Multiple sequence alignment - TraesCS5A01G025900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G025900 chr5A 100.000 7183 0 0 1 7183 20999405 20992223 0.000000e+00 13265.0
1 TraesCS5A01G025900 chr5D 87.604 3372 228 98 3786 7091 32300424 32297177 0.000000e+00 3736.0
2 TraesCS5A01G025900 chr5D 93.572 1369 70 9 1717 3072 32302418 32301055 0.000000e+00 2025.0
3 TraesCS5A01G025900 chr5D 94.855 758 15 8 425 1161 32303742 32302988 0.000000e+00 1162.0
4 TraesCS5A01G025900 chr5D 95.000 620 24 3 1143 1758 32303036 32302420 0.000000e+00 966.0
5 TraesCS5A01G025900 chr5D 91.124 676 28 9 3122 3772 32301070 32300402 0.000000e+00 887.0
6 TraesCS5A01G025900 chr5D 92.523 428 19 10 2 422 32304257 32303836 1.030000e-167 601.0
7 TraesCS5A01G025900 chr5B 93.377 1374 71 9 1714 3072 24013135 24011767 0.000000e+00 2015.0
8 TraesCS5A01G025900 chr5B 86.425 1768 107 56 3794 5481 24011086 24009372 0.000000e+00 1812.0
9 TraesCS5A01G025900 chr5B 90.459 1132 53 21 5554 6657 24009357 24008253 0.000000e+00 1441.0
10 TraesCS5A01G025900 chr5B 91.679 697 28 15 425 1103 24014693 24014009 0.000000e+00 939.0
11 TraesCS5A01G025900 chr5B 90.877 570 38 8 1197 1758 24013697 24013134 0.000000e+00 752.0
12 TraesCS5A01G025900 chr5B 93.970 398 15 5 6 399 24015211 24014819 1.730000e-165 593.0
13 TraesCS5A01G025900 chr5B 86.506 541 47 15 6651 7178 24007533 24007006 8.080000e-159 571.0
14 TraesCS5A01G025900 chr5B 91.317 357 16 2 3427 3770 24011427 24011073 2.350000e-129 473.0
15 TraesCS5A01G025900 chr5B 91.456 316 18 4 3122 3430 24011782 24011469 6.660000e-115 425.0
16 TraesCS5A01G025900 chr3B 97.500 40 1 0 835 874 578635387 578635426 1.290000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G025900 chr5A 20992223 20999405 7182 True 13265.000000 13265 100.000000 1 7183 1 chr5A.!!$R1 7182
1 TraesCS5A01G025900 chr5D 32297177 32304257 7080 True 1562.833333 3736 92.446333 2 7091 6 chr5D.!!$R1 7089
2 TraesCS5A01G025900 chr5B 24007006 24015211 8205 True 1002.333333 2015 90.674000 6 7178 9 chr5B.!!$R1 7172

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 397 0.107643 GATTACCCTGGCCTCTCTGC 59.892 60.0 3.32 0.00 0.00 4.26 F
398 411 0.175760 TGGCCTCTCTGCGTCATTAC 59.824 55.0 3.32 0.00 0.00 1.89 F
1189 1366 0.185901 CCTCCCTCCCTCTCTCTCTG 59.814 65.0 0.00 0.00 0.00 3.35 F
1190 1367 0.926293 CTCCCTCCCTCTCTCTCTGT 59.074 60.0 0.00 0.00 0.00 3.41 F
2937 3372 0.739462 TTCATGACACGATCACGGCC 60.739 55.0 0.00 0.00 41.24 6.13 F
3772 4274 0.179009 ATGTGTGTGTGGCAGAGCTT 60.179 50.0 0.00 0.00 0.00 3.74 F
3773 4275 0.394216 TGTGTGTGTGGCAGAGCTTT 60.394 50.0 0.00 0.00 0.00 3.51 F
4241 4759 0.657840 CTAATCGCAGGCCTTTTCCG 59.342 55.0 0.00 3.75 0.00 4.30 F
5033 5615 1.001624 CAGCTTCATTCGCGATCACA 58.998 50.0 10.88 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 2482 1.601903 CTTAGCTTGAACGTGGCACAA 59.398 47.619 19.09 3.16 44.16 3.33 R
2275 2700 2.941480 AGACCTCATTTCCATGCATCC 58.059 47.619 0.00 0.00 0.00 3.51 R
2650 3083 1.335872 GGAGGTTTGTCGCATGGTTTG 60.336 52.381 0.00 0.00 0.00 2.93 R
3095 3530 2.019249 TCGACCGATGGATTTCGTAGT 58.981 47.619 0.00 0.00 37.42 2.73 R
3927 4438 0.542467 AACAAGCCCATGCATGACCA 60.542 50.000 28.31 0.00 38.44 4.02 R
4913 5470 0.904649 TGTGCATGCTGGTACTAGCT 59.095 50.000 28.53 13.73 44.01 3.32 R
5049 5631 1.070275 GACGAACCAAACTCCGGGT 59.930 57.895 0.00 0.00 39.65 5.28 R
5125 5707 1.135859 GTTTGTTCCTGCAGCAGATCG 60.136 52.381 24.90 7.42 32.44 3.69 R
6762 8151 1.726791 GCATATTGCGGTGGATACTCG 59.273 52.381 0.00 0.00 31.71 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 38 4.794169 ACGCCAAAAGTGAAACATGATAC 58.206 39.130 0.00 0.00 41.43 2.24
40 44 7.148755 GCCAAAAGTGAAACATGATACATGTTC 60.149 37.037 23.79 18.28 40.94 3.18
387 394 3.249119 AGGATTACCCTGGCCTCTC 57.751 57.895 3.32 0.00 45.61 3.20
388 395 0.644937 AGGATTACCCTGGCCTCTCT 59.355 55.000 3.32 0.00 45.61 3.10
389 396 0.761802 GGATTACCCTGGCCTCTCTG 59.238 60.000 3.32 0.00 0.00 3.35
390 397 0.107643 GATTACCCTGGCCTCTCTGC 59.892 60.000 3.32 0.00 0.00 4.26
391 398 1.690219 ATTACCCTGGCCTCTCTGCG 61.690 60.000 3.32 0.00 0.00 5.18
392 399 3.602075 TACCCTGGCCTCTCTGCGT 62.602 63.158 3.32 0.00 0.00 5.24
393 400 4.154347 CCCTGGCCTCTCTGCGTC 62.154 72.222 3.32 0.00 0.00 5.19
396 403 1.220206 CTGGCCTCTCTGCGTCATT 59.780 57.895 3.32 0.00 0.00 2.57
398 411 0.175760 TGGCCTCTCTGCGTCATTAC 59.824 55.000 3.32 0.00 0.00 1.89
404 417 1.899814 TCTCTGCGTCATTACCAACCT 59.100 47.619 0.00 0.00 0.00 3.50
518 633 7.217200 AGAACTTCTGTAAAATCTAGTGTGCA 58.783 34.615 0.00 0.00 0.00 4.57
721 852 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
728 859 3.309296 TCTCTCTCTCTCTCCTCTCCTC 58.691 54.545 0.00 0.00 0.00 3.71
729 860 3.051803 TCTCTCTCTCTCTCCTCTCCTCT 60.052 52.174 0.00 0.00 0.00 3.69
730 861 3.309296 TCTCTCTCTCTCCTCTCCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
897 1039 1.520342 GCTAGCCTGCAGTTCTCCG 60.520 63.158 13.81 5.70 0.00 4.63
1161 1338 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1162 1339 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1163 1340 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1164 1341 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1165 1342 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1166 1343 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
1167 1344 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
1168 1345 3.051803 TCTCTCTCTCTCTCTCTCTCCCT 60.052 52.174 0.00 0.00 0.00 4.20
1169 1346 3.309296 TCTCTCTCTCTCTCTCTCCCTC 58.691 54.545 0.00 0.00 0.00 4.30
1170 1347 2.370189 CTCTCTCTCTCTCTCTCCCTCC 59.630 59.091 0.00 0.00 0.00 4.30
1171 1348 1.421646 CTCTCTCTCTCTCTCCCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
1172 1349 1.010793 TCTCTCTCTCTCTCCCTCCCT 59.989 57.143 0.00 0.00 0.00 4.20
1173 1350 1.421646 CTCTCTCTCTCTCCCTCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
1174 1351 0.478507 CTCTCTCTCTCCCTCCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
1175 1352 0.996762 TCTCTCTCTCCCTCCCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
1176 1353 0.998945 CTCTCTCTCCCTCCCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
1177 1354 0.996762 TCTCTCTCCCTCCCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
1178 1355 2.015726 TCTCTCCCTCCCTCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
1179 1356 3.036959 TCTCCCTCCCTCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
1180 1357 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
1181 1358 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
1182 1359 3.039526 CCCTCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
1183 1360 2.612251 CCTCCCTCCCTCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
1184 1361 2.018086 CCTCCCTCCCTCCCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
1185 1362 1.541672 CTCCCTCCCTCCCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
1186 1363 0.998945 CTCCCTCCCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
1187 1364 0.996762 TCCCTCCCTCCCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1188 1365 0.998945 CCCTCCCTCCCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
1189 1366 0.185901 CCTCCCTCCCTCTCTCTCTG 59.814 65.000 0.00 0.00 0.00 3.35
1190 1367 0.926293 CTCCCTCCCTCTCTCTCTGT 59.074 60.000 0.00 0.00 0.00 3.41
1317 1684 6.645700 TCTTTATTTGCAAAATCCAATCGC 57.354 33.333 17.19 0.00 0.00 4.58
1500 1868 5.200483 TCCTTGTGGAATTTCAGTTTCAGT 58.800 37.500 0.00 0.00 39.87 3.41
1502 1870 6.831353 TCCTTGTGGAATTTCAGTTTCAGTTA 59.169 34.615 0.00 0.00 39.87 2.24
1528 1896 1.161843 ACATTTGTTTAGGCCCGTCG 58.838 50.000 0.00 0.00 0.00 5.12
1539 1911 2.461110 GCCCGTCGGTGCACTTATG 61.461 63.158 17.98 10.20 0.00 1.90
1631 2003 3.444742 TGGAGCATAAAAACCTCATGCAG 59.555 43.478 8.34 0.00 45.95 4.41
1633 2005 4.082026 GGAGCATAAAAACCTCATGCAGTT 60.082 41.667 8.34 0.00 45.95 3.16
1825 2247 5.611796 TGTTGATACATGAGTTGCAAGTC 57.388 39.130 24.59 24.59 30.03 3.01
1842 2264 8.488764 GTTGCAAGTCTAAAGTAAGTAAGTCTG 58.511 37.037 0.00 0.00 0.00 3.51
1872 2294 4.935352 TCCCTTGTTCTTCCACAATTTG 57.065 40.909 0.00 0.00 36.08 2.32
1915 2337 9.855021 TTATTGTATTTTTGGCTTCTCTTTAGC 57.145 29.630 0.00 0.00 37.91 3.09
1940 2362 6.763135 CCCTGATAAGTTATATGCATGCGTAT 59.237 38.462 29.99 29.99 33.28 3.06
1947 2369 5.757808 AGTTATATGCATGCGTATCAACACA 59.242 36.000 30.82 13.51 31.38 3.72
1956 2378 8.227119 TGCATGCGTATCAACACATTTATATAC 58.773 33.333 14.09 0.00 0.00 1.47
1959 2381 6.651643 TGCGTATCAACACATTTATATACCCC 59.348 38.462 0.00 0.00 0.00 4.95
1971 2393 8.674173 ACATTTATATACCCCAACATGGTCATA 58.326 33.333 0.00 0.00 37.31 2.15
1976 2398 3.122480 ACCCCAACATGGTCATAGATCA 58.878 45.455 0.00 0.00 35.17 2.92
1980 2402 5.135383 CCCAACATGGTCATAGATCACAAT 58.865 41.667 0.00 0.00 35.17 2.71
1987 2409 8.654094 ACATGGTCATAGATCACAATCAGATAA 58.346 33.333 0.00 0.00 34.07 1.75
2217 2642 2.631160 TGGAAGCCTTTCTCGTGAAA 57.369 45.000 11.76 11.76 39.59 2.69
2268 2693 7.279758 TCTCCTGCCTAATTTGTTTTTGTTTTG 59.720 33.333 0.00 0.00 0.00 2.44
2288 2713 6.653526 TTTGATATTCGGATGCATGGAAAT 57.346 33.333 2.46 3.09 0.00 2.17
2291 2716 5.413523 TGATATTCGGATGCATGGAAATGAG 59.586 40.000 2.46 0.00 0.00 2.90
2292 2717 1.971481 TCGGATGCATGGAAATGAGG 58.029 50.000 2.46 0.00 0.00 3.86
2293 2718 1.212688 TCGGATGCATGGAAATGAGGT 59.787 47.619 2.46 0.00 0.00 3.85
2294 2719 1.605710 CGGATGCATGGAAATGAGGTC 59.394 52.381 2.46 0.00 0.00 3.85
2295 2720 2.747467 CGGATGCATGGAAATGAGGTCT 60.747 50.000 2.46 0.00 0.00 3.85
2296 2721 3.294214 GGATGCATGGAAATGAGGTCTT 58.706 45.455 2.46 0.00 0.00 3.01
2297 2722 3.317430 GGATGCATGGAAATGAGGTCTTC 59.683 47.826 2.46 0.00 0.00 2.87
2298 2723 3.438216 TGCATGGAAATGAGGTCTTCA 57.562 42.857 0.00 0.00 40.85 3.02
2299 2724 3.084039 TGCATGGAAATGAGGTCTTCAC 58.916 45.455 0.00 0.00 38.99 3.18
2300 2725 3.084039 GCATGGAAATGAGGTCTTCACA 58.916 45.455 0.00 0.00 38.99 3.58
2579 3012 7.290014 AGTTTGGACTCATTTATTTTGGTCCTT 59.710 33.333 10.58 0.00 42.37 3.36
2617 3050 7.537596 TTTTGGTGATAACCATGAACTCAAT 57.462 32.000 1.60 0.00 39.86 2.57
2619 3052 5.569355 TGGTGATAACCATGAACTCAATGT 58.431 37.500 0.00 0.00 34.33 2.71
2631 3064 9.687210 CCATGAACTCAATGTGAATATAAATGG 57.313 33.333 0.00 0.00 0.00 3.16
2650 3083 7.671495 AAATGGACAATTGGCAACTAAATTC 57.329 32.000 14.60 0.00 37.61 2.17
2707 3140 7.114247 TGCTTAATTCGTTGAAAAATACTGCAC 59.886 33.333 0.00 0.00 0.00 4.57
2781 3215 9.310716 CTACTAGGTGGTTATGTTAGCTTTTAC 57.689 37.037 0.00 0.00 0.00 2.01
2813 3247 0.907704 TCCAGGCACCACGGATAGTT 60.908 55.000 0.00 0.00 0.00 2.24
2827 3261 5.523552 CACGGATAGTTAATGTCAAGCATGA 59.476 40.000 0.00 0.00 37.96 3.07
2927 3362 5.700832 TGGTACTTCTGTGATTTCATGACAC 59.299 40.000 7.76 7.76 35.45 3.67
2937 3372 0.739462 TTCATGACACGATCACGGCC 60.739 55.000 0.00 0.00 41.24 6.13
3019 3454 3.745975 TGTTGCTAATTCGAGTGTCAAGG 59.254 43.478 0.00 0.00 0.00 3.61
3029 3464 6.928979 TTCGAGTGTCAAGGTTTAATTTGA 57.071 33.333 0.00 0.00 0.00 2.69
3072 3507 9.643693 AGTTATTAACAAGGATTTCTTTGCATG 57.356 29.630 9.15 0.00 36.54 4.06
3073 3508 9.638239 GTTATTAACAAGGATTTCTTTGCATGA 57.362 29.630 0.00 0.00 36.54 3.07
3075 3510 8.767478 ATTAACAAGGATTTCTTTGCATGAAG 57.233 30.769 0.00 0.00 36.54 3.02
3076 3511 6.409524 AACAAGGATTTCTTTGCATGAAGA 57.590 33.333 0.00 0.00 36.54 2.87
3077 3512 6.409524 ACAAGGATTTCTTTGCATGAAGAA 57.590 33.333 9.09 9.09 42.28 2.52
3078 3513 6.453092 ACAAGGATTTCTTTGCATGAAGAAG 58.547 36.000 12.17 1.70 44.05 2.85
3079 3514 6.266103 ACAAGGATTTCTTTGCATGAAGAAGA 59.734 34.615 12.17 4.00 44.05 2.87
3080 3515 6.512342 AGGATTTCTTTGCATGAAGAAGAG 57.488 37.500 12.17 0.00 44.05 2.85
3081 3516 6.243900 AGGATTTCTTTGCATGAAGAAGAGA 58.756 36.000 12.17 2.88 44.05 3.10
3082 3517 6.374894 AGGATTTCTTTGCATGAAGAAGAGAG 59.625 38.462 12.17 0.00 44.05 3.20
3083 3518 6.373774 GGATTTCTTTGCATGAAGAAGAGAGA 59.626 38.462 12.17 0.59 44.05 3.10
3084 3519 6.798315 TTTCTTTGCATGAAGAAGAGAGAG 57.202 37.500 12.17 0.00 44.05 3.20
3085 3520 5.735285 TCTTTGCATGAAGAAGAGAGAGA 57.265 39.130 0.00 0.00 32.95 3.10
3086 3521 6.106648 TCTTTGCATGAAGAAGAGAGAGAA 57.893 37.500 0.00 0.00 32.95 2.87
3087 3522 6.528321 TCTTTGCATGAAGAAGAGAGAGAAA 58.472 36.000 0.00 0.00 32.95 2.52
3088 3523 6.994496 TCTTTGCATGAAGAAGAGAGAGAAAA 59.006 34.615 0.00 0.00 32.95 2.29
3089 3524 6.798315 TTGCATGAAGAAGAGAGAGAAAAG 57.202 37.500 0.00 0.00 0.00 2.27
3090 3525 6.106648 TGCATGAAGAAGAGAGAGAAAAGA 57.893 37.500 0.00 0.00 0.00 2.52
3091 3526 5.931146 TGCATGAAGAAGAGAGAGAAAAGAC 59.069 40.000 0.00 0.00 0.00 3.01
3092 3527 5.351189 GCATGAAGAAGAGAGAGAAAAGACC 59.649 44.000 0.00 0.00 0.00 3.85
3093 3528 6.462500 CATGAAGAAGAGAGAGAAAAGACCA 58.538 40.000 0.00 0.00 0.00 4.02
3094 3529 5.848406 TGAAGAAGAGAGAGAAAAGACCAC 58.152 41.667 0.00 0.00 0.00 4.16
3095 3530 5.363868 TGAAGAAGAGAGAGAAAAGACCACA 59.636 40.000 0.00 0.00 0.00 4.17
3096 3531 5.208463 AGAAGAGAGAGAAAAGACCACAC 57.792 43.478 0.00 0.00 0.00 3.82
3097 3532 4.898861 AGAAGAGAGAGAAAAGACCACACT 59.101 41.667 0.00 0.00 0.00 3.55
3098 3533 6.071984 AGAAGAGAGAGAAAAGACCACACTA 58.928 40.000 0.00 0.00 0.00 2.74
3099 3534 5.715434 AGAGAGAGAAAAGACCACACTAC 57.285 43.478 0.00 0.00 0.00 2.73
3100 3535 4.216687 AGAGAGAGAAAAGACCACACTACG 59.783 45.833 0.00 0.00 0.00 3.51
3101 3536 4.142790 AGAGAGAAAAGACCACACTACGA 58.857 43.478 0.00 0.00 0.00 3.43
3102 3537 4.583489 AGAGAGAAAAGACCACACTACGAA 59.417 41.667 0.00 0.00 0.00 3.85
3103 3538 5.068723 AGAGAGAAAAGACCACACTACGAAA 59.931 40.000 0.00 0.00 0.00 3.46
3104 3539 5.855045 AGAGAAAAGACCACACTACGAAAT 58.145 37.500 0.00 0.00 0.00 2.17
3105 3540 5.927115 AGAGAAAAGACCACACTACGAAATC 59.073 40.000 0.00 0.00 0.00 2.17
3106 3541 4.995487 AGAAAAGACCACACTACGAAATCC 59.005 41.667 0.00 0.00 0.00 3.01
3107 3542 4.345859 AAAGACCACACTACGAAATCCA 57.654 40.909 0.00 0.00 0.00 3.41
3108 3543 4.553330 AAGACCACACTACGAAATCCAT 57.447 40.909 0.00 0.00 0.00 3.41
3109 3544 4.124851 AGACCACACTACGAAATCCATC 57.875 45.455 0.00 0.00 0.00 3.51
3111 3546 2.201732 CCACACTACGAAATCCATCGG 58.798 52.381 1.59 0.00 46.82 4.18
3112 3547 2.418197 CCACACTACGAAATCCATCGGT 60.418 50.000 1.59 0.00 46.82 4.69
3113 3548 2.858344 CACACTACGAAATCCATCGGTC 59.142 50.000 1.59 0.00 46.82 4.79
3114 3549 2.117137 CACTACGAAATCCATCGGTCG 58.883 52.381 1.59 0.00 46.82 4.79
3115 3550 2.019249 ACTACGAAATCCATCGGTCGA 58.981 47.619 1.59 0.00 46.82 4.20
3116 3551 2.424601 ACTACGAAATCCATCGGTCGAA 59.575 45.455 0.00 0.00 46.82 3.71
3117 3552 2.373540 ACGAAATCCATCGGTCGAAA 57.626 45.000 0.00 0.00 46.82 3.46
3118 3553 2.690786 ACGAAATCCATCGGTCGAAAA 58.309 42.857 0.00 0.00 46.82 2.29
3119 3554 3.068560 ACGAAATCCATCGGTCGAAAAA 58.931 40.909 0.00 0.00 46.82 1.94
3226 3668 8.463930 TTCCACCTTATAATTAATCAGCAAGG 57.536 34.615 12.86 12.86 37.63 3.61
3257 3699 5.947228 AATGAAGAAAAGATGAACTCGCA 57.053 34.783 0.00 0.00 0.00 5.10
3346 3788 4.439057 ACATATGCTGTAGGTTTACCACG 58.561 43.478 1.58 0.00 35.91 4.94
3358 3800 4.052608 GGTTTACCACGGGAAAAACATTG 58.947 43.478 14.24 0.00 35.49 2.82
3363 3805 3.895041 ACCACGGGAAAAACATTGAAGAT 59.105 39.130 0.00 0.00 0.00 2.40
3364 3806 4.343814 ACCACGGGAAAAACATTGAAGATT 59.656 37.500 0.00 0.00 0.00 2.40
3389 3831 7.562454 TTTTTCATAATCTAGCTTTACCCGG 57.438 36.000 0.00 0.00 0.00 5.73
3516 4005 5.478679 AGTCTGTGGAGTATATATGCTGGAC 59.521 44.000 8.17 5.19 0.00 4.02
3562 4051 0.323178 AAGTGGCCTCTGCATGAAGG 60.323 55.000 8.37 2.86 40.13 3.46
3601 4090 3.512724 TCTTTTCCTTAGTGTAGGGGACG 59.487 47.826 0.00 0.00 35.90 4.79
3636 4125 9.118300 TCTCTATTGCCTTTGTACTACTACTAC 57.882 37.037 0.00 0.00 0.00 2.73
3637 4126 9.122779 CTCTATTGCCTTTGTACTACTACTACT 57.877 37.037 0.00 0.00 0.00 2.57
3669 4158 6.688073 TTATCCCCCAAAAACAATTTAGCA 57.312 33.333 0.00 0.00 0.00 3.49
3708 4210 2.819019 TGTCCATGCACTGTTTACCATG 59.181 45.455 0.00 0.00 35.90 3.66
3749 4251 1.640428 AACACACACAGTCACACTCG 58.360 50.000 0.00 0.00 0.00 4.18
3772 4274 0.179009 ATGTGTGTGTGGCAGAGCTT 60.179 50.000 0.00 0.00 0.00 3.74
3773 4275 0.394216 TGTGTGTGTGGCAGAGCTTT 60.394 50.000 0.00 0.00 0.00 3.51
3774 4276 0.740737 GTGTGTGTGGCAGAGCTTTT 59.259 50.000 0.00 0.00 0.00 2.27
3775 4277 1.134946 GTGTGTGTGGCAGAGCTTTTT 59.865 47.619 0.00 0.00 0.00 1.94
3802 4304 3.435105 TTGACATCAAGTGTGTTTGGC 57.565 42.857 0.00 0.00 42.36 4.52
3861 4363 8.185506 TCGGTCTTGTGTACCATATGTATATT 57.814 34.615 1.24 0.00 36.78 1.28
3918 4429 6.238925 GGGCCAAAATACCTACATACACAATC 60.239 42.308 4.39 0.00 0.00 2.67
3927 4438 7.195374 ACCTACATACACAATCATTGGTAGT 57.805 36.000 1.58 0.22 34.12 2.73
4121 4632 2.605366 GCGAGGCTCTGATAAAAGTCAC 59.395 50.000 13.50 0.00 0.00 3.67
4241 4759 0.657840 CTAATCGCAGGCCTTTTCCG 59.342 55.000 0.00 3.75 0.00 4.30
4245 4763 2.472909 CGCAGGCCTTTTCCGATCC 61.473 63.158 0.00 0.00 0.00 3.36
4319 4841 6.888105 TCAACATATGCTCTGGATTCTAACA 58.112 36.000 1.58 0.00 0.00 2.41
4430 4965 2.287608 GCACTGCACAAACCTACTTTCC 60.288 50.000 0.00 0.00 0.00 3.13
4469 5004 2.960688 GCACTCACCAGTCCCTCCC 61.961 68.421 0.00 0.00 0.00 4.30
4473 5008 4.394712 CACCAGTCCCTCCCGCAC 62.395 72.222 0.00 0.00 0.00 5.34
4582 5130 4.107622 GGTACATGCATGCTGTTCAAATC 58.892 43.478 26.53 2.74 0.00 2.17
4639 5187 2.490115 AGACGAGACGAGCAAGATTCTT 59.510 45.455 0.00 0.00 0.00 2.52
4641 5189 2.029828 ACGAGACGAGCAAGATTCTTGT 60.030 45.455 23.66 12.93 0.00 3.16
4650 5198 6.127703 ACGAGCAAGATTCTTGTAAGCTAGTA 60.128 38.462 23.66 0.00 35.32 1.82
4651 5199 6.416455 CGAGCAAGATTCTTGTAAGCTAGTAG 59.584 42.308 23.66 7.09 0.00 2.57
4652 5200 6.045955 AGCAAGATTCTTGTAAGCTAGTAGC 58.954 40.000 23.66 14.62 42.84 3.58
4762 5313 4.579869 ACGACTAATCAGCAAAACAGGAT 58.420 39.130 0.00 0.00 0.00 3.24
4767 5318 7.360861 CGACTAATCAGCAAAACAGGATAAACA 60.361 37.037 0.00 0.00 0.00 2.83
4768 5319 8.353423 ACTAATCAGCAAAACAGGATAAACAT 57.647 30.769 0.00 0.00 0.00 2.71
4769 5320 9.461312 ACTAATCAGCAAAACAGGATAAACATA 57.539 29.630 0.00 0.00 0.00 2.29
4830 5382 4.844349 TCTGTAGCAGGAAAAAGGCTAT 57.156 40.909 0.00 0.00 41.66 2.97
4901 5458 9.907229 TGATACTATAGTACCCATAGATCACAG 57.093 37.037 14.82 0.00 32.72 3.66
4935 5512 3.326006 AGCTAGTACCAGCATGCACATAT 59.674 43.478 21.98 3.48 44.35 1.78
4939 5516 6.477033 GCTAGTACCAGCATGCACATATATAC 59.523 42.308 21.98 11.48 41.40 1.47
4940 5517 6.358974 AGTACCAGCATGCACATATATACA 57.641 37.500 21.98 0.00 31.97 2.29
4941 5518 6.950842 AGTACCAGCATGCACATATATACAT 58.049 36.000 21.98 0.00 31.97 2.29
4942 5519 8.078060 AGTACCAGCATGCACATATATACATA 57.922 34.615 21.98 0.00 31.97 2.29
4943 5520 8.708378 AGTACCAGCATGCACATATATACATAT 58.292 33.333 21.98 0.00 31.97 1.78
4944 5521 7.797038 ACCAGCATGCACATATATACATATG 57.203 36.000 21.98 0.00 41.68 1.78
4987 5569 3.500299 CGATCGATGACATGTAGGAGAGT 59.500 47.826 10.26 0.00 0.00 3.24
5033 5615 1.001624 CAGCTTCATTCGCGATCACA 58.998 50.000 10.88 0.00 0.00 3.58
5049 5631 3.586100 TCACAGCAGCGTCTACAATAA 57.414 42.857 0.00 0.00 0.00 1.40
5125 5707 2.941891 TGATGTTCTCGTCGCAAAAC 57.058 45.000 0.00 0.00 32.69 2.43
5174 5756 2.657184 CACGTCGTAAGTGTCATCACA 58.343 47.619 0.00 0.00 46.01 3.58
5175 5757 3.047093 CACGTCGTAAGTGTCATCACAA 58.953 45.455 0.00 0.00 46.01 3.33
5204 5787 7.410120 AATCTTCCCATTTTACTTCATCCAC 57.590 36.000 0.00 0.00 0.00 4.02
5238 5825 6.447084 AGAAGTCCCTCTCATAATTTGGGTTA 59.553 38.462 0.00 0.00 38.95 2.85
5241 5828 7.652554 AGTCCCTCTCATAATTTGGGTTAAAT 58.347 34.615 0.00 0.00 40.67 1.40
5243 5830 8.758829 GTCCCTCTCATAATTTGGGTTAAATTT 58.241 33.333 0.00 0.00 44.49 1.82
5328 5915 9.478238 TGAATTCATATTCAAAAGAAGATCCCA 57.522 29.630 3.38 0.00 45.38 4.37
5408 6000 6.072112 GTCAAAACTTGAGCCAAAGTATGA 57.928 37.500 2.29 7.46 39.48 2.15
5422 6018 6.133356 CCAAAGTATGAGGGGGCTTTTAATA 58.867 40.000 0.00 0.00 0.00 0.98
5447 6043 8.530269 AAGTTGGTTTACGTATGTTTAGAGAG 57.470 34.615 0.00 0.00 0.00 3.20
5448 6044 6.589139 AGTTGGTTTACGTATGTTTAGAGAGC 59.411 38.462 0.00 0.00 0.00 4.09
5469 6071 7.859598 AGAGCTGCTCTTAATTCGATAAATTG 58.140 34.615 25.80 0.00 37.60 2.32
5504 6106 9.618890 CATGTTTCCTAGATTTTCATAAGGAGA 57.381 33.333 0.00 0.00 37.63 3.71
5528 6138 6.904463 TCATGCATGCATCCAAAATATAGT 57.096 33.333 30.07 2.66 33.90 2.12
5531 6141 9.027202 TCATGCATGCATCCAAAATATAGTTAT 57.973 29.630 30.07 1.00 33.90 1.89
5532 6142 9.083080 CATGCATGCATCCAAAATATAGTTATG 57.917 33.333 30.07 10.69 33.90 1.90
5533 6143 8.406730 TGCATGCATCCAAAATATAGTTATGA 57.593 30.769 18.46 0.00 0.00 2.15
5534 6144 9.027202 TGCATGCATCCAAAATATAGTTATGAT 57.973 29.630 18.46 0.00 0.00 2.45
5535 6145 9.512435 GCATGCATCCAAAATATAGTTATGATC 57.488 33.333 14.21 0.00 0.00 2.92
5538 6148 8.733458 TGCATCCAAAATATAGTTATGATCAGC 58.267 33.333 0.09 0.00 0.00 4.26
5539 6149 8.954350 GCATCCAAAATATAGTTATGATCAGCT 58.046 33.333 0.09 2.09 0.00 4.24
5542 6152 9.658799 TCCAAAATATAGTTATGATCAGCTAGC 57.341 33.333 6.62 6.62 0.00 3.42
5543 6153 9.664332 CCAAAATATAGTTATGATCAGCTAGCT 57.336 33.333 12.68 12.68 0.00 3.32
5547 6157 8.966069 ATATAGTTATGATCAGCTAGCTACGA 57.034 34.615 18.86 12.31 0.00 3.43
5548 6158 7.689446 ATAGTTATGATCAGCTAGCTACGAA 57.311 36.000 18.86 4.29 0.00 3.85
5549 6159 6.392625 AGTTATGATCAGCTAGCTACGAAA 57.607 37.500 18.86 5.19 0.00 3.46
5550 6160 6.210078 AGTTATGATCAGCTAGCTACGAAAC 58.790 40.000 18.86 15.87 0.00 2.78
5551 6161 4.927978 ATGATCAGCTAGCTACGAAACT 57.072 40.909 18.86 0.00 0.00 2.66
5552 6162 4.033990 TGATCAGCTAGCTACGAAACTG 57.966 45.455 18.86 3.21 0.00 3.16
5569 6179 4.685169 AACTGCATTACTGGATTGTTCG 57.315 40.909 0.00 0.00 0.00 3.95
5575 6185 5.877564 TGCATTACTGGATTGTTCGTATGAA 59.122 36.000 0.00 0.00 0.00 2.57
5588 6198 5.299028 TGTTCGTATGAATTGATGGAATGGG 59.701 40.000 0.00 0.00 36.29 4.00
5622 6232 7.288852 TGACTTGGTTTCCTCCAATATTTGAAA 59.711 33.333 0.00 0.00 44.94 2.69
5714 6329 7.284034 ACAACAGATTCATCAAGTGAGTTTCTT 59.716 33.333 0.00 0.00 38.29 2.52
5758 6373 8.851960 TTCTAATATTGTAGCACGAACTACTG 57.148 34.615 16.58 0.00 42.53 2.74
5775 6390 1.271271 ACTGCTGCTTTTCTCCTCCTG 60.271 52.381 0.00 0.00 0.00 3.86
5796 6411 8.297470 TCCTGAAGCAATTTAGCTGAAAATAT 57.703 30.769 0.00 0.00 45.89 1.28
5816 6431 9.573133 AAAATATAACTGCAAGAATAGTTGTGC 57.427 29.630 0.00 0.00 37.66 4.57
5995 6622 7.940178 CATGCATGCATTCTAACATGTTAAT 57.060 32.000 30.32 9.87 44.43 1.40
5996 6623 7.783209 CATGCATGCATTCTAACATGTTAATG 58.217 34.615 30.32 21.90 44.43 1.90
5997 6624 7.098074 TGCATGCATTCTAACATGTTAATGA 57.902 32.000 27.11 16.99 44.43 2.57
5998 6625 7.197703 TGCATGCATTCTAACATGTTAATGAG 58.802 34.615 27.11 19.20 44.43 2.90
5999 6626 7.148035 TGCATGCATTCTAACATGTTAATGAGT 60.148 33.333 27.11 16.39 44.43 3.41
6000 6627 7.703621 GCATGCATTCTAACATGTTAATGAGTT 59.296 33.333 27.11 13.93 44.43 3.01
6001 6628 9.577110 CATGCATTCTAACATGTTAATGAGTTT 57.423 29.630 27.11 12.20 39.05 2.66
6002 6629 9.793252 ATGCATTCTAACATGTTAATGAGTTTC 57.207 29.630 27.11 15.10 37.24 2.78
6003 6630 9.013229 TGCATTCTAACATGTTAATGAGTTTCT 57.987 29.630 27.11 1.68 37.24 2.52
6004 6631 9.846248 GCATTCTAACATGTTAATGAGTTTCTT 57.154 29.630 27.11 1.50 37.24 2.52
6043 6674 6.496911 AGGCAAATTACCCTAACATCAACTTT 59.503 34.615 0.00 0.00 0.00 2.66
6092 6723 5.244755 GCACATTACCCAAACATCCATTTT 58.755 37.500 0.00 0.00 0.00 1.82
6128 6759 2.169789 CGACGATGGCAAGAGGCTG 61.170 63.158 0.00 0.00 44.01 4.85
6167 6798 1.372087 CGGCTGCCAAGAAGATCCAC 61.372 60.000 20.29 0.00 0.00 4.02
6188 6819 2.666508 CGGTTTCTGTTCATAGACACGG 59.333 50.000 0.00 0.00 30.08 4.94
6300 6932 8.237811 AGTAAAGATGCAAAGGAAAAGAGAAA 57.762 30.769 0.00 0.00 0.00 2.52
6466 7109 1.012086 ACTAGCGTGCATGCAAGATG 58.988 50.000 33.42 23.28 37.31 2.90
6490 7133 7.130099 TGAATTCCCTAGAGTTCACCACTATA 58.870 38.462 2.27 0.00 42.04 1.31
6513 7156 5.450453 AGGCTGAGTTCATTAGCTAGAGTA 58.550 41.667 0.00 0.00 37.58 2.59
6514 7157 6.074648 AGGCTGAGTTCATTAGCTAGAGTAT 58.925 40.000 0.00 0.00 37.58 2.12
6516 7159 7.070571 AGGCTGAGTTCATTAGCTAGAGTATTT 59.929 37.037 0.00 0.00 37.58 1.40
6606 7261 4.647564 ATCCATATGTTCCAGGGATCAC 57.352 45.455 1.24 0.00 33.12 3.06
6640 7297 5.308014 TGAAATGTGATGTGCTGAGTTACT 58.692 37.500 0.00 0.00 0.00 2.24
6644 7301 5.405935 TGTGATGTGCTGAGTTACTGTAT 57.594 39.130 0.00 0.00 0.00 2.29
6719 8104 7.922278 ACATATGATTGAATGATTTTTGACCGG 59.078 33.333 10.38 0.00 0.00 5.28
6787 8176 0.814457 TCCACCGCAATATGCCAAAC 59.186 50.000 0.00 0.00 41.12 2.93
6805 8194 4.245660 CAAACTCACAGCGGAATCTAAGA 58.754 43.478 0.00 0.00 0.00 2.10
6813 8202 5.637810 CACAGCGGAATCTAAGAAAAGTACA 59.362 40.000 0.00 0.00 0.00 2.90
6855 8244 9.197694 CCCAGAAATATAAGACGTCTTATTCTG 57.802 37.037 38.35 38.35 44.33 3.02
6884 8275 7.134815 GCAGTTAATAATCTAATGTGCCACTG 58.865 38.462 0.00 0.00 0.00 3.66
6970 8361 6.699204 ACAAACATGATATCAAGAGCTAGTCG 59.301 38.462 14.59 0.00 0.00 4.18
7037 8428 2.344203 CGAGAGGTCAAGGCGAGGT 61.344 63.158 0.00 0.00 0.00 3.85
7044 8438 1.523758 GTCAAGGCGAGGTGAACAAT 58.476 50.000 0.00 0.00 0.00 2.71
7046 8440 1.347707 TCAAGGCGAGGTGAACAATCT 59.652 47.619 0.00 0.00 0.00 2.40
7047 8441 2.565391 TCAAGGCGAGGTGAACAATCTA 59.435 45.455 0.00 0.00 0.00 1.98
7048 8442 2.673368 CAAGGCGAGGTGAACAATCTAC 59.327 50.000 0.00 0.00 0.00 2.59
7053 8447 4.491676 GCGAGGTGAACAATCTACTGTAA 58.508 43.478 0.00 0.00 0.00 2.41
7054 8448 4.326548 GCGAGGTGAACAATCTACTGTAAC 59.673 45.833 0.00 0.00 0.00 2.50
7108 8503 6.300354 ACACCAAGATTACGAGAAAGTTTG 57.700 37.500 0.00 0.00 0.00 2.93
7111 8506 4.215399 CCAAGATTACGAGAAAGTTTGCCA 59.785 41.667 0.00 0.00 0.00 4.92
7116 8511 5.508200 TTACGAGAAAGTTTGCCAACAAT 57.492 34.783 3.22 0.00 35.21 2.71
7126 8521 1.539157 TGCCAACAATGACGCCATTA 58.461 45.000 0.00 0.00 40.81 1.90
7130 8525 2.355756 CCAACAATGACGCCATTAGGAG 59.644 50.000 0.00 0.00 40.81 3.69
7134 8529 2.874701 CAATGACGCCATTAGGAGAAGG 59.125 50.000 0.00 0.00 40.81 3.46
7135 8530 0.830648 TGACGCCATTAGGAGAAGGG 59.169 55.000 0.00 0.00 38.21 3.95
7136 8531 0.533085 GACGCCATTAGGAGAAGGGC 60.533 60.000 2.95 2.95 38.21 5.19
7137 8532 1.271840 ACGCCATTAGGAGAAGGGCA 61.272 55.000 12.83 0.00 44.82 5.36
7146 8541 1.026718 GGAGAAGGGCATGAACACGG 61.027 60.000 0.00 0.00 0.00 4.94
7152 8547 2.742372 GCATGAACACGGTCGCCT 60.742 61.111 0.00 0.00 0.00 5.52
7153 8548 3.027170 GCATGAACACGGTCGCCTG 62.027 63.158 0.00 0.00 0.00 4.85
7172 8567 2.744202 CTGCGGATTCAACCATATAGGC 59.256 50.000 0.00 0.00 43.14 3.93
7178 8573 6.276847 CGGATTCAACCATATAGGCTAGATC 58.723 44.000 0.00 0.00 43.14 2.75
7179 8574 6.127338 CGGATTCAACCATATAGGCTAGATCA 60.127 42.308 0.00 0.00 43.14 2.92
7180 8575 7.418368 CGGATTCAACCATATAGGCTAGATCAT 60.418 40.741 0.00 0.00 43.14 2.45
7181 8576 8.270744 GGATTCAACCATATAGGCTAGATCATT 58.729 37.037 0.00 0.00 43.14 2.57
7182 8577 9.107177 GATTCAACCATATAGGCTAGATCATTG 57.893 37.037 12.53 12.53 43.14 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.377445 CACTTTTGGCGTACGTTTATTGTG 59.623 41.667 17.90 14.79 0.00 3.33
34 38 2.732412 ACTCTCTGTCCGTGAACATG 57.268 50.000 0.00 0.00 0.00 3.21
40 44 3.009301 ACGTTTTACTCTCTGTCCGTG 57.991 47.619 0.00 0.00 0.00 4.94
186 190 1.434188 TGAAGTCCCTTTCTGCCTCA 58.566 50.000 0.00 0.00 0.00 3.86
288 292 0.991770 GTGTGTGCGCGCTAAACTTG 60.992 55.000 33.29 0.00 0.00 3.16
379 386 0.175760 GTAATGACGCAGAGAGGCCA 59.824 55.000 5.01 0.00 0.00 5.36
387 394 4.307432 CCTATAGGTTGGTAATGACGCAG 58.693 47.826 10.96 0.00 0.00 5.18
388 395 3.493699 GCCTATAGGTTGGTAATGACGCA 60.494 47.826 20.10 0.00 37.57 5.24
389 396 3.064931 GCCTATAGGTTGGTAATGACGC 58.935 50.000 20.10 0.00 37.57 5.19
390 397 3.070446 TGGCCTATAGGTTGGTAATGACG 59.930 47.826 20.10 0.00 37.57 4.35
391 398 4.699925 TGGCCTATAGGTTGGTAATGAC 57.300 45.455 20.10 0.00 37.57 3.06
392 399 4.972568 TCTTGGCCTATAGGTTGGTAATGA 59.027 41.667 20.10 5.70 37.57 2.57
393 400 5.304686 TCTTGGCCTATAGGTTGGTAATG 57.695 43.478 20.10 3.63 37.57 1.90
396 403 5.782677 TTTTCTTGGCCTATAGGTTGGTA 57.217 39.130 20.10 1.24 37.57 3.25
398 411 4.342092 CCATTTTCTTGGCCTATAGGTTGG 59.658 45.833 20.10 8.40 37.57 3.77
518 633 0.396974 TCACCAGCAAGCAAACCCTT 60.397 50.000 0.00 0.00 0.00 3.95
721 852 2.224992 TGCTATGGCTAGGAGAGGAGAG 60.225 54.545 1.68 0.00 39.59 3.20
728 859 6.150140 GGTTTTATTGATGCTATGGCTAGGAG 59.850 42.308 1.68 0.00 39.59 3.69
729 860 6.003950 GGTTTTATTGATGCTATGGCTAGGA 58.996 40.000 1.68 0.00 39.59 2.94
730 861 6.006449 AGGTTTTATTGATGCTATGGCTAGG 58.994 40.000 1.68 0.00 39.59 3.02
900 1042 1.068954 GCCAAGAAGAAGAAGCGTTGG 60.069 52.381 0.00 0.00 37.98 3.77
979 1121 1.873049 TCCTCCTGATTATCCCCTGGA 59.127 52.381 0.00 0.00 35.55 3.86
1161 1338 2.612251 GGAGGGAGGGAGGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
1162 1339 3.036959 GGGAGGGAGGGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
1163 1340 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
1164 1341 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
1165 1342 3.039526 AGAGGGAGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
1166 1343 2.018086 AGAGAGGGAGGGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
1167 1344 0.998945 AGAGAGAGGGAGGGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
1168 1345 0.996762 GAGAGAGAGGGAGGGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
1169 1346 0.998945 AGAGAGAGAGGGAGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
1170 1347 0.185901 CAGAGAGAGAGGGAGGGAGG 59.814 65.000 0.00 0.00 0.00 4.30
1171 1348 0.926293 ACAGAGAGAGAGGGAGGGAG 59.074 60.000 0.00 0.00 0.00 4.30
1172 1349 0.628522 CACAGAGAGAGAGGGAGGGA 59.371 60.000 0.00 0.00 0.00 4.20
1173 1350 0.628522 TCACAGAGAGAGAGGGAGGG 59.371 60.000 0.00 0.00 0.00 4.30
1174 1351 2.754012 ATCACAGAGAGAGAGGGAGG 57.246 55.000 0.00 0.00 0.00 4.30
1175 1352 6.373005 TCTATATCACAGAGAGAGAGGGAG 57.627 45.833 0.00 0.00 28.12 4.30
1176 1353 6.735229 AGATCTATATCACAGAGAGAGAGGGA 59.265 42.308 0.00 0.00 34.28 4.20
1177 1354 6.825213 CAGATCTATATCACAGAGAGAGAGGG 59.175 46.154 0.00 0.00 34.28 4.30
1178 1355 6.317140 GCAGATCTATATCACAGAGAGAGAGG 59.683 46.154 0.00 0.00 34.28 3.69
1179 1356 6.317140 GGCAGATCTATATCACAGAGAGAGAG 59.683 46.154 0.00 0.00 34.28 3.20
1180 1357 6.012596 AGGCAGATCTATATCACAGAGAGAGA 60.013 42.308 0.00 0.00 34.28 3.10
1181 1358 6.182627 AGGCAGATCTATATCACAGAGAGAG 58.817 44.000 0.00 0.00 34.28 3.20
1182 1359 6.138391 AGGCAGATCTATATCACAGAGAGA 57.862 41.667 0.00 0.00 34.28 3.10
1183 1360 7.337938 TCTAGGCAGATCTATATCACAGAGAG 58.662 42.308 0.00 0.00 34.28 3.20
1184 1361 7.264294 TCTAGGCAGATCTATATCACAGAGA 57.736 40.000 0.00 0.00 34.28 3.10
1185 1362 7.936496 TTCTAGGCAGATCTATATCACAGAG 57.064 40.000 0.00 0.00 34.28 3.35
1186 1363 8.712228 TTTTCTAGGCAGATCTATATCACAGA 57.288 34.615 0.00 0.00 34.28 3.41
1187 1364 8.801299 TCTTTTCTAGGCAGATCTATATCACAG 58.199 37.037 0.00 0.00 34.28 3.66
1188 1365 8.712228 TCTTTTCTAGGCAGATCTATATCACA 57.288 34.615 0.00 0.00 34.28 3.58
1189 1366 9.019656 TCTCTTTTCTAGGCAGATCTATATCAC 57.980 37.037 0.00 0.00 34.28 3.06
1190 1367 9.241919 CTCTCTTTTCTAGGCAGATCTATATCA 57.758 37.037 0.00 0.00 34.28 2.15
1477 1845 5.200483 ACTGAAACTGAAATTCCACAAGGA 58.800 37.500 0.00 0.00 43.93 3.36
1481 1849 9.364989 CTTTTTAACTGAAACTGAAATTCCACA 57.635 29.630 0.00 0.00 0.00 4.17
1482 1850 9.581099 TCTTTTTAACTGAAACTGAAATTCCAC 57.419 29.630 0.00 0.00 0.00 4.02
1500 1868 6.702282 CGGGCCTAAACAAATGTTCTTTTTAA 59.298 34.615 0.84 0.00 37.25 1.52
1502 1870 5.053811 CGGGCCTAAACAAATGTTCTTTTT 58.946 37.500 0.84 0.00 37.25 1.94
1539 1911 8.810652 TGGAAAACAGTTCTATAAATTGTTGC 57.189 30.769 0.34 0.00 0.00 4.17
1631 2003 5.830912 TCACATGATGAAACACAAGGAAAC 58.169 37.500 0.00 0.00 33.02 2.78
1842 2264 4.766891 TGGAAGAACAAGGGATCAATCAAC 59.233 41.667 0.00 0.00 0.00 3.18
1913 2335 4.946157 GCATGCATATAACTTATCAGGGCT 59.054 41.667 14.21 0.00 0.00 5.19
1915 2337 4.937620 ACGCATGCATATAACTTATCAGGG 59.062 41.667 19.57 0.00 0.00 4.45
1940 2362 7.286546 CCATGTTGGGGTATATAAATGTGTTGA 59.713 37.037 0.00 0.00 32.67 3.18
1947 2369 9.122954 TCTATGACCATGTTGGGGTATATAAAT 57.877 33.333 0.00 0.00 43.37 1.40
1956 2378 3.117926 TGTGATCTATGACCATGTTGGGG 60.118 47.826 0.00 0.00 43.37 4.96
1959 2381 6.764560 TCTGATTGTGATCTATGACCATGTTG 59.235 38.462 0.00 0.00 33.28 3.33
2060 2482 1.601903 CTTAGCTTGAACGTGGCACAA 59.398 47.619 19.09 3.16 44.16 3.33
2203 2628 8.234546 TGTTCTAATTAATTTCACGAGAAAGGC 58.765 33.333 13.37 0.00 46.13 4.35
2268 2693 5.163683 CCTCATTTCCATGCATCCGAATATC 60.164 44.000 0.00 0.00 0.00 1.63
2275 2700 2.941480 AGACCTCATTTCCATGCATCC 58.059 47.619 0.00 0.00 0.00 3.51
2279 2704 3.084039 TGTGAAGACCTCATTTCCATGC 58.916 45.455 0.00 0.00 36.14 4.06
2617 3050 7.415592 TGCCAATTGTCCATTTATATTCACA 57.584 32.000 4.43 0.00 0.00 3.58
2619 3052 8.076910 AGTTGCCAATTGTCCATTTATATTCA 57.923 30.769 4.43 0.00 0.00 2.57
2631 3064 6.481644 TGGTTTGAATTTAGTTGCCAATTGTC 59.518 34.615 4.43 0.00 0.00 3.18
2650 3083 1.335872 GGAGGTTTGTCGCATGGTTTG 60.336 52.381 0.00 0.00 0.00 2.93
2853 3287 8.253113 CCCATGTGAAGCTTAAATAAATGAACT 58.747 33.333 0.00 0.00 0.00 3.01
2927 3362 4.024133 TGAATGATTAATTGGCCGTGATCG 60.024 41.667 0.00 0.00 0.00 3.69
3060 3495 7.166851 TCTCTCTCTTCTTCATGCAAAGAAAT 58.833 34.615 13.21 0.00 42.93 2.17
3061 3496 6.528321 TCTCTCTCTTCTTCATGCAAAGAAA 58.472 36.000 13.21 5.69 42.93 2.52
3062 3497 6.106648 TCTCTCTCTTCTTCATGCAAAGAA 57.893 37.500 11.98 11.98 41.70 2.52
3063 3498 5.735285 TCTCTCTCTTCTTCATGCAAAGA 57.265 39.130 0.00 0.00 33.50 2.52
3064 3499 6.798315 TTTCTCTCTCTTCTTCATGCAAAG 57.202 37.500 0.00 0.00 0.00 2.77
3065 3500 6.994496 TCTTTTCTCTCTCTTCTTCATGCAAA 59.006 34.615 0.00 0.00 0.00 3.68
3066 3501 6.426328 GTCTTTTCTCTCTCTTCTTCATGCAA 59.574 38.462 0.00 0.00 0.00 4.08
3067 3502 5.931146 GTCTTTTCTCTCTCTTCTTCATGCA 59.069 40.000 0.00 0.00 0.00 3.96
3068 3503 5.351189 GGTCTTTTCTCTCTCTTCTTCATGC 59.649 44.000 0.00 0.00 0.00 4.06
3069 3504 6.368516 GTGGTCTTTTCTCTCTCTTCTTCATG 59.631 42.308 0.00 0.00 0.00 3.07
3070 3505 6.042552 TGTGGTCTTTTCTCTCTCTTCTTCAT 59.957 38.462 0.00 0.00 0.00 2.57
3071 3506 5.363868 TGTGGTCTTTTCTCTCTCTTCTTCA 59.636 40.000 0.00 0.00 0.00 3.02
3072 3507 5.694458 GTGTGGTCTTTTCTCTCTCTTCTTC 59.306 44.000 0.00 0.00 0.00 2.87
3073 3508 5.365314 AGTGTGGTCTTTTCTCTCTCTTCTT 59.635 40.000 0.00 0.00 0.00 2.52
3074 3509 4.898861 AGTGTGGTCTTTTCTCTCTCTTCT 59.101 41.667 0.00 0.00 0.00 2.85
3075 3510 5.208463 AGTGTGGTCTTTTCTCTCTCTTC 57.792 43.478 0.00 0.00 0.00 2.87
3076 3511 5.278561 CGTAGTGTGGTCTTTTCTCTCTCTT 60.279 44.000 0.00 0.00 0.00 2.85
3077 3512 4.216687 CGTAGTGTGGTCTTTTCTCTCTCT 59.783 45.833 0.00 0.00 0.00 3.10
3078 3513 4.215827 TCGTAGTGTGGTCTTTTCTCTCTC 59.784 45.833 0.00 0.00 0.00 3.20
3079 3514 4.142790 TCGTAGTGTGGTCTTTTCTCTCT 58.857 43.478 0.00 0.00 0.00 3.10
3080 3515 4.500603 TCGTAGTGTGGTCTTTTCTCTC 57.499 45.455 0.00 0.00 0.00 3.20
3081 3516 4.931661 TTCGTAGTGTGGTCTTTTCTCT 57.068 40.909 0.00 0.00 0.00 3.10
3082 3517 5.120363 GGATTTCGTAGTGTGGTCTTTTCTC 59.880 44.000 0.00 0.00 0.00 2.87
3083 3518 4.995487 GGATTTCGTAGTGTGGTCTTTTCT 59.005 41.667 0.00 0.00 0.00 2.52
3084 3519 4.753107 TGGATTTCGTAGTGTGGTCTTTTC 59.247 41.667 0.00 0.00 0.00 2.29
3085 3520 4.710324 TGGATTTCGTAGTGTGGTCTTTT 58.290 39.130 0.00 0.00 0.00 2.27
3086 3521 4.345859 TGGATTTCGTAGTGTGGTCTTT 57.654 40.909 0.00 0.00 0.00 2.52
3087 3522 4.504858 GATGGATTTCGTAGTGTGGTCTT 58.495 43.478 0.00 0.00 0.00 3.01
3088 3523 3.428999 CGATGGATTTCGTAGTGTGGTCT 60.429 47.826 0.00 0.00 34.46 3.85
3089 3524 2.858344 CGATGGATTTCGTAGTGTGGTC 59.142 50.000 0.00 0.00 34.46 4.02
3090 3525 2.418197 CCGATGGATTTCGTAGTGTGGT 60.418 50.000 0.00 0.00 37.42 4.16
3091 3526 2.201732 CCGATGGATTTCGTAGTGTGG 58.798 52.381 0.00 0.00 37.42 4.17
3092 3527 2.858344 GACCGATGGATTTCGTAGTGTG 59.142 50.000 0.00 0.00 37.42 3.82
3093 3528 2.479049 CGACCGATGGATTTCGTAGTGT 60.479 50.000 0.00 0.00 37.42 3.55
3094 3529 2.117137 CGACCGATGGATTTCGTAGTG 58.883 52.381 0.00 0.00 37.42 2.74
3095 3530 2.019249 TCGACCGATGGATTTCGTAGT 58.981 47.619 0.00 0.00 37.42 2.73
3096 3531 2.768833 TCGACCGATGGATTTCGTAG 57.231 50.000 0.00 0.00 37.42 3.51
3097 3532 3.507103 TTTCGACCGATGGATTTCGTA 57.493 42.857 0.00 0.00 37.42 3.43
3098 3533 2.373540 TTTCGACCGATGGATTTCGT 57.626 45.000 0.00 0.00 37.42 3.85
3099 3534 3.733024 TTTTTCGACCGATGGATTTCG 57.267 42.857 0.00 0.00 38.83 3.46
3118 3553 8.810041 AGTGATCTATGCAAAGAAATCCTTTTT 58.190 29.630 0.00 0.00 42.13 1.94
3119 3554 8.358582 AGTGATCTATGCAAAGAAATCCTTTT 57.641 30.769 0.00 0.00 42.13 2.27
3120 3555 7.951347 AGTGATCTATGCAAAGAAATCCTTT 57.049 32.000 0.00 0.00 45.48 3.11
3121 3556 8.897752 GTTAGTGATCTATGCAAAGAAATCCTT 58.102 33.333 0.00 0.00 36.47 3.36
3122 3557 8.049117 TGTTAGTGATCTATGCAAAGAAATCCT 58.951 33.333 0.00 0.00 0.00 3.24
3123 3558 8.213518 TGTTAGTGATCTATGCAAAGAAATCC 57.786 34.615 0.00 0.00 0.00 3.01
3172 3609 2.160721 TTACTCAGGCTCAGTAGGGG 57.839 55.000 0.00 0.00 0.00 4.79
3231 3673 7.817478 TGCGAGTTCATCTTTTCTTCATTAGTA 59.183 33.333 0.00 0.00 0.00 1.82
3287 3729 7.224949 GCTAAACTCACCCACTAATACTTCATC 59.775 40.741 0.00 0.00 0.00 2.92
3296 3738 3.828451 ACGTAGCTAAACTCACCCACTAA 59.172 43.478 0.00 0.00 0.00 2.24
3420 3864 9.280174 CTTGGGTTTATCTCACAAGTAGTTTTA 57.720 33.333 0.00 0.00 35.15 1.52
3516 4005 1.208358 CTCACATGCACGCACAAGG 59.792 57.895 0.00 0.00 0.00 3.61
3562 4051 2.687700 AGATGCATCAGACAGTGACC 57.312 50.000 27.81 0.00 38.28 4.02
3601 4090 1.133976 AGGCAATAGAGATGTGTGGGC 60.134 52.381 0.00 0.00 0.00 5.36
3636 4125 9.689501 TTGTTTTTGGGGGATAAACTAGTATAG 57.310 33.333 0.00 0.00 46.50 1.31
3638 4127 9.555411 AATTGTTTTTGGGGGATAAACTAGTAT 57.445 29.630 0.00 0.00 33.92 2.12
3708 4210 3.138304 TGTATGTTTGTGAGTGAGTGGC 58.862 45.455 0.00 0.00 0.00 5.01
3779 4281 4.629200 GCCAAACACACTTGATGTCAAAAA 59.371 37.500 0.00 0.00 40.64 1.94
3780 4282 4.180057 GCCAAACACACTTGATGTCAAAA 58.820 39.130 0.00 0.00 40.64 2.44
3781 4283 3.194329 TGCCAAACACACTTGATGTCAAA 59.806 39.130 0.00 0.00 40.64 2.69
3782 4284 2.757314 TGCCAAACACACTTGATGTCAA 59.243 40.909 0.00 0.00 40.64 3.18
3783 4285 2.358582 CTGCCAAACACACTTGATGTCA 59.641 45.455 0.00 0.00 40.64 3.58
3784 4286 2.618241 TCTGCCAAACACACTTGATGTC 59.382 45.455 0.00 0.00 40.64 3.06
3785 4287 2.620115 CTCTGCCAAACACACTTGATGT 59.380 45.455 0.00 0.00 44.81 3.06
3786 4288 2.606308 GCTCTGCCAAACACACTTGATG 60.606 50.000 0.00 0.00 0.00 3.07
3787 4289 1.610522 GCTCTGCCAAACACACTTGAT 59.389 47.619 0.00 0.00 0.00 2.57
3788 4290 1.024271 GCTCTGCCAAACACACTTGA 58.976 50.000 0.00 0.00 0.00 3.02
3789 4291 1.027357 AGCTCTGCCAAACACACTTG 58.973 50.000 0.00 0.00 0.00 3.16
3790 4292 2.638480 TAGCTCTGCCAAACACACTT 57.362 45.000 0.00 0.00 0.00 3.16
3791 4293 2.638480 TTAGCTCTGCCAAACACACT 57.362 45.000 0.00 0.00 0.00 3.55
3792 4294 3.923017 AATTAGCTCTGCCAAACACAC 57.077 42.857 0.00 0.00 0.00 3.82
3793 4295 5.945784 AGATTAATTAGCTCTGCCAAACACA 59.054 36.000 0.00 0.00 0.00 3.72
3794 4296 6.261118 CAGATTAATTAGCTCTGCCAAACAC 58.739 40.000 11.84 0.00 30.91 3.32
3795 4297 5.357878 CCAGATTAATTAGCTCTGCCAAACA 59.642 40.000 16.24 0.00 36.02 2.83
3796 4298 5.734503 GCCAGATTAATTAGCTCTGCCAAAC 60.735 44.000 16.24 5.09 36.02 2.93
3797 4299 4.339247 GCCAGATTAATTAGCTCTGCCAAA 59.661 41.667 16.24 0.00 36.02 3.28
3798 4300 3.885297 GCCAGATTAATTAGCTCTGCCAA 59.115 43.478 16.24 0.00 36.02 4.52
3799 4301 3.117926 TGCCAGATTAATTAGCTCTGCCA 60.118 43.478 16.24 11.64 36.02 4.92
3800 4302 3.251972 GTGCCAGATTAATTAGCTCTGCC 59.748 47.826 16.24 9.81 36.02 4.85
3801 4303 3.879295 TGTGCCAGATTAATTAGCTCTGC 59.121 43.478 16.24 13.28 36.02 4.26
3802 4304 4.024218 GCTGTGCCAGATTAATTAGCTCTG 60.024 45.833 15.31 15.31 36.89 3.35
3881 4392 1.863325 TTTGGCCCATGCACATACAT 58.137 45.000 0.00 0.00 40.13 2.29
3882 4393 1.637338 TTTTGGCCCATGCACATACA 58.363 45.000 0.00 0.00 40.13 2.29
3918 4429 2.359848 CCATGCATGACCACTACCAATG 59.640 50.000 28.31 2.27 0.00 2.82
3927 4438 0.542467 AACAAGCCCATGCATGACCA 60.542 50.000 28.31 0.00 38.44 4.02
4121 4632 2.276201 CATGCATGCTGGTCCAATTTG 58.724 47.619 20.33 0.00 0.00 2.32
4205 4723 5.681437 GCGATTAGATTTCAGACCAGGTGTA 60.681 44.000 0.00 0.00 0.00 2.90
4241 4759 4.158579 GGAAACCAAAGATCAAGGTGGATC 59.841 45.833 10.03 0.00 43.21 3.36
4245 4763 3.507622 GGAGGAAACCAAAGATCAAGGTG 59.492 47.826 4.75 0.00 35.42 4.00
4473 5008 0.884704 CAACGAACCTGGACCTGTGG 60.885 60.000 0.00 0.00 0.00 4.17
4639 5187 6.152154 TCACATTGTACTGCTACTAGCTTACA 59.848 38.462 14.46 14.46 42.97 2.41
4641 5189 6.769134 TCACATTGTACTGCTACTAGCTTA 57.231 37.500 9.49 0.00 42.97 3.09
4650 5198 6.117488 TGAATCATGATCACATTGTACTGCT 58.883 36.000 9.06 0.00 34.15 4.24
4651 5199 6.367686 TGAATCATGATCACATTGTACTGC 57.632 37.500 9.06 0.00 34.15 4.40
4652 5200 6.856426 GCATGAATCATGATCACATTGTACTG 59.144 38.462 25.77 12.82 43.81 2.74
4719 5267 6.579292 GTCGTTACAGCTGATGAGATATGTAC 59.421 42.308 23.35 0.07 0.00 2.90
4830 5382 1.623311 ACCTGTGCATGCACTACTGTA 59.377 47.619 41.43 24.87 46.30 2.74
4889 5442 2.567985 TGTGCATGCTGTGATCTATGG 58.432 47.619 20.33 0.00 0.00 2.74
4913 5470 0.904649 TGTGCATGCTGGTACTAGCT 59.095 50.000 28.53 13.73 44.01 3.32
4914 5471 1.959042 ATGTGCATGCTGGTACTAGC 58.041 50.000 23.17 23.17 43.95 3.42
4915 5472 7.547227 TGTATATATGTGCATGCTGGTACTAG 58.453 38.462 20.33 1.08 0.00 2.57
4918 5475 8.768019 CATATGTATATATGTGCATGCTGGTAC 58.232 37.037 20.33 9.16 40.72 3.34
4919 5476 7.933033 CCATATGTATATATGTGCATGCTGGTA 59.067 37.037 20.33 8.94 42.97 3.25
4920 5477 6.769341 CCATATGTATATATGTGCATGCTGGT 59.231 38.462 20.33 6.87 42.97 4.00
4921 5478 6.993902 TCCATATGTATATATGTGCATGCTGG 59.006 38.462 20.33 18.63 42.97 4.85
4955 5532 5.755375 ACATGTCATCGATCGAAAATTAGCT 59.245 36.000 23.50 0.00 0.00 3.32
4960 5537 5.842907 TCCTACATGTCATCGATCGAAAAT 58.157 37.500 23.50 10.32 0.00 1.82
4965 5542 3.500299 ACTCTCCTACATGTCATCGATCG 59.500 47.826 9.36 9.36 0.00 3.69
4966 5543 5.391523 GCTACTCTCCTACATGTCATCGATC 60.392 48.000 0.00 0.00 0.00 3.69
4967 5544 4.457603 GCTACTCTCCTACATGTCATCGAT 59.542 45.833 0.00 0.00 0.00 3.59
4972 5549 3.053619 TCAGGCTACTCTCCTACATGTCA 60.054 47.826 0.00 0.00 31.52 3.58
4973 5550 3.556999 TCAGGCTACTCTCCTACATGTC 58.443 50.000 0.00 0.00 31.52 3.06
5010 5592 1.660607 GATCGCGAATGAAGCTGTTCA 59.339 47.619 15.24 0.00 46.81 3.18
5011 5593 1.660607 TGATCGCGAATGAAGCTGTTC 59.339 47.619 15.24 1.92 0.00 3.18
5015 5597 1.284657 CTGTGATCGCGAATGAAGCT 58.715 50.000 15.24 0.00 0.00 3.74
5033 5615 1.470979 CGGGTTATTGTAGACGCTGCT 60.471 52.381 0.00 0.00 0.00 4.24
5049 5631 1.070275 GACGAACCAAACTCCGGGT 59.930 57.895 0.00 0.00 39.65 5.28
5125 5707 1.135859 GTTTGTTCCTGCAGCAGATCG 60.136 52.381 24.90 7.42 32.44 3.69
5187 5769 2.687935 CCGGGTGGATGAAGTAAAATGG 59.312 50.000 0.00 0.00 37.49 3.16
5324 5911 9.009675 TCTCTTCCTAAAATTATACCATTGGGA 57.990 33.333 7.78 0.00 38.05 4.37
5325 5912 9.813826 ATCTCTTCCTAAAATTATACCATTGGG 57.186 33.333 7.78 0.00 41.29 4.12
5375 5963 6.206634 TGGCTCAAGTTTTGACCATAAACTAG 59.793 38.462 0.00 0.00 43.14 2.57
5408 6000 4.413641 ACCAACTTATTAAAAGCCCCCT 57.586 40.909 0.00 0.00 0.00 4.79
5422 6018 7.117379 GCTCTCTAAACATACGTAAACCAACTT 59.883 37.037 0.00 0.00 0.00 2.66
5445 6041 6.576684 GCAATTTATCGAATTAAGAGCAGCTC 59.423 38.462 15.25 15.25 35.79 4.09
5446 6042 6.038603 TGCAATTTATCGAATTAAGAGCAGCT 59.961 34.615 0.00 0.00 35.79 4.24
5447 6043 6.201517 TGCAATTTATCGAATTAAGAGCAGC 58.798 36.000 0.00 0.00 35.79 5.25
5448 6044 7.149015 GCATGCAATTTATCGAATTAAGAGCAG 60.149 37.037 14.21 0.00 36.77 4.24
5504 6106 7.476540 ACTATATTTTGGATGCATGCATGAT 57.523 32.000 36.73 21.73 36.70 2.45
5528 6138 6.209361 CAGTTTCGTAGCTAGCTGATCATAA 58.791 40.000 27.68 10.53 0.00 1.90
5531 6141 3.735208 GCAGTTTCGTAGCTAGCTGATCA 60.735 47.826 27.68 3.83 0.00 2.92
5532 6142 2.792116 GCAGTTTCGTAGCTAGCTGATC 59.208 50.000 27.68 15.45 0.00 2.92
5533 6143 2.166459 TGCAGTTTCGTAGCTAGCTGAT 59.834 45.455 27.68 3.54 0.00 2.90
5534 6144 1.544246 TGCAGTTTCGTAGCTAGCTGA 59.456 47.619 27.68 14.07 0.00 4.26
5535 6145 1.996292 TGCAGTTTCGTAGCTAGCTG 58.004 50.000 27.68 11.72 0.00 4.24
5536 6146 2.969628 ATGCAGTTTCGTAGCTAGCT 57.030 45.000 23.12 23.12 0.00 3.32
5537 6147 4.026475 CAGTAATGCAGTTTCGTAGCTAGC 60.026 45.833 6.62 6.62 0.00 3.42
5538 6148 4.504461 CCAGTAATGCAGTTTCGTAGCTAG 59.496 45.833 0.00 0.00 0.00 3.42
5539 6149 4.158949 TCCAGTAATGCAGTTTCGTAGCTA 59.841 41.667 0.00 0.00 0.00 3.32
5540 6150 3.056107 TCCAGTAATGCAGTTTCGTAGCT 60.056 43.478 0.00 0.00 0.00 3.32
5541 6151 3.259064 TCCAGTAATGCAGTTTCGTAGC 58.741 45.455 0.00 0.00 0.00 3.58
5542 6152 5.351465 ACAATCCAGTAATGCAGTTTCGTAG 59.649 40.000 0.00 0.00 0.00 3.51
5543 6153 5.242434 ACAATCCAGTAATGCAGTTTCGTA 58.758 37.500 0.00 0.00 0.00 3.43
5544 6154 4.072131 ACAATCCAGTAATGCAGTTTCGT 58.928 39.130 0.00 0.00 0.00 3.85
5545 6155 4.685169 ACAATCCAGTAATGCAGTTTCG 57.315 40.909 0.00 0.00 0.00 3.46
5546 6156 5.088739 CGAACAATCCAGTAATGCAGTTTC 58.911 41.667 0.00 0.00 0.00 2.78
5547 6157 4.518970 ACGAACAATCCAGTAATGCAGTTT 59.481 37.500 0.00 0.00 0.00 2.66
5548 6158 4.072131 ACGAACAATCCAGTAATGCAGTT 58.928 39.130 0.00 0.00 0.00 3.16
5549 6159 3.674997 ACGAACAATCCAGTAATGCAGT 58.325 40.909 0.00 0.00 0.00 4.40
5550 6160 5.523552 TCATACGAACAATCCAGTAATGCAG 59.476 40.000 0.00 0.00 0.00 4.41
5551 6161 5.423886 TCATACGAACAATCCAGTAATGCA 58.576 37.500 0.00 0.00 0.00 3.96
5552 6162 5.984233 TCATACGAACAATCCAGTAATGC 57.016 39.130 0.00 0.00 0.00 3.56
5569 6179 7.177878 ACCTATCCCATTCCATCAATTCATAC 58.822 38.462 0.00 0.00 0.00 2.39
5575 6185 5.835280 GTCAAACCTATCCCATTCCATCAAT 59.165 40.000 0.00 0.00 0.00 2.57
5588 6198 4.700692 GGAGGAAACCAAGTCAAACCTATC 59.299 45.833 0.00 0.00 0.00 2.08
5737 6352 5.968387 GCAGTAGTTCGTGCTACAATATT 57.032 39.130 16.78 0.00 42.68 1.28
5747 6362 2.802816 AGAAAAGCAGCAGTAGTTCGTG 59.197 45.455 0.00 0.00 0.00 4.35
5750 6365 3.669536 AGGAGAAAAGCAGCAGTAGTTC 58.330 45.455 0.00 0.00 0.00 3.01
5758 6373 2.083002 CTTCAGGAGGAGAAAAGCAGC 58.917 52.381 0.00 0.00 0.00 5.25
5796 6411 5.063204 AGTGCACAACTATTCTTGCAGTTA 58.937 37.500 21.04 0.00 44.41 2.24
5974 6601 7.198390 ACTCATTAACATGTTAGAATGCATGC 58.802 34.615 21.61 11.82 44.43 4.06
5976 6603 9.793252 GAAACTCATTAACATGTTAGAATGCAT 57.207 29.630 21.61 13.10 0.00 3.96
5977 6604 9.013229 AGAAACTCATTAACATGTTAGAATGCA 57.987 29.630 21.61 13.38 0.00 3.96
5978 6605 9.846248 AAGAAACTCATTAACATGTTAGAATGC 57.154 29.630 21.61 11.97 0.00 3.56
5987 6614 9.918630 AATGGAGAAAAGAAACTCATTAACATG 57.081 29.630 0.00 0.00 35.17 3.21
5990 6617 8.797438 AGGAATGGAGAAAAGAAACTCATTAAC 58.203 33.333 0.00 0.00 35.17 2.01
5992 6619 8.163408 TGAGGAATGGAGAAAAGAAACTCATTA 58.837 33.333 0.00 0.00 35.17 1.90
5993 6620 7.006509 TGAGGAATGGAGAAAAGAAACTCATT 58.993 34.615 0.00 0.00 35.17 2.57
5994 6621 6.546484 TGAGGAATGGAGAAAAGAAACTCAT 58.454 36.000 0.00 0.00 35.17 2.90
5995 6622 5.940617 TGAGGAATGGAGAAAAGAAACTCA 58.059 37.500 0.00 0.00 35.17 3.41
5996 6623 5.414144 CCTGAGGAATGGAGAAAAGAAACTC 59.586 44.000 0.00 0.00 0.00 3.01
5997 6624 5.320277 CCTGAGGAATGGAGAAAAGAAACT 58.680 41.667 0.00 0.00 0.00 2.66
5998 6625 4.082517 GCCTGAGGAATGGAGAAAAGAAAC 60.083 45.833 0.65 0.00 0.00 2.78
5999 6626 4.082125 GCCTGAGGAATGGAGAAAAGAAA 58.918 43.478 0.65 0.00 0.00 2.52
6000 6627 3.074390 TGCCTGAGGAATGGAGAAAAGAA 59.926 43.478 0.65 0.00 0.00 2.52
6001 6628 2.644299 TGCCTGAGGAATGGAGAAAAGA 59.356 45.455 0.65 0.00 0.00 2.52
6002 6629 3.077484 TGCCTGAGGAATGGAGAAAAG 57.923 47.619 0.65 0.00 0.00 2.27
6003 6630 3.524095 TTGCCTGAGGAATGGAGAAAA 57.476 42.857 0.65 0.00 0.00 2.29
6004 6631 3.524095 TTTGCCTGAGGAATGGAGAAA 57.476 42.857 0.65 0.00 0.00 2.52
6005 6632 3.744940 ATTTGCCTGAGGAATGGAGAA 57.255 42.857 0.65 0.00 0.00 2.87
6006 6633 3.744940 AATTTGCCTGAGGAATGGAGA 57.255 42.857 0.65 0.00 0.00 3.71
6007 6634 3.633986 GGTAATTTGCCTGAGGAATGGAG 59.366 47.826 0.65 0.00 0.00 3.86
6008 6635 3.627237 GGGTAATTTGCCTGAGGAATGGA 60.627 47.826 0.65 0.00 0.00 3.41
6009 6636 2.695147 GGGTAATTTGCCTGAGGAATGG 59.305 50.000 0.65 0.00 0.00 3.16
6043 6674 6.331845 CACTGCCAAAGAAAATGTATATGCA 58.668 36.000 0.00 0.00 0.00 3.96
6115 6746 4.809496 CGGCCAGCCTCTTGCCAT 62.809 66.667 2.24 0.00 41.66 4.40
6167 6798 2.666508 CCGTGTCTATGAACAGAAACCG 59.333 50.000 0.00 0.00 30.11 4.44
6188 6819 2.671963 GTTTGGACTCCCCACCGC 60.672 66.667 0.00 0.00 46.62 5.68
6193 6824 2.358322 TCTTGTTGTTTGGACTCCCC 57.642 50.000 0.00 0.00 0.00 4.81
6236 6867 9.366513 GTACGTATACACATATGCGATATACTG 57.633 37.037 19.38 16.46 46.34 2.74
6300 6932 5.997746 TGTATAAGGTAAGGTACGTAGCGAT 59.002 40.000 18.31 13.87 44.86 4.58
6413 7052 5.108385 ACCTTGAATTGCGAGTACAAAAG 57.892 39.130 0.00 0.00 32.27 2.27
6466 7109 4.828072 AGTGGTGAACTCTAGGGAATTC 57.172 45.455 0.00 0.00 31.64 2.17
6490 7133 4.285863 ACTCTAGCTAATGAACTCAGCCT 58.714 43.478 0.00 0.00 35.88 4.58
6514 7157 9.874205 AAATGAACAAGATTGAGAACTTGAAAA 57.126 25.926 12.69 0.19 43.98 2.29
6516 7159 8.137437 GGAAATGAACAAGATTGAGAACTTGAA 58.863 33.333 12.69 0.76 43.98 2.69
6535 7178 7.448161 TCTTTGAAATGCAGTAAGAGGAAATGA 59.552 33.333 0.00 0.00 0.00 2.57
6582 7229 6.332635 AGTGATCCCTGGAACATATGGATTTA 59.667 38.462 7.80 0.00 39.90 1.40
6697 8081 6.284891 ACCGGTCAAAAATCATTCAATCAT 57.715 33.333 0.00 0.00 0.00 2.45
6703 8087 2.159435 CCCGACCGGTCAAAAATCATTC 60.159 50.000 32.80 3.31 0.00 2.67
6708 8092 2.793288 ATACCCGACCGGTCAAAAAT 57.207 45.000 32.80 17.76 43.58 1.82
6719 8104 6.513180 TCTCATTTCTCATGTAATACCCGAC 58.487 40.000 0.00 0.00 0.00 4.79
6762 8151 1.726791 GCATATTGCGGTGGATACTCG 59.273 52.381 0.00 0.00 31.71 4.18
6787 8176 4.932200 ACTTTTCTTAGATTCCGCTGTGAG 59.068 41.667 0.00 0.00 0.00 3.51
6820 8209 4.415512 TCTTATATTTCTGGGTGGAAGGGG 59.584 45.833 0.00 0.00 0.00 4.79
6824 8213 5.424252 AGACGTCTTATATTTCTGGGTGGAA 59.576 40.000 13.58 0.00 0.00 3.53
6825 8214 4.960469 AGACGTCTTATATTTCTGGGTGGA 59.040 41.667 13.58 0.00 0.00 4.02
6826 8215 5.277857 AGACGTCTTATATTTCTGGGTGG 57.722 43.478 13.58 0.00 0.00 4.61
6827 8216 8.888579 AATAAGACGTCTTATATTTCTGGGTG 57.111 34.615 38.01 0.00 45.55 4.61
6828 8217 8.925338 AGAATAAGACGTCTTATATTTCTGGGT 58.075 33.333 38.01 24.83 45.55 4.51
6829 8218 9.197694 CAGAATAAGACGTCTTATATTTCTGGG 57.802 37.037 38.09 27.65 45.55 4.45
6830 8219 8.704234 GCAGAATAAGACGTCTTATATTTCTGG 58.296 37.037 40.95 32.46 45.55 3.86
6831 8220 9.249457 TGCAGAATAAGACGTCTTATATTTCTG 57.751 33.333 39.41 39.41 45.55 3.02
6855 8244 6.583806 GGCACATTAGATTATTAACTGCATGC 59.416 38.462 11.82 11.82 0.00 4.06
6931 8322 7.956328 ATCATGTTTGTGTAGAGACTAGGTA 57.044 36.000 0.00 0.00 0.00 3.08
6970 8361 2.610433 TGTGTGCATCTTCGATGTCTC 58.390 47.619 5.81 1.34 0.00 3.36
7007 8398 3.288964 TGACCTCTCGATAGGACCTTTC 58.711 50.000 22.62 10.09 39.15 2.62
7047 8441 9.738832 GTGGTAAATGTTATGTTTTGTTACAGT 57.261 29.630 0.00 0.00 0.00 3.55
7048 8442 9.187455 GGTGGTAAATGTTATGTTTTGTTACAG 57.813 33.333 0.00 0.00 0.00 2.74
7053 8447 5.224135 GCGGTGGTAAATGTTATGTTTTGT 58.776 37.500 0.00 0.00 0.00 2.83
7054 8448 4.623595 GGCGGTGGTAAATGTTATGTTTTG 59.376 41.667 0.00 0.00 0.00 2.44
7094 8489 4.966965 TTGTTGGCAAACTTTCTCGTAA 57.033 36.364 0.00 0.00 37.19 3.18
7097 8492 3.730715 GTCATTGTTGGCAAACTTTCTCG 59.269 43.478 0.00 0.00 38.21 4.04
7108 8503 1.202290 CCTAATGGCGTCATTGTTGGC 60.202 52.381 24.97 0.00 42.93 4.52
7111 8506 3.627395 TCTCCTAATGGCGTCATTGTT 57.373 42.857 24.97 2.14 42.93 2.83
7116 8511 0.830648 CCCTTCTCCTAATGGCGTCA 59.169 55.000 0.00 0.00 0.00 4.35
7126 8521 0.036010 CGTGTTCATGCCCTTCTCCT 60.036 55.000 0.00 0.00 0.00 3.69
7130 8525 1.635663 CGACCGTGTTCATGCCCTTC 61.636 60.000 0.00 0.00 0.00 3.46
7134 8529 3.799755 GGCGACCGTGTTCATGCC 61.800 66.667 0.00 0.00 35.04 4.40
7135 8530 2.742372 AGGCGACCGTGTTCATGC 60.742 61.111 0.00 0.00 0.00 4.06
7136 8531 3.027170 GCAGGCGACCGTGTTCATG 62.027 63.158 0.00 0.00 0.00 3.07
7137 8532 2.742372 GCAGGCGACCGTGTTCAT 60.742 61.111 0.00 0.00 0.00 2.57
7152 8547 2.371841 AGCCTATATGGTTGAATCCGCA 59.628 45.455 0.00 0.00 38.35 5.69
7153 8548 3.059352 AGCCTATATGGTTGAATCCGC 57.941 47.619 0.00 0.00 38.35 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.