AutoCloner

Multiple sequence alignment - TraesCS5A01G024200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G024200	chr5A	100.000	2528	0	0	1	2528	18949886	18952413	0.000000e+00	4669.0
1	TraesCS5A01G024200	chr5A	87.026	501	41	7	1316	1816	18920700	18921176	6.150000e-151	544.0
2	TraesCS5A01G024200	chr5A	86.141	368	42	9	2166	2528	18940377	18940740	3.050000e-104	388.0
3	TraesCS5A01G024200	chr5A	87.546	273	23	4	1893	2163	18921157	18921420	3.160000e-79	305.0
4	TraesCS5A01G024200	chr5A	93.143	175	12	0	119	293	18920336	18920510	8.970000e-65	257.0
5	TraesCS5A01G024200	chr5D	92.024	1868	85	25	4	1866	27690558	27692366	0.000000e+00	2566.0
6	TraesCS5A01G024200	chr5D	86.496	1096	102	13	782	1873	27681815	27682868	0.000000e+00	1162.0
7	TraesCS5A01G024200	chr5D	87.255	816	77	12	1733	2528	27692348	27693156	0.000000e+00	905.0
8	TraesCS5A01G024200	chr5D	85.158	822	71	22	1733	2528	27682890	27683686	0.000000e+00	795.0
9	TraesCS5A01G024200	chr5D	93.252	163	10	1	1733	1895	27692405	27692566	3.250000e-59	239.0
10	TraesCS5A01G024200	chr5D	84.337	166	12	6	377	534	27681193	27681352	1.570000e-32	150.0
11	TraesCS5A01G024200	chr5B	92.610	1299	81	11	601	1895	20688492	20689779	0.000000e+00	1853.0
12	TraesCS5A01G024200	chr5B	92.881	1194	70	10	601	1789	20672282	20673465	0.000000e+00	1720.0
13	TraesCS5A01G024200	chr5B	91.751	1091	81	6	783	1873	20013381	20012300	0.000000e+00	1507.0
14	TraesCS5A01G024200	chr5B	89.121	1103	97	8	778	1873	20066159	20065073	0.000000e+00	1351.0
15	TraesCS5A01G024200	chr5B	85.829	1122	110	14	756	1873	20036164	20035088	0.000000e+00	1146.0
16	TraesCS5A01G024200	chr5B	89.815	540	31	11	53	586	20671531	20672052	0.000000e+00	671.0
17	TraesCS5A01G024200	chr5B	89.815	540	31	11	53	586	20687741	20688262	0.000000e+00	671.0
18	TraesCS5A01G024200	chr5B	83.647	691	83	16	1733	2398	20064871	20064186	7.680000e-175	623.0
19	TraesCS5A01G024200	chr5B	82.595	632	71	20	1733	2351	20035066	20034461	2.880000e-144	521.0
20	TraesCS5A01G024200	chr5B	88.972	399	38	6	2135	2528	19995274	19994877	2.920000e-134	488.0
21	TraesCS5A01G024200	chr5B	81.073	671	60	29	1769	2416	20067722	20067096	8.180000e-130	473.0
22	TraesCS5A01G024200	chr5B	86.591	440	40	9	1795	2215	20689622	20690061	3.810000e-128	468.0
23	TraesCS5A01G024200	chr5B	90.154	325	26	3	2210	2528	20690613	20690937	3.890000e-113	418.0
24	TraesCS5A01G024200	chr5B	86.305	387	25	11	119	501	20037002	20036640	1.820000e-106	396.0
25	TraesCS5A01G024200	chr5B	89.441	322	19	7	53	373	20014111	20013804	2.360000e-105	392.0
26	TraesCS5A01G024200	chr5B	92.975	242	17	0	1896	2137	20012174	20011933	1.110000e-93	353.0
27	TraesCS5A01G024200	chr5B	85.294	340	21	12	465	784	20013792	20013462	8.720000e-85	324.0
28	TraesCS5A01G024200	chr5B	89.286	252	15	8	119	370	20072481	20072242	3.160000e-79	305.0
29	TraesCS5A01G024200	chr5B	92.638	163	11	1	1733	1895	20064814	20064653	1.510000e-57	233.0
30	TraesCS5A01G024200	chr5B	92.199	141	9	2	1733	1873	20064984	20064846	5.520000e-47	198.0
31	TraesCS5A01G024200	chr5B	83.688	141	20	2	2386	2526	20034458	20034321	2.040000e-26	130.0
32	TraesCS5A01G024200	chr1A	80.899	89	17	0	189	277	61713761	61713673	1.250000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G024200	chr5A	18949886	18952413	2527	False	4669.000000	4669	100.000000	1	2528	1	chr5A.!!$F2	2527
1	TraesCS5A01G024200	chr5A	18920336	18921420	1084	False	368.666667	544	89.238333	119	2163	3	chr5A.!!$F3	2044
2	TraesCS5A01G024200	chr5D	27690558	27693156	2598	False	1236.666667	2566	90.843667	4	2528	3	chr5D.!!$F2	2524
3	TraesCS5A01G024200	chr5D	27681193	27683686	2493	False	702.333333	1162	85.330333	377	2528	3	chr5D.!!$F1	2151
4	TraesCS5A01G024200	chr5B	20671531	20673465	1934	False	1195.500000	1720	91.348000	53	1789	2	chr5B.!!$F1	1736
5	TraesCS5A01G024200	chr5B	20687741	20690937	3196	False	852.500000	1853	89.792500	53	2528	4	chr5B.!!$F2	2475
6	TraesCS5A01G024200	chr5B	20011933	20014111	2178	True	644.000000	1507	89.865250	53	2137	4	chr5B.!!$R3	2084
7	TraesCS5A01G024200	chr5B	20064186	20067722	3536	True	575.600000	1351	87.735600	778	2416	5	chr5B.!!$R5	1638
8	TraesCS5A01G024200	chr5B	20034321	20037002	2681	True	548.250000	1146	84.604250	119	2526	4	chr5B.!!$R4	2407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
883	2744	0.616964	TGCTCATCCTCAGAGTGCCT	60.617	55.0	0.0	0.0	35.55	4.75	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2333	5336	0.899717	GCATGAGAGCCCACCCAAAA	60.9	55.0	0.0	0.0	0.0	2.44	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
67	68	5.481824	TCATCTCTCTGTTTCTTGCTTCCTA	59.518	40.000	0.00	0.00	0.00	2.94
186	189	2.046023	CCTGCTCATGGGCACGAA	60.046	61.111	18.52	0.00	37.29	3.85
282	285	2.411904	CTTCATAGGCGCCATCTCTTC	58.588	52.381	31.54	0.00	0.00	2.87
283	286	1.709578	TCATAGGCGCCATCTCTTCT	58.290	50.000	31.54	7.63	0.00	2.85
284	287	2.042464	TCATAGGCGCCATCTCTTCTT	58.958	47.619	31.54	6.76	0.00	2.52
285	288	2.036475	TCATAGGCGCCATCTCTTCTTC	59.964	50.000	31.54	0.00	0.00	2.87
286	289	1.781786	TAGGCGCCATCTCTTCTTCT	58.218	50.000	31.54	5.27	0.00	2.85
287	290	0.908198	AGGCGCCATCTCTTCTTCTT	59.092	50.000	31.54	0.00	0.00	2.52
288	291	1.134551	AGGCGCCATCTCTTCTTCTTC	60.135	52.381	31.54	0.00	0.00	2.87
289	292	1.134551	GGCGCCATCTCTTCTTCTTCT	60.135	52.381	24.80	0.00	0.00	2.85
290	293	2.626840	GCGCCATCTCTTCTTCTTCTT	58.373	47.619	0.00	0.00	0.00	2.52
305	308	9.546428	CTTCTTCTTCTTCTTCTTCTTCTTCTT	57.454	33.333	0.00	0.00	0.00	2.52
379	389	5.240183	TCGAGCACTAGTAGTACTGTTGTTT	59.760	40.000	13.29	3.24	0.00	2.83
427	448	9.853177	AATCCAAAACAATATTCTAGGTAGGAG	57.147	33.333	0.00	0.00	0.00	3.69
428	449	8.388656	TCCAAAACAATATTCTAGGTAGGAGT	57.611	34.615	0.00	0.00	0.00	3.85
429	450	9.496710	TCCAAAACAATATTCTAGGTAGGAGTA	57.503	33.333	0.00	0.00	0.00	2.59
439	460	3.797671	AGGTAGGAGTATTGGGGTTCT	57.202	47.619	0.00	0.00	0.00	3.01
570	868	5.848406	AGTAAATCTATTCGAGGAAGCCAG	58.152	41.667	0.00	0.00	0.00	4.85
593	1124	1.498865	CGTGAACAAGCCGAAGCACT	61.499	55.000	0.00	0.00	43.56	4.40
594	1125	0.663153	GTGAACAAGCCGAAGCACTT	59.337	50.000	0.00	0.00	43.56	3.16
595	1126	0.662619	TGAACAAGCCGAAGCACTTG	59.337	50.000	0.00	0.00	46.91	3.16
678	1211	2.024369	AGGATTTTTGGGTCGGGCTTAT	60.024	45.455	0.00	0.00	0.00	1.73
817	2677	8.542953	GCCTAAATAAATGAAACAAGCATTAGC	58.457	33.333	0.00	0.00	35.06	3.09
877	2738	5.426689	AAATAGTTGTGCTCATCCTCAGA	57.573	39.130	0.00	0.00	0.00	3.27
883	2744	0.616964	TGCTCATCCTCAGAGTGCCT	60.617	55.000	0.00	0.00	35.55	4.75
916	2782	6.567602	AATAGACATCCTGTAGGCTTTCTT	57.432	37.500	0.00	0.00	34.44	2.52
919	2785	4.472833	AGACATCCTGTAGGCTTTCTTCAT	59.527	41.667	0.00	0.00	34.44	2.57
920	2786	5.663106	AGACATCCTGTAGGCTTTCTTCATA	59.337	40.000	0.00	0.00	34.44	2.15
921	2787	6.328672	AGACATCCTGTAGGCTTTCTTCATAT	59.671	38.462	0.00	0.00	34.44	1.78
922	2788	7.510685	AGACATCCTGTAGGCTTTCTTCATATA	59.489	37.037	0.00	0.00	34.44	0.86
923	2789	7.675062	ACATCCTGTAGGCTTTCTTCATATAG	58.325	38.462	0.00	0.00	34.44	1.31
924	2790	7.291182	ACATCCTGTAGGCTTTCTTCATATAGT	59.709	37.037	0.00	0.00	34.44	2.12
943	2809	3.788937	AGTAATAGTATTGTGCGGCGTT	58.211	40.909	9.37	0.00	0.00	4.84
957	2823	2.507866	CGGCGTTAACAAAATTACCCG	58.492	47.619	6.39	0.86	0.00	5.28
1052	2918	1.557443	GCCGTCCTTCTCGTGTTGTG	61.557	60.000	0.00	0.00	0.00	3.33
1137	3003	0.179094	ACAACTTCTGCGTGTCGGAA	60.179	50.000	0.00	0.00	37.72	4.30
1224	3090	2.835605	CGTCAACAACGCCTATGGT	58.164	52.632	0.00	0.00	45.76	3.55
1244	3110	0.533531	GCCATCCATGACATCGAGCA	60.534	55.000	0.00	0.00	0.00	4.26
1284	3150	0.036388	TGGATGCCAAGACGAAGGTC	60.036	55.000	0.00	0.00	43.76	3.85
1358	3224	0.376152	GCCTACGACGAGATCAACGA	59.624	55.000	16.73	0.00	34.70	3.85
1380	3246	2.046120	AATTACGCCGCGGGGAAA	60.046	55.556	43.94	29.16	34.06	3.13
1466	3332	1.664649	CGTCGCCTCTCAAGCAACA	60.665	57.895	0.00	0.00	0.00	3.33
1468	3334	0.445436	GTCGCCTCTCAAGCAACATG	59.555	55.000	0.00	0.00	0.00	3.21
1502	3368	1.667724	GCAGACAGCGATAGTTTGCAT	59.332	47.619	11.72	0.00	43.98	3.96
1866	4050	9.880157	TTGTCTTATACCCTTTCAATGTACTAC	57.120	33.333	0.00	0.00	0.00	2.73
1868	4052	9.310716	GTCTTATACCCTTTCAATGTACTACAC	57.689	37.037	0.00	0.00	0.00	2.90
1873	4057	9.832445	ATACCCTTTCAATGTACTACACTTATG	57.168	33.333	0.00	0.00	0.00	1.90
1875	4059	7.822822	ACCCTTTCAATGTACTACACTTATGTC	59.177	37.037	0.00	0.00	40.48	3.06
1876	4060	7.822334	CCCTTTCAATGTACTACACTTATGTCA	59.178	37.037	0.00	0.00	40.48	3.58
1913	4347	6.313905	AGAGTTGCAATGTACTACACTTATGC	59.686	38.462	0.59	9.52	0.00	3.14
1918	4352	5.354234	GCAATGTACTACACTTATGCCACTT	59.646	40.000	0.00	0.00	0.00	3.16
1936	4370	6.655003	TGCCACTTAAATAAGAAGAGTTGAGG	59.345	38.462	7.17	0.00	37.08	3.86
1945	4379	9.853177	AAATAAGAAGAGTTGAGGAAAGAAGAA	57.147	29.630	0.00	0.00	0.00	2.52
1963	4397	9.642343	AAAGAAGAAGTAAACCCAATAAAGACT	57.358	29.630	0.00	0.00	0.00	3.24
2016	4456	1.069227	CACTTAAGTGTTTCCGGCTGC	60.069	52.381	24.70	0.00	40.96	5.25
2163	4604	5.627499	TTCTGCATATGAACAGAACCAAC	57.373	39.130	17.06	0.00	45.48	3.77
2313	5316	3.591023	TGAGCATTGACATTTTGGCATG	58.409	40.909	0.00	0.00	33.90	4.06
2324	5327	6.265196	TGACATTTTGGCATGAGAGTAAACTT	59.735	34.615	0.00	0.00	24.43	2.66
2329	5332	7.435068	TTTGGCATGAGAGTAAACTTAGTTC	57.565	36.000	0.00	0.00	0.00	3.01
2333	5336	7.178628	TGGCATGAGAGTAAACTTAGTTCTACT	59.821	37.037	14.83	14.83	0.00	2.57
2338	5341	9.760077	TGAGAGTAAACTTAGTTCTACTTTTGG	57.240	33.333	15.54	0.00	0.00	3.28
2365	5368	0.392193	CTCATGCCCTCAAGAACGCT	60.392	55.000	0.00	0.00	0.00	5.07
2507	5514	3.135530	ACCATAGCTTTAGAGAAGGCAGG	59.864	47.826	0.00	0.00	40.04	4.85
2509	5516	4.376146	CATAGCTTTAGAGAAGGCAGGAC	58.624	47.826	0.00	0.00	40.04	3.85
2510	5517	1.557371	AGCTTTAGAGAAGGCAGGACC	59.443	52.381	0.00	0.00	40.04	4.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	5.948162	CCAAGGTCACCTACTACTACTAACA	59.052	44.000	0.00	0.00	31.13	2.41
1	2	5.163571	GCCAAGGTCACCTACTACTACTAAC	60.164	48.000	0.00	0.00	31.13	2.34
2	3	4.952335	GCCAAGGTCACCTACTACTACTAA	59.048	45.833	0.00	0.00	31.13	2.24
67	68	7.386851	TCAGCTTTGCTACTTTAGTTCTGTAT	58.613	34.615	0.00	0.00	36.40	2.29
282	285	8.150296	AGGAAGAAGAAGAAGAAGAAGAAGAAG	58.850	37.037	0.00	0.00	0.00	2.85
283	286	8.028652	AGGAAGAAGAAGAAGAAGAAGAAGAA	57.971	34.615	0.00	0.00	0.00	2.52
284	287	7.508977	AGAGGAAGAAGAAGAAGAAGAAGAAGA	59.491	37.037	0.00	0.00	0.00	2.87
285	288	7.599998	CAGAGGAAGAAGAAGAAGAAGAAGAAG	59.400	40.741	0.00	0.00	0.00	2.85
286	289	7.070571	ACAGAGGAAGAAGAAGAAGAAGAAGAA	59.929	37.037	0.00	0.00	0.00	2.52
287	290	6.553100	ACAGAGGAAGAAGAAGAAGAAGAAGA	59.447	38.462	0.00	0.00	0.00	2.87
288	291	6.646240	CACAGAGGAAGAAGAAGAAGAAGAAG	59.354	42.308	0.00	0.00	0.00	2.85
289	292	6.098982	ACACAGAGGAAGAAGAAGAAGAAGAA	59.901	38.462	0.00	0.00	0.00	2.52
290	293	5.600484	ACACAGAGGAAGAAGAAGAAGAAGA	59.400	40.000	0.00	0.00	0.00	2.87
305	308	0.107263	TGCACTGCAAACACAGAGGA	60.107	50.000	0.00	0.00	40.25	3.71
379	389	0.808453	GACTGCCGGCGTGCTAAATA	60.808	55.000	24.85	2.90	0.00	1.40
425	446	4.141711	TGCATACAGAGAACCCCAATACTC	60.142	45.833	0.00	0.00	0.00	2.59
426	447	3.780294	TGCATACAGAGAACCCCAATACT	59.220	43.478	0.00	0.00	0.00	2.12
427	448	4.150897	TGCATACAGAGAACCCCAATAC	57.849	45.455	0.00	0.00	0.00	1.89
439	460	5.368145	AACAGAAGTTTGACTGCATACAGA	58.632	37.500	0.00	0.00	39.70	3.41
570	868	2.443957	CTTCGGCTTGTTCACGTGGC	62.444	60.000	17.00	10.52	0.00	5.01
877	2738	4.901849	TGTCTATTTATAGGCAGAGGCACT	59.098	41.667	0.05	0.00	39.84	4.40
916	2782	6.970613	CGCCGCACAATACTATTACTATATGA	59.029	38.462	0.00	0.00	0.00	2.15
919	2785	6.258230	ACGCCGCACAATACTATTACTATA	57.742	37.500	0.00	0.00	0.00	1.31
920	2786	5.130292	ACGCCGCACAATACTATTACTAT	57.870	39.130	0.00	0.00	0.00	2.12
921	2787	4.572985	ACGCCGCACAATACTATTACTA	57.427	40.909	0.00	0.00	0.00	1.82
922	2788	3.447918	ACGCCGCACAATACTATTACT	57.552	42.857	0.00	0.00	0.00	2.24
923	2789	5.005586	TGTTAACGCCGCACAATACTATTAC	59.994	40.000	0.26	0.00	0.00	1.89
924	2790	5.107824	TGTTAACGCCGCACAATACTATTA	58.892	37.500	0.26	0.00	0.00	0.98
943	2809	5.247084	TGCTAAGCTCGGGTAATTTTGTTA	58.753	37.500	0.00	0.00	0.00	2.41
957	2823	3.056607	GGATGGAGAGAGATGCTAAGCTC	60.057	52.174	0.00	0.00	39.22	4.09
1137	3003	3.262915	AGCTCTGGTAGTGCTTTCTCAAT	59.737	43.478	0.00	0.00	41.75	2.57
1244	3110	1.726533	GCTCGGCTTCGCTAGTAGGT	61.727	60.000	0.00	0.00	0.00	3.08
1466	3332	1.680522	CTGCACGGAGTAGAGGCCAT	61.681	60.000	5.01	0.00	41.61	4.40
1468	3334	2.052690	TCTGCACGGAGTAGAGGCC	61.053	63.158	0.00	0.00	41.61	5.19
1497	3363	1.005805	AGGTTAGTGATGGCCATGCAA	59.994	47.619	26.56	8.38	0.00	4.08
1502	3368	4.227300	ACTTGATAAGGTTAGTGATGGCCA	59.773	41.667	8.56	8.56	0.00	5.36
1726	3597	3.793129	GCACATTGAAAGGGTATGCGATG	60.793	47.826	0.00	0.00	0.00	3.84
1727	3598	2.358898	GCACATTGAAAGGGTATGCGAT	59.641	45.455	0.00	0.00	0.00	4.58
1832	3845	7.826690	TGAAAGGGTATAAGACAATTCTTTGC	58.173	34.615	0.00	0.00	39.17	3.68
1873	4057	9.334693	CATTGCAACTCTTCTTATTTAAGTGAC	57.665	33.333	0.00	0.00	34.93	3.67
1880	4064	9.502091	TGTAGTACATTGCAACTCTTCTTATTT	57.498	29.630	0.00	0.00	0.00	1.40
1881	4065	8.936864	GTGTAGTACATTGCAACTCTTCTTATT	58.063	33.333	6.21	0.00	0.00	1.40
1883	4067	7.667557	AGTGTAGTACATTGCAACTCTTCTTA	58.332	34.615	6.21	0.00	0.00	2.10
1884	4068	6.525629	AGTGTAGTACATTGCAACTCTTCTT	58.474	36.000	6.21	0.00	0.00	2.52
1885	4069	6.102897	AGTGTAGTACATTGCAACTCTTCT	57.897	37.500	6.21	0.00	0.00	2.85
1886	4070	6.787085	AAGTGTAGTACATTGCAACTCTTC	57.213	37.500	6.21	0.00	0.00	2.87
1889	4073	6.456988	GGCATAAGTGTAGTACATTGCAACTC	60.457	42.308	21.52	4.69	34.40	3.01
1890	4074	5.354234	GGCATAAGTGTAGTACATTGCAACT	59.646	40.000	21.52	0.00	34.40	3.16
1891	4075	5.123186	TGGCATAAGTGTAGTACATTGCAAC	59.877	40.000	21.52	12.17	34.40	4.17
1894	4326	4.876107	AGTGGCATAAGTGTAGTACATTGC	59.124	41.667	6.21	12.65	32.96	3.56
1913	4347	8.848474	TTCCTCAACTCTTCTTATTTAAGTGG	57.152	34.615	0.00	0.00	34.93	4.00
1936	4370	9.894783	GTCTTTATTGGGTTTACTTCTTCTTTC	57.105	33.333	0.00	0.00	0.00	2.62
1945	4379	9.802039	TTTGTATCAGTCTTTATTGGGTTTACT	57.198	29.630	0.00	0.00	0.00	2.24
2016	4456	1.379843	CCAGAAATTGGGTCCCCGG	60.380	63.158	5.13	0.00	43.75	5.73
2172	4613	5.933617	ACATTGTGATGACTAGCACCATAT	58.066	37.500	0.00	0.00	42.40	1.78
2215	4656	5.591643	TCGACGAGGAAGAAAATTTTCTG	57.408	39.130	29.31	19.82	46.22	3.02
2216	4657	7.185364	ACCTTCGACGAGGAAGAAAATTTTCT	61.185	38.462	24.62	24.62	44.93	2.52
2217	4658	5.049612	ACCTTCGACGAGGAAGAAAATTTTC	60.050	40.000	21.00	21.00	44.93	2.29
2219	4660	4.386711	ACCTTCGACGAGGAAGAAAATTT	58.613	39.130	10.18	0.00	44.93	1.82
2313	5316	9.205719	CCCAAAAGTAGAACTAAGTTTACTCTC	57.794	37.037	0.00	0.00	0.00	3.20
2324	5327	2.983898	AGCCCACCCAAAAGTAGAACTA	59.016	45.455	0.00	0.00	0.00	2.24
2329	5332	1.351017	TGAGAGCCCACCCAAAAGTAG	59.649	52.381	0.00	0.00	0.00	2.57
2333	5336	0.899717	GCATGAGAGCCCACCCAAAA	60.900	55.000	0.00	0.00	0.00	2.44
2357	5360	1.150536	TTCTTGGCCCAGCGTTCTT	59.849	52.632	0.00	0.00	0.00	2.52
2365	5368	1.002624	GGTGATCGTTCTTGGCCCA	60.003	57.895	0.00	0.00	0.00	5.36
2441	5444	4.705337	AAAAATTATGCGCGGTAAAGGA	57.295	36.364	8.83	0.00	0.00	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.