.916989 ACTACAGGGGTGAAGGAATTCTT 59.083 43.478 5.23 0.00 38.65 2.52
386 387 3.532102 ACTACAGGGGTGAAGGAATTCT 58.468 45.455 5.23 0.00 0.00 2.40
387 388 5.183969 GTTACTACAGGGGTGAAGGAATTC 58.816 45.833 0.00 0.00 0.00 2.17
388 389 4.600111 TGTTACTACAGGGGTGAAGGAATT 59.400 41.667 0.00 0.00 0.00 2.17
389 390 4.172807 TGTTACTACAGGGGTGAAGGAAT 58.827 43.478 0.00 0.00 0.00 3.01
390 391 3.589641 TGTTACTACAGGGGTGAAGGAA 58.410 45.455 0.00 0.00 0.00 3.36
391 392 3.263369 TGTTACTACAGGGGTGAAGGA 57.737 47.619 0.00 0.00 0.00 3.36
392 393 4.569719 AATGTTACTACAGGGGTGAAGG 57.430 45.455 0.00 0.00 37.77 3.46
393 394 6.708285 AGTAAATGTTACTACAGGGGTGAAG 58.292 40.000 0.00 0.00 37.77 3.02
394 395 6.691255 AGTAAATGTTACTACAGGGGTGAA 57.309 37.500 0.00 0.00 37.77 3.18
395 396 6.691255 AAGTAAATGTTACTACAGGGGTGA 57.309 37.500 1.26 0.00 37.77 4.02
396 397 6.938030 TGAAAGTAAATGTTACTACAGGGGTG 59.062 38.462 1.26 0.00 37.77 4.61
397 398 7.081857 TGAAAGTAAATGTTACTACAGGGGT 57.918 36.000 1.26 0.00 37.77 4.95
398 399 7.611213 CTGAAAGTAAATGTTACTACAGGGG 57.389 40.000 17.79 4.52 37.77 4.79
416 417 6.294176 CCAAAGAAACTGGGATGTACTGAAAG 60.294 42.308 0.00 0.00 42.29 2.62
417 418 5.534654 CCAAAGAAACTGGGATGTACTGAAA 59.465 40.000 0.00 0.00 0.00 2.69
418 419 5.070001 CCAAAGAAACTGGGATGTACTGAA 58.930 41.667 0.00 0.00 0.00 3.02
419 420 4.349636 TCCAAAGAAACTGGGATGTACTGA 59.650 41.667 0.00 0.00 34.46 3.41
420 421 4.651778 TCCAAAGAAACTGGGATGTACTG 58.348 43.478 0.00 0.00 34.46 2.74
421 422 4.993705 TCCAAAGAAACTGGGATGTACT 57.006 40.909 0.00 0.00 34.46 2.73
422 423 4.825085 TGTTCCAAAGAAACTGGGATGTAC 59.175 41.667 0.00 0.00 34.46 2.90
423 424 5.055265 TGTTCCAAAGAAACTGGGATGTA 57.945 39.130 0.00 0.00 34.46 2.29
424 425 3.909732 TGTTCCAAAGAAACTGGGATGT 58.090 40.909 0.00 0.00 34.46 3.06
425 426 5.391950 CGTATGTTCCAAAGAAACTGGGATG 60.392 44.000 0.00 0.00 34.46 3.51
426 427 4.700213 CGTATGTTCCAAAGAAACTGGGAT 59.300 41.667 0.00 0.00 34.46 3.85
427 428 4.069304 CGTATGTTCCAAAGAAACTGGGA 58.931 43.478 0.00 0.00 34.46 4.37
428 429 4.069304 TCGTATGTTCCAAAGAAACTGGG 58.931 43.478 0.00 0.00 34.46 4.45
429 430 4.378459 GCTCGTATGTTCCAAAGAAACTGG 60.378 45.833 0.00 0.00 32.58 4.00
430 431 4.378459 GGCTCGTATGTTCCAAAGAAACTG 60.378 45.833 0.00 0.00 32.58 3.16
431 432 3.751698 GGCTCGTATGTTCCAAAGAAACT 59.248 43.478 0.00 0.00 32.58 2.66
432 433 3.424433 CGGCTCGTATGTTCCAAAGAAAC 60.424 47.826 0.00 0.00 32.58 2.78
433 434 2.739913 CGGCTCGTATGTTCCAAAGAAA 59.260 45.455 0.00 0.00 32.58 2.52
434 435 2.343101 CGGCTCGTATGTTCCAAAGAA 58.657 47.619 0.00 0.00 0.00 2.52
435 436 1.404986 CCGGCTCGTATGTTCCAAAGA 60.405 52.381 0.00 0.00 0.00 2.52
436 437 1.006832 CCGGCTCGTATGTTCCAAAG 58.993 55.000 0.00 0.00 0.00 2.77
437 438 0.609151 TCCGGCTCGTATGTTCCAAA 59.391 50.000 0.00 0.00 0.00 3.28
438 439 0.609151 TTCCGGCTCGTATGTTCCAA 59.391 50.000 0.00 0.00 0.00 3.53
439 440 0.609151 TTTCCGGCTCGTATGTTCCA 59.391 50.000 0.00 0.00 0.00 3.53
440 441 1.287425 CTTTCCGGCTCGTATGTTCC 58.713 55.000 0.00 0.00 0.00 3.62
441 442 0.651031 GCTTTCCGGCTCGTATGTTC 59.349 55.000 0.00 0.00 0.00 3.18
442 443 0.743345 GGCTTTCCGGCTCGTATGTT 60.743 55.000 0.00 0.00 34.85 2.71
443 444 1.153429 GGCTTTCCGGCTCGTATGT 60.153 57.895 0.00 0.00 34.85 2.29
444 445 0.532862 ATGGCTTTCCGGCTCGTATG 60.533 55.000 0.00 0.00 39.32 2.39
445 446 0.249911 GATGGCTTTCCGGCTCGTAT 60.250 55.000 0.00 0.00 39.32 3.06
446 447 1.143183 GATGGCTTTCCGGCTCGTA 59.857 57.895 0.00 0.00 39.32 3.43
447 448 2.125106 GATGGCTTTCCGGCTCGT 60.125 61.111 0.00 0.00 39.32 4.18
448 449 2.897350 GGATGGCTTTCCGGCTCG 60.897 66.667 0.00 0.00 39.32 5.03
449 450 1.821332 CTGGATGGCTTTCCGGCTC 60.821 63.158 0.00 0.00 38.74 4.70
450 451 2.273449 CTGGATGGCTTTCCGGCT 59.727 61.111 0.00 0.00 38.74 5.52
451 452 2.044946 ACTGGATGGCTTTCCGGC 60.045 61.111 13.67 0.00 44.73 6.13
452 453 1.452108 GGACTGGATGGCTTTCCGG 60.452 63.158 12.56 12.56 46.06 5.14
453 454 1.815421 CGGACTGGATGGCTTTCCG 60.815 63.158 0.00 0.00 42.98 4.30
454 455 1.452108 CCGGACTGGATGGCTTTCC 60.452 63.158 0.00 0.69 42.00 3.13
455 456 1.602237 TCCGGACTGGATGGCTTTC 59.398 57.895 0.00 0.00 43.74 2.62
456 457 3.820425 TCCGGACTGGATGGCTTT 58.180 55.556 0.00 0.00 43.74 3.51
464 465 0.815615 GCTAAAGGCATCCGGACTGG 60.816 60.000 6.12 0.00 41.35 4.00
465 466 1.154205 CGCTAAAGGCATCCGGACTG 61.154 60.000 6.12 7.97 41.91 3.51
466 467 1.144057 CGCTAAAGGCATCCGGACT 59.856 57.895 6.12 0.00 41.91 3.85
467 468 1.887707 CCGCTAAAGGCATCCGGAC 60.888 63.158 6.12 0.00 41.34 4.79
468 469 2.504032 CCGCTAAAGGCATCCGGA 59.496 61.111 6.61 6.61 41.34 5.14
476 477 0.035458 CCAGATAGGGCCGCTAAAGG 59.965 60.000 0.00 0.28 0.00 3.11
477 478 1.048601 TCCAGATAGGGCCGCTAAAG 58.951 55.000 0.00 0.00 38.24 1.85
478 479 1.140252 GTTCCAGATAGGGCCGCTAAA 59.860 52.381 0.00 0.00 38.24 1.85
479 480 0.756903 GTTCCAGATAGGGCCGCTAA 59.243 55.000 0.00 0.00 38.24 3.09
480 481 0.397957 TGTTCCAGATAGGGCCGCTA 60.398 55.000 0.00 0.00 38.24 4.26
481 482 1.271840 TTGTTCCAGATAGGGCCGCT 61.272 55.000 0.00 0.00 38.24 5.52
482 483 0.393808 TTTGTTCCAGATAGGGCCGC 60.394 55.000 0.00 0.00 38.24 6.53
483 484 1.668419 CTTTGTTCCAGATAGGGCCG 58.332 55.000 0.00 0.00 38.24 6.13
484 485 1.340991 TGCTTTGTTCCAGATAGGGCC 60.341 52.381 0.00 0.00 38.24 5.80
485 486 2.128771 TGCTTTGTTCCAGATAGGGC 57.871 50.000 0.00 0.00 38.24 5.19
486 487 3.217626 GGATGCTTTGTTCCAGATAGGG 58.782 50.000 0.00 0.00 38.24 3.53
487 488 2.874701 CGGATGCTTTGTTCCAGATAGG 59.125 50.000 0.00 0.00 39.47 2.57
488 489 2.289002 GCGGATGCTTTGTTCCAGATAG 59.711 50.000 0.00 0.00 38.39 2.08
489 490 2.288666 GCGGATGCTTTGTTCCAGATA 58.711 47.619 0.00 0.00 38.39 1.98
490 491 1.098050 GCGGATGCTTTGTTCCAGAT 58.902 50.000 0.00 0.00 38.39 2.90
491 492 2.555123 GCGGATGCTTTGTTCCAGA 58.445 52.632 0.00 0.00 38.39 3.86
502 503 2.805099 CAGAAAAGGAGATAGCGGATGC 59.195 50.000 0.00 0.00 43.24 3.91
503 504 4.065321 ACAGAAAAGGAGATAGCGGATG 57.935 45.455 0.00 0.00 0.00 3.51
504 505 5.871396 TTACAGAAAAGGAGATAGCGGAT 57.129 39.130 0.00 0.00 0.00 4.18
505 506 5.661458 CTTTACAGAAAAGGAGATAGCGGA 58.339 41.667 0.00 0.00 40.86 5.54
506 507 5.975410 CTTTACAGAAAAGGAGATAGCGG 57.025 43.478 0.00 0.00 40.86 5.52
517 518 4.941263 ACTGTGTGCTGACTTTACAGAAAA 59.059 37.500 9.39 0.00 40.80 2.29
518 519 4.513442 ACTGTGTGCTGACTTTACAGAAA 58.487 39.130 9.39 0.00 40.80 2.52
519 520 4.119862 GACTGTGTGCTGACTTTACAGAA 58.880 43.478 9.39 0.00 40.80 3.02
520 521 3.492656 GGACTGTGTGCTGACTTTACAGA 60.493 47.826 9.39 0.00 40.80 3.41
521 522 2.802816 GGACTGTGTGCTGACTTTACAG 59.197 50.000 0.00 0.00 43.20 2.74
522 523 2.169561 TGGACTGTGTGCTGACTTTACA 59.830 45.455 0.00 0.00 0.00 2.41
523 524 2.833794 TGGACTGTGTGCTGACTTTAC 58.166 47.619 0.00 0.00 0.00 2.01
524 525 3.664107 GATGGACTGTGTGCTGACTTTA 58.336 45.455 0.00 0.00 0.00 1.85
525 526 2.498167 GATGGACTGTGTGCTGACTTT 58.502 47.619 0.00 0.00 0.00 2.66
526 527 1.606480 CGATGGACTGTGTGCTGACTT 60.606 52.381 0.00 0.00 0.00 3.01
527 528 0.037882 CGATGGACTGTGTGCTGACT 60.038 55.000 0.00 0.00 0.00 3.41
528 529 0.038251 TCGATGGACTGTGTGCTGAC 60.038 55.000 0.00 0.00 0.00 3.51
529 530 0.678950 TTCGATGGACTGTGTGCTGA 59.321 50.000 0.00 0.00 0.00 4.26
530 531 1.511850 TTTCGATGGACTGTGTGCTG 58.488 50.000 0.00 0.00 0.00 4.41
531 532 2.254546 TTTTCGATGGACTGTGTGCT 57.745 45.000 0.00 0.00 0.00 4.40
532 533 3.684788 AGTATTTTCGATGGACTGTGTGC 59.315 43.478 0.00 0.00 0.00 4.57
533 534 7.064609 ACAATAGTATTTTCGATGGACTGTGTG 59.935 37.037 0.00 0.00 0.00 3.82
534 535 7.064609 CACAATAGTATTTTCGATGGACTGTGT 59.935 37.037 0.00 0.00 0.00 3.72
535 536 7.277760 TCACAATAGTATTTTCGATGGACTGTG 59.722 37.037 0.00 0.00 0.00 3.66
536 537 7.327975 TCACAATAGTATTTTCGATGGACTGT 58.672 34.615 0.00 0.00 0.00 3.55
537 538 7.517417 GCTCACAATAGTATTTTCGATGGACTG 60.517 40.741 0.00 0.00 0.00 3.51
538 539 6.480320 GCTCACAATAGTATTTTCGATGGACT 59.520 38.462 0.00 0.00 0.00 3.85
539 540 6.292919 GGCTCACAATAGTATTTTCGATGGAC 60.293 42.308 0.00 0.00 0.00 4.02
540 541 5.758296 GGCTCACAATAGTATTTTCGATGGA 59.242 40.000 0.00 0.00 0.00 3.41
541 542 5.049405 GGGCTCACAATAGTATTTTCGATGG 60.049 44.000 0.00 0.00 0.00 3.51
781 786 0.981183 TGAATGAAGTAGTGGGCGGT 59.019 50.000 0.00 0.00 0.00 5.68
937 1056 2.709934 AGATGCAGACATGGCTAGGAAT 59.290 45.455 0.00 0.00 36.35 3.01
1178 1305 3.372206 CACAGAGCCCTTTCTACAAATCG 59.628 47.826 0.00 0.00 0.00 3.34
1189 1316 2.437281 CTCATGTATCCACAGAGCCCTT 59.563 50.000 0.00 0.00 38.30 3.95
1344 1510 2.358615 ATTCCGTGCAAGCTCGCA 60.359 55.556 0.00 0.00 40.32 5.10
1369 1535 3.332385 TCCATGCCTGCTGCTCCA 61.332 61.111 0.00 0.00 42.00 3.86
1421 1589 1.153568 CGATCGTGATGTGGCCACT 60.154 57.895 34.75 21.08 32.64 4.00
1423 1591 2.186644 CCGATCGTGATGTGGCCA 59.813 61.111 15.09 0.00 0.00 5.36
1495 1703 3.968265 ACATGGCTGCACTAACCTATTT 58.032 40.909 0.50 0.00 0.00 1.40
1513 1721 6.049149 CACCACAAGGATATCTAACGAACAT 58.951 40.000 2.05 0.00 38.69 2.71
1521 1729 6.808321 AACTTAGCACCACAAGGATATCTA 57.192 37.500 2.05 0.00 38.69 1.98
1658 1903 2.540383 AGTGGTAAGTCTGATCTGCCA 58.460 47.619 0.00 0.00 0.00 4.92
1668 1913 3.629142 ATTGCAGGGTAGTGGTAAGTC 57.371 47.619 0.00 0.00 0.00 3.01
1679 1924 4.151883 ACAAGTGTGATTTATTGCAGGGT 58.848 39.130 0.00 0.00 0.00 4.34
1688 1935 7.265673 GCAGAGATAGGTACAAGTGTGATTTA 58.734 38.462 0.00 0.00 0.00 1.40
1690 1937 5.395768 GGCAGAGATAGGTACAAGTGTGATT 60.396 44.000 0.00 0.00 0.00 2.57
1691 1938 4.100189 GGCAGAGATAGGTACAAGTGTGAT 59.900 45.833 0.00 0.00 0.00 3.06
1692 1939 3.447586 GGCAGAGATAGGTACAAGTGTGA 59.552 47.826 0.00 0.00 0.00 3.58
1693 1940 3.735208 CGGCAGAGATAGGTACAAGTGTG 60.735 52.174 0.00 0.00 0.00 3.82
1694 1941 2.427453 CGGCAGAGATAGGTACAAGTGT 59.573 50.000 0.00 0.00 0.00 3.55
1735 1982 4.279145 GACAGGGGAGTAACTGAGATACA 58.721 47.826 2.71 0.00 38.09 2.29
1792 2046 3.508840 GATGCCGCCAAGGGAACG 61.509 66.667 0.00 0.00 46.01 3.95
1793 2047 3.508840 CGATGCCGCCAAGGGAAC 61.509 66.667 0.00 0.00 46.01 3.62
1794 2048 3.969250 GACGATGCCGCCAAGGGAA 62.969 63.158 0.00 0.00 46.01 3.97
1796 2050 3.976701 AAGACGATGCCGCCAAGGG 62.977 63.158 0.00 0.00 41.48 3.95
1797 2051 2.436646 AAGACGATGCCGCCAAGG 60.437 61.111 0.00 0.00 44.97 3.61
1798 2052 2.753966 CCAAGACGATGCCGCCAAG 61.754 63.158 0.00 0.00 39.95 3.61
1799 2053 2.745884 CCAAGACGATGCCGCCAA 60.746 61.111 0.00 0.00 39.95 4.52
1800 2054 3.664025 CTCCAAGACGATGCCGCCA 62.664 63.158 0.00 0.00 39.95 5.69
1801 2055 2.892425 CTCCAAGACGATGCCGCC 60.892 66.667 0.00 0.00 39.95 6.13
1802 2056 2.892425 CCTCCAAGACGATGCCGC 60.892 66.667 0.00 0.00 39.95 6.53
1803 2057 1.519455 GACCTCCAAGACGATGCCG 60.519 63.158 0.00 0.00 42.50 5.69
1804 2058 1.112113 TAGACCTCCAAGACGATGCC 58.888 55.000 0.00 0.00 0.00 4.40
1805 2059 2.288518 GGATAGACCTCCAAGACGATGC 60.289 54.545 0.00 0.00 35.24 3.91
1806 2060 2.030717 CGGATAGACCTCCAAGACGATG 60.031 54.545 0.00 0.00 34.78 3.84
1807 2061 2.158652 TCGGATAGACCTCCAAGACGAT 60.159 50.000 0.00 0.00 34.78 3.73
1808 2062 1.211212 TCGGATAGACCTCCAAGACGA 59.789 52.381 0.00 0.00 34.78 4.20
1809 2063 1.676746 TCGGATAGACCTCCAAGACG 58.323 55.000 0.00 0.00 34.78 4.18
1810 2064 5.071370 TCTAATCGGATAGACCTCCAAGAC 58.929 45.833 0.00 0.00 34.78 3.01
1811 2065 5.317808 CTCTAATCGGATAGACCTCCAAGA 58.682 45.833 0.00 0.00 34.78 3.02
1812 2066 4.461081 CCTCTAATCGGATAGACCTCCAAG 59.539 50.000 0.00 0.00 34.78 3.61
1813 2067 4.408276 CCTCTAATCGGATAGACCTCCAA 58.592 47.826 0.00 0.00 34.78 3.53
1814 2068 3.245300 CCCTCTAATCGGATAGACCTCCA 60.245 52.174 0.00 0.00 34.78 3.86
1815 2069 3.010361 TCCCTCTAATCGGATAGACCTCC 59.990 52.174 0.00 0.00 36.31 4.30
1816 2070 4.011698 GTCCCTCTAATCGGATAGACCTC 58.988 52.174 0.00 0.00 36.31 3.85
1817 2071 3.245336 GGTCCCTCTAATCGGATAGACCT 60.245 52.174 0.00 0.00 36.31 3.85
1818 2072 3.090790 GGTCCCTCTAATCGGATAGACC 58.909 54.545 0.00 0.00 0.00 3.85
1819 2073 3.090790 GGGTCCCTCTAATCGGATAGAC 58.909 54.545 0.00 0.00 0.00 2.59
1820 2074 2.290768 CGGGTCCCTCTAATCGGATAGA 60.291 54.545 6.29 0.00 0.00 1.98
1821 2075 2.093106 CGGGTCCCTCTAATCGGATAG 58.907 57.143 6.29 0.00 0.00 2.08
1822 2076 1.426598 ACGGGTCCCTCTAATCGGATA 59.573 52.381 6.29 0.00 0.00 2.59
1823 2077 0.187851 ACGGGTCCCTCTAATCGGAT 59.812 55.000 6.29 0.00 0.00 4.18
1824 2078 0.754217 CACGGGTCCCTCTAATCGGA 60.754 60.000 6.29 0.00 0.00 4.55
1825 2079 1.740285 CACGGGTCCCTCTAATCGG 59.260 63.158 6.29 0.00 0.00 4.18
1826 2080 1.740285 CCACGGGTCCCTCTAATCG 59.260 63.158 6.29 0.00 0.00 3.34
1827 2081 1.049289 AGCCACGGGTCCCTCTAATC 61.049 60.000 6.29 0.00 0.00 1.75
1828 2082 0.263765 TAGCCACGGGTCCCTCTAAT 59.736 55.000 6.29 0.00 0.00 1.73
1829 2083 0.263765 ATAGCCACGGGTCCCTCTAA 59.736 55.000 6.29 0.00 0.00 2.10
1830 2084 0.469331 CATAGCCACGGGTCCCTCTA 60.469 60.000 6.29 2.72 0.00 2.43
1831 2085 1.762460 CATAGCCACGGGTCCCTCT 60.762 63.158 6.29 0.42 0.00 3.69
1832 2086 1.749334 CTCATAGCCACGGGTCCCTC 61.749 65.000 6.29 0.00 0.00 4.30
1833 2087 1.762460 CTCATAGCCACGGGTCCCT 60.762 63.158 6.29 0.00 0.00 4.20
1834 2088 2.808206 CCTCATAGCCACGGGTCCC 61.808 68.421 0.00 0.00 0.00 4.46
1835 2089 1.122019 ATCCTCATAGCCACGGGTCC 61.122 60.000 0.00 0.00 0.00 4.46
1836 2090 0.034059 CATCCTCATAGCCACGGGTC 59.966 60.000 0.00 0.00 0.00 4.46
1837 2091 0.691078 ACATCCTCATAGCCACGGGT 60.691 55.000 0.00 0.00 0.00 5.28
1838 2092 0.250038 CACATCCTCATAGCCACGGG 60.250 60.000 0.00 0.00 0.00 5.28
1839 2093 0.465705 ACACATCCTCATAGCCACGG 59.534 55.000 0.00 0.00 0.00 4.94
1840 2094 1.134699 ACACACATCCTCATAGCCACG 60.135 52.381 0.00 0.00 0.00 4.94
1841 2095 2.679837 CAACACACATCCTCATAGCCAC 59.320 50.000 0.00 0.00 0.00 5.01
1842 2096 2.305635 ACAACACACATCCTCATAGCCA 59.694 45.455 0.00 0.00 0.00 4.75
1843 2097 2.991250 ACAACACACATCCTCATAGCC 58.009 47.619 0.00 0.00 0.00 3.93
1844 2098 4.726416 CAAACAACACACATCCTCATAGC 58.274 43.478 0.00 0.00 0.00 2.97
1845 2099 4.379813 GGCAAACAACACACATCCTCATAG 60.380 45.833 0.00 0.00 0.00 2.23
1846 2100 3.505680 GGCAAACAACACACATCCTCATA 59.494 43.478 0.00 0.00 0.00 2.15
1847 2101 2.297033 GGCAAACAACACACATCCTCAT 59.703 45.455 0.00 0.00 0.00 2.90
1848 2102 1.680735 GGCAAACAACACACATCCTCA 59.319 47.619 0.00 0.00 0.00 3.86
1849 2103 1.334960 CGGCAAACAACACACATCCTC 60.335 52.381 0.00 0.00 0.00 3.71
1850 2104 0.667993 CGGCAAACAACACACATCCT 59.332 50.000 0.00 0.00 0.00 3.24
1851 2105 0.665835 TCGGCAAACAACACACATCC 59.334 50.000 0.00 0.00 0.00 3.51
1852 2106 2.483583 TTCGGCAAACAACACACATC 57.516 45.000 0.00 0.00 0.00 3.06
1853 2107 2.481104 CCTTTCGGCAAACAACACACAT 60.481 45.455 0.00 0.00 0.00 3.21
1854 2108 1.135257 CCTTTCGGCAAACAACACACA 60.135 47.619 0.00 0.00 0.00 3.72
1855 2109 1.555477 CCTTTCGGCAAACAACACAC 58.445 50.000 0.00 0.00 0.00 3.82
1867 2121 0.802494 ATACAAACTGCGCCTTTCGG 59.198 50.000 4.18 0.00 38.94 4.30
1868 2122 1.463056 TCATACAAACTGCGCCTTTCG 59.537 47.619 4.18 0.84 42.12 3.46
1869 2123 3.764885 ATCATACAAACTGCGCCTTTC 57.235 42.857 4.18 0.00 0.00 2.62
1870 2124 4.519540 AAATCATACAAACTGCGCCTTT 57.480 36.364 4.18 0.00 0.00 3.11
1871 2125 4.519540 AAAATCATACAAACTGCGCCTT 57.480 36.364 4.18 0.00 0.00 4.35
1872 2126 4.519540 AAAAATCATACAAACTGCGCCT 57.480 36.364 4.18 0.00 0.00 5.52
1873 2127 5.804979 ACATAAAAATCATACAAACTGCGCC 59.195 36.000 4.18 0.00 0.00 6.53
1874 2128 6.869421 ACATAAAAATCATACAAACTGCGC 57.131 33.333 0.00 0.00 0.00 6.09
1875 2129 7.253288 CCGAACATAAAAATCATACAAACTGCG 60.253 37.037 0.00 0.00 0.00 5.18
1876 2130 7.540745 ACCGAACATAAAAATCATACAAACTGC 59.459 33.333 0.00 0.00 0.00 4.40
1877 2131 8.964420 ACCGAACATAAAAATCATACAAACTG 57.036 30.769 0.00 0.00 0.00 3.16
1878 2132 9.974980 AAACCGAACATAAAAATCATACAAACT 57.025 25.926 0.00 0.00 0.00 2.66
1881 2135 9.413048 GGAAAACCGAACATAAAAATCATACAA 57.587 29.630 0.00 0.00 0.00 2.41
1882 2136 8.798402 AGGAAAACCGAACATAAAAATCATACA 58.202 29.630 0.00 0.00 0.00 2.29
1883 2137 9.285770 GAGGAAAACCGAACATAAAAATCATAC 57.714 33.333 0.00 0.00 0.00 2.39
1884 2138 9.015367 TGAGGAAAACCGAACATAAAAATCATA 57.985 29.630 0.00 0.00 0.00 2.15
1885 2139 7.891561 TGAGGAAAACCGAACATAAAAATCAT 58.108 30.769 0.00 0.00 0.00 2.45
1886 2140 7.278461 TGAGGAAAACCGAACATAAAAATCA 57.722 32.000 0.00 0.00 0.00 2.57
1887 2141 9.849166 TTATGAGGAAAACCGAACATAAAAATC 57.151 29.630 0.00 0.00 30.74 2.17
1889 2143 9.685828 CTTTATGAGGAAAACCGAACATAAAAA 57.314 29.630 18.32 9.04 38.66 1.94
1890 2144 8.852135 ACTTTATGAGGAAAACCGAACATAAAA 58.148 29.630 18.32 10.43 38.66 1.52
1891 2145 8.293867 CACTTTATGAGGAAAACCGAACATAAA 58.706 33.333 17.58 17.58 37.64 1.40
1892 2146 7.094549 CCACTTTATGAGGAAAACCGAACATAA 60.095 37.037 0.00 0.00 0.00 1.90
1893 2147 6.373216 CCACTTTATGAGGAAAACCGAACATA 59.627 38.462 0.00 0.00 0.00 2.29
1894 2148 5.183140 CCACTTTATGAGGAAAACCGAACAT 59.817 40.000 0.00 0.00 0.00 2.71
1895 2149 4.517453 CCACTTTATGAGGAAAACCGAACA 59.483 41.667 0.00 0.00 0.00 3.18
1896 2150 4.758165 TCCACTTTATGAGGAAAACCGAAC 59.242 41.667 0.00 0.00 32.47 3.95
1897 2151 4.758165 GTCCACTTTATGAGGAAAACCGAA 59.242 41.667 0.00 0.00 37.18 4.30
1898 2152 4.320870 GTCCACTTTATGAGGAAAACCGA 58.679 43.478 0.00 0.00 37.18 4.69
1899 2153 3.439129 GGTCCACTTTATGAGGAAAACCG 59.561 47.826 0.00 0.00 37.18 4.44
1900 2154 4.403734 TGGTCCACTTTATGAGGAAAACC 58.596 43.478 0.00 0.00 37.18 3.27
1901 2155 5.278808 GGTTGGTCCACTTTATGAGGAAAAC 60.279 44.000 0.00 0.00 37.18 2.43
1902 2156 4.830600 GGTTGGTCCACTTTATGAGGAAAA 59.169 41.667 0.00 0.00 37.18 2.29
1903 2157 4.105697 AGGTTGGTCCACTTTATGAGGAAA 59.894 41.667 0.00 0.00 37.18 3.13
1904 2158 3.655777 AGGTTGGTCCACTTTATGAGGAA 59.344 43.478 0.00 0.00 37.18 3.36
1905 2159 3.256704 AGGTTGGTCCACTTTATGAGGA 58.743 45.455 0.00 0.00 39.02 3.71
1906 2160 3.610911 GAGGTTGGTCCACTTTATGAGG 58.389 50.000 0.00 0.00 39.02 3.86
1907 2161 3.264450 AGGAGGTTGGTCCACTTTATGAG 59.736 47.826 0.00 0.00 39.34 2.90
1908 2162 3.256704 AGGAGGTTGGTCCACTTTATGA 58.743 45.455 0.00 0.00 39.34 2.15
1909 2163 3.721087 AGGAGGTTGGTCCACTTTATG 57.279 47.619 0.00 0.00 39.34 1.90
1910 2164 3.916989 AGAAGGAGGTTGGTCCACTTTAT 59.083 43.478 0.00 0.00 39.34 1.40
1911 2165 3.323775 AGAAGGAGGTTGGTCCACTTTA 58.676 45.455 0.00 0.00 39.34 1.85
1912 2166 2.106684 GAGAAGGAGGTTGGTCCACTTT 59.893 50.000 0.00 0.00 39.34 2.66
1913 2167 1.700186 GAGAAGGAGGTTGGTCCACTT 59.300 52.381 0.00 0.00 39.34 3.16
1914 2168 1.353091 GAGAAGGAGGTTGGTCCACT 58.647 55.000 0.00 0.00 39.34 4.00
1915 2169 0.325272 GGAGAAGGAGGTTGGTCCAC 59.675 60.000 0.00 0.00 39.34 4.02
1916 2170 0.193574 AGGAGAAGGAGGTTGGTCCA 59.806 55.000 0.00 0.00 39.34 4.02
1917 2171 0.615850 CAGGAGAAGGAGGTTGGTCC 59.384 60.000 0.00 0.00 36.79 4.46
1918 2172 1.353091 ACAGGAGAAGGAGGTTGGTC 58.647 55.000 0.00 0.00 0.00 4.02
1919 2173 1.700186 GAACAGGAGAAGGAGGTTGGT 59.300 52.381 0.00 0.00 0.00 3.67
1920 2174 1.699634 TGAACAGGAGAAGGAGGTTGG 59.300 52.381 0.00 0.00 0.00 3.77
1921 2175 3.492102 TTGAACAGGAGAAGGAGGTTG 57.508 47.619 0.00 0.00 0.00 3.77
1922 2176 3.652869 TCATTGAACAGGAGAAGGAGGTT 59.347 43.478 0.00 0.00 0.00 3.50
1923 2177 3.251484 TCATTGAACAGGAGAAGGAGGT 58.749 45.455 0.00 0.00 0.00 3.85
1924 2178 3.988976 TCATTGAACAGGAGAAGGAGG 57.011 47.619 0.00 0.00 0.00 4.30
1925 2179 6.830873 AAATTCATTGAACAGGAGAAGGAG 57.169 37.500 0.15 0.00 0.00 3.69
1926 2180 6.375455 GCTAAATTCATTGAACAGGAGAAGGA 59.625 38.462 0.15 0.00 0.00 3.36
1927 2181 6.151648 TGCTAAATTCATTGAACAGGAGAAGG 59.848 38.462 0.15 0.00 0.00 3.46
1928 2182 7.094463 ACTGCTAAATTCATTGAACAGGAGAAG 60.094 37.037 22.02 14.52 0.00 2.85
1929 2183 6.716628 ACTGCTAAATTCATTGAACAGGAGAA 59.283 34.615 22.02 6.52 0.00 2.87
1930 2184 6.240894 ACTGCTAAATTCATTGAACAGGAGA 58.759 36.000 22.02 1.86 0.00 3.71
1931 2185 6.506500 ACTGCTAAATTCATTGAACAGGAG 57.493 37.500 17.23 17.23 0.00 3.69
1932 2186 7.994425 TTACTGCTAAATTCATTGAACAGGA 57.006 32.000 14.72 6.78 0.00 3.86
1933 2187 7.917505 GGATTACTGCTAAATTCATTGAACAGG 59.082 37.037 14.72 3.71 0.00 4.00
1934 2188 8.680903 AGGATTACTGCTAAATTCATTGAACAG 58.319 33.333 0.15 6.80 0.00 3.16
1935 2189 8.579850 AGGATTACTGCTAAATTCATTGAACA 57.420 30.769 0.15 0.00 0.00 3.18
1938 2192 9.679661 TGTTAGGATTACTGCTAAATTCATTGA 57.320 29.630 0.00 0.00 37.09 2.57
1942 2196 8.826710 CGAATGTTAGGATTACTGCTAAATTCA 58.173 33.333 17.74 7.35 37.09 2.57
1943 2197 8.283291 CCGAATGTTAGGATTACTGCTAAATTC 58.717 37.037 13.00 13.00 37.09 2.17
1944 2198 7.990886 TCCGAATGTTAGGATTACTGCTAAATT 59.009 33.333 0.00 0.43 37.09 1.82
1945 2199 7.506114 TCCGAATGTTAGGATTACTGCTAAAT 58.494 34.615 0.00 0.00 37.09 1.40
1946 2200 6.880484 TCCGAATGTTAGGATTACTGCTAAA 58.120 36.000 0.00 0.00 37.09 1.85
1947 2201 6.474140 TCCGAATGTTAGGATTACTGCTAA 57.526 37.500 0.00 0.00 33.42 3.09
1948 2202 6.474140 TTCCGAATGTTAGGATTACTGCTA 57.526 37.500 0.00 0.00 36.28 3.49
1949 2203 5.353394 TTCCGAATGTTAGGATTACTGCT 57.647 39.130 0.00 0.00 36.28 4.24
1950 2204 6.431198 TTTTCCGAATGTTAGGATTACTGC 57.569 37.500 0.00 0.00 36.28 4.40
1972 2226 1.067060 GCAGGTGCTTCTTCGGTTTTT 59.933 47.619 0.00 0.00 38.21 1.94
1973 2227 0.668535 GCAGGTGCTTCTTCGGTTTT 59.331 50.000 0.00 0.00 38.21 2.43
1974 2228 0.465460 TGCAGGTGCTTCTTCGGTTT 60.465 50.000 3.18 0.00 42.66 3.27
1975 2229 0.465460 TTGCAGGTGCTTCTTCGGTT 60.465 50.000 3.18 0.00 42.66 4.44
1976 2230 0.250901 ATTGCAGGTGCTTCTTCGGT 60.251 50.000 3.18 0.00 42.66 4.69
1977 2231 0.449388 GATTGCAGGTGCTTCTTCGG 59.551 55.000 3.18 0.00 42.66 4.30
1978 2232 1.396301 GAGATTGCAGGTGCTTCTTCG 59.604 52.381 3.18 0.00 42.66 3.79
1979 2233 1.396301 CGAGATTGCAGGTGCTTCTTC 59.604 52.381 3.18 0.00 42.66 2.87
1980 2234 1.446907 CGAGATTGCAGGTGCTTCTT 58.553 50.000 3.18 0.00 42.66 2.52
1981 2235 1.023513 GCGAGATTGCAGGTGCTTCT 61.024 55.000 3.18 5.70 42.66 2.85
1982 2236 1.427020 GCGAGATTGCAGGTGCTTC 59.573 57.895 3.18 0.84 42.66 3.86
2069 2327 2.435805 AGCGGATTCATGTGTAGGTCAT 59.564 45.455 0.00 0.00 0.00 3.06
2200 2459 6.113411 TGCTCTAAACAAAGCTTAGGATACC 58.887 40.000 0.00 0.00 39.31 2.73
2260 2527 2.453080 CATATGCATGCGCTCGTTTTT 58.547 42.857 14.09 0.00 39.64 1.94
2261 2528 2.109609 CATATGCATGCGCTCGTTTT 57.890 45.000 14.09 0.00 39.64 2.43
2403 2673 2.614983 TGTAGTATCACATAGCGTGCGA 59.385 45.455 0.00 0.00 45.92 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.