Multiple sequence alignment - TraesCS5A01G025200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G025200 chr5A 100.000 3491 0 0 932 4422 19666408 19669898 0.000000e+00 6447.0
1 TraesCS5A01G025200 chr5A 100.000 466 0 0 1 466 19665477 19665942 0.000000e+00 861.0
2 TraesCS5A01G025200 chr5A 77.589 705 86 41 2918 3598 19912838 19913494 1.170000e-95 361.0
3 TraesCS5A01G025200 chr5A 97.159 176 4 1 3592 3766 394156742 394156917 3.340000e-76 296.0
4 TraesCS5A01G025200 chr5A 81.639 305 42 8 2292 2582 19911691 19911995 1.590000e-59 241.0
5 TraesCS5A01G025200 chr5A 84.021 194 22 7 1169 1359 19679990 19680177 1.260000e-40 178.0
6 TraesCS5A01G025200 chr5A 83.333 192 17 12 1180 1359 19910921 19911109 3.540000e-36 163.0
7 TraesCS5A01G025200 chr5D 93.265 1173 49 17 1974 3124 28939401 28940565 0.000000e+00 1701.0
8 TraesCS5A01G025200 chr5D 87.585 1031 71 30 932 1943 28938416 28939408 0.000000e+00 1142.0
9 TraesCS5A01G025200 chr5D 90.782 499 22 2 3123 3598 28940602 28941099 0.000000e+00 645.0
10 TraesCS5A01G025200 chr5D 86.111 576 45 22 3758 4301 28941097 28941669 4.930000e-164 588.0
11 TraesCS5A01G025200 chr5D 83.462 260 37 2 2299 2552 29133175 29133434 2.060000e-58 237.0
12 TraesCS5A01G025200 chr5D 85.784 204 29 0 2299 2502 28947668 28947871 2.680000e-52 217.0
13 TraesCS5A01G025200 chr5D 90.845 142 4 4 283 419 28937917 28938054 9.770000e-42 182.0
14 TraesCS5A01G025200 chr5D 85.621 153 8 7 4115 4267 28941405 28941543 9.910000e-32 148.0
15 TraesCS5A01G025200 chr5D 83.333 138 17 3 1773 1907 29132669 29132803 6.010000e-24 122.0
16 TraesCS5A01G025200 chr5D 96.774 62 1 1 4116 4177 28941577 28941637 7.820000e-18 102.0
17 TraesCS5A01G025200 chr5D 89.041 73 8 0 3198 3270 28948543 28948615 1.690000e-14 91.6
18 TraesCS5A01G025200 chr5B 92.757 1146 51 11 1989 3122 21412056 21413181 0.000000e+00 1628.0
19 TraesCS5A01G025200 chr5B 83.154 837 75 35 932 1717 21411024 21411845 0.000000e+00 704.0
20 TraesCS5A01G025200 chr5B 89.592 490 24 3 3135 3598 21413223 21413711 8.190000e-167 597.0
21 TraesCS5A01G025200 chr5B 87.179 312 18 9 4115 4422 21414064 21414357 7.090000e-88 335.0
22 TraesCS5A01G025200 chr5B 89.961 259 19 5 3758 4010 21413709 21413966 1.190000e-85 327.0
23 TraesCS5A01G025200 chr5B 92.353 170 10 3 1745 1911 21411846 21412015 5.720000e-59 239.0
24 TraesCS5A01G025200 chr5B 82.836 268 36 5 2299 2557 21525543 21525809 9.570000e-57 231.0
25 TraesCS5A01G025200 chr5B 90.476 63 5 1 3993 4055 21413977 21414038 1.020000e-11 82.4
26 TraesCS5A01G025200 chr5B 83.529 85 11 2 3952 4034 21414194 21414277 4.740000e-10 76.8
27 TraesCS5A01G025200 chr4A 98.246 171 3 0 3595 3765 464113015 464112845 2.590000e-77 300.0
28 TraesCS5A01G025200 chr3A 97.701 174 4 0 3591 3764 370245888 370246061 2.590000e-77 300.0
29 TraesCS5A01G025200 chr3A 94.652 187 10 0 3573 3759 74230812 74230998 1.560000e-74 291.0
30 TraesCS5A01G025200 chr6B 96.629 178 6 0 3587 3764 392486070 392485893 3.340000e-76 296.0
31 TraesCS5A01G025200 chr6B 95.628 183 6 2 3595 3776 114057200 114057019 4.330000e-75 292.0
32 TraesCS5A01G025200 chr6A 97.143 175 4 1 3592 3765 560082765 560082591 1.200000e-75 294.0
33 TraesCS5A01G025200 chr2B 96.133 181 3 4 3595 3773 154503711 154503533 4.330000e-75 292.0
34 TraesCS5A01G025200 chr4D 92.386 197 11 4 3571 3765 10770714 10770520 1.210000e-70 278.0
35 TraesCS5A01G025200 chr7B 80.328 122 13 5 1162 1277 128072388 128072272 1.020000e-11 82.4
36 TraesCS5A01G025200 chr7B 79.339 121 14 6 1163 1277 127654628 127654513 1.710000e-09 75.0
37 TraesCS5A01G025200 chr3B 80.000 100 16 3 142 241 80655442 80655537 2.210000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G025200 chr5A 19665477 19669898 4421 False 3654.00 6447 100.000000 1 4422 2 chr5A.!!$F3 4421
1 TraesCS5A01G025200 chr5A 19910921 19913494 2573 False 255.00 361 80.853667 1180 3598 3 chr5A.!!$F4 2418
2 TraesCS5A01G025200 chr5D 28937917 28941669 3752 False 644.00 1701 90.140429 283 4301 7 chr5D.!!$F1 4018
3 TraesCS5A01G025200 chr5B 21411024 21414357 3333 False 498.65 1628 88.625125 932 4422 8 chr5B.!!$F2 3490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 470 0.037790 GAGTGAGTGGGTGAGAGTGC 60.038 60.0 0.00 0.0 0.00 4.40 F
1371 1445 0.035176 GGTACGCTTACCAACCACCA 59.965 55.0 14.26 0.0 46.59 4.17 F
1374 1448 0.816421 ACGCTTACCAACCACCACAC 60.816 55.0 0.00 0.0 0.00 3.82 F
3186 4020 0.607489 ACAGTGACCAGCAATGAGCC 60.607 55.0 0.00 0.0 45.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2312 2452 0.033504 CCACGACTAGTTGTGCCAGT 59.966 55.0 30.55 6.58 42.30 4.00 R
2951 3729 0.389817 TTCGACATCCCGTGCTTCTG 60.390 55.0 0.00 0.00 0.00 3.02 R
3286 4120 1.332195 TCGATCATCTGCCGGAGATT 58.668 50.0 5.05 0.00 39.64 2.40 R
4089 5002 5.463724 ACGAAAGCAAGAAGTTAGAGAAGTG 59.536 40.0 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.957266 GGCAACACCTTTTACGGC 57.043 55.556 0.00 0.00 34.51 5.68
24 25 1.081708 GGCAACACCTTTTACGGCG 60.082 57.895 4.80 4.80 34.51 6.46
25 26 1.650363 GCAACACCTTTTACGGCGT 59.350 52.632 19.64 19.64 0.00 5.68
26 27 0.385098 GCAACACCTTTTACGGCGTC 60.385 55.000 19.21 0.00 0.00 5.19
27 28 1.223187 CAACACCTTTTACGGCGTCT 58.777 50.000 19.21 0.00 0.00 4.18
28 29 1.193874 CAACACCTTTTACGGCGTCTC 59.806 52.381 19.21 0.00 0.00 3.36
29 30 0.390124 ACACCTTTTACGGCGTCTCA 59.610 50.000 19.21 0.00 0.00 3.27
30 31 0.788391 CACCTTTTACGGCGTCTCAC 59.212 55.000 19.21 0.00 0.00 3.51
31 32 0.677842 ACCTTTTACGGCGTCTCACT 59.322 50.000 19.21 0.00 0.00 3.41
32 33 1.336609 ACCTTTTACGGCGTCTCACTC 60.337 52.381 19.21 0.00 0.00 3.51
33 34 1.336517 CCTTTTACGGCGTCTCACTCA 60.337 52.381 19.21 0.00 0.00 3.41
34 35 2.400399 CTTTTACGGCGTCTCACTCAA 58.600 47.619 19.21 0.00 0.00 3.02
35 36 2.512485 TTTACGGCGTCTCACTCAAA 57.488 45.000 19.21 6.82 0.00 2.69
36 37 2.736144 TTACGGCGTCTCACTCAAAT 57.264 45.000 19.21 0.00 0.00 2.32
37 38 3.853831 TTACGGCGTCTCACTCAAATA 57.146 42.857 19.21 0.00 0.00 1.40
38 39 2.736144 ACGGCGTCTCACTCAAATAA 57.264 45.000 6.77 0.00 0.00 1.40
39 40 2.607187 ACGGCGTCTCACTCAAATAAG 58.393 47.619 6.77 0.00 0.00 1.73
40 41 1.927174 CGGCGTCTCACTCAAATAAGG 59.073 52.381 0.00 0.00 0.00 2.69
41 42 1.666189 GGCGTCTCACTCAAATAAGGC 59.334 52.381 0.00 0.00 0.00 4.35
42 43 2.622436 GCGTCTCACTCAAATAAGGCT 58.378 47.619 0.00 0.00 0.00 4.58
43 44 3.003480 GCGTCTCACTCAAATAAGGCTT 58.997 45.455 4.58 4.58 0.00 4.35
44 45 3.437049 GCGTCTCACTCAAATAAGGCTTT 59.563 43.478 4.45 0.00 0.00 3.51
45 46 4.083271 GCGTCTCACTCAAATAAGGCTTTT 60.083 41.667 4.45 0.00 0.00 2.27
46 47 5.562890 GCGTCTCACTCAAATAAGGCTTTTT 60.563 40.000 4.45 0.00 0.00 1.94
73 74 3.938778 GAACATTCGTTCGGATAACCC 57.061 47.619 0.00 0.00 42.05 4.11
74 75 2.320745 ACATTCGTTCGGATAACCCC 57.679 50.000 0.00 0.00 0.00 4.95
82 83 3.554962 CGGATAACCCCGTGGAAAA 57.445 52.632 0.00 0.00 44.23 2.29
83 84 1.089112 CGGATAACCCCGTGGAAAAC 58.911 55.000 0.00 0.00 44.23 2.43
84 85 1.611148 CGGATAACCCCGTGGAAAACA 60.611 52.381 0.00 0.00 44.23 2.83
85 86 2.730382 GGATAACCCCGTGGAAAACAT 58.270 47.619 0.00 0.00 34.81 2.71
86 87 2.686405 GGATAACCCCGTGGAAAACATC 59.314 50.000 0.00 0.00 34.81 3.06
87 88 2.953284 TAACCCCGTGGAAAACATCA 57.047 45.000 0.00 0.00 34.81 3.07
88 89 1.616159 AACCCCGTGGAAAACATCAG 58.384 50.000 0.00 0.00 34.81 2.90
89 90 0.893727 ACCCCGTGGAAAACATCAGC 60.894 55.000 0.00 0.00 34.81 4.26
90 91 0.893270 CCCCGTGGAAAACATCAGCA 60.893 55.000 0.00 0.00 0.00 4.41
91 92 0.958091 CCCGTGGAAAACATCAGCAA 59.042 50.000 0.00 0.00 0.00 3.91
92 93 1.545582 CCCGTGGAAAACATCAGCAAT 59.454 47.619 0.00 0.00 0.00 3.56
93 94 2.029110 CCCGTGGAAAACATCAGCAATT 60.029 45.455 0.00 0.00 0.00 2.32
94 95 3.554752 CCCGTGGAAAACATCAGCAATTT 60.555 43.478 0.00 0.00 0.00 1.82
95 96 4.057432 CCGTGGAAAACATCAGCAATTTT 58.943 39.130 0.00 0.00 0.00 1.82
96 97 4.511082 CCGTGGAAAACATCAGCAATTTTT 59.489 37.500 0.00 0.00 0.00 1.94
132 133 9.541143 AAAAAGAAAACTCTCTTTGTTCACAAA 57.459 25.926 5.05 5.05 43.33 2.83
133 134 9.710900 AAAAGAAAACTCTCTTTGTTCACAAAT 57.289 25.926 5.59 0.00 43.33 2.32
197 198 6.604930 TGGACTAAAATAAGTAAACAAGCGC 58.395 36.000 0.00 0.00 0.00 5.92
198 199 6.205076 TGGACTAAAATAAGTAAACAAGCGCA 59.795 34.615 11.47 0.00 0.00 6.09
199 200 6.522165 GGACTAAAATAAGTAAACAAGCGCAC 59.478 38.462 11.47 0.00 0.00 5.34
200 201 6.376177 ACTAAAATAAGTAAACAAGCGCACC 58.624 36.000 11.47 0.00 0.00 5.01
201 202 4.839668 AAATAAGTAAACAAGCGCACCA 57.160 36.364 11.47 0.00 0.00 4.17
202 203 4.419522 AATAAGTAAACAAGCGCACCAG 57.580 40.909 11.47 0.00 0.00 4.00
203 204 1.961793 AAGTAAACAAGCGCACCAGA 58.038 45.000 11.47 0.00 0.00 3.86
204 205 1.961793 AGTAAACAAGCGCACCAGAA 58.038 45.000 11.47 0.00 0.00 3.02
205 206 1.602377 AGTAAACAAGCGCACCAGAAC 59.398 47.619 11.47 0.41 0.00 3.01
206 207 1.602377 GTAAACAAGCGCACCAGAACT 59.398 47.619 11.47 0.00 0.00 3.01
207 208 1.102978 AAACAAGCGCACCAGAACTT 58.897 45.000 11.47 0.00 0.00 2.66
208 209 0.381801 AACAAGCGCACCAGAACTTG 59.618 50.000 11.47 5.06 43.99 3.16
209 210 0.748005 ACAAGCGCACCAGAACTTGT 60.748 50.000 11.47 5.80 45.86 3.16
210 211 0.040958 CAAGCGCACCAGAACTTGTC 60.041 55.000 11.47 0.00 35.81 3.18
211 212 0.179045 AAGCGCACCAGAACTTGTCT 60.179 50.000 11.47 0.00 36.88 3.41
212 213 0.679505 AGCGCACCAGAACTTGTCTA 59.320 50.000 11.47 0.00 33.56 2.59
213 214 1.276421 AGCGCACCAGAACTTGTCTAT 59.724 47.619 11.47 0.00 33.56 1.98
214 215 1.394917 GCGCACCAGAACTTGTCTATG 59.605 52.381 0.30 0.00 33.56 2.23
215 216 2.688507 CGCACCAGAACTTGTCTATGT 58.311 47.619 0.00 0.00 33.56 2.29
216 217 3.845178 CGCACCAGAACTTGTCTATGTA 58.155 45.455 0.00 0.00 33.56 2.29
217 218 3.612860 CGCACCAGAACTTGTCTATGTAC 59.387 47.826 0.00 0.00 33.56 2.90
218 219 4.566004 GCACCAGAACTTGTCTATGTACA 58.434 43.478 0.00 0.00 33.56 2.90
219 220 5.178797 GCACCAGAACTTGTCTATGTACAT 58.821 41.667 13.93 13.93 33.56 2.29
220 221 5.643777 GCACCAGAACTTGTCTATGTACATT 59.356 40.000 14.77 0.00 33.56 2.71
221 222 6.183360 GCACCAGAACTTGTCTATGTACATTC 60.183 42.308 14.77 3.56 33.56 2.67
222 223 6.035005 CACCAGAACTTGTCTATGTACATTCG 59.965 42.308 14.77 6.10 33.56 3.34
223 224 6.071560 ACCAGAACTTGTCTATGTACATTCGA 60.072 38.462 14.77 8.45 33.56 3.71
224 225 6.980978 CCAGAACTTGTCTATGTACATTCGAT 59.019 38.462 14.77 0.00 33.56 3.59
225 226 7.492669 CCAGAACTTGTCTATGTACATTCGATT 59.507 37.037 14.77 2.93 33.56 3.34
226 227 9.516314 CAGAACTTGTCTATGTACATTCGATTA 57.484 33.333 14.77 2.87 33.56 1.75
239 240 9.047371 TGTACATTCGATTAAAAAGTCAGAACA 57.953 29.630 0.00 0.00 0.00 3.18
242 243 9.003658 ACATTCGATTAAAAAGTCAGAACATCT 57.996 29.630 0.00 0.00 0.00 2.90
243 244 9.270576 CATTCGATTAAAAAGTCAGAACATCTG 57.729 33.333 0.88 0.88 45.59 2.90
244 245 7.962964 TCGATTAAAAAGTCAGAACATCTGT 57.037 32.000 7.21 0.00 44.58 3.41
245 246 7.796838 TCGATTAAAAAGTCAGAACATCTGTG 58.203 34.615 7.21 0.00 44.58 3.66
246 247 7.655732 TCGATTAAAAAGTCAGAACATCTGTGA 59.344 33.333 7.21 0.00 44.58 3.58
247 248 8.282592 CGATTAAAAAGTCAGAACATCTGTGAA 58.717 33.333 7.21 0.00 44.58 3.18
248 249 9.950680 GATTAAAAAGTCAGAACATCTGTGAAA 57.049 29.630 7.21 0.00 44.58 2.69
249 250 9.956720 ATTAAAAAGTCAGAACATCTGTGAAAG 57.043 29.630 7.21 0.00 44.58 2.62
250 251 6.382869 AAAAGTCAGAACATCTGTGAAAGG 57.617 37.500 7.21 0.00 44.58 3.11
251 252 4.963318 AGTCAGAACATCTGTGAAAGGA 57.037 40.909 7.21 0.00 44.58 3.36
252 253 4.892433 AGTCAGAACATCTGTGAAAGGAG 58.108 43.478 7.21 0.00 44.58 3.69
253 254 3.999663 GTCAGAACATCTGTGAAAGGAGG 59.000 47.826 7.21 0.00 44.58 4.30
254 255 3.648067 TCAGAACATCTGTGAAAGGAGGT 59.352 43.478 7.21 0.00 44.58 3.85
255 256 4.838423 TCAGAACATCTGTGAAAGGAGGTA 59.162 41.667 7.21 0.00 44.58 3.08
256 257 5.306937 TCAGAACATCTGTGAAAGGAGGTAA 59.693 40.000 7.21 0.00 44.58 2.85
257 258 5.997746 CAGAACATCTGTGAAAGGAGGTAAA 59.002 40.000 0.00 0.00 39.58 2.01
258 259 6.486657 CAGAACATCTGTGAAAGGAGGTAAAA 59.513 38.462 0.00 0.00 39.58 1.52
259 260 6.712547 AGAACATCTGTGAAAGGAGGTAAAAG 59.287 38.462 0.00 0.00 0.00 2.27
260 261 4.762251 ACATCTGTGAAAGGAGGTAAAAGC 59.238 41.667 0.00 0.00 0.00 3.51
261 262 4.431416 TCTGTGAAAGGAGGTAAAAGCA 57.569 40.909 0.00 0.00 0.00 3.91
262 263 4.985538 TCTGTGAAAGGAGGTAAAAGCAT 58.014 39.130 0.00 0.00 0.00 3.79
263 264 5.385198 TCTGTGAAAGGAGGTAAAAGCATT 58.615 37.500 0.00 0.00 0.00 3.56
264 265 5.833131 TCTGTGAAAGGAGGTAAAAGCATTT 59.167 36.000 0.00 0.00 42.41 2.32
321 326 1.797635 GCAGCTCGAAATATCTGGCTC 59.202 52.381 0.00 0.00 31.74 4.70
326 332 1.340248 TCGAAATATCTGGCTCGTCCC 59.660 52.381 0.00 0.00 33.15 4.46
369 375 1.502474 AGGGGCCTACGTAATCTACCT 59.498 52.381 0.84 0.00 0.00 3.08
370 376 2.090887 AGGGGCCTACGTAATCTACCTT 60.091 50.000 0.84 0.00 0.00 3.50
371 377 2.702478 GGGGCCTACGTAATCTACCTTT 59.298 50.000 0.84 0.00 0.00 3.11
372 378 3.135348 GGGGCCTACGTAATCTACCTTTT 59.865 47.826 0.84 0.00 0.00 2.27
424 440 3.889044 GCTCGACAGCGGATCGGA 61.889 66.667 4.16 0.00 40.05 4.55
428 444 2.761195 CGACAGCGGATCGGAGTCA 61.761 63.158 19.10 0.00 35.92 3.41
438 454 2.088423 GATCGGAGTCAGACAGTGAGT 58.912 52.381 2.66 0.00 41.97 3.41
442 458 2.235016 GGAGTCAGACAGTGAGTGAGT 58.765 52.381 2.66 1.64 39.11 3.41
444 460 1.959985 AGTCAGACAGTGAGTGAGTGG 59.040 52.381 2.66 0.00 37.45 4.00
446 462 1.043816 CAGACAGTGAGTGAGTGGGT 58.956 55.000 0.00 0.00 0.00 4.51
452 468 1.133325 AGTGAGTGAGTGGGTGAGAGT 60.133 52.381 0.00 0.00 0.00 3.24
454 470 0.037790 GAGTGAGTGGGTGAGAGTGC 60.038 60.000 0.00 0.00 0.00 4.40
459 475 2.601666 TGGGTGAGAGTGCGAGCT 60.602 61.111 0.00 0.00 0.00 4.09
460 476 2.183046 GGGTGAGAGTGCGAGCTC 59.817 66.667 2.73 2.73 35.82 4.09
462 478 2.183046 GTGAGAGTGCGAGCTCCC 59.817 66.667 8.47 0.00 36.20 4.30
1030 1054 2.131023 GGTTGATTCATCCCTCCCTCT 58.869 52.381 2.76 0.00 0.00 3.69
1069 1093 2.538939 GCGTTTCTTTGCGTCTTCTGTT 60.539 45.455 0.00 0.00 0.00 3.16
1073 1097 5.383130 GTTTCTTTGCGTCTTCTGTTATCC 58.617 41.667 0.00 0.00 0.00 2.59
1141 1170 3.182996 GGGGTGGTGGAGGTTGGT 61.183 66.667 0.00 0.00 0.00 3.67
1371 1445 0.035176 GGTACGCTTACCAACCACCA 59.965 55.000 14.26 0.00 46.59 4.17
1374 1448 0.816421 ACGCTTACCAACCACCACAC 60.816 55.000 0.00 0.00 0.00 3.82
1376 1450 1.616159 GCTTACCAACCACCACACAT 58.384 50.000 0.00 0.00 0.00 3.21
1381 1455 1.073284 ACCAACCACCACACATCTACC 59.927 52.381 0.00 0.00 0.00 3.18
1390 1464 3.118629 ACCACACATCTACCTGTATGCAG 60.119 47.826 3.45 3.45 42.22 4.41
1392 1466 4.202295 CCACACATCTACCTGTATGCAGAT 60.202 45.833 12.93 0.00 45.28 2.90
1393 1467 5.011023 CCACACATCTACCTGTATGCAGATA 59.989 44.000 12.93 0.00 45.28 1.98
1407 1487 8.875803 CTGTATGCAGATACTACTACTAGTAGC 58.124 40.741 26.54 12.74 46.38 3.58
1438 1518 1.341383 ACAATCAGCCAATCAGGACCC 60.341 52.381 0.00 0.00 41.22 4.46
1480 1560 2.477754 GGAGTGACCCGTTAAAAGTTCG 59.522 50.000 0.00 0.00 0.00 3.95
1481 1561 1.869132 AGTGACCCGTTAAAAGTTCGC 59.131 47.619 0.00 0.00 0.00 4.70
1482 1562 1.598601 GTGACCCGTTAAAAGTTCGCA 59.401 47.619 0.00 0.00 0.00 5.10
1496 1577 5.376854 AAGTTCGCATCTTGCTTTTGTAT 57.623 34.783 0.00 0.00 42.25 2.29
1504 1585 6.751425 CGCATCTTGCTTTTGTATATCCAAAA 59.249 34.615 6.11 6.11 42.25 2.44
1525 1606 9.357652 CCAAAATAGTTTTACATGTCTTGGATG 57.642 33.333 0.00 0.00 0.00 3.51
1533 1618 3.282021 ACATGTCTTGGATGCCATGTAC 58.718 45.455 5.29 0.00 44.38 2.90
1545 1630 5.295787 GGATGCCATGTACGTTCAGAATTTA 59.704 40.000 0.00 0.00 0.00 1.40
1549 1634 5.447279 GCCATGTACGTTCAGAATTTACTGG 60.447 44.000 0.00 0.00 38.31 4.00
1588 1678 3.324846 AGTGTCTACCATTGTTCTCTGCA 59.675 43.478 0.00 0.00 0.00 4.41
1592 1682 4.811557 GTCTACCATTGTTCTCTGCATACC 59.188 45.833 0.00 0.00 0.00 2.73
1690 1816 2.666317 GGGATTCGGAAATGGGAATGT 58.334 47.619 0.00 0.00 33.25 2.71
1691 1817 2.623416 GGGATTCGGAAATGGGAATGTC 59.377 50.000 0.00 0.00 33.25 3.06
1692 1818 3.555966 GGATTCGGAAATGGGAATGTCT 58.444 45.455 0.00 0.00 33.25 3.41
1693 1819 3.954258 GGATTCGGAAATGGGAATGTCTT 59.046 43.478 0.00 0.00 33.25 3.01
1694 1820 5.130350 GGATTCGGAAATGGGAATGTCTTA 58.870 41.667 0.00 0.00 33.25 2.10
1695 1821 5.592688 GGATTCGGAAATGGGAATGTCTTAA 59.407 40.000 0.00 0.00 33.25 1.85
1696 1822 5.890424 TTCGGAAATGGGAATGTCTTAAC 57.110 39.130 0.00 0.00 0.00 2.01
1697 1823 5.174037 TCGGAAATGGGAATGTCTTAACT 57.826 39.130 0.00 0.00 0.00 2.24
1698 1824 4.941263 TCGGAAATGGGAATGTCTTAACTG 59.059 41.667 0.00 0.00 0.00 3.16
1699 1825 4.438744 CGGAAATGGGAATGTCTTAACTGC 60.439 45.833 0.00 0.00 0.00 4.40
1700 1826 4.462483 GGAAATGGGAATGTCTTAACTGCA 59.538 41.667 0.00 0.00 0.00 4.41
1701 1827 5.391312 AAATGGGAATGTCTTAACTGCAC 57.609 39.130 0.00 0.00 0.00 4.57
1702 1828 3.500448 TGGGAATGTCTTAACTGCACA 57.500 42.857 0.00 0.00 0.00 4.57
1703 1829 3.826524 TGGGAATGTCTTAACTGCACAA 58.173 40.909 0.00 0.00 0.00 3.33
1704 1830 4.211125 TGGGAATGTCTTAACTGCACAAA 58.789 39.130 0.00 0.00 0.00 2.83
1705 1831 4.646945 TGGGAATGTCTTAACTGCACAAAA 59.353 37.500 0.00 0.00 0.00 2.44
1706 1832 5.304101 TGGGAATGTCTTAACTGCACAAAAT 59.696 36.000 0.00 0.00 0.00 1.82
1707 1833 5.634859 GGGAATGTCTTAACTGCACAAAATG 59.365 40.000 0.00 0.00 0.00 2.32
1721 1847 4.093514 CACAAAATGCTGATGATGTCGTC 58.906 43.478 0.00 0.00 0.00 4.20
1727 1853 2.099756 TGCTGATGATGTCGTCTACTGG 59.900 50.000 4.08 0.00 33.19 4.00
1812 1938 1.214589 GACGTCGGCCTAAGCTCAA 59.785 57.895 0.00 0.00 39.73 3.02
2023 2153 5.591099 TGACATTTCCTTCTTTTGTTGCTC 58.409 37.500 0.00 0.00 0.00 4.26
2210 2340 1.737793 CGGTAAATGTGAGCTTCCCAC 59.262 52.381 0.00 0.00 35.23 4.61
2256 2386 4.479993 CCCTGCTTCTGCTCCCCG 62.480 72.222 0.00 0.00 40.48 5.73
2271 2405 4.155733 CCGGTATGCCTGGCGACA 62.156 66.667 20.92 0.00 39.59 4.35
2301 2441 7.660112 TGTGTATAACGTTTAGACTTCCTTGA 58.340 34.615 5.91 0.00 0.00 3.02
2312 2452 3.326006 AGACTTCCTTGATTGCAGTGAGA 59.674 43.478 0.00 0.00 0.00 3.27
2345 2485 3.738982 AGTCGTGGATGATGTTTTCACA 58.261 40.909 0.00 0.00 37.11 3.58
2604 2758 4.036262 TGAATTTTGACAGTGTGTGTAGCC 59.964 41.667 0.00 0.00 40.56 3.93
2624 2980 2.484264 CCTGCAACTGTAAACTAGCACC 59.516 50.000 0.00 0.00 0.00 5.01
2666 3025 3.184382 CTCCTATTTGGGGGTTTGGTT 57.816 47.619 0.00 0.00 36.20 3.67
2681 3040 4.498009 GGTTTGGTTTGAGTGATCACAGTG 60.498 45.833 27.02 0.00 0.00 3.66
3077 3871 4.145052 CCCCAAAGATATTTAGGCTCCAC 58.855 47.826 0.00 0.00 0.00 4.02
3106 3902 4.009370 TGAACATTGGTCGGTAATCACA 57.991 40.909 0.00 0.00 0.00 3.58
3127 3961 5.118817 CACATGATCATCGATGCTTCTACTG 59.881 44.000 20.81 17.30 0.00 2.74
3186 4020 0.607489 ACAGTGACCAGCAATGAGCC 60.607 55.000 0.00 0.00 45.00 4.70
3246 4080 0.895530 AAAGAGGTCGAGATGCCGAA 59.104 50.000 0.00 0.00 40.51 4.30
3274 4108 1.227263 GATGTGCAGCGTCCGGTAT 60.227 57.895 0.00 0.00 0.00 2.73
3331 4188 0.105760 TTTCCTTCCAGCCCTTTGCA 60.106 50.000 0.00 0.00 44.83 4.08
3388 4246 1.293924 CCAGATGGTGTCAGAATCGC 58.706 55.000 0.00 0.00 0.00 4.58
3393 4251 2.254546 TGGTGTCAGAATCGCTGTTT 57.745 45.000 0.00 0.00 45.14 2.83
3566 4429 5.184671 AGCAGATCCCTTTGTTGATCTTTTC 59.815 40.000 0.00 0.00 43.98 2.29
3573 4436 8.884124 TCCCTTTGTTGATCTTTTCTCAATAT 57.116 30.769 0.00 0.00 35.26 1.28
3600 4463 6.479884 AGATCATGCCATAGATTTTACTCCC 58.520 40.000 0.00 0.00 0.00 4.30
3601 4464 5.912149 TCATGCCATAGATTTTACTCCCT 57.088 39.130 0.00 0.00 0.00 4.20
3602 4465 5.869579 TCATGCCATAGATTTTACTCCCTC 58.130 41.667 0.00 0.00 0.00 4.30
3603 4466 4.706842 TGCCATAGATTTTACTCCCTCC 57.293 45.455 0.00 0.00 0.00 4.30
3604 4467 3.071023 TGCCATAGATTTTACTCCCTCCG 59.929 47.826 0.00 0.00 0.00 4.63
3605 4468 3.071167 GCCATAGATTTTACTCCCTCCGT 59.929 47.826 0.00 0.00 0.00 4.69
3606 4469 4.444449 GCCATAGATTTTACTCCCTCCGTT 60.444 45.833 0.00 0.00 0.00 4.44
3607 4470 5.298347 CCATAGATTTTACTCCCTCCGTTC 58.702 45.833 0.00 0.00 0.00 3.95
3608 4471 3.908643 AGATTTTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
3609 4472 3.451890 AGATTTTACTCCCTCCGTTCCT 58.548 45.455 0.00 0.00 0.00 3.36
3610 4473 4.617593 AGATTTTACTCCCTCCGTTCCTA 58.382 43.478 0.00 0.00 0.00 2.94
3611 4474 5.028131 AGATTTTACTCCCTCCGTTCCTAA 58.972 41.667 0.00 0.00 0.00 2.69
3612 4475 5.486419 AGATTTTACTCCCTCCGTTCCTAAA 59.514 40.000 0.00 0.00 0.00 1.85
3613 4476 5.767277 TTTTACTCCCTCCGTTCCTAAAT 57.233 39.130 0.00 0.00 0.00 1.40
3614 4477 6.872585 TTTTACTCCCTCCGTTCCTAAATA 57.127 37.500 0.00 0.00 0.00 1.40
3615 4478 5.859205 TTACTCCCTCCGTTCCTAAATAC 57.141 43.478 0.00 0.00 0.00 1.89
3616 4479 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3617 4480 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3618 4481 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3619 4482 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3620 4483 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3621 4484 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3622 4485 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3623 4486 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3624 4487 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3625 4488 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3626 4489 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3627 4490 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3628 4491 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
3652 4515 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
3653 4516 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
3654 4517 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
3655 4518 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
3656 4519 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
3658 4521 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
3659 4522 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
3698 4561 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
3699 4562 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
3700 4563 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
3701 4564 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3702 4565 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3703 4566 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3704 4567 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3705 4568 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3706 4569 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3707 4570 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3708 4571 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3709 4572 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3710 4573 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3711 4574 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
3712 4575 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
3713 4576 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
3714 4577 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
3715 4578 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
3716 4579 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
3717 4580 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
3718 4581 4.868171 GCTCCGTATGTAGTCATTTGTTGA 59.132 41.667 0.00 0.00 35.70 3.18
3719 4582 5.350365 GCTCCGTATGTAGTCATTTGTTGAA 59.650 40.000 0.00 0.00 35.70 2.69
3720 4583 6.128391 GCTCCGTATGTAGTCATTTGTTGAAA 60.128 38.462 0.00 0.00 35.70 2.69
3721 4584 7.414098 GCTCCGTATGTAGTCATTTGTTGAAAT 60.414 37.037 0.00 0.00 35.70 2.17
3722 4585 7.747888 TCCGTATGTAGTCATTTGTTGAAATG 58.252 34.615 0.00 0.00 46.84 2.32
3723 4586 6.468956 CCGTATGTAGTCATTTGTTGAAATGC 59.531 38.462 0.00 0.00 45.61 3.56
3724 4587 6.468956 CGTATGTAGTCATTTGTTGAAATGCC 59.531 38.462 0.00 0.00 45.61 4.40
3725 4588 6.594788 ATGTAGTCATTTGTTGAAATGCCT 57.405 33.333 0.00 0.00 45.61 4.75
3726 4589 7.701539 ATGTAGTCATTTGTTGAAATGCCTA 57.298 32.000 0.00 0.00 45.61 3.93
3727 4590 7.144722 TGTAGTCATTTGTTGAAATGCCTAG 57.855 36.000 0.00 0.00 45.61 3.02
3728 4591 6.939730 TGTAGTCATTTGTTGAAATGCCTAGA 59.060 34.615 0.00 0.00 45.61 2.43
3729 4592 6.899393 AGTCATTTGTTGAAATGCCTAGAA 57.101 33.333 0.00 0.00 45.61 2.10
3730 4593 7.288810 AGTCATTTGTTGAAATGCCTAGAAA 57.711 32.000 0.00 0.00 45.61 2.52
3731 4594 7.373493 AGTCATTTGTTGAAATGCCTAGAAAG 58.627 34.615 0.00 0.00 45.61 2.62
3732 4595 7.231317 AGTCATTTGTTGAAATGCCTAGAAAGA 59.769 33.333 0.00 0.00 45.61 2.52
3733 4596 7.327032 GTCATTTGTTGAAATGCCTAGAAAGAC 59.673 37.037 0.00 0.00 45.61 3.01
3734 4597 6.707440 TTTGTTGAAATGCCTAGAAAGACA 57.293 33.333 0.00 0.00 0.00 3.41
3735 4598 6.707440 TTGTTGAAATGCCTAGAAAGACAA 57.293 33.333 0.00 0.00 0.00 3.18
3736 4599 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
3737 4600 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
3738 4601 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
3739 4602 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
3740 4603 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
3741 4604 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3742 4605 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3744 4607 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
3745 4608 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
3746 4609 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
3747 4610 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
3748 4611 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
3749 4612 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
3750 4613 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3751 4614 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3752 4615 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3753 4616 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3754 4617 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3755 4618 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3756 4619 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
3768 4631 1.139256 GGAGGGAGTACTTGCTTAGCC 59.861 57.143 0.29 0.00 0.00 3.93
3772 4635 3.052793 AGGGAGTACTTGCTTAGCCTCTA 60.053 47.826 0.29 0.00 0.00 2.43
3787 4650 3.076032 AGCCTCTACATTCCCCACTTTTT 59.924 43.478 0.00 0.00 0.00 1.94
3829 4694 5.048434 GCTCTGCCCAATTATTTATCAGGTC 60.048 44.000 0.00 0.00 0.00 3.85
3863 4731 2.501610 GTCCCCCATGTCTCTCGC 59.498 66.667 0.00 0.00 0.00 5.03
4034 4931 9.989296 TTGAGATTCTTAAATTCCTATTTCCCA 57.011 29.630 0.00 0.00 35.61 4.37
4037 4934 9.997172 AGATTCTTAAATTCCTATTTCCCAACT 57.003 29.630 0.00 0.00 35.61 3.16
4062 4975 7.811117 TGTGGCTAAAACAAGTAGTACAATT 57.189 32.000 2.52 0.00 0.00 2.32
4105 5018 7.598759 TCACTTACCACTTCTCTAACTTCTT 57.401 36.000 0.00 0.00 0.00 2.52
4106 5019 7.434492 TCACTTACCACTTCTCTAACTTCTTG 58.566 38.462 0.00 0.00 0.00 3.02
4107 5020 6.146347 CACTTACCACTTCTCTAACTTCTTGC 59.854 42.308 0.00 0.00 0.00 4.01
4111 5024 5.760743 ACCACTTCTCTAACTTCTTGCTTTC 59.239 40.000 0.00 0.00 0.00 2.62
4112 5025 5.107298 CCACTTCTCTAACTTCTTGCTTTCG 60.107 44.000 0.00 0.00 0.00 3.46
4114 5027 6.018669 CACTTCTCTAACTTCTTGCTTTCGTT 60.019 38.462 0.00 0.00 0.00 3.85
4162 5115 9.705290 TTACAATTTCCCTATTTTCTTGCTTTC 57.295 29.630 0.00 0.00 0.00 2.62
4163 5116 6.868339 ACAATTTCCCTATTTTCTTGCTTTCG 59.132 34.615 0.00 0.00 0.00 3.46
4167 5120 6.399639 TCCCTATTTTCTTGCTTTCGTTTT 57.600 33.333 0.00 0.00 0.00 2.43
4168 5121 6.811954 TCCCTATTTTCTTGCTTTCGTTTTT 58.188 32.000 0.00 0.00 0.00 1.94
4198 5151 8.816640 AATTGTACTACTTTGCCATTCTTTTG 57.183 30.769 0.00 0.00 0.00 2.44
4199 5152 6.952773 TGTACTACTTTGCCATTCTTTTGT 57.047 33.333 0.00 0.00 0.00 2.83
4317 5270 6.662616 AGTCGTCATCTCTTTTGTCAAATTG 58.337 36.000 0.00 0.00 0.00 2.32
4319 5272 5.048782 TCGTCATCTCTTTTGTCAAATTGGG 60.049 40.000 0.00 0.00 0.00 4.12
4320 5273 5.048782 CGTCATCTCTTTTGTCAAATTGGGA 60.049 40.000 0.00 1.73 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.081708 CGCCGTAAAAGGTGTTGCC 60.082 57.895 0.00 0.00 37.04 4.52
7 8 4.526152 CGCCGTAAAAGGTGTTGC 57.474 55.556 0.00 0.00 37.04 4.17
11 12 0.788391 GTGAGACGCCGTAAAAGGTG 59.212 55.000 0.00 0.00 46.65 4.00
12 13 0.677842 AGTGAGACGCCGTAAAAGGT 59.322 50.000 0.00 0.00 0.00 3.50
13 14 1.336517 TGAGTGAGACGCCGTAAAAGG 60.337 52.381 0.00 0.00 0.00 3.11
14 15 2.060326 TGAGTGAGACGCCGTAAAAG 57.940 50.000 0.00 0.00 0.00 2.27
15 16 2.512485 TTGAGTGAGACGCCGTAAAA 57.488 45.000 0.00 0.00 0.00 1.52
16 17 2.512485 TTTGAGTGAGACGCCGTAAA 57.488 45.000 0.00 0.00 0.00 2.01
17 18 2.736144 ATTTGAGTGAGACGCCGTAA 57.264 45.000 0.00 0.00 0.00 3.18
18 19 3.428452 CCTTATTTGAGTGAGACGCCGTA 60.428 47.826 0.00 0.00 0.00 4.02
19 20 2.607187 CTTATTTGAGTGAGACGCCGT 58.393 47.619 0.00 0.00 0.00 5.68
20 21 1.927174 CCTTATTTGAGTGAGACGCCG 59.073 52.381 0.00 0.00 0.00 6.46
21 22 1.666189 GCCTTATTTGAGTGAGACGCC 59.334 52.381 0.00 0.00 0.00 5.68
22 23 2.622436 AGCCTTATTTGAGTGAGACGC 58.378 47.619 0.00 0.00 0.00 5.19
23 24 5.613358 AAAAGCCTTATTTGAGTGAGACG 57.387 39.130 0.00 0.00 0.00 4.18
54 55 2.635714 GGGGTTATCCGAACGAATGTT 58.364 47.619 0.00 0.00 42.23 2.71
55 56 2.320745 GGGGTTATCCGAACGAATGT 57.679 50.000 0.00 0.00 36.01 2.71
65 66 2.203470 TGTTTTCCACGGGGTTATCC 57.797 50.000 2.12 0.00 34.93 2.59
66 67 3.349022 TGATGTTTTCCACGGGGTTATC 58.651 45.455 2.12 2.63 34.93 1.75
67 68 3.352648 CTGATGTTTTCCACGGGGTTAT 58.647 45.455 2.12 0.00 34.93 1.89
68 69 2.785562 CTGATGTTTTCCACGGGGTTA 58.214 47.619 2.12 0.00 34.93 2.85
69 70 1.616159 CTGATGTTTTCCACGGGGTT 58.384 50.000 2.12 0.00 34.93 4.11
70 71 0.893727 GCTGATGTTTTCCACGGGGT 60.894 55.000 2.12 0.00 34.93 4.95
71 72 0.893270 TGCTGATGTTTTCCACGGGG 60.893 55.000 0.00 0.00 0.00 5.73
72 73 0.958091 TTGCTGATGTTTTCCACGGG 59.042 50.000 0.00 0.00 0.00 5.28
73 74 3.302365 AATTGCTGATGTTTTCCACGG 57.698 42.857 0.00 0.00 0.00 4.94
74 75 5.655893 AAAAATTGCTGATGTTTTCCACG 57.344 34.783 0.00 0.00 0.00 4.94
106 107 9.541143 TTTGTGAACAAAGAGAGTTTTCTTTTT 57.459 25.926 4.52 0.00 43.08 1.94
171 172 8.392612 GCGCTTGTTTACTTATTTTAGTCCATA 58.607 33.333 0.00 0.00 0.00 2.74
172 173 7.094549 TGCGCTTGTTTACTTATTTTAGTCCAT 60.095 33.333 9.73 0.00 0.00 3.41
173 174 6.205076 TGCGCTTGTTTACTTATTTTAGTCCA 59.795 34.615 9.73 0.00 0.00 4.02
174 175 6.522165 GTGCGCTTGTTTACTTATTTTAGTCC 59.478 38.462 9.73 0.00 0.00 3.85
175 176 6.522165 GGTGCGCTTGTTTACTTATTTTAGTC 59.478 38.462 9.73 0.00 0.00 2.59
176 177 6.016943 TGGTGCGCTTGTTTACTTATTTTAGT 60.017 34.615 9.73 0.00 0.00 2.24
177 178 6.375377 TGGTGCGCTTGTTTACTTATTTTAG 58.625 36.000 9.73 0.00 0.00 1.85
178 179 6.205076 TCTGGTGCGCTTGTTTACTTATTTTA 59.795 34.615 9.73 0.00 0.00 1.52
179 180 5.009210 TCTGGTGCGCTTGTTTACTTATTTT 59.991 36.000 9.73 0.00 0.00 1.82
180 181 4.517453 TCTGGTGCGCTTGTTTACTTATTT 59.483 37.500 9.73 0.00 0.00 1.40
181 182 4.069304 TCTGGTGCGCTTGTTTACTTATT 58.931 39.130 9.73 0.00 0.00 1.40
182 183 3.670625 TCTGGTGCGCTTGTTTACTTAT 58.329 40.909 9.73 0.00 0.00 1.73
183 184 3.114668 TCTGGTGCGCTTGTTTACTTA 57.885 42.857 9.73 0.00 0.00 2.24
184 185 1.961793 TCTGGTGCGCTTGTTTACTT 58.038 45.000 9.73 0.00 0.00 2.24
185 186 1.602377 GTTCTGGTGCGCTTGTTTACT 59.398 47.619 9.73 0.00 0.00 2.24
186 187 1.602377 AGTTCTGGTGCGCTTGTTTAC 59.398 47.619 9.73 0.00 0.00 2.01
187 188 1.961793 AGTTCTGGTGCGCTTGTTTA 58.038 45.000 9.73 0.00 0.00 2.01
188 189 1.102978 AAGTTCTGGTGCGCTTGTTT 58.897 45.000 9.73 0.00 0.00 2.83
189 190 0.381801 CAAGTTCTGGTGCGCTTGTT 59.618 50.000 9.73 0.00 35.09 2.83
190 191 0.748005 ACAAGTTCTGGTGCGCTTGT 60.748 50.000 9.73 5.15 44.36 3.16
191 192 0.040958 GACAAGTTCTGGTGCGCTTG 60.041 55.000 9.73 4.42 42.65 4.01
192 193 0.179045 AGACAAGTTCTGGTGCGCTT 60.179 50.000 9.73 0.00 31.12 4.68
193 194 0.679505 TAGACAAGTTCTGGTGCGCT 59.320 50.000 9.73 0.00 35.55 5.92
194 195 1.394917 CATAGACAAGTTCTGGTGCGC 59.605 52.381 0.00 0.00 35.55 6.09
195 196 2.688507 ACATAGACAAGTTCTGGTGCG 58.311 47.619 0.00 0.00 35.55 5.34
196 197 4.566004 TGTACATAGACAAGTTCTGGTGC 58.434 43.478 0.00 0.00 35.55 5.01
197 198 6.035005 CGAATGTACATAGACAAGTTCTGGTG 59.965 42.308 9.21 0.00 35.55 4.17
198 199 6.071560 TCGAATGTACATAGACAAGTTCTGGT 60.072 38.462 9.21 0.00 35.55 4.00
199 200 6.330278 TCGAATGTACATAGACAAGTTCTGG 58.670 40.000 9.21 0.00 35.55 3.86
200 201 7.993821 ATCGAATGTACATAGACAAGTTCTG 57.006 36.000 9.21 0.00 35.55 3.02
213 214 9.047371 TGTTCTGACTTTTTAATCGAATGTACA 57.953 29.630 0.00 0.00 0.00 2.90
216 217 9.003658 AGATGTTCTGACTTTTTAATCGAATGT 57.996 29.630 0.00 0.00 0.00 2.71
234 235 5.825593 TTACCTCCTTTCACAGATGTTCT 57.174 39.130 0.00 0.00 0.00 3.01
235 236 6.568653 GCTTTTACCTCCTTTCACAGATGTTC 60.569 42.308 0.00 0.00 0.00 3.18
236 237 5.241728 GCTTTTACCTCCTTTCACAGATGTT 59.758 40.000 0.00 0.00 0.00 2.71
237 238 4.762251 GCTTTTACCTCCTTTCACAGATGT 59.238 41.667 0.00 0.00 0.00 3.06
238 239 4.761739 TGCTTTTACCTCCTTTCACAGATG 59.238 41.667 0.00 0.00 0.00 2.90
239 240 4.985538 TGCTTTTACCTCCTTTCACAGAT 58.014 39.130 0.00 0.00 0.00 2.90
240 241 4.431416 TGCTTTTACCTCCTTTCACAGA 57.569 40.909 0.00 0.00 0.00 3.41
241 242 5.712152 AATGCTTTTACCTCCTTTCACAG 57.288 39.130 0.00 0.00 0.00 3.66
242 243 6.478512 AAAATGCTTTTACCTCCTTTCACA 57.521 33.333 0.00 0.00 0.00 3.58
266 267 2.951642 CTCCAAGTGCAGTGAGGAAAAA 59.048 45.455 14.82 0.00 0.00 1.94
267 268 2.575532 CTCCAAGTGCAGTGAGGAAAA 58.424 47.619 14.82 0.00 0.00 2.29
268 269 1.202806 CCTCCAAGTGCAGTGAGGAAA 60.203 52.381 18.89 0.00 45.93 3.13
269 270 0.397941 CCTCCAAGTGCAGTGAGGAA 59.602 55.000 18.89 4.41 45.93 3.36
270 271 2.061220 CCTCCAAGTGCAGTGAGGA 58.939 57.895 18.89 16.22 45.93 3.71
271 272 1.673665 GCCTCCAAGTGCAGTGAGG 60.674 63.158 19.21 19.21 45.83 3.86
272 273 2.031516 CGCCTCCAAGTGCAGTGAG 61.032 63.158 0.00 0.00 0.00 3.51
273 274 2.031012 CGCCTCCAAGTGCAGTGA 59.969 61.111 0.00 0.00 0.00 3.41
274 275 2.281070 ACGCCTCCAAGTGCAGTG 60.281 61.111 0.00 0.00 0.00 3.66
275 276 2.281070 CACGCCTCCAAGTGCAGT 60.281 61.111 0.00 0.00 0.00 4.40
276 277 3.052082 CCACGCCTCCAAGTGCAG 61.052 66.667 0.00 0.00 37.07 4.41
277 278 3.555324 TCCACGCCTCCAAGTGCA 61.555 61.111 0.00 0.00 37.07 4.57
278 279 3.050275 GTCCACGCCTCCAAGTGC 61.050 66.667 0.00 0.00 37.07 4.40
279 280 1.374758 GAGTCCACGCCTCCAAGTG 60.375 63.158 0.00 0.00 38.05 3.16
280 281 2.932234 CGAGTCCACGCCTCCAAGT 61.932 63.158 0.00 0.00 0.00 3.16
281 282 2.125912 CGAGTCCACGCCTCCAAG 60.126 66.667 0.00 0.00 0.00 3.61
326 332 5.545063 TTTCTTTTAGGCCTTTCCCAAAG 57.455 39.130 12.58 12.07 37.14 2.77
341 347 2.670019 ACGTAGGCCCCTTTTCTTTT 57.330 45.000 0.00 0.00 0.00 2.27
342 348 3.793819 TTACGTAGGCCCCTTTTCTTT 57.206 42.857 0.00 0.00 0.00 2.52
369 375 6.597672 TGGATTCGCTTAATCTAGCAGAAAAA 59.402 34.615 8.13 0.00 43.14 1.94
370 376 6.112734 TGGATTCGCTTAATCTAGCAGAAAA 58.887 36.000 8.13 0.00 43.14 2.29
371 377 5.670485 TGGATTCGCTTAATCTAGCAGAAA 58.330 37.500 8.13 0.00 43.14 2.52
372 378 5.276461 TGGATTCGCTTAATCTAGCAGAA 57.724 39.130 8.13 0.00 43.14 3.02
417 433 1.403679 CTCACTGTCTGACTCCGATCC 59.596 57.143 9.51 0.00 0.00 3.36
422 438 2.030363 CACTCACTCACTGTCTGACTCC 60.030 54.545 9.51 0.00 0.00 3.85
424 440 1.959985 CCACTCACTCACTGTCTGACT 59.040 52.381 9.51 0.00 0.00 3.41
428 444 1.043816 CACCCACTCACTCACTGTCT 58.956 55.000 0.00 0.00 0.00 3.41
438 454 1.527433 CTCGCACTCTCACCCACTCA 61.527 60.000 0.00 0.00 0.00 3.41
442 458 2.601666 AGCTCGCACTCTCACCCA 60.602 61.111 0.00 0.00 0.00 4.51
444 460 2.183046 GGAGCTCGCACTCTCACC 59.817 66.667 7.83 0.00 36.87 4.02
446 462 3.071206 GGGGAGCTCGCACTCTCA 61.071 66.667 29.41 0.00 39.06 3.27
1011 1035 3.044894 AGAGAGGGAGGGATGAATCAAC 58.955 50.000 0.00 0.00 0.00 3.18
1019 1043 1.235696 GGCAGAGAGAGGGAGGGAT 59.764 63.158 0.00 0.00 0.00 3.85
1030 1054 2.895680 GCTGGATCGTGGCAGAGA 59.104 61.111 1.34 0.00 0.00 3.10
1069 1093 3.115390 AGTAGGCAGCTCCAAAAGGATA 58.885 45.455 5.21 0.00 37.29 2.59
1073 1097 0.807496 GCAGTAGGCAGCTCCAAAAG 59.193 55.000 5.21 0.00 43.97 2.27
1360 1422 2.303600 GGTAGATGTGTGGTGGTTGGTA 59.696 50.000 0.00 0.00 0.00 3.25
1371 1445 5.835819 AGTATCTGCATACAGGTAGATGTGT 59.164 40.000 4.97 0.00 40.21 3.72
1374 1448 7.695480 AGTAGTATCTGCATACAGGTAGATG 57.305 40.000 4.97 0.00 40.21 2.90
1376 1450 7.975608 AGTAGTAGTATCTGCATACAGGTAGA 58.024 38.462 0.58 0.00 40.21 2.59
1407 1487 3.534554 TGGCTGATTGTGCATGTAGTAG 58.465 45.455 0.00 0.00 0.00 2.57
1410 1490 3.379057 TGATTGGCTGATTGTGCATGTAG 59.621 43.478 0.00 0.00 0.00 2.74
1438 1518 6.875195 ACTCCATGCACCAAATTAAATTTCAG 59.125 34.615 0.00 0.00 0.00 3.02
1504 1585 6.186957 TGGCATCCAAGACATGTAAAACTAT 58.813 36.000 0.00 0.00 0.00 2.12
1525 1606 5.447279 CCAGTAAATTCTGAACGTACATGGC 60.447 44.000 12.33 0.00 37.61 4.40
1533 1618 9.329913 CAAGTAAAATCCAGTAAATTCTGAACG 57.670 33.333 0.00 0.00 37.61 3.95
1545 1630 8.691661 ACACTAATTGTCAAGTAAAATCCAGT 57.308 30.769 0.00 0.00 29.79 4.00
1561 1647 7.413438 GCAGAGAACAATGGTAGACACTAATTG 60.413 40.741 0.00 0.00 36.04 2.32
1649 1743 5.488919 TCCCCTGAATTTCAACTATGTCTCT 59.511 40.000 0.01 0.00 0.00 3.10
1666 1768 0.550914 CCCATTTCCGAATCCCCTGA 59.449 55.000 0.00 0.00 0.00 3.86
1670 1772 2.623416 GACATTCCCATTTCCGAATCCC 59.377 50.000 0.00 0.00 0.00 3.85
1699 1825 4.087510 ACGACATCATCAGCATTTTGTG 57.912 40.909 0.00 0.00 0.00 3.33
1700 1826 4.005650 AGACGACATCATCAGCATTTTGT 58.994 39.130 0.00 0.00 0.00 2.83
1701 1827 4.611310 AGACGACATCATCAGCATTTTG 57.389 40.909 0.00 0.00 0.00 2.44
1702 1828 5.292834 CAGTAGACGACATCATCAGCATTTT 59.707 40.000 0.00 0.00 0.00 1.82
1703 1829 4.807834 CAGTAGACGACATCATCAGCATTT 59.192 41.667 0.00 0.00 0.00 2.32
1704 1830 4.366586 CAGTAGACGACATCATCAGCATT 58.633 43.478 0.00 0.00 0.00 3.56
1705 1831 3.243670 CCAGTAGACGACATCATCAGCAT 60.244 47.826 0.00 0.00 0.00 3.79
1706 1832 2.099756 CCAGTAGACGACATCATCAGCA 59.900 50.000 0.00 0.00 0.00 4.41
1707 1833 2.099921 ACCAGTAGACGACATCATCAGC 59.900 50.000 0.00 0.00 0.00 4.26
1708 1834 4.108336 CAACCAGTAGACGACATCATCAG 58.892 47.826 0.00 0.00 0.00 2.90
1709 1835 3.761752 TCAACCAGTAGACGACATCATCA 59.238 43.478 0.00 0.00 0.00 3.07
1710 1836 4.371855 TCAACCAGTAGACGACATCATC 57.628 45.455 0.00 0.00 0.00 2.92
1711 1837 4.801330 TTCAACCAGTAGACGACATCAT 57.199 40.909 0.00 0.00 0.00 2.45
1712 1838 4.801330 ATTCAACCAGTAGACGACATCA 57.199 40.909 0.00 0.00 0.00 3.07
1713 1839 6.481954 AAAATTCAACCAGTAGACGACATC 57.518 37.500 0.00 0.00 0.00 3.06
1714 1840 6.370718 GGTAAAATTCAACCAGTAGACGACAT 59.629 38.462 4.65 0.00 35.73 3.06
1715 1841 5.697633 GGTAAAATTCAACCAGTAGACGACA 59.302 40.000 4.65 0.00 35.73 4.35
1716 1842 5.697633 TGGTAAAATTCAACCAGTAGACGAC 59.302 40.000 7.58 0.00 40.84 4.34
1721 1847 7.012894 TCAGTTGTGGTAAAATTCAACCAGTAG 59.987 37.037 11.17 2.89 46.19 2.57
1727 1853 9.701355 CAAAATTCAGTTGTGGTAAAATTCAAC 57.299 29.630 0.00 0.00 39.95 3.18
1859 1988 0.465278 TGGTGGTGTGTGTGATGGTG 60.465 55.000 0.00 0.00 0.00 4.17
1973 2102 7.181485 GCAACTAGTTCCCTTGGGGTATATATA 59.819 40.741 4.77 0.00 44.74 0.86
1974 2103 6.012771 GCAACTAGTTCCCTTGGGGTATATAT 60.013 42.308 4.77 0.00 44.74 0.86
1975 2104 5.308759 GCAACTAGTTCCCTTGGGGTATATA 59.691 44.000 4.77 0.00 44.74 0.86
1976 2105 4.104261 GCAACTAGTTCCCTTGGGGTATAT 59.896 45.833 4.77 0.00 44.74 0.86
1977 2106 3.457012 GCAACTAGTTCCCTTGGGGTATA 59.543 47.826 4.77 0.00 44.74 1.47
1978 2107 2.241430 GCAACTAGTTCCCTTGGGGTAT 59.759 50.000 4.77 0.00 44.74 2.73
1979 2108 1.631898 GCAACTAGTTCCCTTGGGGTA 59.368 52.381 4.77 0.00 44.74 3.69
1981 2110 0.698818 AGCAACTAGTTCCCTTGGGG 59.301 55.000 4.77 0.00 46.11 4.96
1982 2111 1.351017 TCAGCAACTAGTTCCCTTGGG 59.649 52.381 4.77 0.00 0.00 4.12
1983 2112 2.224523 TGTCAGCAACTAGTTCCCTTGG 60.225 50.000 4.77 0.00 0.00 3.61
1984 2113 3.126001 TGTCAGCAACTAGTTCCCTTG 57.874 47.619 4.77 2.33 0.00 3.61
1985 2114 4.373156 AATGTCAGCAACTAGTTCCCTT 57.627 40.909 4.77 0.00 0.00 3.95
1987 2116 3.440522 GGAAATGTCAGCAACTAGTTCCC 59.559 47.826 4.77 0.00 32.13 3.97
2023 2153 2.093764 AGAAGAAGAGAACCATCTGCCG 60.094 50.000 0.00 0.00 35.54 5.69
2210 2340 5.943416 TGGTGACAATTGTAGTAGAAATGGG 59.057 40.000 11.95 0.00 37.44 4.00
2256 2386 0.958382 TTTGTGTCGCCAGGCATACC 60.958 55.000 13.30 4.15 32.95 2.73
2271 2405 8.715088 GGAAGTCTAAACGTTATACACATTTGT 58.285 33.333 0.00 0.00 40.02 2.83
2301 2441 0.109153 TGTGCCAGTCTCACTGCAAT 59.891 50.000 0.00 0.00 44.63 3.56
2312 2452 0.033504 CCACGACTAGTTGTGCCAGT 59.966 55.000 30.55 6.58 42.30 4.00
2509 2652 4.397417 AGATCAGAATTGGCAACTTACTGC 59.603 41.667 0.00 0.00 41.85 4.40
2604 2758 2.157668 CGGTGCTAGTTTACAGTTGCAG 59.842 50.000 0.00 0.00 35.14 4.41
2624 2980 4.514441 AGGATATGAGCTCAAGCATTTTCG 59.486 41.667 22.50 0.00 45.16 3.46
2666 3025 9.154847 CATAAAGTATTCACTGTGATCACTCAA 57.845 33.333 25.55 13.14 34.36 3.02
2681 3040 9.434559 GTCGGTAAAAAGATGCATAAAGTATTC 57.565 33.333 0.00 0.00 0.00 1.75
2951 3729 0.389817 TTCGACATCCCGTGCTTCTG 60.390 55.000 0.00 0.00 0.00 3.02
3077 3871 3.262420 CCGACCAATGTTCAAGACCTAG 58.738 50.000 0.00 0.00 0.00 3.02
3106 3902 5.465532 ACAGTAGAAGCATCGATGATCAT 57.534 39.130 29.20 16.50 0.00 2.45
3148 3982 2.298446 TGTCAGCAGAAGAGGAGACAAG 59.702 50.000 0.00 0.00 33.55 3.16
3186 4020 3.257561 CTTGCTCGTCGCCGATGG 61.258 66.667 6.46 0.00 43.27 3.51
3246 4080 1.472904 CGCTGCACATCTTCAGATCCT 60.473 52.381 0.00 0.00 31.21 3.24
3286 4120 1.332195 TCGATCATCTGCCGGAGATT 58.668 50.000 5.05 0.00 39.64 2.40
3331 4188 2.027745 ACTTGACAGCTCATCATCGGTT 60.028 45.455 0.00 0.00 0.00 4.44
3388 4246 5.617751 GCTGCTGTATTCACAAGGTAAACAG 60.618 44.000 0.00 0.00 36.74 3.16
3393 4251 3.694043 TGCTGCTGTATTCACAAGGTA 57.306 42.857 0.00 0.00 33.22 3.08
3492 4355 0.462789 AAGCAAGCAAGCAAGCACTT 59.537 45.000 10.52 1.34 36.85 3.16
3583 4446 3.071167 ACGGAGGGAGTAAAATCTATGGC 59.929 47.826 0.00 0.00 0.00 4.40
3594 4457 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
3595 4458 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
3596 4459 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3597 4460 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3598 4461 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3599 4462 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3600 4463 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3601 4464 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3602 4465 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
3626 4489 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
3627 4490 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
3628 4491 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
3629 4492 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
3630 4493 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
3631 4494 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
3632 4495 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
3633 4496 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
3672 4535 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
3673 4536 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
3674 4537 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
3675 4538 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
3676 4539 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
3677 4540 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
3678 4541 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
3679 4542 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3680 4543 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3681 4544 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3682 4545 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3683 4546 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3684 4547 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3685 4548 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3686 4549 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3687 4550 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
3688 4551 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
3689 4552 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
3690 4553 6.374333 ACAAATGACTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 35.50 1.82
3691 4554 5.703592 ACAAATGACTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 35.50 2.44
3692 4555 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
3693 4556 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
3694 4557 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
3695 4558 4.868171 TCAACAAATGACTACATACGGAGC 59.132 41.667 0.00 0.00 35.50 4.70
3696 4559 6.961359 TTCAACAAATGACTACATACGGAG 57.039 37.500 0.00 0.00 37.92 4.63
3697 4560 7.915293 ATTTCAACAAATGACTACATACGGA 57.085 32.000 0.00 0.00 37.92 4.69
3710 4573 7.288810 TGTCTTTCTAGGCATTTCAACAAAT 57.711 32.000 0.00 0.00 29.10 2.32
3711 4574 6.707440 TGTCTTTCTAGGCATTTCAACAAA 57.293 33.333 0.00 0.00 29.10 2.83
3712 4575 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
3713 4576 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
3714 4577 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
3715 4578 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3716 4579 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
3718 4581 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
3719 4582 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
3720 4583 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3721 4584 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3722 4585 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3723 4586 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3724 4587 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3725 4588 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3726 4589 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3727 4590 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3728 4591 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3729 4592 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3730 4593 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3731 4594 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3732 4595 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3733 4596 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3734 4597 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3735 4598 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3736 4599 4.892345 AGTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
3737 4600 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3738 4601 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3739 4602 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3740 4603 3.094572 CAAGTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
3741 4604 2.731572 CAAGTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
3742 4605 1.558233 CAAGTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
3743 4606 0.108281 GCAAGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
3744 4607 0.896226 AGCAAGTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
3745 4608 1.349067 AAGCAAGTACTCCCTCCGTT 58.651 50.000 0.00 0.00 0.00 4.44
3746 4609 2.100989 CTAAGCAAGTACTCCCTCCGT 58.899 52.381 0.00 0.00 0.00 4.69
3747 4610 1.202428 GCTAAGCAAGTACTCCCTCCG 60.202 57.143 0.00 0.00 0.00 4.63
3748 4611 1.139256 GGCTAAGCAAGTACTCCCTCC 59.861 57.143 0.00 0.00 0.00 4.30
3749 4612 2.101750 GAGGCTAAGCAAGTACTCCCTC 59.898 54.545 0.00 0.08 0.00 4.30
3750 4613 2.112190 GAGGCTAAGCAAGTACTCCCT 58.888 52.381 0.00 0.00 0.00 4.20
3751 4614 2.112190 AGAGGCTAAGCAAGTACTCCC 58.888 52.381 0.00 0.00 34.05 4.30
3752 4615 3.700038 TGTAGAGGCTAAGCAAGTACTCC 59.300 47.826 0.00 0.00 34.05 3.85
3753 4616 4.985538 TGTAGAGGCTAAGCAAGTACTC 57.014 45.455 0.00 0.00 33.87 2.59
3754 4617 5.163395 GGAATGTAGAGGCTAAGCAAGTACT 60.163 44.000 0.00 0.00 0.00 2.73
3755 4618 5.051153 GGAATGTAGAGGCTAAGCAAGTAC 58.949 45.833 0.00 0.00 0.00 2.73
3756 4619 4.101119 GGGAATGTAGAGGCTAAGCAAGTA 59.899 45.833 0.00 0.00 0.00 2.24
3829 4694 4.816925 GGGGGACGAATTTAAGAATCTCAG 59.183 45.833 0.00 0.00 0.00 3.35
3845 4710 2.808315 CGAGAGACATGGGGGACG 59.192 66.667 0.00 0.00 0.00 4.79
3863 4731 9.748708 TGAAAAAGAAGGAATGACAAATTAGTG 57.251 29.630 0.00 0.00 0.00 2.74
3977 4846 5.864628 AAAGAGATGGCGACTAAAACTTC 57.135 39.130 0.00 0.00 0.00 3.01
4037 4934 7.811117 ATTGTACTACTTGTTTTAGCCACAA 57.189 32.000 0.00 0.00 33.09 3.33
4089 5002 5.463724 ACGAAAGCAAGAAGTTAGAGAAGTG 59.536 40.000 0.00 0.00 0.00 3.16
4091 5004 6.532365 AACGAAAGCAAGAAGTTAGAGAAG 57.468 37.500 0.00 0.00 0.00 2.85
4095 5008 7.781548 AACTAAACGAAAGCAAGAAGTTAGA 57.218 32.000 0.00 0.00 0.00 2.10
4099 5012 7.535997 AGAAAAACTAAACGAAAGCAAGAAGT 58.464 30.769 0.00 0.00 0.00 3.01
4100 5013 7.971004 AGAAAAACTAAACGAAAGCAAGAAG 57.029 32.000 0.00 0.00 0.00 2.85
4135 5088 9.710900 AAAGCAAGAAAATAGGGAAATTGTAAG 57.289 29.630 0.00 0.00 0.00 2.34
4319 5272 5.719563 TGGGGAGGTTGGAATTTAAGAATTC 59.280 40.000 0.00 0.00 46.75 2.17
4320 5273 5.660533 TGGGGAGGTTGGAATTTAAGAATT 58.339 37.500 0.00 0.00 38.16 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.