Multiple sequence alignment - TraesCS5A01G023500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G023500 chr5A 100.000 4985 0 0 1 4985 18788003 18792987 0.000000e+00 9206.0
1 TraesCS5A01G023500 chr5A 83.501 2388 343 38 1633 3979 18709652 18712029 0.000000e+00 2180.0
2 TraesCS5A01G023500 chr5A 82.467 1597 252 17 2345 3927 19106735 19108317 0.000000e+00 1373.0
3 TraesCS5A01G023500 chr5A 84.465 1178 166 11 995 2161 19105596 19106767 0.000000e+00 1146.0
4 TraesCS5A01G023500 chr5A 76.165 558 115 16 3993 4541 567535372 567534824 1.370000e-70 278.0
5 TraesCS5A01G023500 chr5A 87.838 74 9 0 4016 4089 568707198 568707271 2.470000e-13 87.9
6 TraesCS5A01G023500 chr5D 93.837 2872 118 17 397 3259 27457687 27460508 0.000000e+00 4268.0
7 TraesCS5A01G023500 chr5D 84.143 2636 381 24 991 3599 27437062 27439687 0.000000e+00 2518.0
8 TraesCS5A01G023500 chr5D 85.951 1630 210 14 2364 3982 27432599 27434220 0.000000e+00 1724.0
9 TraesCS5A01G023500 chr5D 82.603 1598 248 18 2345 3927 28481719 28483301 0.000000e+00 1384.0
10 TraesCS5A01G023500 chr5D 82.360 1610 247 29 995 2580 27399287 27400883 0.000000e+00 1365.0
11 TraesCS5A01G023500 chr5D 90.808 990 72 5 3993 4982 27465174 27466144 0.000000e+00 1306.0
12 TraesCS5A01G023500 chr5D 85.222 1218 155 20 2779 3981 27310143 27311350 0.000000e+00 1229.0
13 TraesCS5A01G023500 chr5D 95.109 736 36 0 3244 3979 27460692 27461427 0.000000e+00 1160.0
14 TraesCS5A01G023500 chr5D 83.821 1230 175 18 995 2209 28480580 28481800 0.000000e+00 1147.0
15 TraesCS5A01G023500 chr5D 84.030 933 125 18 3071 3982 27426834 27427763 0.000000e+00 876.0
16 TraesCS5A01G023500 chr5D 83.864 880 121 14 1044 1905 27278997 27279873 0.000000e+00 819.0
17 TraesCS5A01G023500 chr5D 87.755 196 22 2 994 1188 27431248 27431442 1.400000e-55 228.0
18 TraesCS5A01G023500 chr5B 84.092 3030 413 46 993 3982 19575802 19578802 0.000000e+00 2861.0
19 TraesCS5A01G023500 chr5B 84.020 3035 403 51 994 3981 19589968 19592967 0.000000e+00 2843.0
20 TraesCS5A01G023500 chr5B 86.737 1885 227 18 2114 3979 19672399 19674279 0.000000e+00 2074.0
21 TraesCS5A01G023500 chr5B 81.262 1062 170 16 994 2046 19629444 19630485 0.000000e+00 832.0
22 TraesCS5A01G023500 chr5B 89.963 538 51 2 3449 3983 19678065 19678602 0.000000e+00 691.0
23 TraesCS5A01G023500 chr5B 83.092 414 54 12 991 1388 19677651 19678064 3.670000e-96 363.0
24 TraesCS5A01G023500 chr3D 78.165 3041 584 68 993 3983 12809335 12806325 0.000000e+00 1864.0
25 TraesCS5A01G023500 chr3D 80.359 1670 290 28 2335 3982 12751423 12749770 0.000000e+00 1232.0
26 TraesCS5A01G023500 chr3D 79.760 998 183 15 2334 3323 12505237 12504251 0.000000e+00 706.0
27 TraesCS5A01G023500 chr3D 79.092 837 151 17 993 1810 12803468 12802637 5.640000e-154 555.0
28 TraesCS5A01G023500 chr3D 75.929 1130 232 29 993 2098 12506442 12505329 1.220000e-150 544.0
29 TraesCS5A01G023500 chr3D 76.210 992 216 17 2343 3324 12633852 12634833 1.600000e-139 507.0
30 TraesCS5A01G023500 chr3D 83.333 132 17 4 1 131 288295260 288295133 3.150000e-22 117.0
31 TraesCS5A01G023500 chr1B 88.700 1000 112 1 3986 4985 631070980 631069982 0.000000e+00 1219.0
32 TraesCS5A01G023500 chr1B 87.405 921 100 10 3078 3983 631076302 631075383 0.000000e+00 1044.0
33 TraesCS5A01G023500 chr3A 75.198 1012 196 30 3993 4971 726546638 726547627 1.280000e-115 427.0
34 TraesCS5A01G023500 chr3A 77.000 600 118 18 3993 4584 742225018 742225605 4.810000e-85 326.0
35 TraesCS5A01G023500 chr3B 74.681 1019 190 46 3993 4971 100380116 100379126 1.680000e-104 390.0
36 TraesCS5A01G023500 chr2D 78.135 622 117 13 4362 4971 502483319 502482705 1.310000e-100 377.0
37 TraesCS5A01G023500 chr2D 79.339 121 17 7 48 162 43344074 43344192 1.490000e-10 78.7
38 TraesCS5A01G023500 chr2B 76.115 762 145 29 4234 4971 145359136 145358388 1.020000e-96 364.0
39 TraesCS5A01G023500 chr2B 75.915 519 109 14 4043 4552 23171346 23171857 8.280000e-63 252.0
40 TraesCS5A01G023500 chr2B 83.146 89 10 5 78 164 546902185 546902100 5.350000e-10 76.8
41 TraesCS5A01G023500 chr6D 77.554 646 111 23 4331 4971 149005015 149004399 4.740000e-95 359.0
42 TraesCS5A01G023500 chr6D 74.856 871 165 38 4110 4971 76059338 76058513 3.690000e-91 346.0
43 TraesCS5A01G023500 chr6D 81.593 364 64 3 4610 4971 48860548 48860186 1.050000e-76 298.0
44 TraesCS5A01G023500 chr4D 77.586 522 103 12 4042 4553 275335250 275335767 2.250000e-78 303.0
45 TraesCS5A01G023500 chrUn 75.734 511 112 10 4049 4552 16313247 16312742 3.850000e-61 246.0
46 TraesCS5A01G023500 chrUn 75.629 517 114 10 4043 4552 213661734 213662245 3.850000e-61 246.0
47 TraesCS5A01G023500 chrUn 86.364 88 10 2 76 162 79260406 79260492 1.480000e-15 95.3
48 TraesCS5A01G023500 chrUn 86.364 88 10 2 76 162 79291759 79291845 1.480000e-15 95.3
49 TraesCS5A01G023500 chr7A 76.170 470 94 16 4011 4471 731888672 731888212 1.080000e-56 231.0
50 TraesCS5A01G023500 chr7A 90.566 159 12 3 3 160 675134928 675134772 1.820000e-49 207.0
51 TraesCS5A01G023500 chr7D 90.385 104 8 2 59 161 617733153 617733051 8.700000e-28 135.0
52 TraesCS5A01G023500 chr1A 85.185 81 10 2 85 164 576076660 576076739 1.150000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G023500 chr5A 18788003 18792987 4984 False 9206.000000 9206 100.000000 1 4985 1 chr5A.!!$F2 4984
1 TraesCS5A01G023500 chr5A 18709652 18712029 2377 False 2180.000000 2180 83.501000 1633 3979 1 chr5A.!!$F1 2346
2 TraesCS5A01G023500 chr5A 19105596 19108317 2721 False 1259.500000 1373 83.466000 995 3927 2 chr5A.!!$F4 2932
3 TraesCS5A01G023500 chr5A 567534824 567535372 548 True 278.000000 278 76.165000 3993 4541 1 chr5A.!!$R1 548
4 TraesCS5A01G023500 chr5D 27457687 27466144 8457 False 2244.666667 4268 93.251333 397 4982 3 chr5D.!!$F5 4585
5 TraesCS5A01G023500 chr5D 27399287 27400883 1596 False 1365.000000 1365 82.360000 995 2580 1 chr5D.!!$F3 1585
6 TraesCS5A01G023500 chr5D 27426834 27439687 12853 False 1336.500000 2518 85.469750 991 3982 4 chr5D.!!$F4 2991
7 TraesCS5A01G023500 chr5D 28480580 28483301 2721 False 1265.500000 1384 83.212000 995 3927 2 chr5D.!!$F6 2932
8 TraesCS5A01G023500 chr5D 27310143 27311350 1207 False 1229.000000 1229 85.222000 2779 3981 1 chr5D.!!$F2 1202
9 TraesCS5A01G023500 chr5D 27278997 27279873 876 False 819.000000 819 83.864000 1044 1905 1 chr5D.!!$F1 861
10 TraesCS5A01G023500 chr5B 19575802 19578802 3000 False 2861.000000 2861 84.092000 993 3982 1 chr5B.!!$F1 2989
11 TraesCS5A01G023500 chr5B 19589968 19592967 2999 False 2843.000000 2843 84.020000 994 3981 1 chr5B.!!$F2 2987
12 TraesCS5A01G023500 chr5B 19672399 19678602 6203 False 1042.666667 2074 86.597333 991 3983 3 chr5B.!!$F4 2992
13 TraesCS5A01G023500 chr5B 19629444 19630485 1041 False 832.000000 832 81.262000 994 2046 1 chr5B.!!$F3 1052
14 TraesCS5A01G023500 chr3D 12749770 12751423 1653 True 1232.000000 1232 80.359000 2335 3982 1 chr3D.!!$R1 1647
15 TraesCS5A01G023500 chr3D 12802637 12809335 6698 True 1209.500000 1864 78.628500 993 3983 2 chr3D.!!$R4 2990
16 TraesCS5A01G023500 chr3D 12504251 12506442 2191 True 625.000000 706 77.844500 993 3323 2 chr3D.!!$R3 2330
17 TraesCS5A01G023500 chr3D 12633852 12634833 981 False 507.000000 507 76.210000 2343 3324 1 chr3D.!!$F1 981
18 TraesCS5A01G023500 chr1B 631069982 631070980 998 True 1219.000000 1219 88.700000 3986 4985 1 chr1B.!!$R1 999
19 TraesCS5A01G023500 chr1B 631075383 631076302 919 True 1044.000000 1044 87.405000 3078 3983 1 chr1B.!!$R2 905
20 TraesCS5A01G023500 chr3A 726546638 726547627 989 False 427.000000 427 75.198000 3993 4971 1 chr3A.!!$F1 978
21 TraesCS5A01G023500 chr3A 742225018 742225605 587 False 326.000000 326 77.000000 3993 4584 1 chr3A.!!$F2 591
22 TraesCS5A01G023500 chr3B 100379126 100380116 990 True 390.000000 390 74.681000 3993 4971 1 chr3B.!!$R1 978
23 TraesCS5A01G023500 chr2D 502482705 502483319 614 True 377.000000 377 78.135000 4362 4971 1 chr2D.!!$R1 609
24 TraesCS5A01G023500 chr2B 145358388 145359136 748 True 364.000000 364 76.115000 4234 4971 1 chr2B.!!$R1 737
25 TraesCS5A01G023500 chr2B 23171346 23171857 511 False 252.000000 252 75.915000 4043 4552 1 chr2B.!!$F1 509
26 TraesCS5A01G023500 chr6D 149004399 149005015 616 True 359.000000 359 77.554000 4331 4971 1 chr6D.!!$R3 640
27 TraesCS5A01G023500 chr6D 76058513 76059338 825 True 346.000000 346 74.856000 4110 4971 1 chr6D.!!$R2 861
28 TraesCS5A01G023500 chr4D 275335250 275335767 517 False 303.000000 303 77.586000 4042 4553 1 chr4D.!!$F1 511
29 TraesCS5A01G023500 chrUn 16312742 16313247 505 True 246.000000 246 75.734000 4049 4552 1 chrUn.!!$R1 503
30 TraesCS5A01G023500 chrUn 213661734 213662245 511 False 246.000000 246 75.629000 4043 4552 1 chrUn.!!$F3 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 377 0.036388 TCCATTTGTCTCCGCTGGTC 60.036 55.0 0.00 0.00 0.00 4.02 F
388 389 0.039165 CGCTGGTCCAAAAAGGCTTC 60.039 55.0 0.00 0.00 37.29 3.86 F
822 829 0.179056 ATATGGCCGAACGTTCCTGG 60.179 55.0 22.07 18.51 0.00 4.45 F
1161 4588 0.379669 GGCCATGTCATCAAGCTTCG 59.620 55.0 0.00 0.00 0.00 3.79 F
2941 6482 0.698238 TGGGTCCATTCCAGAACCTG 59.302 55.0 0.00 0.00 42.03 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2074 5615 1.358152 TTCCAAGTCCCTGGTGGTAG 58.642 55.000 1.46 0.00 37.74 3.18 R
2119 5660 3.215151 CATTGAGCTGATTCAGGCTGAT 58.785 45.455 19.50 8.57 39.05 2.90 R
2775 6316 1.002134 CCCGGTGAGCTGGTTTGAT 60.002 57.895 0.00 0.00 39.55 2.57 R
3039 6580 3.944422 AAACTGTTGTTACTGAGCACG 57.056 42.857 0.00 0.00 34.96 5.34 R
4828 17623 0.249280 TGGCACGCGTCGATATTGAT 60.249 50.000 9.86 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 6.884280 ACAAGAAAAGAGACAACCTATTGG 57.116 37.500 0.00 0.00 40.42 3.16
50 51 5.770162 ACAAGAAAAGAGACAACCTATTGGG 59.230 40.000 0.00 0.00 40.42 4.12
51 52 4.923415 AGAAAAGAGACAACCTATTGGGG 58.077 43.478 0.00 0.00 40.42 4.96
73 74 1.756950 GGGGGCGGGGAAAATTCTC 60.757 63.158 0.00 0.00 0.00 2.87
74 75 1.000145 GGGGCGGGGAAAATTCTCA 60.000 57.895 0.00 0.00 0.00 3.27
77 78 1.320344 GGCGGGGAAAATTCTCACCC 61.320 60.000 0.00 0.00 41.41 4.61
80 81 2.882170 GGGAAAATTCTCACCCCCG 58.118 57.895 0.00 0.00 36.65 5.73
83 84 0.526211 GAAAATTCTCACCCCCGTGC 59.474 55.000 0.00 0.00 40.04 5.34
84 85 0.898326 AAAATTCTCACCCCCGTGCC 60.898 55.000 0.00 0.00 40.04 5.01
85 86 2.075355 AAATTCTCACCCCCGTGCCA 62.075 55.000 0.00 0.00 40.04 4.92
87 88 2.075355 ATTCTCACCCCCGTGCCAAA 62.075 55.000 0.00 0.00 40.04 3.28
88 89 2.035626 CTCACCCCCGTGCCAAAT 59.964 61.111 0.00 0.00 40.04 2.32
90 91 0.322997 CTCACCCCCGTGCCAAATAA 60.323 55.000 0.00 0.00 40.04 1.40
91 92 0.333312 TCACCCCCGTGCCAAATAAT 59.667 50.000 0.00 0.00 40.04 1.28
94 95 0.383949 CCCCCGTGCCAAATAATTCG 59.616 55.000 0.00 0.00 0.00 3.34
95 96 0.248866 CCCCGTGCCAAATAATTCGC 60.249 55.000 0.00 0.00 0.00 4.70
96 97 0.248866 CCCGTGCCAAATAATTCGCC 60.249 55.000 0.00 0.00 0.00 5.54
99 100 0.248866 GTGCCAAATAATTCGCCGGG 60.249 55.000 2.18 0.00 0.00 5.73
100 101 1.299850 GCCAAATAATTCGCCGGGC 60.300 57.895 9.54 9.54 0.00 6.13
101 102 1.362355 CCAAATAATTCGCCGGGCC 59.638 57.895 14.55 0.00 0.00 5.80
102 103 1.388065 CCAAATAATTCGCCGGGCCA 61.388 55.000 14.55 0.00 0.00 5.36
103 104 0.457851 CAAATAATTCGCCGGGCCAA 59.542 50.000 14.55 7.64 0.00 4.52
104 105 0.458260 AAATAATTCGCCGGGCCAAC 59.542 50.000 14.55 0.00 0.00 3.77
117 118 3.636231 CCAACCCCACGAGGCTGA 61.636 66.667 0.00 0.00 0.00 4.26
118 119 2.429930 CAACCCCACGAGGCTGAA 59.570 61.111 0.00 0.00 0.00 3.02
119 120 1.228124 CAACCCCACGAGGCTGAAA 60.228 57.895 0.00 0.00 0.00 2.69
121 122 0.106419 AACCCCACGAGGCTGAAAAA 60.106 50.000 0.00 0.00 0.00 1.94
136 137 2.961424 AAAAATGCCTCCTGACGGG 58.039 52.632 0.00 0.00 0.00 5.28
142 143 2.358737 CCTCCTGACGGGCACAAC 60.359 66.667 0.00 0.00 34.39 3.32
143 144 2.738521 CTCCTGACGGGCACAACG 60.739 66.667 0.00 0.00 34.39 4.10
144 145 4.308458 TCCTGACGGGCACAACGG 62.308 66.667 0.00 0.00 35.23 4.44
151 152 4.329545 GGGCACAACGGCTGGAGA 62.330 66.667 0.00 0.00 40.90 3.71
152 153 2.045926 GGCACAACGGCTGGAGAT 60.046 61.111 0.00 0.00 37.17 2.75
154 155 3.044059 GCACAACGGCTGGAGATGC 62.044 63.158 0.00 0.00 0.00 3.91
155 156 1.376424 CACAACGGCTGGAGATGCT 60.376 57.895 0.00 0.00 0.00 3.79
156 157 1.078848 ACAACGGCTGGAGATGCTC 60.079 57.895 0.00 0.00 0.00 4.26
158 159 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
160 161 0.749649 ACGGCTGGAGATGCTCTTAG 59.250 55.000 0.00 0.00 0.00 2.18
161 162 0.599728 CGGCTGGAGATGCTCTTAGC 60.600 60.000 12.47 12.47 42.82 3.09
162 163 0.758123 GGCTGGAGATGCTCTTAGCT 59.242 55.000 17.10 0.00 42.97 3.32
163 164 1.140652 GGCTGGAGATGCTCTTAGCTT 59.859 52.381 17.10 0.00 42.97 3.74
164 165 2.482864 GCTGGAGATGCTCTTAGCTTC 58.517 52.381 0.00 6.68 42.97 3.86
165 166 2.158986 GCTGGAGATGCTCTTAGCTTCA 60.159 50.000 14.79 0.00 44.87 3.02
166 167 3.719924 CTGGAGATGCTCTTAGCTTCAG 58.280 50.000 14.79 0.00 44.87 3.02
169 170 4.098654 TGGAGATGCTCTTAGCTTCAGTAC 59.901 45.833 14.79 0.00 44.87 2.73
170 171 4.098654 GGAGATGCTCTTAGCTTCAGTACA 59.901 45.833 14.79 0.00 44.87 2.90
172 173 4.952957 AGATGCTCTTAGCTTCAGTACAGA 59.047 41.667 14.79 0.00 44.87 3.41
175 176 4.201960 TGCTCTTAGCTTCAGTACAGATCG 60.202 45.833 0.00 0.00 42.97 3.69
176 177 4.035792 GCTCTTAGCTTCAGTACAGATCGA 59.964 45.833 0.00 0.00 38.45 3.59
177 178 5.743026 TCTTAGCTTCAGTACAGATCGAG 57.257 43.478 0.00 0.00 0.00 4.04
178 179 4.576873 TCTTAGCTTCAGTACAGATCGAGG 59.423 45.833 0.00 0.00 0.00 4.63
179 180 3.006112 AGCTTCAGTACAGATCGAGGA 57.994 47.619 0.00 0.00 0.00 3.71
180 181 3.357203 AGCTTCAGTACAGATCGAGGAA 58.643 45.455 0.00 0.00 0.00 3.36
181 182 3.380004 AGCTTCAGTACAGATCGAGGAAG 59.620 47.826 0.00 0.00 34.81 3.46
182 183 3.378742 GCTTCAGTACAGATCGAGGAAGA 59.621 47.826 13.13 0.00 33.84 2.87
183 184 4.497340 GCTTCAGTACAGATCGAGGAAGAG 60.497 50.000 13.13 0.00 33.84 2.85
184 185 2.946329 TCAGTACAGATCGAGGAAGAGC 59.054 50.000 0.00 0.00 0.00 4.09
185 186 2.948979 CAGTACAGATCGAGGAAGAGCT 59.051 50.000 0.00 0.00 37.36 4.09
186 187 4.130857 CAGTACAGATCGAGGAAGAGCTA 58.869 47.826 0.00 0.00 34.82 3.32
187 188 4.213270 CAGTACAGATCGAGGAAGAGCTAG 59.787 50.000 0.00 0.00 34.82 3.42
188 189 3.569194 ACAGATCGAGGAAGAGCTAGA 57.431 47.619 0.00 0.00 34.82 2.43
190 191 3.820467 ACAGATCGAGGAAGAGCTAGATG 59.180 47.826 0.00 0.00 34.82 2.90
192 193 1.988293 TCGAGGAAGAGCTAGATGGG 58.012 55.000 0.00 0.00 0.00 4.00
194 195 1.715785 GAGGAAGAGCTAGATGGGCT 58.284 55.000 0.00 0.00 43.26 5.19
195 196 2.815963 CGAGGAAGAGCTAGATGGGCTA 60.816 54.545 0.00 0.00 40.40 3.93
206 207 2.122768 AGATGGGCTAGAGTTGAAGGG 58.877 52.381 0.00 0.00 0.00 3.95
207 208 2.119495 GATGGGCTAGAGTTGAAGGGA 58.881 52.381 0.00 0.00 0.00 4.20
208 209 2.038863 TGGGCTAGAGTTGAAGGGAA 57.961 50.000 0.00 0.00 0.00 3.97
209 210 2.344592 TGGGCTAGAGTTGAAGGGAAA 58.655 47.619 0.00 0.00 0.00 3.13
210 211 2.919602 TGGGCTAGAGTTGAAGGGAAAT 59.080 45.455 0.00 0.00 0.00 2.17
212 213 3.282885 GGCTAGAGTTGAAGGGAAATGG 58.717 50.000 0.00 0.00 0.00 3.16
214 215 4.336280 GCTAGAGTTGAAGGGAAATGGTT 58.664 43.478 0.00 0.00 0.00 3.67
215 216 4.396478 GCTAGAGTTGAAGGGAAATGGTTC 59.604 45.833 0.00 0.00 0.00 3.62
217 218 4.803452 AGAGTTGAAGGGAAATGGTTCAA 58.197 39.130 0.00 0.00 37.75 2.69
218 219 4.829492 AGAGTTGAAGGGAAATGGTTCAAG 59.171 41.667 0.00 0.00 40.06 3.02
219 220 4.803452 AGTTGAAGGGAAATGGTTCAAGA 58.197 39.130 0.00 0.00 40.06 3.02
220 221 4.829492 AGTTGAAGGGAAATGGTTCAAGAG 59.171 41.667 0.00 0.00 40.06 2.85
221 222 4.722526 TGAAGGGAAATGGTTCAAGAGA 57.277 40.909 0.00 0.00 35.25 3.10
222 223 5.060427 TGAAGGGAAATGGTTCAAGAGAA 57.940 39.130 0.00 0.00 35.25 2.87
224 225 5.163099 TGAAGGGAAATGGTTCAAGAGAAGA 60.163 40.000 0.00 0.00 35.25 2.87
225 226 5.527026 AGGGAAATGGTTCAAGAGAAGAT 57.473 39.130 0.00 0.00 35.25 2.40
227 228 6.657875 AGGGAAATGGTTCAAGAGAAGATAG 58.342 40.000 0.00 0.00 35.25 2.08
229 230 5.007136 GGAAATGGTTCAAGAGAAGATAGCG 59.993 44.000 0.00 0.00 35.25 4.26
230 231 3.526931 TGGTTCAAGAGAAGATAGCGG 57.473 47.619 0.00 0.00 33.63 5.52
232 233 4.021229 TGGTTCAAGAGAAGATAGCGGTA 58.979 43.478 0.00 0.00 33.63 4.02
233 234 4.098044 TGGTTCAAGAGAAGATAGCGGTAG 59.902 45.833 0.00 0.00 33.63 3.18
235 236 5.275494 GTTCAAGAGAAGATAGCGGTAGAC 58.725 45.833 0.00 0.00 33.63 2.59
236 237 4.524053 TCAAGAGAAGATAGCGGTAGACA 58.476 43.478 0.00 0.00 0.00 3.41
237 238 4.948004 TCAAGAGAAGATAGCGGTAGACAA 59.052 41.667 0.00 0.00 0.00 3.18
239 240 5.699097 AGAGAAGATAGCGGTAGACAATC 57.301 43.478 0.00 0.00 0.00 2.67
240 241 5.381757 AGAGAAGATAGCGGTAGACAATCT 58.618 41.667 0.00 5.35 0.00 2.40
241 242 5.830991 AGAGAAGATAGCGGTAGACAATCTT 59.169 40.000 8.83 8.83 39.09 2.40
242 243 6.016610 AGAGAAGATAGCGGTAGACAATCTTC 60.017 42.308 21.29 21.29 46.70 2.87
243 244 5.833082 GAAGATAGCGGTAGACAATCTTCA 58.167 41.667 22.83 0.00 46.09 3.02
245 246 5.777802 AGATAGCGGTAGACAATCTTCATG 58.222 41.667 0.00 0.00 0.00 3.07
246 247 3.895232 AGCGGTAGACAATCTTCATGT 57.105 42.857 0.00 0.00 0.00 3.21
247 248 3.786635 AGCGGTAGACAATCTTCATGTC 58.213 45.455 0.00 0.00 45.94 3.06
248 249 2.866762 GCGGTAGACAATCTTCATGTCC 59.133 50.000 3.23 0.00 46.60 4.02
249 250 3.458189 CGGTAGACAATCTTCATGTCCC 58.542 50.000 3.23 0.00 46.60 4.46
251 252 4.443457 CGGTAGACAATCTTCATGTCCCAT 60.443 45.833 3.23 0.00 46.60 4.00
252 253 4.818546 GGTAGACAATCTTCATGTCCCATG 59.181 45.833 3.23 0.00 46.60 3.66
253 254 4.581309 AGACAATCTTCATGTCCCATGT 57.419 40.909 4.30 0.00 46.60 3.21
254 255 4.927049 AGACAATCTTCATGTCCCATGTT 58.073 39.130 4.30 0.00 46.60 2.71
256 257 3.765511 ACAATCTTCATGTCCCATGTTGG 59.234 43.478 4.30 0.00 37.25 3.77
258 259 3.805066 TCTTCATGTCCCATGTTGGAA 57.195 42.857 4.30 0.00 40.96 3.53
259 260 3.420893 TCTTCATGTCCCATGTTGGAAC 58.579 45.455 4.30 0.00 40.96 3.62
260 261 2.967745 TCATGTCCCATGTTGGAACA 57.032 45.000 4.30 0.00 40.96 3.18
261 262 2.513753 TCATGTCCCATGTTGGAACAC 58.486 47.619 4.30 0.00 40.96 3.32
262 263 1.199789 CATGTCCCATGTTGGAACACG 59.800 52.381 0.00 0.00 40.96 4.49
263 264 0.470341 TGTCCCATGTTGGAACACGA 59.530 50.000 0.00 0.00 40.96 4.35
265 266 0.250553 TCCCATGTTGGAACACGACC 60.251 55.000 0.00 0.00 40.96 4.79
266 267 1.241315 CCCATGTTGGAACACGACCC 61.241 60.000 0.00 0.00 40.96 4.46
267 268 0.536233 CCATGTTGGAACACGACCCA 60.536 55.000 0.00 0.00 40.96 4.51
268 269 1.533625 CATGTTGGAACACGACCCAT 58.466 50.000 0.00 0.00 42.51 4.00
269 270 2.616765 CCATGTTGGAACACGACCCATA 60.617 50.000 0.00 0.00 40.96 2.74
270 271 2.465860 TGTTGGAACACGACCCATAG 57.534 50.000 0.00 0.00 39.29 2.23
275 276 2.167693 TGGAACACGACCCATAGTCATC 59.832 50.000 0.00 0.00 46.69 2.92
276 277 2.460918 GAACACGACCCATAGTCATCG 58.539 52.381 0.00 0.00 46.69 3.84
279 280 1.471119 ACGACCCATAGTCATCGTGT 58.529 50.000 0.00 0.00 46.69 4.49
281 282 3.018856 ACGACCCATAGTCATCGTGTTA 58.981 45.455 0.00 0.00 46.69 2.41
284 285 4.608951 GACCCATAGTCATCGTGTTAGAC 58.391 47.826 0.00 0.00 45.55 2.59
285 286 4.279145 ACCCATAGTCATCGTGTTAGACT 58.721 43.478 0.00 0.00 44.25 3.24
287 288 5.531659 ACCCATAGTCATCGTGTTAGACTAG 59.468 44.000 0.00 0.00 45.06 2.57
288 289 5.763698 CCCATAGTCATCGTGTTAGACTAGA 59.236 44.000 0.00 0.00 45.06 2.43
289 290 6.262496 CCCATAGTCATCGTGTTAGACTAGAA 59.738 42.308 0.00 0.00 45.06 2.10
290 291 7.356540 CCATAGTCATCGTGTTAGACTAGAAG 58.643 42.308 0.00 0.00 45.06 2.85
291 292 5.238006 AGTCATCGTGTTAGACTAGAAGC 57.762 43.478 0.00 0.00 40.59 3.86
292 293 4.029704 GTCATCGTGTTAGACTAGAAGCG 58.970 47.826 0.00 0.00 0.00 4.68
293 294 2.539346 TCGTGTTAGACTAGAAGCGC 57.461 50.000 0.00 0.00 0.00 5.92
295 296 2.159558 TCGTGTTAGACTAGAAGCGCAG 60.160 50.000 11.47 0.00 0.00 5.18
299 300 0.456221 TAGACTAGAAGCGCAGTGGC 59.544 55.000 11.47 0.00 0.00 5.01
306 307 3.267974 AGCGCAGTGGCTTAAAGC 58.732 55.556 11.47 0.00 41.39 3.51
318 319 3.364889 GCTTAAAGCCTTCACCGTTTT 57.635 42.857 0.00 0.00 34.48 2.43
321 322 4.735283 GCTTAAAGCCTTCACCGTTTTTCA 60.735 41.667 0.00 0.00 34.48 2.69
322 323 5.523438 TTAAAGCCTTCACCGTTTTTCAT 57.477 34.783 0.00 0.00 0.00 2.57
323 324 3.643159 AAGCCTTCACCGTTTTTCATC 57.357 42.857 0.00 0.00 0.00 2.92
327 328 3.305335 GCCTTCACCGTTTTTCATCATGT 60.305 43.478 0.00 0.00 0.00 3.21
328 329 4.795962 GCCTTCACCGTTTTTCATCATGTT 60.796 41.667 0.00 0.00 0.00 2.71
329 330 4.681025 CCTTCACCGTTTTTCATCATGTTG 59.319 41.667 0.00 0.00 0.00 3.33
330 331 4.909696 TCACCGTTTTTCATCATGTTGT 57.090 36.364 3.76 0.00 0.00 3.32
331 332 6.378710 TTCACCGTTTTTCATCATGTTGTA 57.621 33.333 3.76 0.00 0.00 2.41
332 333 5.753744 TCACCGTTTTTCATCATGTTGTAC 58.246 37.500 3.76 0.00 0.00 2.90
333 334 5.297029 TCACCGTTTTTCATCATGTTGTACA 59.703 36.000 3.76 0.00 0.00 2.90
334 335 6.016693 TCACCGTTTTTCATCATGTTGTACAT 60.017 34.615 0.00 0.00 39.91 2.29
335 336 7.173390 TCACCGTTTTTCATCATGTTGTACATA 59.827 33.333 0.00 0.00 36.53 2.29
336 337 7.967854 CACCGTTTTTCATCATGTTGTACATAT 59.032 33.333 0.00 0.00 36.53 1.78
337 338 8.519526 ACCGTTTTTCATCATGTTGTACATATT 58.480 29.630 0.00 0.00 36.53 1.28
338 339 9.995957 CCGTTTTTCATCATGTTGTACATATTA 57.004 29.630 0.00 0.00 36.53 0.98
348 349 9.337396 TCATGTTGTACATATTAATGTCTTCCC 57.663 33.333 0.00 0.00 42.92 3.97
350 351 9.920946 ATGTTGTACATATTAATGTCTTCCCTT 57.079 29.630 0.00 0.00 42.92 3.95
351 352 9.391006 TGTTGTACATATTAATGTCTTCCCTTC 57.609 33.333 0.00 0.00 42.92 3.46
373 374 3.641437 TTTTTCCATTTGTCTCCGCTG 57.359 42.857 0.00 0.00 0.00 5.18
375 376 0.400213 TTCCATTTGTCTCCGCTGGT 59.600 50.000 0.00 0.00 0.00 4.00
376 377 0.036388 TCCATTTGTCTCCGCTGGTC 60.036 55.000 0.00 0.00 0.00 4.02
377 378 1.026718 CCATTTGTCTCCGCTGGTCC 61.027 60.000 0.00 0.00 0.00 4.46
378 379 0.321564 CATTTGTCTCCGCTGGTCCA 60.322 55.000 0.00 0.00 0.00 4.02
379 380 0.400213 ATTTGTCTCCGCTGGTCCAA 59.600 50.000 0.00 0.00 0.00 3.53
380 381 0.181587 TTTGTCTCCGCTGGTCCAAA 59.818 50.000 0.00 0.00 0.00 3.28
381 382 0.181587 TTGTCTCCGCTGGTCCAAAA 59.818 50.000 0.00 0.00 0.00 2.44
382 383 0.181587 TGTCTCCGCTGGTCCAAAAA 59.818 50.000 0.00 0.00 0.00 1.94
384 385 0.250727 TCTCCGCTGGTCCAAAAAGG 60.251 55.000 0.00 0.00 39.47 3.11
385 386 1.866853 CTCCGCTGGTCCAAAAAGGC 61.867 60.000 0.00 0.00 37.29 4.35
387 388 1.463553 CCGCTGGTCCAAAAAGGCTT 61.464 55.000 0.00 0.00 37.29 4.35
388 389 0.039165 CGCTGGTCCAAAAAGGCTTC 60.039 55.000 0.00 0.00 37.29 3.86
392 393 2.489722 CTGGTCCAAAAAGGCTTCTAGC 59.510 50.000 0.00 0.00 41.46 3.42
393 394 2.158534 TGGTCCAAAAAGGCTTCTAGCA 60.159 45.455 0.00 0.00 44.75 3.49
395 396 2.095718 GTCCAAAAAGGCTTCTAGCACG 60.096 50.000 0.00 0.00 44.75 5.34
398 399 1.443802 AAAAGGCTTCTAGCACGCTC 58.556 50.000 0.00 0.00 44.75 5.03
442 445 4.462483 TCCACAAGATTAGTTTCCATTGCC 59.538 41.667 0.00 0.00 0.00 4.52
464 467 6.499699 TGCCTATCTATGGACATCAGAATTCT 59.500 38.462 0.88 0.88 0.00 2.40
531 535 2.045926 GGTGAGGCCGTGCTTCAT 60.046 61.111 12.41 0.00 45.67 2.57
584 591 3.249080 CAGCAAGTGGATTTGGCAAAAAG 59.751 43.478 17.70 3.43 0.00 2.27
588 595 5.008911 GCAAGTGGATTTGGCAAAAAGAAAT 59.991 36.000 17.70 0.00 0.00 2.17
604 611 8.946085 CAAAAAGAAATAGTGTACATAGAGGCA 58.054 33.333 0.00 0.00 0.00 4.75
607 614 8.894768 AAGAAATAGTGTACATAGAGGCAATC 57.105 34.615 0.00 0.00 0.00 2.67
664 671 0.730834 CTCAAGTCCAGAGTGCGACG 60.731 60.000 0.00 0.00 34.10 5.12
682 689 4.703424 CGACGTGCATATACAACAAACAA 58.297 39.130 0.00 0.00 0.00 2.83
683 690 5.320723 CGACGTGCATATACAACAAACAAT 58.679 37.500 0.00 0.00 0.00 2.71
706 713 4.322080 TTGAGTAGTGACCTTGACAGTG 57.678 45.455 0.00 0.00 0.00 3.66
747 754 3.810743 GCAACTCCCACCACATTCTAGTT 60.811 47.826 0.00 0.00 0.00 2.24
748 755 3.983044 ACTCCCACCACATTCTAGTTC 57.017 47.619 0.00 0.00 0.00 3.01
749 756 3.521727 ACTCCCACCACATTCTAGTTCT 58.478 45.455 0.00 0.00 0.00 3.01
751 758 4.712337 ACTCCCACCACATTCTAGTTCTAG 59.288 45.833 0.83 0.83 0.00 2.43
781 788 1.442769 CATGACTGGGACTTTGACCG 58.557 55.000 0.00 0.00 0.00 4.79
809 816 2.423577 CGTGGGGCTTAGTAATATGGC 58.576 52.381 1.59 1.59 0.00 4.40
810 817 2.791655 GTGGGGCTTAGTAATATGGCC 58.208 52.381 17.24 17.24 43.32 5.36
811 818 1.349688 TGGGGCTTAGTAATATGGCCG 59.650 52.381 18.36 0.00 44.73 6.13
812 819 1.626825 GGGGCTTAGTAATATGGCCGA 59.373 52.381 18.36 0.00 44.73 5.54
813 820 2.039348 GGGGCTTAGTAATATGGCCGAA 59.961 50.000 18.36 0.00 44.73 4.30
814 821 3.072211 GGGCTTAGTAATATGGCCGAAC 58.928 50.000 11.96 0.00 43.27 3.95
815 822 2.735134 GGCTTAGTAATATGGCCGAACG 59.265 50.000 0.00 0.00 33.30 3.95
816 823 3.387397 GCTTAGTAATATGGCCGAACGT 58.613 45.455 0.00 0.00 0.00 3.99
817 824 3.805971 GCTTAGTAATATGGCCGAACGTT 59.194 43.478 0.00 0.00 0.00 3.99
818 825 4.084693 GCTTAGTAATATGGCCGAACGTTC 60.085 45.833 18.47 18.47 0.00 3.95
820 827 2.433239 AGTAATATGGCCGAACGTTCCT 59.567 45.455 22.07 6.63 0.00 3.36
821 828 1.663695 AATATGGCCGAACGTTCCTG 58.336 50.000 22.07 14.43 0.00 3.86
822 829 0.179056 ATATGGCCGAACGTTCCTGG 60.179 55.000 22.07 18.51 0.00 4.45
824 831 1.546589 ATGGCCGAACGTTCCTGGTA 61.547 55.000 22.07 11.89 0.00 3.25
825 832 1.447314 GGCCGAACGTTCCTGGTAG 60.447 63.158 22.07 7.14 0.00 3.18
826 833 1.291272 GCCGAACGTTCCTGGTAGT 59.709 57.895 22.07 0.00 0.00 2.73
827 834 0.527565 GCCGAACGTTCCTGGTAGTA 59.472 55.000 22.07 0.00 0.00 1.82
829 836 2.805845 CCGAACGTTCCTGGTAGTATG 58.194 52.381 22.07 4.29 0.00 2.39
832 839 3.128242 CGAACGTTCCTGGTAGTATGTCT 59.872 47.826 22.07 0.00 0.00 3.41
833 840 4.670347 GAACGTTCCTGGTAGTATGTCTC 58.330 47.826 17.68 0.00 0.00 3.36
835 842 3.695060 ACGTTCCTGGTAGTATGTCTCTG 59.305 47.826 0.00 0.00 0.00 3.35
836 843 3.489398 CGTTCCTGGTAGTATGTCTCTGC 60.489 52.174 0.00 0.00 0.00 4.26
839 846 4.462133 TCCTGGTAGTATGTCTCTGCTAC 58.538 47.826 0.00 0.00 34.65 3.58
916 923 2.237143 TGATGCTTCCCCAACTACTCAG 59.763 50.000 0.00 0.00 0.00 3.35
942 949 3.614092 TGTTCTTCCAAGATGCATCTCC 58.386 45.455 28.83 2.32 35.76 3.71
972 979 1.073964 CCTCATCGCCATAAGCATCG 58.926 55.000 0.00 0.00 44.04 3.84
978 985 0.870393 CGCCATAAGCATCGCTTCAT 59.130 50.000 4.16 0.00 46.77 2.57
990 997 2.416747 TCGCTTCATCTTCACAAGTGG 58.583 47.619 0.00 0.00 0.00 4.00
1161 4588 0.379669 GGCCATGTCATCAAGCTTCG 59.620 55.000 0.00 0.00 0.00 3.79
1307 4800 4.777366 ACTGTTTGCTAGGCCCAAATAATT 59.223 37.500 8.62 0.00 34.99 1.40
1375 4869 3.525199 ACCTCTCTGGCATTCCATTTACT 59.475 43.478 0.00 0.00 42.51 2.24
1651 5166 5.761726 CCTTACCTTAACCTCACGAAACTTT 59.238 40.000 0.00 0.00 0.00 2.66
1738 5253 5.293569 GTGACGACCCTCAAATACCTAAATG 59.706 44.000 0.00 0.00 0.00 2.32
1822 5349 6.575162 AGGTACTTGATTTGTCATTCAACC 57.425 37.500 0.00 0.00 31.84 3.77
1847 5383 7.995488 CCATCTGAATAGGACTGAAAACCTTAT 59.005 37.037 0.00 0.00 37.68 1.73
1851 5387 7.110155 TGAATAGGACTGAAAACCTTATGACC 58.890 38.462 0.00 0.00 37.68 4.02
1885 5421 4.214310 TCTTTGCTGTTTGGAAATCCTCA 58.786 39.130 0.44 0.00 35.49 3.86
1896 5432 5.878406 TGGAAATCCTCAACCTCTCTATC 57.122 43.478 0.44 0.00 36.82 2.08
2061 5602 4.357918 ACTTGACCTGTCTAGCAACAAT 57.642 40.909 8.36 0.00 36.20 2.71
2087 5628 1.913419 TGGATTTCTACCACCAGGGAC 59.087 52.381 0.00 0.00 41.15 4.46
2110 5651 3.583806 TGGAATTTGGCGCATTTAACTG 58.416 40.909 10.83 0.00 0.00 3.16
2119 5660 3.625764 GGCGCATTTAACTGACCTTGATA 59.374 43.478 10.83 0.00 0.00 2.15
2532 6073 4.036498 GTGGATTCAGATTGGCATTCTCTG 59.964 45.833 8.86 11.37 38.18 3.35
2557 6098 8.405531 TGTTTAGGCTACAATATGCAGATTTTC 58.594 33.333 3.24 0.00 0.00 2.29
2623 6164 1.353022 TGCGGGGGATCACTAAACTTT 59.647 47.619 0.00 0.00 0.00 2.66
2775 6316 5.531287 GGCTTTGGAAACTCTTTCTCTAACA 59.469 40.000 0.00 0.00 39.59 2.41
2938 6479 2.286365 TGTTGGGTCCATTCCAGAAC 57.714 50.000 0.00 0.00 35.48 3.01
2941 6482 0.698238 TGGGTCCATTCCAGAACCTG 59.302 55.000 0.00 0.00 42.03 4.00
3039 6580 9.959749 TTTGACATCCAAAAACTACAGTATTTC 57.040 29.630 0.00 0.00 41.43 2.17
3212 6755 5.163591 TGAGCCACAATGCATTTTCTGATAG 60.164 40.000 9.83 0.00 0.00 2.08
3369 7114 5.862678 TGTATCGAGTCATGGGATACAAA 57.137 39.130 18.66 5.75 45.55 2.83
3521 7293 4.043310 TGAAATCCCTGGAGACATCACTTT 59.957 41.667 0.00 0.00 41.51 2.66
3654 7426 3.078836 TCCGGTGGAATCCCGTCC 61.079 66.667 0.00 0.00 43.98 4.79
3841 11935 6.338146 TGTTCAGGAAATGGTACTTCTATCG 58.662 40.000 0.00 0.00 0.00 2.92
3898 11992 4.285863 TCCACTGACCTTTCATTTTGGTT 58.714 39.130 0.00 0.00 33.74 3.67
3955 12049 2.937469 TTGTGCACTGTTGTTCAAGG 57.063 45.000 19.41 0.00 0.00 3.61
4079 16330 4.867599 CCGCTACGTCGCCCCTTC 62.868 72.222 6.47 0.00 0.00 3.46
4298 16783 2.380410 GGCCGTAGCAAGTGTGACG 61.380 63.158 0.00 0.00 42.56 4.35
4354 16936 2.035961 GTCGCCCTGATTAGTATGCTGA 59.964 50.000 0.00 0.00 0.00 4.26
4360 16942 4.262207 CCCTGATTAGTATGCTGACGATGT 60.262 45.833 0.00 0.00 0.00 3.06
4386 16969 3.296709 CTTCAGGCCGTAGCACCGT 62.297 63.158 0.00 0.00 42.56 4.83
4511 17099 4.021229 TCACGCTATTAGGTTCTTCCTCA 58.979 43.478 0.00 0.00 44.42 3.86
4526 17114 2.457598 TCCTCACCTACTTCGAGCATT 58.542 47.619 0.00 0.00 0.00 3.56
4608 17219 3.573772 CTCGCTCACCCAAGTCGCA 62.574 63.158 0.00 0.00 0.00 5.10
4636 17272 2.473070 TCCACCCCATTCATCTTCGTA 58.527 47.619 0.00 0.00 0.00 3.43
4639 17276 3.605634 CACCCCATTCATCTTCGTACAA 58.394 45.455 0.00 0.00 0.00 2.41
4652 17289 1.616374 TCGTACAACACCAGCTCATCA 59.384 47.619 0.00 0.00 0.00 3.07
4662 17299 0.388520 CAGCTCATCACCAACGTCGA 60.389 55.000 0.00 0.00 0.00 4.20
4739 17376 2.953821 CCAATTGGCGTCGCAACT 59.046 55.556 20.50 0.00 0.00 3.16
4828 17623 1.153647 CTTCGCATGTCCGGTGCTA 60.154 57.895 13.06 0.00 40.37 3.49
4835 17630 3.338249 GCATGTCCGGTGCTATCAATAT 58.662 45.455 8.21 0.00 39.45 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 8.197439 CCAATAGGTTGTCTCTTTTCTTGTTTT 58.803 33.333 0.00 0.00 33.36 2.43
25 26 6.265422 CCCAATAGGTTGTCTCTTTTCTTGTT 59.735 38.462 0.00 0.00 33.36 2.83
29 30 4.263949 CCCCCAATAGGTTGTCTCTTTTCT 60.264 45.833 0.00 0.00 33.36 2.52
30 31 4.017126 CCCCCAATAGGTTGTCTCTTTTC 58.983 47.826 0.00 0.00 33.36 2.29
32 33 3.739401 CCCCCAATAGGTTGTCTCTTT 57.261 47.619 0.00 0.00 33.36 2.52
55 56 1.756950 GAGAATTTTCCCCGCCCCC 60.757 63.158 0.00 0.00 0.00 5.40
56 57 1.000145 TGAGAATTTTCCCCGCCCC 60.000 57.895 0.00 0.00 0.00 5.80
57 58 1.320344 GGTGAGAATTTTCCCCGCCC 61.320 60.000 0.00 0.00 0.00 6.13
58 59 1.320344 GGGTGAGAATTTTCCCCGCC 61.320 60.000 6.74 0.00 34.32 6.13
62 63 0.039180 ACGGGGGTGAGAATTTTCCC 59.961 55.000 0.00 0.00 39.22 3.97
63 64 1.173913 CACGGGGGTGAGAATTTTCC 58.826 55.000 0.00 0.00 0.00 3.13
64 65 0.526211 GCACGGGGGTGAGAATTTTC 59.474 55.000 0.00 0.00 0.00 2.29
65 66 0.898326 GGCACGGGGGTGAGAATTTT 60.898 55.000 0.00 0.00 0.00 1.82
66 67 1.304134 GGCACGGGGGTGAGAATTT 60.304 57.895 0.00 0.00 0.00 1.82
67 68 2.075355 TTGGCACGGGGGTGAGAATT 62.075 55.000 0.00 0.00 0.00 2.17
69 70 2.075355 ATTTGGCACGGGGGTGAGAA 62.075 55.000 0.00 0.00 0.00 2.87
70 71 1.202099 TATTTGGCACGGGGGTGAGA 61.202 55.000 0.00 0.00 0.00 3.27
71 72 0.322997 TTATTTGGCACGGGGGTGAG 60.323 55.000 0.00 0.00 0.00 3.51
73 74 1.136110 GAATTATTTGGCACGGGGGTG 59.864 52.381 0.00 0.00 0.00 4.61
74 75 1.480789 GAATTATTTGGCACGGGGGT 58.519 50.000 0.00 0.00 0.00 4.95
77 78 0.248866 GGCGAATTATTTGGCACGGG 60.249 55.000 13.04 0.00 38.22 5.28
78 79 0.591236 CGGCGAATTATTTGGCACGG 60.591 55.000 17.14 0.00 38.22 4.94
80 81 0.248866 CCCGGCGAATTATTTGGCAC 60.249 55.000 9.30 1.59 38.22 5.01
83 84 1.362355 GGCCCGGCGAATTATTTGG 59.638 57.895 9.30 0.00 0.00 3.28
84 85 0.457851 TTGGCCCGGCGAATTATTTG 59.542 50.000 9.30 0.00 0.00 2.32
85 86 0.458260 GTTGGCCCGGCGAATTATTT 59.542 50.000 9.30 0.00 0.00 1.40
87 88 1.826487 GGTTGGCCCGGCGAATTAT 60.826 57.895 9.30 0.00 0.00 1.28
88 89 2.438795 GGTTGGCCCGGCGAATTA 60.439 61.111 9.30 0.00 0.00 1.40
100 101 2.690653 TTTCAGCCTCGTGGGGTTGG 62.691 60.000 5.54 0.00 44.41 3.77
101 102 0.821711 TTTTCAGCCTCGTGGGGTTG 60.822 55.000 5.54 0.00 44.41 3.77
102 103 0.106419 TTTTTCAGCCTCGTGGGGTT 60.106 50.000 5.54 0.00 44.41 4.11
104 105 4.492604 TTTTTCAGCCTCGTGGGG 57.507 55.556 5.54 0.00 35.12 4.96
118 119 2.961424 CCCGTCAGGAGGCATTTTT 58.039 52.632 0.00 0.00 41.02 1.94
119 120 4.743018 CCCGTCAGGAGGCATTTT 57.257 55.556 0.00 0.00 41.02 1.82
126 127 2.738521 CGTTGTGCCCGTCAGGAG 60.739 66.667 0.00 0.00 41.02 3.69
127 128 4.308458 CCGTTGTGCCCGTCAGGA 62.308 66.667 0.00 0.00 41.02 3.86
129 130 4.988598 AGCCGTTGTGCCCGTCAG 62.989 66.667 0.00 0.00 0.00 3.51
134 135 3.628646 ATCTCCAGCCGTTGTGCCC 62.629 63.158 0.00 0.00 0.00 5.36
135 136 2.045926 ATCTCCAGCCGTTGTGCC 60.046 61.111 0.00 0.00 0.00 5.01
136 137 3.044059 GCATCTCCAGCCGTTGTGC 62.044 63.158 0.00 0.00 0.00 4.57
137 138 1.364626 GAGCATCTCCAGCCGTTGTG 61.365 60.000 0.00 0.00 0.00 3.33
138 139 1.078848 GAGCATCTCCAGCCGTTGT 60.079 57.895 0.00 0.00 0.00 3.32
139 140 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
151 152 5.507149 CGATCTGTACTGAAGCTAAGAGCAT 60.507 44.000 6.54 0.00 45.56 3.79
152 153 4.201960 CGATCTGTACTGAAGCTAAGAGCA 60.202 45.833 6.54 1.76 45.56 4.26
154 155 5.277779 CCTCGATCTGTACTGAAGCTAAGAG 60.278 48.000 6.54 8.75 0.00 2.85
155 156 4.576873 CCTCGATCTGTACTGAAGCTAAGA 59.423 45.833 6.54 0.00 0.00 2.10
156 157 4.576873 TCCTCGATCTGTACTGAAGCTAAG 59.423 45.833 6.54 0.00 0.00 2.18
158 159 4.152284 TCCTCGATCTGTACTGAAGCTA 57.848 45.455 6.54 0.00 0.00 3.32
160 161 3.378742 TCTTCCTCGATCTGTACTGAAGC 59.621 47.826 6.54 1.81 0.00 3.86
161 162 4.497340 GCTCTTCCTCGATCTGTACTGAAG 60.497 50.000 6.54 4.66 0.00 3.02
162 163 3.378742 GCTCTTCCTCGATCTGTACTGAA 59.621 47.826 6.54 0.00 0.00 3.02
163 164 2.946329 GCTCTTCCTCGATCTGTACTGA 59.054 50.000 4.80 4.80 0.00 3.41
164 165 2.948979 AGCTCTTCCTCGATCTGTACTG 59.051 50.000 0.00 0.00 0.00 2.74
165 166 3.290948 AGCTCTTCCTCGATCTGTACT 57.709 47.619 0.00 0.00 0.00 2.73
166 167 4.382291 TCTAGCTCTTCCTCGATCTGTAC 58.618 47.826 0.00 0.00 0.00 2.90
169 170 3.191162 CCATCTAGCTCTTCCTCGATCTG 59.809 52.174 0.00 0.00 0.00 2.90
170 171 3.420893 CCATCTAGCTCTTCCTCGATCT 58.579 50.000 0.00 0.00 0.00 2.75
172 173 2.524306 CCCATCTAGCTCTTCCTCGAT 58.476 52.381 0.00 0.00 0.00 3.59
175 176 1.715785 AGCCCATCTAGCTCTTCCTC 58.284 55.000 0.00 0.00 34.91 3.71
176 177 2.448961 TCTAGCCCATCTAGCTCTTCCT 59.551 50.000 0.00 0.00 43.55 3.36
177 178 2.825532 CTCTAGCCCATCTAGCTCTTCC 59.174 54.545 0.00 0.00 43.55 3.46
178 179 3.496331 ACTCTAGCCCATCTAGCTCTTC 58.504 50.000 0.00 0.00 43.55 2.87
179 180 3.611025 ACTCTAGCCCATCTAGCTCTT 57.389 47.619 0.00 0.00 43.55 2.85
180 181 3.117322 TCAACTCTAGCCCATCTAGCTCT 60.117 47.826 0.00 0.00 43.55 4.09
181 182 3.226777 TCAACTCTAGCCCATCTAGCTC 58.773 50.000 0.00 0.00 43.55 4.09
182 183 3.320610 TCAACTCTAGCCCATCTAGCT 57.679 47.619 0.00 0.00 43.55 3.32
183 184 3.244044 CCTTCAACTCTAGCCCATCTAGC 60.244 52.174 0.00 0.00 43.55 3.42
184 185 3.323403 CCCTTCAACTCTAGCCCATCTAG 59.677 52.174 0.00 0.00 44.90 2.43
185 186 3.052109 TCCCTTCAACTCTAGCCCATCTA 60.052 47.826 0.00 0.00 0.00 1.98
186 187 2.122768 CCCTTCAACTCTAGCCCATCT 58.877 52.381 0.00 0.00 0.00 2.90
187 188 2.119495 TCCCTTCAACTCTAGCCCATC 58.881 52.381 0.00 0.00 0.00 3.51
188 189 2.270434 TCCCTTCAACTCTAGCCCAT 57.730 50.000 0.00 0.00 0.00 4.00
190 191 3.282885 CATTTCCCTTCAACTCTAGCCC 58.717 50.000 0.00 0.00 0.00 5.19
192 193 3.956744 ACCATTTCCCTTCAACTCTAGC 58.043 45.455 0.00 0.00 0.00 3.42
194 195 5.576563 TGAACCATTTCCCTTCAACTCTA 57.423 39.130 0.00 0.00 0.00 2.43
195 196 4.453480 TGAACCATTTCCCTTCAACTCT 57.547 40.909 0.00 0.00 0.00 3.24
197 198 4.803452 TCTTGAACCATTTCCCTTCAACT 58.197 39.130 0.00 0.00 31.99 3.16
198 199 4.827284 TCTCTTGAACCATTTCCCTTCAAC 59.173 41.667 0.00 0.00 31.99 3.18
199 200 5.060427 TCTCTTGAACCATTTCCCTTCAA 57.940 39.130 0.00 0.00 33.80 2.69
200 201 4.722526 TCTCTTGAACCATTTCCCTTCA 57.277 40.909 0.00 0.00 0.00 3.02
201 202 5.316987 TCTTCTCTTGAACCATTTCCCTTC 58.683 41.667 0.00 0.00 0.00 3.46
203 204 5.527026 ATCTTCTCTTGAACCATTTCCCT 57.473 39.130 0.00 0.00 0.00 4.20
204 205 5.298026 GCTATCTTCTCTTGAACCATTTCCC 59.702 44.000 0.00 0.00 0.00 3.97
205 206 5.007136 CGCTATCTTCTCTTGAACCATTTCC 59.993 44.000 0.00 0.00 0.00 3.13
206 207 5.007136 CCGCTATCTTCTCTTGAACCATTTC 59.993 44.000 0.00 0.00 0.00 2.17
207 208 4.878397 CCGCTATCTTCTCTTGAACCATTT 59.122 41.667 0.00 0.00 0.00 2.32
208 209 4.080863 ACCGCTATCTTCTCTTGAACCATT 60.081 41.667 0.00 0.00 0.00 3.16
209 210 3.452627 ACCGCTATCTTCTCTTGAACCAT 59.547 43.478 0.00 0.00 0.00 3.55
210 211 2.832129 ACCGCTATCTTCTCTTGAACCA 59.168 45.455 0.00 0.00 0.00 3.67
212 213 5.163642 TGTCTACCGCTATCTTCTCTTGAAC 60.164 44.000 0.00 0.00 0.00 3.18
214 215 4.524053 TGTCTACCGCTATCTTCTCTTGA 58.476 43.478 0.00 0.00 0.00 3.02
215 216 4.902443 TGTCTACCGCTATCTTCTCTTG 57.098 45.455 0.00 0.00 0.00 3.02
217 218 5.381757 AGATTGTCTACCGCTATCTTCTCT 58.618 41.667 0.00 0.00 0.00 3.10
218 219 5.699097 AGATTGTCTACCGCTATCTTCTC 57.301 43.478 0.00 0.00 0.00 2.87
219 220 5.594725 TGAAGATTGTCTACCGCTATCTTCT 59.405 40.000 20.73 0.00 45.90 2.85
220 221 5.833082 TGAAGATTGTCTACCGCTATCTTC 58.167 41.667 16.55 16.55 45.91 2.87
221 222 5.854010 TGAAGATTGTCTACCGCTATCTT 57.146 39.130 0.00 0.00 39.68 2.40
222 223 5.303078 ACATGAAGATTGTCTACCGCTATCT 59.697 40.000 0.00 0.00 31.68 1.98
224 225 5.509840 GGACATGAAGATTGTCTACCGCTAT 60.510 44.000 0.00 0.00 42.48 2.97
225 226 4.202121 GGACATGAAGATTGTCTACCGCTA 60.202 45.833 0.00 0.00 42.48 4.26
227 228 2.866762 GGACATGAAGATTGTCTACCGC 59.133 50.000 0.00 0.00 42.48 5.68
229 230 4.487714 TGGGACATGAAGATTGTCTACC 57.512 45.455 0.00 0.00 42.48 3.18
233 234 9.648832 GTTCCAACATGGGACATGAAGATTGTC 62.649 44.444 15.45 0.00 45.63 3.18
235 236 5.622914 GTTCCAACATGGGACATGAAGATTG 60.623 44.000 15.45 9.12 45.63 2.67
236 237 4.463891 GTTCCAACATGGGACATGAAGATT 59.536 41.667 15.45 0.00 45.63 2.40
237 238 4.019174 GTTCCAACATGGGACATGAAGAT 58.981 43.478 15.45 0.00 45.63 2.40
239 240 3.855689 GTTCCAACATGGGACATGAAG 57.144 47.619 15.45 7.30 45.63 3.02
245 246 0.872388 GTCGTGTTCCAACATGGGAC 59.128 55.000 10.98 0.59 46.54 4.46
246 247 0.250553 GGTCGTGTTCCAACATGGGA 60.251 55.000 10.98 0.00 44.17 4.37
247 248 1.241315 GGGTCGTGTTCCAACATGGG 61.241 60.000 10.98 0.00 44.17 4.00
248 249 0.536233 TGGGTCGTGTTCCAACATGG 60.536 55.000 10.98 0.59 44.17 3.66
249 250 1.533625 ATGGGTCGTGTTCCAACATG 58.466 50.000 5.43 5.43 45.13 3.21
251 252 1.695242 ACTATGGGTCGTGTTCCAACA 59.305 47.619 0.00 0.00 36.54 3.33
252 253 2.344025 GACTATGGGTCGTGTTCCAAC 58.656 52.381 0.00 0.00 36.54 3.77
253 254 2.754946 GACTATGGGTCGTGTTCCAA 57.245 50.000 0.00 0.00 36.54 3.53
262 263 4.338682 AGTCTAACACGATGACTATGGGTC 59.661 45.833 0.00 0.00 44.70 4.46
263 264 4.279145 AGTCTAACACGATGACTATGGGT 58.721 43.478 0.00 0.00 39.02 4.51
265 266 6.862711 TCTAGTCTAACACGATGACTATGG 57.137 41.667 0.00 0.00 40.90 2.74
266 267 6.853872 GCTTCTAGTCTAACACGATGACTATG 59.146 42.308 0.00 0.00 40.90 2.23
267 268 6.292973 CGCTTCTAGTCTAACACGATGACTAT 60.293 42.308 0.00 0.00 40.90 2.12
268 269 5.006455 CGCTTCTAGTCTAACACGATGACTA 59.994 44.000 0.00 0.00 40.86 2.59
269 270 4.201832 CGCTTCTAGTCTAACACGATGACT 60.202 45.833 0.00 0.00 42.74 3.41
270 271 4.029704 CGCTTCTAGTCTAACACGATGAC 58.970 47.826 0.00 0.00 0.00 3.06
275 276 2.177977 CTGCGCTTCTAGTCTAACACG 58.822 52.381 9.73 0.00 0.00 4.49
276 277 2.917971 CACTGCGCTTCTAGTCTAACAC 59.082 50.000 9.73 0.00 0.00 3.32
277 278 2.094700 CCACTGCGCTTCTAGTCTAACA 60.095 50.000 9.73 0.00 0.00 2.41
278 279 2.531206 CCACTGCGCTTCTAGTCTAAC 58.469 52.381 9.73 0.00 0.00 2.34
279 280 1.135083 GCCACTGCGCTTCTAGTCTAA 60.135 52.381 9.73 0.00 0.00 2.10
281 282 1.216710 GCCACTGCGCTTCTAGTCT 59.783 57.895 9.73 0.00 0.00 3.24
284 285 2.010145 TTAAGCCACTGCGCTTCTAG 57.990 50.000 9.73 0.00 46.06 2.43
285 286 2.346803 CTTTAAGCCACTGCGCTTCTA 58.653 47.619 9.73 0.00 46.06 2.10
287 288 0.455126 GCTTTAAGCCACTGCGCTTC 60.455 55.000 9.73 0.00 46.06 3.86
289 290 3.267974 GCTTTAAGCCACTGCGCT 58.732 55.556 9.73 0.00 44.33 5.92
299 300 4.927422 TGAAAAACGGTGAAGGCTTTAAG 58.073 39.130 0.00 0.00 0.00 1.85
301 302 4.580995 TGATGAAAAACGGTGAAGGCTTTA 59.419 37.500 0.00 0.00 0.00 1.85
303 304 2.955660 TGATGAAAAACGGTGAAGGCTT 59.044 40.909 0.00 0.00 0.00 4.35
305 306 3.244976 CATGATGAAAAACGGTGAAGGC 58.755 45.455 0.00 0.00 0.00 4.35
306 307 4.503741 ACATGATGAAAAACGGTGAAGG 57.496 40.909 0.00 0.00 0.00 3.46
307 308 5.280945 ACAACATGATGAAAAACGGTGAAG 58.719 37.500 10.29 0.00 0.00 3.02
309 310 4.909696 ACAACATGATGAAAAACGGTGA 57.090 36.364 10.29 0.00 0.00 4.02
310 311 5.515184 TGTACAACATGATGAAAAACGGTG 58.485 37.500 10.29 0.00 0.00 4.94
311 312 5.759506 TGTACAACATGATGAAAAACGGT 57.240 34.783 10.29 0.00 0.00 4.83
312 313 8.909708 AATATGTACAACATGATGAAAAACGG 57.090 30.769 10.29 0.00 39.53 4.44
322 323 9.337396 GGGAAGACATTAATATGTACAACATGA 57.663 33.333 0.00 0.00 44.90 3.07
323 324 9.342308 AGGGAAGACATTAATATGTACAACATG 57.658 33.333 0.00 0.88 44.90 3.21
353 354 2.295909 CCAGCGGAGACAAATGGAAAAA 59.704 45.455 0.00 0.00 32.55 1.94
356 357 0.400213 ACCAGCGGAGACAAATGGAA 59.600 50.000 1.50 0.00 34.99 3.53
357 358 0.036388 GACCAGCGGAGACAAATGGA 60.036 55.000 1.50 0.00 34.99 3.41
358 359 1.026718 GGACCAGCGGAGACAAATGG 61.027 60.000 1.50 0.00 37.07 3.16
359 360 0.321564 TGGACCAGCGGAGACAAATG 60.322 55.000 0.00 0.00 0.00 2.32
360 361 0.400213 TTGGACCAGCGGAGACAAAT 59.600 50.000 0.00 0.00 0.00 2.32
363 364 0.181587 TTTTTGGACCAGCGGAGACA 59.818 50.000 0.00 0.00 0.00 3.41
364 365 0.875059 CTTTTTGGACCAGCGGAGAC 59.125 55.000 0.00 0.00 0.00 3.36
365 366 0.250727 CCTTTTTGGACCAGCGGAGA 60.251 55.000 0.00 0.00 38.35 3.71
366 367 1.866853 GCCTTTTTGGACCAGCGGAG 61.867 60.000 0.00 0.00 38.35 4.63
367 368 1.901464 GCCTTTTTGGACCAGCGGA 60.901 57.895 0.00 0.00 38.35 5.54
368 369 1.463553 AAGCCTTTTTGGACCAGCGG 61.464 55.000 0.00 0.00 38.35 5.52
369 370 0.039165 GAAGCCTTTTTGGACCAGCG 60.039 55.000 0.00 0.00 38.35 5.18
371 372 2.489722 GCTAGAAGCCTTTTTGGACCAG 59.510 50.000 0.00 0.00 38.35 4.00
372 373 2.158534 TGCTAGAAGCCTTTTTGGACCA 60.159 45.455 0.00 0.00 41.51 4.02
373 374 2.229062 GTGCTAGAAGCCTTTTTGGACC 59.771 50.000 0.00 0.00 41.51 4.46
375 376 2.151202 CGTGCTAGAAGCCTTTTTGGA 58.849 47.619 0.00 0.00 41.51 3.53
376 377 1.401539 GCGTGCTAGAAGCCTTTTTGG 60.402 52.381 0.00 0.00 41.51 3.28
377 378 1.537202 AGCGTGCTAGAAGCCTTTTTG 59.463 47.619 0.00 0.00 41.51 2.44
378 379 1.807142 GAGCGTGCTAGAAGCCTTTTT 59.193 47.619 0.00 0.00 41.51 1.94
379 380 1.270839 TGAGCGTGCTAGAAGCCTTTT 60.271 47.619 0.00 0.00 41.51 2.27
380 381 0.321671 TGAGCGTGCTAGAAGCCTTT 59.678 50.000 0.00 0.00 41.51 3.11
381 382 0.321671 TTGAGCGTGCTAGAAGCCTT 59.678 50.000 0.00 0.00 41.51 4.35
382 383 0.108424 CTTGAGCGTGCTAGAAGCCT 60.108 55.000 0.00 0.00 41.51 4.58
384 385 2.279582 TACTTGAGCGTGCTAGAAGC 57.720 50.000 11.22 0.00 42.82 3.86
385 386 5.786401 AAAATACTTGAGCGTGCTAGAAG 57.214 39.130 10.18 10.18 0.00 2.85
387 388 4.804139 GCTAAAATACTTGAGCGTGCTAGA 59.196 41.667 0.00 0.00 0.00 2.43
388 389 4.566759 TGCTAAAATACTTGAGCGTGCTAG 59.433 41.667 0.00 0.00 37.77 3.42
392 393 7.234187 TCTTATGCTAAAATACTTGAGCGTG 57.766 36.000 0.00 0.00 37.77 5.34
393 394 7.495934 ACATCTTATGCTAAAATACTTGAGCGT 59.504 33.333 0.00 0.00 37.77 5.07
395 396 8.286097 GGACATCTTATGCTAAAATACTTGAGC 58.714 37.037 0.00 0.00 35.43 4.26
398 399 8.892723 TGTGGACATCTTATGCTAAAATACTTG 58.107 33.333 0.00 0.00 0.00 3.16
464 467 6.922247 ATCGACGAGTGAAAATCTCTAGTA 57.078 37.500 3.01 0.00 28.64 1.82
584 591 6.651225 GGGATTGCCTCTATGTACACTATTTC 59.349 42.308 0.00 0.00 0.00 2.17
588 595 3.572682 CGGGATTGCCTCTATGTACACTA 59.427 47.826 0.00 0.00 0.00 2.74
604 611 3.411517 CTCCACAGCCCCGGGATT 61.412 66.667 26.32 6.44 0.00 3.01
624 631 2.393764 CAGGCCAAAATCGAACACAAC 58.606 47.619 5.01 0.00 0.00 3.32
627 634 0.598065 AGCAGGCCAAAATCGAACAC 59.402 50.000 5.01 0.00 0.00 3.32
664 671 9.787532 ACTCAATATTGTTTGTTGTATATGCAC 57.212 29.630 14.97 0.00 0.00 4.57
682 689 6.351371 CCACTGTCAAGGTCACTACTCAATAT 60.351 42.308 0.00 0.00 0.00 1.28
683 690 5.047306 CCACTGTCAAGGTCACTACTCAATA 60.047 44.000 0.00 0.00 0.00 1.90
706 713 3.332493 CTGCCTGCAATCACACGCC 62.332 63.158 0.00 0.00 0.00 5.68
747 754 4.082625 CCAGTCATGCAATTTTGTGCTAGA 60.083 41.667 0.00 0.00 45.17 2.43
748 755 4.171005 CCAGTCATGCAATTTTGTGCTAG 58.829 43.478 0.00 0.00 45.17 3.42
749 756 3.056678 CCCAGTCATGCAATTTTGTGCTA 60.057 43.478 0.00 0.00 45.17 3.49
751 758 2.070783 CCCAGTCATGCAATTTTGTGC 58.929 47.619 0.00 0.00 45.15 4.57
803 810 0.179056 CCAGGAACGTTCGGCCATAT 60.179 55.000 21.34 0.00 0.00 1.78
809 816 2.165030 ACATACTACCAGGAACGTTCGG 59.835 50.000 21.34 19.28 0.00 4.30
810 817 3.128242 AGACATACTACCAGGAACGTTCG 59.872 47.826 21.34 10.81 0.00 3.95
811 818 4.398673 AGAGACATACTACCAGGAACGTTC 59.601 45.833 20.14 20.14 0.00 3.95
812 819 4.158025 CAGAGACATACTACCAGGAACGTT 59.842 45.833 0.00 0.00 0.00 3.99
813 820 3.695060 CAGAGACATACTACCAGGAACGT 59.305 47.826 0.00 0.00 0.00 3.99
814 821 3.489398 GCAGAGACATACTACCAGGAACG 60.489 52.174 0.00 0.00 0.00 3.95
815 822 3.702045 AGCAGAGACATACTACCAGGAAC 59.298 47.826 0.00 0.00 0.00 3.62
816 823 3.982516 AGCAGAGACATACTACCAGGAA 58.017 45.455 0.00 0.00 0.00 3.36
817 824 3.671740 AGCAGAGACATACTACCAGGA 57.328 47.619 0.00 0.00 0.00 3.86
818 825 4.207955 TGTAGCAGAGACATACTACCAGG 58.792 47.826 0.00 0.00 35.25 4.45
839 846 9.400638 GCTTAGTGTTACTAGTATTCAGCTATG 57.599 37.037 2.79 11.86 31.47 2.23
862 869 7.969690 AGATCTGTATATATGCTACAGGCTT 57.030 36.000 19.29 10.25 44.01 4.35
873 880 9.237187 CATCATACGGGCTAGATCTGTATATAT 57.763 37.037 5.18 9.94 35.59 0.86
875 882 6.015856 GCATCATACGGGCTAGATCTGTATAT 60.016 42.308 5.18 8.38 35.59 0.86
916 923 2.294233 TGCATCTTGGAAGAACAACAGC 59.706 45.455 0.00 0.00 38.77 4.40
942 949 1.471676 GGCGATGAGGGTAGTGAACAG 60.472 57.143 0.00 0.00 0.00 3.16
1161 4588 1.400494 ACGGAATTGTATTGCGAAGGC 59.600 47.619 17.93 0.00 36.73 4.35
1307 4800 4.348168 GGAGCCCAAGAACTGAGGAATATA 59.652 45.833 0.00 0.00 0.00 0.86
1375 4869 4.040461 CCAAGTTGAGAAGGAACTCTACCA 59.960 45.833 3.87 0.00 41.14 3.25
1546 5061 6.724893 TGGAATCATATTCAAGGTACGAGA 57.275 37.500 0.00 0.00 0.00 4.04
1629 5144 7.725251 TCTAAAGTTTCGTGAGGTTAAGGTAA 58.275 34.615 0.00 0.00 0.00 2.85
1822 5349 8.834465 CATAAGGTTTTCAGTCCTATTCAGATG 58.166 37.037 0.00 0.00 33.27 2.90
1847 5383 4.338118 AGCAAAGATTTTCAAGAACGGTCA 59.662 37.500 1.87 0.00 0.00 4.02
1851 5387 6.405216 CAAACAGCAAAGATTTTCAAGAACG 58.595 36.000 0.00 0.00 0.00 3.95
1885 5421 8.381636 CCCATTCATAGAATTGATAGAGAGGTT 58.618 37.037 0.00 0.00 0.00 3.50
1896 5432 8.551440 TCCACTATATCCCCATTCATAGAATTG 58.449 37.037 0.00 0.00 0.00 2.32
2025 5566 3.525537 GTCAAGTATGCTCAAGCTGCTA 58.474 45.455 0.90 0.00 42.66 3.49
2071 5612 1.702957 CCAAGTCCCTGGTGGTAGAAA 59.297 52.381 0.00 0.00 34.77 2.52
2074 5615 1.358152 TTCCAAGTCCCTGGTGGTAG 58.642 55.000 1.46 0.00 37.74 3.18
2087 5628 4.091800 CAGTTAAATGCGCCAAATTCCAAG 59.908 41.667 4.18 0.00 0.00 3.61
2110 5651 4.965814 TGATTCAGGCTGATATCAAGGTC 58.034 43.478 26.04 13.82 0.00 3.85
2119 5660 3.215151 CATTGAGCTGATTCAGGCTGAT 58.785 45.455 19.50 8.57 39.05 2.90
2532 6073 7.587757 CGAAAATCTGCATATTGTAGCCTAAAC 59.412 37.037 0.00 0.00 29.77 2.01
2623 6164 2.811431 CCAAACCAGTGCTCGAAATGTA 59.189 45.455 0.00 0.00 0.00 2.29
2775 6316 1.002134 CCCGGTGAGCTGGTTTGAT 60.002 57.895 0.00 0.00 39.55 2.57
3039 6580 3.944422 AAACTGTTGTTACTGAGCACG 57.056 42.857 0.00 0.00 34.96 5.34
3212 6755 5.523916 AGCATTGTTATGTCGACTGGAATAC 59.476 40.000 17.92 6.94 34.12 1.89
3339 7084 4.441792 CCATGACTCGATACATTTCCACA 58.558 43.478 0.00 0.00 0.00 4.17
3352 7097 5.107337 CGATCATTTTGTATCCCATGACTCG 60.107 44.000 0.00 0.00 0.00 4.18
3369 7114 2.239654 ACCAGGTTCCATCACGATCATT 59.760 45.455 0.00 0.00 0.00 2.57
3521 7293 4.583907 TCAAATTCATCAGTGCAACAAGGA 59.416 37.500 0.00 0.00 41.43 3.36
3654 7426 6.369005 CAAAGATGTTAGACTTGACAAGCTG 58.631 40.000 15.24 0.00 0.00 4.24
3841 11935 1.863267 CTGCTTCCGAGATCACCATC 58.137 55.000 0.00 0.00 0.00 3.51
3898 11992 1.391157 GCCACAAGTCCCAGCACAAA 61.391 55.000 0.00 0.00 0.00 2.83
3955 12049 4.541973 AAAAAGCAATTCTCCATGTCCC 57.458 40.909 0.00 0.00 0.00 4.46
3983 12077 4.796231 AGGCGACGCGGTGACATC 62.796 66.667 14.61 0.00 0.00 3.06
3984 12078 4.796231 GAGGCGACGCGGTGACAT 62.796 66.667 14.61 0.00 0.00 3.06
4169 16485 2.288518 GCCGCAAAACTATGACCCAAAA 60.289 45.455 0.00 0.00 0.00 2.44
4386 16969 2.267642 GCAGTGGACCGCATACCA 59.732 61.111 7.99 0.00 0.00 3.25
4409 16994 4.047059 GGAAGTCGACGCACGGGA 62.047 66.667 10.46 0.00 42.82 5.14
4511 17099 1.736032 GCGACAATGCTCGAAGTAGGT 60.736 52.381 8.85 0.00 35.58 3.08
4526 17114 2.260434 GTTAGGAGCACGGCGACA 59.740 61.111 16.62 0.00 0.00 4.35
4636 17272 0.473755 TGGTGATGAGCTGGTGTTGT 59.526 50.000 0.00 0.00 0.00 3.32
4639 17276 0.603707 CGTTGGTGATGAGCTGGTGT 60.604 55.000 0.00 0.00 0.00 4.16
4662 17299 2.211410 TGGTCGGGGAACATGACGT 61.211 57.895 0.00 0.00 37.93 4.34
4828 17623 0.249280 TGGCACGCGTCGATATTGAT 60.249 50.000 9.86 0.00 0.00 2.57
4888 17683 6.404734 GGACAAAGACAAAGTTGATGAAGTGT 60.405 38.462 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.