Multiple sequence alignment - TraesCS5A01G023000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G023000 chr5A 100.000 5372 0 0 1 5372 18677527 18672156 0.000000e+00 9921.0
1 TraesCS5A01G023000 chr5D 95.158 1487 72 0 2248 3734 27014364 27012878 0.000000e+00 2348.0
2 TraesCS5A01G023000 chr5D 97.149 947 20 7 665 1611 27049171 27048232 0.000000e+00 1592.0
3 TraesCS5A01G023000 chr5D 95.213 773 27 4 3865 4637 27012847 27012085 0.000000e+00 1214.0
4 TraesCS5A01G023000 chr5D 95.069 649 31 1 1605 2252 27029402 27028754 0.000000e+00 1020.0
5 TraesCS5A01G023000 chr5D 91.281 734 31 15 4643 5370 27012022 27011316 0.000000e+00 970.0
6 TraesCS5A01G023000 chr5D 87.379 206 19 4 457 658 27049923 27049721 4.190000e-56 230.0
7 TraesCS5A01G023000 chr5D 91.379 58 4 1 4703 4760 443636545 443636601 1.600000e-10 78.7
8 TraesCS5A01G023000 chr7D 79.519 2329 422 38 1873 4168 2495136 2492830 0.000000e+00 1607.0
9 TraesCS5A01G023000 chr7D 74.860 2136 459 50 2064 4145 611218696 611220807 0.000000e+00 898.0
10 TraesCS5A01G023000 chr7D 73.894 2103 458 66 2096 4145 611148186 611150250 0.000000e+00 758.0
11 TraesCS5A01G023000 chr7D 78.261 299 61 4 1207 1503 152976 153272 7.100000e-44 189.0
12 TraesCS5A01G023000 chr7D 81.053 95 13 4 4373 4465 2492598 2492507 2.680000e-08 71.3
13 TraesCS5A01G023000 chr6D 79.771 2180 369 55 1887 4029 36077787 36075643 0.000000e+00 1517.0
14 TraesCS5A01G023000 chr6D 80.181 772 120 24 1013 1769 36078568 36077815 1.020000e-151 547.0
15 TraesCS5A01G023000 chr6D 92.683 41 3 0 4013 4053 16943780 16943820 5.810000e-05 60.2
16 TraesCS5A01G023000 chr4A 78.925 2325 417 51 1871 4145 47654945 47657246 0.000000e+00 1511.0
17 TraesCS5A01G023000 chr4A 78.253 2313 430 48 1871 4151 739719275 739717004 0.000000e+00 1417.0
18 TraesCS5A01G023000 chr4A 78.190 2320 409 53 1871 4151 733780746 733783007 0.000000e+00 1391.0
19 TraesCS5A01G023000 chr4A 77.763 2307 431 49 1871 4151 742114482 742112232 0.000000e+00 1343.0
20 TraesCS5A01G023000 chr4A 81.737 668 102 11 1118 1778 47654285 47654939 1.700000e-149 540.0
21 TraesCS5A01G023000 chr4A 76.273 923 179 31 2152 3048 621130503 621131411 6.340000e-124 455.0
22 TraesCS5A01G023000 chr4A 77.289 546 106 14 3596 4134 722930922 722931456 6.760000e-79 305.0
23 TraesCS5A01G023000 chr4A 76.730 477 87 16 3151 3620 740162844 740163303 1.490000e-60 244.0
24 TraesCS5A01G023000 chr4A 77.273 418 74 14 1377 1781 733780334 733780743 5.410000e-55 226.0
25 TraesCS5A01G023000 chr4A 78.862 123 23 2 4076 4195 723635672 723635794 4.460000e-11 80.5
26 TraesCS5A01G023000 chr6B 80.489 2004 340 35 2195 4168 75520184 75518202 0.000000e+00 1487.0
27 TraesCS5A01G023000 chr6B 81.538 325 49 9 1013 1332 75520522 75520204 1.920000e-64 257.0
28 TraesCS5A01G023000 chr6B 78.676 272 47 6 3875 4145 5584944 5584683 2.570000e-38 171.0
29 TraesCS5A01G023000 chr6B 84.892 139 21 0 4007 4145 5935202 5935340 2.020000e-29 141.0
30 TraesCS5A01G023000 chr6B 90.909 44 4 0 4013 4056 29859679 29859722 5.810000e-05 60.2
31 TraesCS5A01G023000 chr4B 78.704 2315 425 40 1871 4145 513059210 513056924 0.000000e+00 1482.0
32 TraesCS5A01G023000 chr4B 77.106 1009 185 30 808 1793 513060186 513059201 4.730000e-150 542.0
33 TraesCS5A01G023000 chr4D 79.222 1285 230 27 2884 4145 416403242 416401972 0.000000e+00 859.0
34 TraesCS5A01G023000 chr4D 80.580 1035 176 15 1871 2889 416414250 416413225 0.000000e+00 774.0
35 TraesCS5A01G023000 chr4D 77.712 1014 164 39 809 1793 416427179 416426199 1.010000e-156 564.0
36 TraesCS5A01G023000 chr4D 80.965 373 57 7 1425 1793 416414603 416414241 3.170000e-72 283.0
37 TraesCS5A01G023000 chr7B 74.514 2111 460 56 2076 4135 700387298 700389381 0.000000e+00 846.0
38 TraesCS5A01G023000 chr7B 95.918 49 2 0 4712 4760 434839303 434839255 4.460000e-11 80.5
39 TraesCS5A01G023000 chr7A 72.021 2123 461 85 2076 4135 701251206 701253258 1.730000e-139 507.0
40 TraesCS5A01G023000 chr7A 83.333 78 10 2 4388 4465 3591975 3591901 9.650000e-08 69.4
41 TraesCS5A01G023000 chr3A 77.247 356 77 4 1117 1470 731773463 731773816 7.050000e-49 206.0
42 TraesCS5A01G023000 chr5B 94.737 114 2 2 4528 4637 19552748 19552635 1.990000e-39 174.0
43 TraesCS5A01G023000 chr3D 78.099 242 44 7 3668 3907 585259484 585259718 1.560000e-30 145.0
44 TraesCS5A01G023000 chr2A 94.643 56 3 0 4707 4762 559118463 559118408 2.670000e-13 87.9
45 TraesCS5A01G023000 chr2A 91.228 57 5 0 4707 4763 170470444 170470388 1.600000e-10 78.7
46 TraesCS5A01G023000 chr2B 92.982 57 4 0 4707 4763 216462861 216462805 3.450000e-12 84.2
47 TraesCS5A01G023000 chr2D 91.379 58 4 1 4703 4760 619562399 619562343 1.600000e-10 78.7
48 TraesCS5A01G023000 chr1B 91.379 58 4 1 4703 4760 508392295 508392351 1.600000e-10 78.7
49 TraesCS5A01G023000 chr1A 94.118 51 3 0 4710 4760 106228125 106228075 1.600000e-10 78.7
50 TraesCS5A01G023000 chr6A 92.683 41 3 0 4013 4053 17649899 17649939 5.810000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G023000 chr5A 18672156 18677527 5371 True 9921.000000 9921 100.0000 1 5372 1 chr5A.!!$R1 5371
1 TraesCS5A01G023000 chr5D 27011316 27014364 3048 True 1510.666667 2348 93.8840 2248 5370 3 chr5D.!!$R2 3122
2 TraesCS5A01G023000 chr5D 27028754 27029402 648 True 1020.000000 1020 95.0690 1605 2252 1 chr5D.!!$R1 647
3 TraesCS5A01G023000 chr5D 27048232 27049923 1691 True 911.000000 1592 92.2640 457 1611 2 chr5D.!!$R3 1154
4 TraesCS5A01G023000 chr7D 611218696 611220807 2111 False 898.000000 898 74.8600 2064 4145 1 chr7D.!!$F3 2081
5 TraesCS5A01G023000 chr7D 2492507 2495136 2629 True 839.150000 1607 80.2860 1873 4465 2 chr7D.!!$R1 2592
6 TraesCS5A01G023000 chr7D 611148186 611150250 2064 False 758.000000 758 73.8940 2096 4145 1 chr7D.!!$F2 2049
7 TraesCS5A01G023000 chr6D 36075643 36078568 2925 True 1032.000000 1517 79.9760 1013 4029 2 chr6D.!!$R1 3016
8 TraesCS5A01G023000 chr4A 739717004 739719275 2271 True 1417.000000 1417 78.2530 1871 4151 1 chr4A.!!$R1 2280
9 TraesCS5A01G023000 chr4A 742112232 742114482 2250 True 1343.000000 1343 77.7630 1871 4151 1 chr4A.!!$R2 2280
10 TraesCS5A01G023000 chr4A 47654285 47657246 2961 False 1025.500000 1511 80.3310 1118 4145 2 chr4A.!!$F5 3027
11 TraesCS5A01G023000 chr4A 733780334 733783007 2673 False 808.500000 1391 77.7315 1377 4151 2 chr4A.!!$F6 2774
12 TraesCS5A01G023000 chr4A 621130503 621131411 908 False 455.000000 455 76.2730 2152 3048 1 chr4A.!!$F1 896
13 TraesCS5A01G023000 chr4A 722930922 722931456 534 False 305.000000 305 77.2890 3596 4134 1 chr4A.!!$F2 538
14 TraesCS5A01G023000 chr6B 75518202 75520522 2320 True 872.000000 1487 81.0135 1013 4168 2 chr6B.!!$R2 3155
15 TraesCS5A01G023000 chr4B 513056924 513060186 3262 True 1012.000000 1482 77.9050 808 4145 2 chr4B.!!$R1 3337
16 TraesCS5A01G023000 chr4D 416401972 416403242 1270 True 859.000000 859 79.2220 2884 4145 1 chr4D.!!$R1 1261
17 TraesCS5A01G023000 chr4D 416426199 416427179 980 True 564.000000 564 77.7120 809 1793 1 chr4D.!!$R2 984
18 TraesCS5A01G023000 chr4D 416413225 416414603 1378 True 528.500000 774 80.7725 1425 2889 2 chr4D.!!$R3 1464
19 TraesCS5A01G023000 chr7B 700387298 700389381 2083 False 846.000000 846 74.5140 2076 4135 1 chr7B.!!$F1 2059
20 TraesCS5A01G023000 chr7A 701251206 701253258 2052 False 507.000000 507 72.0210 2076 4135 1 chr7A.!!$F1 2059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.033109 GAAGTATTGCCCCAAGCCCT 60.033 55.0 0.00 0.00 42.71 5.19 F
286 287 0.108945 GCCAAAGCCTCTGCAACATC 60.109 55.0 0.00 0.00 41.13 3.06 F
645 646 0.110238 AGCAAAGCAATGTACGTGCG 60.110 50.0 13.80 3.82 46.86 5.34 F
1142 1708 0.538057 TTCTTCTTGGCTGGCTGGTG 60.538 55.0 2.00 0.00 0.00 4.17 F
1422 1989 0.888619 TCGGAAGTGAGATCAACGCT 59.111 50.0 0.00 0.00 0.00 5.07 F
2667 3297 0.318445 GTTGTTCCAGCTTGCAGCAG 60.318 55.0 10.16 2.94 45.56 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1179 1746 2.095567 CGATTTCAGGAGTTTGGCTGTG 60.096 50.000 0.0 0.0 0.00 3.66 R
2188 2786 2.289565 GTGGAGGTTGCTGGCTAATAC 58.710 52.381 0.0 0.0 0.00 1.89 R
2614 3244 0.606604 ATCTTCAAGTACCGTGCCGT 59.393 50.000 0.0 0.0 0.00 5.68 R
2667 3297 0.179054 GGGCTCCTCCGAATACAACC 60.179 60.000 0.0 0.0 34.94 3.77 R
3312 3989 0.476771 GGTCCCACACCAAGGAAGAA 59.523 55.000 0.0 0.0 45.98 2.52 R
4540 5302 1.203287 GAGGAACCAAGCAAGCAATCC 59.797 52.381 0.0 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.668386 GAAAAGGAGTGGCCGGTG 58.332 61.111 1.90 0.00 43.43 4.94
18 19 1.072505 GAAAAGGAGTGGCCGGTGA 59.927 57.895 1.90 0.00 43.43 4.02
19 20 0.536460 GAAAAGGAGTGGCCGGTGAA 60.536 55.000 1.90 0.00 43.43 3.18
20 21 0.537371 AAAAGGAGTGGCCGGTGAAG 60.537 55.000 1.90 0.00 43.43 3.02
21 22 3.553095 AAGGAGTGGCCGGTGAAGC 62.553 63.158 1.90 0.00 43.43 3.86
23 24 4.373116 GAGTGGCCGGTGAAGCGA 62.373 66.667 1.90 0.00 0.00 4.93
24 25 3.665675 GAGTGGCCGGTGAAGCGAT 62.666 63.158 1.90 0.00 0.00 4.58
25 26 3.499737 GTGGCCGGTGAAGCGATG 61.500 66.667 1.90 0.00 0.00 3.84
26 27 4.776322 TGGCCGGTGAAGCGATGG 62.776 66.667 1.90 0.00 0.00 3.51
27 28 4.467084 GGCCGGTGAAGCGATGGA 62.467 66.667 1.90 0.00 0.00 3.41
28 29 2.203070 GCCGGTGAAGCGATGGAT 60.203 61.111 1.90 0.00 0.00 3.41
29 30 2.247437 GCCGGTGAAGCGATGGATC 61.247 63.158 1.90 0.00 0.00 3.36
30 31 1.143838 CCGGTGAAGCGATGGATCA 59.856 57.895 3.03 0.00 0.00 2.92
31 32 0.250038 CCGGTGAAGCGATGGATCAT 60.250 55.000 3.03 0.00 0.00 2.45
32 33 1.143305 CGGTGAAGCGATGGATCATC 58.857 55.000 0.00 0.00 37.50 2.92
33 34 1.538849 CGGTGAAGCGATGGATCATCA 60.539 52.381 8.38 0.00 40.54 3.07
34 35 2.775890 GGTGAAGCGATGGATCATCAT 58.224 47.619 8.38 0.00 40.54 2.45
35 36 2.740981 GGTGAAGCGATGGATCATCATC 59.259 50.000 8.38 0.00 40.54 2.92
36 37 3.556633 GGTGAAGCGATGGATCATCATCT 60.557 47.826 9.42 2.38 40.54 2.90
37 38 3.679025 GTGAAGCGATGGATCATCATCTC 59.321 47.826 9.42 3.09 40.54 2.75
38 39 3.260740 GAAGCGATGGATCATCATCTCC 58.739 50.000 9.42 2.55 40.54 3.71
39 40 2.538222 AGCGATGGATCATCATCTCCT 58.462 47.619 9.42 4.29 40.54 3.69
40 41 2.496871 AGCGATGGATCATCATCTCCTC 59.503 50.000 9.42 0.00 40.54 3.71
41 42 2.418471 GCGATGGATCATCATCTCCTCC 60.418 54.545 9.42 0.00 40.54 4.30
42 43 2.159268 CGATGGATCATCATCTCCTCCG 60.159 54.545 9.42 0.00 40.54 4.63
43 44 2.683211 TGGATCATCATCTCCTCCGA 57.317 50.000 0.00 0.00 32.47 4.55
44 45 2.242926 TGGATCATCATCTCCTCCGAC 58.757 52.381 0.00 0.00 32.47 4.79
45 46 1.548269 GGATCATCATCTCCTCCGACC 59.452 57.143 0.00 0.00 0.00 4.79
46 47 1.201181 GATCATCATCTCCTCCGACCG 59.799 57.143 0.00 0.00 0.00 4.79
47 48 0.823769 TCATCATCTCCTCCGACCGG 60.824 60.000 0.00 0.00 0.00 5.28
48 49 2.203771 ATCATCTCCTCCGACCGGC 61.204 63.158 0.00 0.00 34.68 6.13
49 50 3.917760 CATCTCCTCCGACCGGCC 61.918 72.222 0.00 0.00 34.68 6.13
58 59 4.676586 CGACCGGCCGCAAAACAC 62.677 66.667 22.85 4.05 0.00 3.32
59 60 3.587933 GACCGGCCGCAAAACACA 61.588 61.111 22.85 0.00 0.00 3.72
60 61 3.817274 GACCGGCCGCAAAACACAC 62.817 63.158 22.85 0.00 0.00 3.82
61 62 3.893763 CCGGCCGCAAAACACACA 61.894 61.111 22.85 0.00 0.00 3.72
62 63 2.103143 CGGCCGCAAAACACACAA 59.897 55.556 14.67 0.00 0.00 3.33
63 64 2.227568 CGGCCGCAAAACACACAAC 61.228 57.895 14.67 0.00 0.00 3.32
64 65 1.153745 GGCCGCAAAACACACAACA 60.154 52.632 0.00 0.00 0.00 3.33
65 66 0.737715 GGCCGCAAAACACACAACAA 60.738 50.000 0.00 0.00 0.00 2.83
66 67 0.644843 GCCGCAAAACACACAACAAG 59.355 50.000 0.00 0.00 0.00 3.16
67 68 1.276415 CCGCAAAACACACAACAAGG 58.724 50.000 0.00 0.00 0.00 3.61
68 69 1.403514 CCGCAAAACACACAACAAGGT 60.404 47.619 0.00 0.00 0.00 3.50
69 70 1.653114 CGCAAAACACACAACAAGGTG 59.347 47.619 0.00 0.00 44.35 4.00
70 71 1.393196 GCAAAACACACAACAAGGTGC 59.607 47.619 0.00 0.00 42.55 5.01
71 72 2.681706 CAAAACACACAACAAGGTGCA 58.318 42.857 0.00 0.00 42.55 4.57
72 73 3.260740 CAAAACACACAACAAGGTGCAT 58.739 40.909 0.00 0.00 42.55 3.96
73 74 4.428209 CAAAACACACAACAAGGTGCATA 58.572 39.130 0.00 0.00 42.55 3.14
74 75 3.708563 AACACACAACAAGGTGCATAC 57.291 42.857 0.00 0.00 42.55 2.39
75 76 2.930950 ACACACAACAAGGTGCATACT 58.069 42.857 0.00 0.00 42.55 2.12
76 77 2.618241 ACACACAACAAGGTGCATACTG 59.382 45.455 0.00 0.00 42.55 2.74
77 78 2.877786 CACACAACAAGGTGCATACTGA 59.122 45.455 0.00 0.00 42.55 3.41
78 79 3.314913 CACACAACAAGGTGCATACTGAA 59.685 43.478 0.00 0.00 42.55 3.02
79 80 3.565482 ACACAACAAGGTGCATACTGAAG 59.435 43.478 0.00 0.00 42.55 3.02
80 81 3.058016 CACAACAAGGTGCATACTGAAGG 60.058 47.826 0.00 0.00 31.10 3.46
81 82 1.826385 ACAAGGTGCATACTGAAGGC 58.174 50.000 0.00 0.00 0.00 4.35
82 83 1.073763 ACAAGGTGCATACTGAAGGCA 59.926 47.619 0.00 0.00 34.70 4.75
87 88 1.167851 TGCATACTGAAGGCACAAGC 58.832 50.000 0.00 0.00 41.10 4.01
97 98 3.096791 GCACAAGCCGCTCTCATC 58.903 61.111 0.00 0.00 33.58 2.92
98 99 1.742880 GCACAAGCCGCTCTCATCA 60.743 57.895 0.00 0.00 33.58 3.07
99 100 1.094073 GCACAAGCCGCTCTCATCAT 61.094 55.000 0.00 0.00 33.58 2.45
100 101 1.807755 GCACAAGCCGCTCTCATCATA 60.808 52.381 0.00 0.00 33.58 2.15
101 102 2.133553 CACAAGCCGCTCTCATCATAG 58.866 52.381 0.00 0.00 0.00 2.23
102 103 1.146637 CAAGCCGCTCTCATCATAGC 58.853 55.000 0.00 0.00 35.33 2.97
103 104 0.755079 AAGCCGCTCTCATCATAGCA 59.245 50.000 0.00 0.00 38.70 3.49
104 105 0.317799 AGCCGCTCTCATCATAGCAG 59.682 55.000 0.00 0.00 38.70 4.24
105 106 0.033228 GCCGCTCTCATCATAGCAGT 59.967 55.000 0.00 0.00 38.70 4.40
106 107 1.539929 GCCGCTCTCATCATAGCAGTT 60.540 52.381 0.00 0.00 38.70 3.16
107 108 2.133553 CCGCTCTCATCATAGCAGTTG 58.866 52.381 0.00 0.00 38.70 3.16
108 109 2.482664 CCGCTCTCATCATAGCAGTTGT 60.483 50.000 0.00 0.00 38.70 3.32
109 110 3.193263 CGCTCTCATCATAGCAGTTGTT 58.807 45.455 0.00 0.00 38.70 2.83
110 111 3.001026 CGCTCTCATCATAGCAGTTGTTG 59.999 47.826 0.00 0.00 38.70 3.33
111 112 3.311871 GCTCTCATCATAGCAGTTGTTGG 59.688 47.826 0.00 0.00 38.63 3.77
112 113 4.763073 CTCTCATCATAGCAGTTGTTGGA 58.237 43.478 0.00 0.00 0.00 3.53
113 114 5.164620 TCTCATCATAGCAGTTGTTGGAA 57.835 39.130 0.00 0.00 0.00 3.53
114 115 5.181009 TCTCATCATAGCAGTTGTTGGAAG 58.819 41.667 0.00 0.00 0.00 3.46
115 116 4.910195 TCATCATAGCAGTTGTTGGAAGT 58.090 39.130 0.00 0.00 0.00 3.01
116 117 4.696877 TCATCATAGCAGTTGTTGGAAGTG 59.303 41.667 0.00 0.00 0.00 3.16
117 118 4.085357 TCATAGCAGTTGTTGGAAGTGT 57.915 40.909 0.00 0.00 0.00 3.55
118 119 5.222079 TCATAGCAGTTGTTGGAAGTGTA 57.778 39.130 0.00 0.00 0.00 2.90
119 120 5.237815 TCATAGCAGTTGTTGGAAGTGTAG 58.762 41.667 0.00 0.00 0.00 2.74
120 121 3.560636 AGCAGTTGTTGGAAGTGTAGT 57.439 42.857 0.00 0.00 0.00 2.73
121 122 3.467803 AGCAGTTGTTGGAAGTGTAGTC 58.532 45.455 0.00 0.00 0.00 2.59
122 123 2.221055 GCAGTTGTTGGAAGTGTAGTCG 59.779 50.000 0.00 0.00 0.00 4.18
123 124 3.454375 CAGTTGTTGGAAGTGTAGTCGT 58.546 45.455 0.00 0.00 0.00 4.34
124 125 3.489785 CAGTTGTTGGAAGTGTAGTCGTC 59.510 47.826 0.00 0.00 0.00 4.20
125 126 2.798847 GTTGTTGGAAGTGTAGTCGTCC 59.201 50.000 0.00 0.00 36.71 4.79
126 127 2.033372 TGTTGGAAGTGTAGTCGTCCA 58.967 47.619 0.00 0.00 42.34 4.02
127 128 2.631062 TGTTGGAAGTGTAGTCGTCCAT 59.369 45.455 2.70 0.00 43.17 3.41
128 129 3.827876 TGTTGGAAGTGTAGTCGTCCATA 59.172 43.478 2.70 0.00 43.17 2.74
129 130 4.281435 TGTTGGAAGTGTAGTCGTCCATAA 59.719 41.667 2.70 0.00 43.17 1.90
130 131 5.046878 TGTTGGAAGTGTAGTCGTCCATAAT 60.047 40.000 2.70 0.00 43.17 1.28
131 132 5.258456 TGGAAGTGTAGTCGTCCATAATC 57.742 43.478 0.00 0.00 40.05 1.75
132 133 4.098960 TGGAAGTGTAGTCGTCCATAATCC 59.901 45.833 0.00 0.00 40.05 3.01
133 134 4.098960 GGAAGTGTAGTCGTCCATAATCCA 59.901 45.833 0.00 0.00 36.32 3.41
134 135 5.394883 GGAAGTGTAGTCGTCCATAATCCAA 60.395 44.000 0.00 0.00 36.32 3.53
135 136 5.871396 AGTGTAGTCGTCCATAATCCAAT 57.129 39.130 0.00 0.00 0.00 3.16
136 137 6.971726 AGTGTAGTCGTCCATAATCCAATA 57.028 37.500 0.00 0.00 0.00 1.90
137 138 6.746120 AGTGTAGTCGTCCATAATCCAATAC 58.254 40.000 0.00 0.00 0.00 1.89
138 139 5.924825 GTGTAGTCGTCCATAATCCAATACC 59.075 44.000 0.00 0.00 0.00 2.73
139 140 5.599242 TGTAGTCGTCCATAATCCAATACCA 59.401 40.000 0.00 0.00 0.00 3.25
140 141 5.623956 AGTCGTCCATAATCCAATACCAA 57.376 39.130 0.00 0.00 0.00 3.67
141 142 5.996644 AGTCGTCCATAATCCAATACCAAA 58.003 37.500 0.00 0.00 0.00 3.28
142 143 6.055588 AGTCGTCCATAATCCAATACCAAAG 58.944 40.000 0.00 0.00 0.00 2.77
143 144 5.238650 GTCGTCCATAATCCAATACCAAAGG 59.761 44.000 0.00 0.00 0.00 3.11
144 145 4.518970 CGTCCATAATCCAATACCAAAGGG 59.481 45.833 0.00 0.00 41.29 3.95
145 146 5.689031 CGTCCATAATCCAATACCAAAGGGA 60.689 44.000 0.00 0.00 38.05 4.20
146 147 5.770162 GTCCATAATCCAATACCAAAGGGAG 59.230 44.000 0.00 0.00 38.05 4.30
147 148 5.674496 TCCATAATCCAATACCAAAGGGAGA 59.326 40.000 0.00 0.00 38.05 3.71
148 149 5.770162 CCATAATCCAATACCAAAGGGAGAC 59.230 44.000 0.00 0.00 38.05 3.36
149 150 3.560636 ATCCAATACCAAAGGGAGACG 57.439 47.619 0.00 0.00 38.05 4.18
150 151 1.065709 TCCAATACCAAAGGGAGACGC 60.066 52.381 0.00 0.00 38.05 5.19
151 152 1.379527 CAATACCAAAGGGAGACGCC 58.620 55.000 0.00 0.00 38.05 5.68
152 153 1.065418 CAATACCAAAGGGAGACGCCT 60.065 52.381 0.00 0.00 38.05 5.52
153 154 2.169769 CAATACCAAAGGGAGACGCCTA 59.830 50.000 0.00 0.00 38.05 3.93
154 155 1.481871 TACCAAAGGGAGACGCCTAG 58.518 55.000 0.00 0.00 38.05 3.02
155 156 1.153349 CCAAAGGGAGACGCCTAGC 60.153 63.158 0.00 0.00 35.59 3.42
156 157 1.596934 CAAAGGGAGACGCCTAGCA 59.403 57.895 0.00 0.00 36.66 3.49
157 158 0.179000 CAAAGGGAGACGCCTAGCAT 59.821 55.000 0.00 0.00 36.66 3.79
158 159 0.179000 AAAGGGAGACGCCTAGCATG 59.821 55.000 0.00 0.00 36.66 4.06
159 160 0.687757 AAGGGAGACGCCTAGCATGA 60.688 55.000 0.00 0.00 36.66 3.07
160 161 0.470833 AGGGAGACGCCTAGCATGAT 60.471 55.000 0.00 0.00 36.66 2.45
161 162 0.320247 GGGAGACGCCTAGCATGATG 60.320 60.000 0.00 0.00 36.66 3.07
162 163 0.948141 GGAGACGCCTAGCATGATGC 60.948 60.000 9.89 9.89 45.46 3.91
192 193 4.577677 TGCGCACCCTGAGCCAAA 62.578 61.111 5.66 0.00 42.67 3.28
193 194 4.043200 GCGCACCCTGAGCCAAAC 62.043 66.667 0.30 0.00 37.20 2.93
194 195 3.365265 CGCACCCTGAGCCAAACC 61.365 66.667 0.00 0.00 0.00 3.27
195 196 2.116125 GCACCCTGAGCCAAACCT 59.884 61.111 0.00 0.00 0.00 3.50
196 197 1.973812 GCACCCTGAGCCAAACCTC 60.974 63.158 0.00 0.00 0.00 3.85
197 198 1.672356 CACCCTGAGCCAAACCTCG 60.672 63.158 0.00 0.00 34.56 4.63
198 199 1.841556 ACCCTGAGCCAAACCTCGA 60.842 57.895 0.00 0.00 34.56 4.04
199 200 1.374947 CCCTGAGCCAAACCTCGAA 59.625 57.895 0.00 0.00 34.56 3.71
200 201 0.674895 CCCTGAGCCAAACCTCGAAG 60.675 60.000 0.00 0.00 34.56 3.79
201 202 0.035458 CCTGAGCCAAACCTCGAAGT 59.965 55.000 0.00 0.00 34.56 3.01
202 203 1.275291 CCTGAGCCAAACCTCGAAGTA 59.725 52.381 0.00 0.00 34.56 2.24
203 204 2.093447 CCTGAGCCAAACCTCGAAGTAT 60.093 50.000 0.00 0.00 34.56 2.12
204 205 3.600388 CTGAGCCAAACCTCGAAGTATT 58.400 45.455 0.00 0.00 34.56 1.89
205 206 3.334691 TGAGCCAAACCTCGAAGTATTG 58.665 45.455 0.00 0.00 34.56 1.90
206 207 2.084546 AGCCAAACCTCGAAGTATTGC 58.915 47.619 0.00 0.00 0.00 3.56
207 208 1.132453 GCCAAACCTCGAAGTATTGCC 59.868 52.381 0.00 0.00 0.00 4.52
208 209 1.743394 CCAAACCTCGAAGTATTGCCC 59.257 52.381 0.00 0.00 0.00 5.36
209 210 1.743394 CAAACCTCGAAGTATTGCCCC 59.257 52.381 0.00 0.00 0.00 5.80
210 211 0.988832 AACCTCGAAGTATTGCCCCA 59.011 50.000 0.00 0.00 0.00 4.96
211 212 0.988832 ACCTCGAAGTATTGCCCCAA 59.011 50.000 0.00 0.00 0.00 4.12
212 213 1.065418 ACCTCGAAGTATTGCCCCAAG 60.065 52.381 0.00 0.00 0.00 3.61
213 214 1.017387 CTCGAAGTATTGCCCCAAGC 58.983 55.000 0.00 0.00 44.14 4.01
214 215 0.393808 TCGAAGTATTGCCCCAAGCC 60.394 55.000 0.00 0.00 42.71 4.35
215 216 1.384222 CGAAGTATTGCCCCAAGCCC 61.384 60.000 0.00 0.00 42.71 5.19
216 217 0.033109 GAAGTATTGCCCCAAGCCCT 60.033 55.000 0.00 0.00 42.71 5.19
217 218 1.214424 GAAGTATTGCCCCAAGCCCTA 59.786 52.381 0.00 0.00 42.71 3.53
218 219 1.304891 AGTATTGCCCCAAGCCCTAA 58.695 50.000 0.00 0.00 42.71 2.69
219 220 1.215423 AGTATTGCCCCAAGCCCTAAG 59.785 52.381 0.00 0.00 42.71 2.18
220 221 0.555769 TATTGCCCCAAGCCCTAAGG 59.444 55.000 0.00 0.00 42.71 2.69
238 239 4.995594 CCAAAGGGCTCAGATCCC 57.004 61.111 0.32 0.32 44.25 3.85
239 240 1.228510 CCAAAGGGCTCAGATCCCC 59.771 63.158 5.64 1.96 45.03 4.81
244 245 3.249119 GGGCTCAGATCCCCTAACT 57.751 57.895 0.00 0.00 38.30 2.24
245 246 0.761802 GGGCTCAGATCCCCTAACTG 59.238 60.000 0.00 0.00 38.30 3.16
246 247 1.501582 GGCTCAGATCCCCTAACTGT 58.498 55.000 0.00 0.00 33.93 3.55
247 248 1.139853 GGCTCAGATCCCCTAACTGTG 59.860 57.143 0.00 0.00 33.93 3.66
248 249 1.474143 GCTCAGATCCCCTAACTGTGC 60.474 57.143 0.00 0.00 41.40 4.57
249 250 0.824109 TCAGATCCCCTAACTGTGCG 59.176 55.000 0.00 0.00 33.93 5.34
250 251 0.824109 CAGATCCCCTAACTGTGCGA 59.176 55.000 0.00 0.00 0.00 5.10
251 252 0.824759 AGATCCCCTAACTGTGCGAC 59.175 55.000 0.00 0.00 0.00 5.19
252 253 0.535335 GATCCCCTAACTGTGCGACA 59.465 55.000 0.00 0.00 0.00 4.35
253 254 1.139058 GATCCCCTAACTGTGCGACAT 59.861 52.381 0.00 0.00 0.00 3.06
254 255 0.535335 TCCCCTAACTGTGCGACATC 59.465 55.000 0.00 0.00 0.00 3.06
255 256 0.462047 CCCCTAACTGTGCGACATCC 60.462 60.000 0.00 0.00 0.00 3.51
256 257 0.249120 CCCTAACTGTGCGACATCCA 59.751 55.000 0.00 0.00 0.00 3.41
257 258 1.134401 CCCTAACTGTGCGACATCCAT 60.134 52.381 0.00 0.00 0.00 3.41
258 259 2.205074 CCTAACTGTGCGACATCCATC 58.795 52.381 0.00 0.00 0.00 3.51
259 260 1.854743 CTAACTGTGCGACATCCATCG 59.145 52.381 0.00 0.00 45.09 3.84
260 261 0.246360 AACTGTGCGACATCCATCGA 59.754 50.000 0.00 0.00 45.13 3.59
261 262 0.461548 ACTGTGCGACATCCATCGAT 59.538 50.000 0.00 0.00 45.13 3.59
284 285 3.447040 GCCAAAGCCTCTGCAACA 58.553 55.556 0.00 0.00 41.13 3.33
285 286 1.969862 GCCAAAGCCTCTGCAACAT 59.030 52.632 0.00 0.00 41.13 2.71
286 287 0.108945 GCCAAAGCCTCTGCAACATC 60.109 55.000 0.00 0.00 41.13 3.06
287 288 0.529378 CCAAAGCCTCTGCAACATCC 59.471 55.000 0.00 0.00 41.13 3.51
288 289 0.529378 CAAAGCCTCTGCAACATCCC 59.471 55.000 0.00 0.00 41.13 3.85
289 290 0.962356 AAAGCCTCTGCAACATCCCG 60.962 55.000 0.00 0.00 41.13 5.14
290 291 2.825836 GCCTCTGCAACATCCCGG 60.826 66.667 0.00 0.00 37.47 5.73
291 292 2.124570 CCTCTGCAACATCCCGGG 60.125 66.667 16.85 16.85 0.00 5.73
292 293 2.669133 CCTCTGCAACATCCCGGGA 61.669 63.158 29.18 29.18 0.00 5.14
293 294 1.153289 CTCTGCAACATCCCGGGAG 60.153 63.158 30.42 22.09 0.00 4.30
294 295 1.903877 CTCTGCAACATCCCGGGAGT 61.904 60.000 30.42 22.76 0.00 3.85
295 296 0.616395 TCTGCAACATCCCGGGAGTA 60.616 55.000 30.42 13.70 0.00 2.59
296 297 0.251916 CTGCAACATCCCGGGAGTAA 59.748 55.000 30.42 5.50 0.00 2.24
297 298 0.916086 TGCAACATCCCGGGAGTAAT 59.084 50.000 30.42 9.31 0.00 1.89
298 299 2.104111 CTGCAACATCCCGGGAGTAATA 59.896 50.000 30.42 12.26 0.00 0.98
299 300 2.708861 TGCAACATCCCGGGAGTAATAT 59.291 45.455 30.42 7.96 0.00 1.28
300 301 3.244422 TGCAACATCCCGGGAGTAATATC 60.244 47.826 30.42 14.26 0.00 1.63
301 302 3.868754 GCAACATCCCGGGAGTAATATCC 60.869 52.174 30.42 8.27 38.76 2.59
302 303 3.562108 ACATCCCGGGAGTAATATCCT 57.438 47.619 30.42 5.31 39.50 3.24
303 304 4.687262 ACATCCCGGGAGTAATATCCTA 57.313 45.455 30.42 0.00 39.50 2.94
304 305 4.611367 ACATCCCGGGAGTAATATCCTAG 58.389 47.826 30.42 8.50 39.50 3.02
305 306 4.294168 ACATCCCGGGAGTAATATCCTAGA 59.706 45.833 30.42 0.00 39.50 2.43
306 307 5.043281 ACATCCCGGGAGTAATATCCTAGAT 60.043 44.000 30.42 3.04 39.50 1.98
307 308 5.547631 TCCCGGGAGTAATATCCTAGATT 57.452 43.478 22.63 0.00 39.50 2.40
308 309 5.912103 TCCCGGGAGTAATATCCTAGATTT 58.088 41.667 22.63 0.00 39.50 2.17
309 310 6.328592 TCCCGGGAGTAATATCCTAGATTTT 58.671 40.000 22.63 0.00 39.50 1.82
310 311 6.790963 TCCCGGGAGTAATATCCTAGATTTTT 59.209 38.462 22.63 0.00 39.50 1.94
358 359 2.336088 CGCAGCAAACCAAGTGGG 59.664 61.111 1.69 0.00 44.81 4.61
359 360 2.192861 CGCAGCAAACCAAGTGGGA 61.193 57.895 1.69 0.00 41.15 4.37
360 361 1.662044 GCAGCAAACCAAGTGGGAG 59.338 57.895 1.69 0.00 41.15 4.30
361 362 1.809567 GCAGCAAACCAAGTGGGAGG 61.810 60.000 1.69 0.00 41.15 4.30
362 363 0.178992 CAGCAAACCAAGTGGGAGGA 60.179 55.000 1.69 0.00 41.15 3.71
363 364 0.555769 AGCAAACCAAGTGGGAGGAA 59.444 50.000 1.69 0.00 41.15 3.36
364 365 1.063266 AGCAAACCAAGTGGGAGGAAA 60.063 47.619 1.69 0.00 41.15 3.13
365 366 1.068588 GCAAACCAAGTGGGAGGAAAC 59.931 52.381 1.69 0.00 41.15 2.78
366 367 2.666317 CAAACCAAGTGGGAGGAAACT 58.334 47.619 1.69 0.00 41.00 2.66
367 368 3.827722 CAAACCAAGTGGGAGGAAACTA 58.172 45.455 1.69 0.00 38.78 2.24
368 369 3.790089 AACCAAGTGGGAGGAAACTAG 57.210 47.619 1.69 0.00 38.78 2.57
369 370 1.985895 ACCAAGTGGGAGGAAACTAGG 59.014 52.381 1.69 0.00 38.78 3.02
370 371 2.266279 CCAAGTGGGAGGAAACTAGGA 58.734 52.381 0.00 0.00 44.43 2.94
371 372 2.237392 CCAAGTGGGAGGAAACTAGGAG 59.763 54.545 0.00 0.00 44.43 3.69
372 373 1.574263 AGTGGGAGGAAACTAGGAGC 58.426 55.000 0.00 0.00 44.43 4.70
373 374 1.079658 AGTGGGAGGAAACTAGGAGCT 59.920 52.381 0.00 0.00 44.43 4.09
374 375 2.315155 AGTGGGAGGAAACTAGGAGCTA 59.685 50.000 0.00 0.00 44.43 3.32
375 376 3.105283 GTGGGAGGAAACTAGGAGCTAA 58.895 50.000 0.00 0.00 44.43 3.09
376 377 3.712218 GTGGGAGGAAACTAGGAGCTAAT 59.288 47.826 0.00 0.00 44.43 1.73
377 378 4.164413 GTGGGAGGAAACTAGGAGCTAATT 59.836 45.833 0.00 0.00 44.43 1.40
378 379 4.164221 TGGGAGGAAACTAGGAGCTAATTG 59.836 45.833 0.00 0.00 44.43 2.32
379 380 4.130857 GGAGGAAACTAGGAGCTAATTGC 58.869 47.826 0.00 0.00 44.43 3.56
392 393 4.970662 GCTAATTGCTTTCCATCAGTGA 57.029 40.909 0.00 0.00 38.95 3.41
393 394 5.314923 GCTAATTGCTTTCCATCAGTGAA 57.685 39.130 0.00 0.00 38.95 3.18
394 395 5.098211 GCTAATTGCTTTCCATCAGTGAAC 58.902 41.667 0.00 0.00 38.95 3.18
395 396 5.335897 GCTAATTGCTTTCCATCAGTGAACA 60.336 40.000 0.00 0.00 38.95 3.18
396 397 3.988379 TTGCTTTCCATCAGTGAACAC 57.012 42.857 0.00 0.00 0.00 3.32
397 398 2.929641 TGCTTTCCATCAGTGAACACA 58.070 42.857 0.00 0.00 0.00 3.72
398 399 3.489355 TGCTTTCCATCAGTGAACACAT 58.511 40.909 0.00 0.00 0.00 3.21
399 400 3.890756 TGCTTTCCATCAGTGAACACATT 59.109 39.130 0.00 0.00 0.00 2.71
400 401 4.232221 GCTTTCCATCAGTGAACACATTG 58.768 43.478 0.00 0.00 0.00 2.82
401 402 4.261741 GCTTTCCATCAGTGAACACATTGT 60.262 41.667 0.00 0.00 0.00 2.71
402 403 4.834357 TTCCATCAGTGAACACATTGTG 57.166 40.909 15.18 15.18 39.75 3.33
403 404 4.084011 TCCATCAGTGAACACATTGTGA 57.916 40.909 23.12 0.00 36.96 3.58
404 405 3.814842 TCCATCAGTGAACACATTGTGAC 59.185 43.478 23.12 15.55 36.96 3.67
405 406 3.817084 CCATCAGTGAACACATTGTGACT 59.183 43.478 23.12 12.98 36.96 3.41
406 407 4.276678 CCATCAGTGAACACATTGTGACTT 59.723 41.667 23.12 8.02 36.96 3.01
407 408 5.221106 CCATCAGTGAACACATTGTGACTTT 60.221 40.000 23.12 7.29 36.96 2.66
408 409 5.895636 TCAGTGAACACATTGTGACTTTT 57.104 34.783 23.12 6.92 36.96 2.27
409 410 5.639757 TCAGTGAACACATTGTGACTTTTG 58.360 37.500 23.12 14.15 36.96 2.44
410 411 5.182950 TCAGTGAACACATTGTGACTTTTGT 59.817 36.000 23.12 0.00 36.96 2.83
411 412 5.863397 CAGTGAACACATTGTGACTTTTGTT 59.137 36.000 23.12 5.11 36.96 2.83
412 413 6.033831 CAGTGAACACATTGTGACTTTTGTTC 59.966 38.462 23.12 13.81 42.00 3.18
413 414 6.071952 AGTGAACACATTGTGACTTTTGTTCT 60.072 34.615 23.12 6.08 42.10 3.01
414 415 6.251376 GTGAACACATTGTGACTTTTGTTCTC 59.749 38.462 23.12 10.90 42.10 2.87
415 416 5.895636 ACACATTGTGACTTTTGTTCTCA 57.104 34.783 23.12 0.00 36.96 3.27
416 417 5.640732 ACACATTGTGACTTTTGTTCTCAC 58.359 37.500 23.12 0.00 36.96 3.51
417 418 5.036737 CACATTGTGACTTTTGTTCTCACC 58.963 41.667 11.45 0.00 35.23 4.02
418 419 4.949856 ACATTGTGACTTTTGTTCTCACCT 59.050 37.500 0.00 0.00 0.00 4.00
419 420 5.066505 ACATTGTGACTTTTGTTCTCACCTC 59.933 40.000 0.00 0.00 0.00 3.85
420 421 4.487714 TGTGACTTTTGTTCTCACCTCT 57.512 40.909 0.00 0.00 0.00 3.69
421 422 5.607939 TGTGACTTTTGTTCTCACCTCTA 57.392 39.130 0.00 0.00 0.00 2.43
422 423 5.984725 TGTGACTTTTGTTCTCACCTCTAA 58.015 37.500 0.00 0.00 0.00 2.10
423 424 6.591935 TGTGACTTTTGTTCTCACCTCTAAT 58.408 36.000 0.00 0.00 0.00 1.73
424 425 7.054124 TGTGACTTTTGTTCTCACCTCTAATT 58.946 34.615 0.00 0.00 0.00 1.40
425 426 8.208224 TGTGACTTTTGTTCTCACCTCTAATTA 58.792 33.333 0.00 0.00 0.00 1.40
426 427 9.052759 GTGACTTTTGTTCTCACCTCTAATTAA 57.947 33.333 0.00 0.00 0.00 1.40
427 428 9.621629 TGACTTTTGTTCTCACCTCTAATTAAA 57.378 29.630 0.00 0.00 0.00 1.52
428 429 9.880064 GACTTTTGTTCTCACCTCTAATTAAAC 57.120 33.333 0.00 0.00 0.00 2.01
429 430 9.628500 ACTTTTGTTCTCACCTCTAATTAAACT 57.372 29.630 0.00 0.00 0.00 2.66
434 435 9.886132 TGTTCTCACCTCTAATTAAACTAATCC 57.114 33.333 0.00 0.00 0.00 3.01
440 441 9.788960 CACCTCTAATTAAACTAATCCTTTTGC 57.211 33.333 0.00 0.00 0.00 3.68
441 442 9.528489 ACCTCTAATTAAACTAATCCTTTTGCA 57.472 29.630 0.00 0.00 0.00 4.08
450 451 7.396540 AACTAATCCTTTTGCATCTACAAGG 57.603 36.000 0.00 0.00 37.70 3.61
451 452 6.721318 ACTAATCCTTTTGCATCTACAAGGA 58.279 36.000 11.89 11.89 46.96 3.36
452 453 7.175104 ACTAATCCTTTTGCATCTACAAGGAA 58.825 34.615 12.97 1.86 46.22 3.36
453 454 6.521151 AATCCTTTTGCATCTACAAGGAAG 57.479 37.500 12.97 0.00 46.22 3.46
454 455 3.758554 TCCTTTTGCATCTACAAGGAAGC 59.241 43.478 8.58 0.00 41.54 3.86
455 456 3.507233 CCTTTTGCATCTACAAGGAAGCA 59.493 43.478 0.00 0.00 38.52 3.91
456 457 4.380233 CCTTTTGCATCTACAAGGAAGCAG 60.380 45.833 0.00 0.00 40.24 4.24
457 458 3.701205 TTGCATCTACAAGGAAGCAGA 57.299 42.857 0.00 0.00 40.24 4.26
458 459 3.701205 TGCATCTACAAGGAAGCAGAA 57.299 42.857 0.00 0.00 35.47 3.02
459 460 3.603532 TGCATCTACAAGGAAGCAGAAG 58.396 45.455 0.00 0.00 35.47 2.85
460 461 3.261643 TGCATCTACAAGGAAGCAGAAGA 59.738 43.478 0.00 0.00 35.47 2.87
461 462 3.870419 GCATCTACAAGGAAGCAGAAGAG 59.130 47.826 0.00 0.00 31.33 2.85
462 463 4.382470 GCATCTACAAGGAAGCAGAAGAGA 60.382 45.833 0.00 0.00 31.33 3.10
463 464 5.728471 CATCTACAAGGAAGCAGAAGAGAA 58.272 41.667 0.00 0.00 0.00 2.87
464 465 5.140747 TCTACAAGGAAGCAGAAGAGAAC 57.859 43.478 0.00 0.00 0.00 3.01
465 466 3.845781 ACAAGGAAGCAGAAGAGAACA 57.154 42.857 0.00 0.00 0.00 3.18
466 467 4.363991 ACAAGGAAGCAGAAGAGAACAT 57.636 40.909 0.00 0.00 0.00 2.71
467 468 4.723309 ACAAGGAAGCAGAAGAGAACATT 58.277 39.130 0.00 0.00 0.00 2.71
468 469 5.136105 ACAAGGAAGCAGAAGAGAACATTT 58.864 37.500 0.00 0.00 0.00 2.32
492 493 6.389091 TGTATGTTACAACTTACTACCACCG 58.611 40.000 15.20 0.00 39.16 4.94
502 503 4.141642 ACTTACTACCACCGGTCTTTTTGT 60.142 41.667 2.59 1.67 37.09 2.83
507 508 3.408634 ACCACCGGTCTTTTTGTATCTG 58.591 45.455 2.59 0.00 0.00 2.90
510 511 4.062293 CACCGGTCTTTTTGTATCTGTCA 58.938 43.478 2.59 0.00 0.00 3.58
511 512 4.513692 CACCGGTCTTTTTGTATCTGTCAA 59.486 41.667 2.59 0.00 0.00 3.18
518 519 7.234384 GTCTTTTTGTATCTGTCAATACCACG 58.766 38.462 0.00 0.00 32.21 4.94
546 547 8.868635 AAGCAAAAGAAGAATCAAAGAAGAAG 57.131 30.769 0.00 0.00 0.00 2.85
547 548 6.922407 AGCAAAAGAAGAATCAAAGAAGAAGC 59.078 34.615 0.00 0.00 0.00 3.86
549 550 7.384387 GCAAAAGAAGAATCAAAGAAGAAGCAT 59.616 33.333 0.00 0.00 0.00 3.79
598 599 0.957395 ATGTGCAAGCGAGGAACCAG 60.957 55.000 0.00 0.00 0.00 4.00
602 603 1.798735 CAAGCGAGGAACCAGCATG 59.201 57.895 12.14 7.73 0.00 4.06
617 618 2.365901 ATGGGCCATGCTTTGGGG 60.366 61.111 20.49 0.00 46.55 4.96
618 619 2.945904 ATGGGCCATGCTTTGGGGA 61.946 57.895 20.49 0.00 46.55 4.81
641 642 4.153117 AGAGAGAAAGCAAAGCAATGTACG 59.847 41.667 0.00 0.00 0.00 3.67
642 643 3.815401 AGAGAAAGCAAAGCAATGTACGT 59.185 39.130 0.00 0.00 0.00 3.57
643 644 3.888934 AGAAAGCAAAGCAATGTACGTG 58.111 40.909 0.00 0.00 0.00 4.49
644 645 2.050477 AAGCAAAGCAATGTACGTGC 57.950 45.000 12.25 12.25 42.55 5.34
645 646 0.110238 AGCAAAGCAATGTACGTGCG 60.110 50.000 13.80 3.82 46.86 5.34
647 648 1.465689 GCAAAGCAATGTACGTGCGAT 60.466 47.619 13.80 6.36 46.86 4.58
687 1233 2.054363 CACAGAACACACACTCTAGCG 58.946 52.381 0.00 0.00 0.00 4.26
705 1251 6.792326 TCTAGCGACCCACGATATATTATTG 58.208 40.000 0.00 0.00 41.89 1.90
753 1299 2.125350 GCTCAAGCTCACGGGGAG 60.125 66.667 1.99 1.99 46.93 4.30
786 1332 5.991328 ATGCACTTATACTTCAACGGATG 57.009 39.130 0.00 0.00 0.00 3.51
793 1339 1.588674 ACTTCAACGGATGCGAAACA 58.411 45.000 15.49 0.00 0.00 2.83
797 1343 0.871722 CAACGGATGCGAAACAAGGA 59.128 50.000 15.49 0.00 0.00 3.36
816 1362 7.458397 ACAAGGATCCACAAACTAGTCATTTA 58.542 34.615 15.82 0.00 0.00 1.40
931 1477 7.807977 ACTTGACTGGCCTTATACATTAATG 57.192 36.000 14.01 14.01 0.00 1.90
947 1493 5.688621 ACATTAATGTTGCATCATTCATCGC 59.311 36.000 22.93 0.00 37.90 4.58
1142 1708 0.538057 TTCTTCTTGGCTGGCTGGTG 60.538 55.000 2.00 0.00 0.00 4.17
1179 1746 1.743996 CCTCTGCTGTTCTTAAGGCC 58.256 55.000 1.85 0.00 0.00 5.19
1212 1779 4.810790 TCCTGAAATCGAGAAGAAGTGAC 58.189 43.478 0.00 0.00 0.00 3.67
1220 1787 2.352225 CGAGAAGAAGTGACCCTGACAG 60.352 54.545 0.00 0.00 0.00 3.51
1422 1989 0.888619 TCGGAAGTGAGATCAACGCT 59.111 50.000 0.00 0.00 0.00 5.07
1561 2140 5.741011 TGTTATGGAGTGGTTATGGAAGAC 58.259 41.667 0.00 0.00 0.00 3.01
1789 2378 1.084370 AGAGCAACTACGCGGAATGC 61.084 55.000 18.43 18.43 41.47 3.56
1826 2415 4.827087 CGATGCACAGGCCGAGCT 62.827 66.667 16.18 0.00 40.13 4.09
1841 2430 3.689649 GCCGAGCTTAAGAAAAGATTCCA 59.310 43.478 6.67 0.00 36.12 3.53
1864 2453 7.451255 TCCAGAATCTGAAAATAAGAAAGCCAA 59.549 33.333 12.53 0.00 32.44 4.52
1905 2494 3.125316 GTCTTGACTTTGCTTGGGATACG 59.875 47.826 0.00 0.00 37.60 3.06
1910 2499 1.745087 CTTTGCTTGGGATACGCATGT 59.255 47.619 0.00 0.00 33.15 3.21
1936 2525 4.645535 CAACTACTGGATATGTGATGGGG 58.354 47.826 0.00 0.00 0.00 4.96
1991 2580 5.295292 GCAGTGCATTGTATGAAGTGATACT 59.705 40.000 11.09 0.00 41.03 2.12
2032 2621 7.676004 TCCATCTAACAGAACACAACTATTGA 58.324 34.615 0.00 0.00 0.00 2.57
2072 2667 6.096673 ACAAAGATTTAACCGCTGGATTTT 57.903 33.333 1.50 0.00 0.00 1.82
2181 2779 7.724305 TTCTCAACTACAACTACCAAATGAC 57.276 36.000 0.00 0.00 0.00 3.06
2188 2786 7.712797 ACTACAACTACCAAATGACCTTTTTG 58.287 34.615 0.00 0.00 34.55 2.44
2285 2890 7.741785 TCTTGTCACAACCTAAGATTCCTTTA 58.258 34.615 0.00 0.00 33.94 1.85
2286 2891 8.383175 TCTTGTCACAACCTAAGATTCCTTTAT 58.617 33.333 0.00 0.00 33.94 1.40
2290 2895 8.884726 GTCACAACCTAAGATTCCTTTATCTTC 58.115 37.037 2.39 0.00 42.39 2.87
2304 2909 6.211184 TCCTTTATCTTCACCATTGCACAAAT 59.789 34.615 0.00 0.00 0.00 2.32
2386 3012 1.134521 TCACGGAGTTTGTCTTGCTGT 60.135 47.619 0.00 0.00 41.61 4.40
2522 3152 3.645212 ACCGAATCCTCAGATGTGATCAT 59.355 43.478 0.00 0.00 36.95 2.45
2541 3171 3.054948 TCATGATGGACACATGCTCTTCA 60.055 43.478 0.00 0.00 43.03 3.02
2584 3214 3.318017 CTCCTTGACTTGTCTGGTAACG 58.682 50.000 2.35 0.00 42.51 3.18
2614 3244 2.417107 GCATCATTGCCGGAAATGACAA 60.417 45.455 35.42 17.70 46.46 3.18
2667 3297 0.318445 GTTGTTCCAGCTTGCAGCAG 60.318 55.000 10.16 2.94 45.56 4.24
2678 3314 1.131126 CTTGCAGCAGGTTGTATTCGG 59.869 52.381 0.00 0.00 0.00 4.30
2842 3492 0.687354 AGAGGGTTGTGCTCGATTGT 59.313 50.000 0.00 0.00 0.00 2.71
3192 3866 8.256605 CACCTCCATATTTCTACTATGATCCAG 58.743 40.741 0.00 0.00 0.00 3.86
3279 3956 2.110578 GGGCCCTTCTTACCTTACGTA 58.889 52.381 17.04 0.00 0.00 3.57
3311 3988 2.038387 AACAAGGACACTGTCACACC 57.962 50.000 11.34 0.00 33.68 4.16
3312 3989 1.204146 ACAAGGACACTGTCACACCT 58.796 50.000 11.34 0.00 33.68 4.00
3504 4187 2.416747 CTTCCAGCGTCAAGAACATCA 58.583 47.619 0.00 0.00 0.00 3.07
3661 4345 8.200792 GCATCTGGGGTAGAGATATTACATTAG 58.799 40.741 0.00 0.00 39.20 1.73
3677 4379 8.635877 ATTACATTAGACTTCTACAGCTTTCG 57.364 34.615 0.00 0.00 0.00 3.46
3679 4381 6.868622 ACATTAGACTTCTACAGCTTTCGAT 58.131 36.000 0.00 0.00 0.00 3.59
3691 4393 3.303495 CAGCTTTCGATACCTACAACACG 59.697 47.826 0.00 0.00 0.00 4.49
3740 4445 4.226620 GGTGTTTGTCCTCCCTATTTCCTA 59.773 45.833 0.00 0.00 0.00 2.94
3742 4447 4.226620 TGTTTGTCCTCCCTATTTCCTACC 59.773 45.833 0.00 0.00 0.00 3.18
3745 4450 3.246572 TGTCCTCCCTATTTCCTACCCAA 60.247 47.826 0.00 0.00 0.00 4.12
3756 4461 4.390129 TTCCTACCCAATGCCAAACTTA 57.610 40.909 0.00 0.00 0.00 2.24
3773 4478 5.923733 AACTTAGAGACCATTCAGATCGT 57.076 39.130 0.00 0.00 0.00 3.73
3782 4487 3.641436 ACCATTCAGATCGTATACTGCCA 59.359 43.478 0.56 0.00 34.57 4.92
3783 4488 4.100963 ACCATTCAGATCGTATACTGCCAA 59.899 41.667 0.56 0.00 34.57 4.52
3809 4514 1.270252 CCAACATGTTTTCCCACTGGC 60.270 52.381 8.77 0.00 0.00 4.85
3811 4516 0.105760 ACATGTTTTCCCACTGGCCA 60.106 50.000 4.71 4.71 0.00 5.36
3812 4517 0.318120 CATGTTTTCCCACTGGCCAC 59.682 55.000 0.00 0.00 0.00 5.01
3813 4518 0.831711 ATGTTTTCCCACTGGCCACC 60.832 55.000 0.00 0.00 0.00 4.61
3823 4531 2.672651 TGGCCACCAATGAGCACG 60.673 61.111 0.00 0.00 0.00 5.34
3852 4566 5.600069 AGAGATAGCATCTGGTGTCACATTA 59.400 40.000 5.12 0.00 40.38 1.90
3922 4639 1.976132 ATGCGGGGTCAGATCACTGG 61.976 60.000 0.00 0.00 43.60 4.00
3976 4693 4.410400 GTTGGGGCCTGAGACGGG 62.410 72.222 0.84 0.00 0.00 5.28
4211 4931 2.431782 AGCAAGCAGGTGTCATTGTTTT 59.568 40.909 0.00 0.00 0.00 2.43
4307 5060 1.812571 AGGTCAAGCGGCTTACAATTG 59.187 47.619 15.93 3.24 0.00 2.32
4344 5104 4.389374 TCACAACTCTCTGGATTGTTTCC 58.611 43.478 0.00 0.00 45.69 3.13
4384 5146 6.472686 TTGGCTTTTAAGTGTGGTTTACAT 57.527 33.333 0.00 0.00 42.24 2.29
4493 5255 5.391310 GGTGTGAGTATGCTTGACTGAATTG 60.391 44.000 0.00 0.00 0.00 2.32
4494 5256 4.696877 TGTGAGTATGCTTGACTGAATTGG 59.303 41.667 0.00 0.00 0.00 3.16
4495 5257 4.937620 GTGAGTATGCTTGACTGAATTGGA 59.062 41.667 0.00 0.00 0.00 3.53
4496 5258 5.587844 GTGAGTATGCTTGACTGAATTGGAT 59.412 40.000 0.00 0.00 0.00 3.41
4497 5259 6.094603 GTGAGTATGCTTGACTGAATTGGATT 59.905 38.462 0.00 0.00 0.00 3.01
4534 5296 3.146066 GGATTGGTGTGTGAAGCAAGTA 58.854 45.455 0.00 0.00 40.58 2.24
4792 5611 8.237811 ACCAAAGATCTAGCAAGAAAAGAAAA 57.762 30.769 0.00 0.00 34.73 2.29
4793 5612 8.355913 ACCAAAGATCTAGCAAGAAAAGAAAAG 58.644 33.333 0.00 0.00 34.73 2.27
4794 5613 8.571336 CCAAAGATCTAGCAAGAAAAGAAAAGA 58.429 33.333 0.00 0.00 34.73 2.52
4795 5614 9.956720 CAAAGATCTAGCAAGAAAAGAAAAGAA 57.043 29.630 0.00 0.00 34.73 2.52
4852 5671 4.666512 AGTGAAATGCATCTACCCAACTT 58.333 39.130 0.00 0.00 0.00 2.66
4869 5688 5.427378 CCAACTTGGAAAACCACAGAATTT 58.573 37.500 0.92 0.00 40.96 1.82
4936 5755 7.793927 AAACTTCCTTCTGCAGCTATATAAC 57.206 36.000 9.47 0.00 0.00 1.89
4937 5756 6.739331 ACTTCCTTCTGCAGCTATATAACT 57.261 37.500 9.47 0.00 0.00 2.24
4939 5758 7.213678 ACTTCCTTCTGCAGCTATATAACTTC 58.786 38.462 9.47 0.00 0.00 3.01
4944 5763 6.644248 TCTGCAGCTATATAACTTCGGTTA 57.356 37.500 9.47 0.00 43.46 2.85
4945 5764 7.046292 TCTGCAGCTATATAACTTCGGTTAA 57.954 36.000 9.47 0.00 42.71 2.01
4994 5813 8.424918 TCCTTGTCAAAATACCAAAAGCAAATA 58.575 29.630 0.00 0.00 0.00 1.40
5059 5878 6.800072 TGTACACATATGGATTACTGGTGA 57.200 37.500 7.80 0.00 0.00 4.02
5086 5905 7.342581 ACAAAAATGGTGGTTTTATGAACCTT 58.657 30.769 12.38 0.00 40.88 3.50
5096 5915 5.295540 GGTTTTATGAACCTTTTTGCAGCAA 59.704 36.000 2.83 2.83 37.34 3.91
5100 5919 4.040445 TGAACCTTTTTGCAGCAACTAC 57.960 40.909 7.54 0.00 0.00 2.73
5103 5922 2.290641 ACCTTTTTGCAGCAACTACGAG 59.709 45.455 7.54 1.72 0.00 4.18
5107 5926 4.461992 TTTTGCAGCAACTACGAGTTAC 57.538 40.909 7.54 0.00 36.03 2.50
5108 5927 3.380479 TTGCAGCAACTACGAGTTACT 57.620 42.857 2.83 0.00 36.03 2.24
5125 5944 4.216902 AGTTACTGGGAAAAATAACCGCAC 59.783 41.667 0.00 0.00 0.00 5.34
5126 5945 2.588620 ACTGGGAAAAATAACCGCACA 58.411 42.857 0.00 0.00 0.00 4.57
5130 5949 3.004944 TGGGAAAAATAACCGCACAGAAC 59.995 43.478 0.00 0.00 0.00 3.01
5131 5950 3.004944 GGGAAAAATAACCGCACAGAACA 59.995 43.478 0.00 0.00 0.00 3.18
5138 5957 7.631915 AAATAACCGCACAGAACAAAAATAC 57.368 32.000 0.00 0.00 0.00 1.89
5143 5962 6.608610 ACCGCACAGAACAAAAATACTTATC 58.391 36.000 0.00 0.00 0.00 1.75
5179 6001 1.516453 CAACAAACCAATGAACACGCG 59.484 47.619 3.53 3.53 0.00 6.01
5182 6004 0.591170 AAACCAATGAACACGCGGAG 59.409 50.000 12.47 4.93 0.00 4.63
5223 6045 7.004555 AGAAGTTTGGACCAAAATTTATCCC 57.995 36.000 27.99 17.31 40.78 3.85
5243 6065 3.066203 CCCGAAGCAGTTGTAACAAAACT 59.934 43.478 0.00 0.00 38.40 2.66
5260 6082 5.961810 CAAAACTAGTTTGCGGAAACATTG 58.038 37.500 30.29 21.31 43.51 2.82
5262 6084 3.219281 ACTAGTTTGCGGAAACATTGGT 58.781 40.909 30.29 17.65 43.51 3.67
5266 6088 4.555262 AGTTTGCGGAAACATTGGTATTG 58.445 39.130 30.29 0.00 43.51 1.90
5284 6106 5.008118 GGTATTGCCTTGTCAATCTAGCTTC 59.992 44.000 0.00 0.00 37.75 3.86
5285 6107 3.988976 TGCCTTGTCAATCTAGCTTCT 57.011 42.857 0.00 0.00 0.00 2.85
5286 6108 5.420725 TTGCCTTGTCAATCTAGCTTCTA 57.579 39.130 0.00 0.00 0.00 2.10
5287 6109 4.759782 TGCCTTGTCAATCTAGCTTCTAC 58.240 43.478 0.00 0.00 0.00 2.59
5288 6110 4.467795 TGCCTTGTCAATCTAGCTTCTACT 59.532 41.667 0.00 0.00 0.00 2.57
5289 6111 5.656859 TGCCTTGTCAATCTAGCTTCTACTA 59.343 40.000 0.00 0.00 0.00 1.82
5294 6116 8.932945 TTGTCAATCTAGCTTCTACTACATTG 57.067 34.615 0.00 0.00 32.74 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.750350 CTTCACCGGCCACTCCTT 59.250 61.111 0.00 0.00 0.00 3.36
4 5 4.021925 GCTTCACCGGCCACTCCT 62.022 66.667 0.00 0.00 0.00 3.69
8 9 3.499737 CATCGCTTCACCGGCCAC 61.500 66.667 0.00 0.00 0.00 5.01
9 10 4.776322 CCATCGCTTCACCGGCCA 62.776 66.667 0.00 0.00 0.00 5.36
10 11 3.757248 ATCCATCGCTTCACCGGCC 62.757 63.158 0.00 0.00 0.00 6.13
11 12 2.203070 ATCCATCGCTTCACCGGC 60.203 61.111 0.00 0.00 0.00 6.13
12 13 0.250038 ATGATCCATCGCTTCACCGG 60.250 55.000 0.00 0.00 0.00 5.28
13 14 1.143305 GATGATCCATCGCTTCACCG 58.857 55.000 0.00 0.00 31.01 4.94
14 15 2.245159 TGATGATCCATCGCTTCACC 57.755 50.000 0.00 0.00 43.14 4.02
15 16 3.661944 AGATGATGATCCATCGCTTCAC 58.338 45.455 6.38 0.00 45.61 3.18
16 17 3.306571 GGAGATGATGATCCATCGCTTCA 60.307 47.826 12.80 0.00 45.61 3.02
17 18 3.055963 AGGAGATGATGATCCATCGCTTC 60.056 47.826 12.80 6.75 45.61 3.86
18 19 2.905085 AGGAGATGATGATCCATCGCTT 59.095 45.455 12.80 5.48 45.61 4.68
19 20 2.496871 GAGGAGATGATGATCCATCGCT 59.503 50.000 12.80 7.43 45.61 4.93
20 21 2.418471 GGAGGAGATGATGATCCATCGC 60.418 54.545 7.01 7.01 45.61 4.58
21 22 2.159268 CGGAGGAGATGATGATCCATCG 60.159 54.545 6.38 0.00 45.61 3.84
22 23 3.095332 TCGGAGGAGATGATGATCCATC 58.905 50.000 4.31 4.31 42.37 3.51
23 24 2.830923 GTCGGAGGAGATGATGATCCAT 59.169 50.000 0.00 0.00 38.12 3.41
24 25 2.242926 GTCGGAGGAGATGATGATCCA 58.757 52.381 0.00 0.00 38.12 3.41
25 26 1.548269 GGTCGGAGGAGATGATGATCC 59.452 57.143 0.00 0.00 35.71 3.36
26 27 1.201181 CGGTCGGAGGAGATGATGATC 59.799 57.143 0.00 0.00 0.00 2.92
27 28 1.252175 CGGTCGGAGGAGATGATGAT 58.748 55.000 0.00 0.00 0.00 2.45
28 29 0.823769 CCGGTCGGAGGAGATGATGA 60.824 60.000 2.83 0.00 37.50 2.92
29 30 1.662608 CCGGTCGGAGGAGATGATG 59.337 63.158 2.83 0.00 37.50 3.07
30 31 2.203771 GCCGGTCGGAGGAGATGAT 61.204 63.158 14.15 0.00 37.50 2.45
31 32 2.833582 GCCGGTCGGAGGAGATGA 60.834 66.667 14.15 0.00 37.50 2.92
32 33 3.917760 GGCCGGTCGGAGGAGATG 61.918 72.222 14.15 0.00 37.50 2.90
41 42 4.676586 GTGTTTTGCGGCCGGTCG 62.677 66.667 27.27 27.27 0.00 4.79
42 43 3.587933 TGTGTTTTGCGGCCGGTC 61.588 61.111 29.38 12.09 0.00 4.79
43 44 3.894947 GTGTGTTTTGCGGCCGGT 61.895 61.111 29.38 0.00 0.00 5.28
44 45 3.417275 TTGTGTGTTTTGCGGCCGG 62.417 57.895 29.38 8.95 0.00 6.13
45 46 2.103143 TTGTGTGTTTTGCGGCCG 59.897 55.556 24.05 24.05 0.00 6.13
46 47 0.737715 TTGTTGTGTGTTTTGCGGCC 60.738 50.000 0.00 0.00 0.00 6.13
47 48 0.644843 CTTGTTGTGTGTTTTGCGGC 59.355 50.000 0.00 0.00 0.00 6.53
48 49 1.276415 CCTTGTTGTGTGTTTTGCGG 58.724 50.000 0.00 0.00 0.00 5.69
49 50 1.653114 CACCTTGTTGTGTGTTTTGCG 59.347 47.619 0.00 0.00 0.00 4.85
50 51 1.393196 GCACCTTGTTGTGTGTTTTGC 59.607 47.619 0.00 0.00 38.52 3.68
51 52 2.681706 TGCACCTTGTTGTGTGTTTTG 58.318 42.857 0.00 0.00 38.52 2.44
52 53 3.608316 ATGCACCTTGTTGTGTGTTTT 57.392 38.095 0.00 0.00 38.52 2.43
53 54 3.699038 AGTATGCACCTTGTTGTGTGTTT 59.301 39.130 0.00 0.00 38.52 2.83
54 55 3.066621 CAGTATGCACCTTGTTGTGTGTT 59.933 43.478 0.00 0.00 38.52 3.32
55 56 2.618241 CAGTATGCACCTTGTTGTGTGT 59.382 45.455 0.00 0.00 38.52 3.72
56 57 2.877786 TCAGTATGCACCTTGTTGTGTG 59.122 45.455 0.00 0.00 38.52 3.82
57 58 3.207265 TCAGTATGCACCTTGTTGTGT 57.793 42.857 0.00 0.00 38.52 3.72
58 59 3.058016 CCTTCAGTATGCACCTTGTTGTG 60.058 47.826 0.00 0.00 39.29 3.33
59 60 3.149196 CCTTCAGTATGCACCTTGTTGT 58.851 45.455 0.00 0.00 34.76 3.32
60 61 2.095059 GCCTTCAGTATGCACCTTGTTG 60.095 50.000 0.00 0.00 34.76 3.33
61 62 2.162681 GCCTTCAGTATGCACCTTGTT 58.837 47.619 0.00 0.00 34.76 2.83
62 63 1.073763 TGCCTTCAGTATGCACCTTGT 59.926 47.619 0.00 0.00 34.76 3.16
63 64 1.825090 TGCCTTCAGTATGCACCTTG 58.175 50.000 0.00 0.00 34.76 3.61
68 69 1.167851 GCTTGTGCCTTCAGTATGCA 58.832 50.000 0.00 0.00 34.76 3.96
80 81 1.094073 ATGATGAGAGCGGCTTGTGC 61.094 55.000 2.97 0.00 38.76 4.57
81 82 2.133553 CTATGATGAGAGCGGCTTGTG 58.866 52.381 2.97 0.00 0.00 3.33
82 83 1.539929 GCTATGATGAGAGCGGCTTGT 60.540 52.381 2.97 0.00 0.00 3.16
83 84 1.146637 GCTATGATGAGAGCGGCTTG 58.853 55.000 2.97 0.00 0.00 4.01
84 85 0.755079 TGCTATGATGAGAGCGGCTT 59.245 50.000 2.97 0.00 39.45 4.35
85 86 0.317799 CTGCTATGATGAGAGCGGCT 59.682 55.000 0.00 0.00 39.45 5.52
86 87 0.033228 ACTGCTATGATGAGAGCGGC 59.967 55.000 7.59 0.00 45.28 6.53
87 88 2.133553 CAACTGCTATGATGAGAGCGG 58.866 52.381 6.04 6.04 46.56 5.52
88 89 2.819115 ACAACTGCTATGATGAGAGCG 58.181 47.619 0.00 0.00 39.45 5.03
89 90 3.311871 CCAACAACTGCTATGATGAGAGC 59.688 47.826 0.00 0.00 36.92 4.09
90 91 4.763073 TCCAACAACTGCTATGATGAGAG 58.237 43.478 0.00 0.00 0.00 3.20
91 92 4.824479 TCCAACAACTGCTATGATGAGA 57.176 40.909 0.00 0.00 0.00 3.27
92 93 4.940046 ACTTCCAACAACTGCTATGATGAG 59.060 41.667 0.00 0.00 0.00 2.90
93 94 4.696877 CACTTCCAACAACTGCTATGATGA 59.303 41.667 0.00 0.00 0.00 2.92
94 95 4.456911 ACACTTCCAACAACTGCTATGATG 59.543 41.667 0.00 0.00 0.00 3.07
95 96 4.655963 ACACTTCCAACAACTGCTATGAT 58.344 39.130 0.00 0.00 0.00 2.45
96 97 4.085357 ACACTTCCAACAACTGCTATGA 57.915 40.909 0.00 0.00 0.00 2.15
97 98 4.997395 ACTACACTTCCAACAACTGCTATG 59.003 41.667 0.00 0.00 0.00 2.23
98 99 5.228945 ACTACACTTCCAACAACTGCTAT 57.771 39.130 0.00 0.00 0.00 2.97
99 100 4.628074 GACTACACTTCCAACAACTGCTA 58.372 43.478 0.00 0.00 0.00 3.49
100 101 3.467803 GACTACACTTCCAACAACTGCT 58.532 45.455 0.00 0.00 0.00 4.24
101 102 2.221055 CGACTACACTTCCAACAACTGC 59.779 50.000 0.00 0.00 0.00 4.40
102 103 3.454375 ACGACTACACTTCCAACAACTG 58.546 45.455 0.00 0.00 0.00 3.16
103 104 3.492137 GGACGACTACACTTCCAACAACT 60.492 47.826 0.00 0.00 0.00 3.16
104 105 2.798847 GGACGACTACACTTCCAACAAC 59.201 50.000 0.00 0.00 0.00 3.32
105 106 2.431419 TGGACGACTACACTTCCAACAA 59.569 45.455 0.00 0.00 35.73 2.83
106 107 2.033372 TGGACGACTACACTTCCAACA 58.967 47.619 0.00 0.00 35.73 3.33
107 108 2.806608 TGGACGACTACACTTCCAAC 57.193 50.000 0.00 0.00 35.73 3.77
108 109 5.394883 GGATTATGGACGACTACACTTCCAA 60.395 44.000 0.00 0.00 40.57 3.53
109 110 4.098960 GGATTATGGACGACTACACTTCCA 59.901 45.833 0.00 0.00 41.23 3.53
110 111 4.098960 TGGATTATGGACGACTACACTTCC 59.901 45.833 0.00 0.00 0.00 3.46
111 112 5.258456 TGGATTATGGACGACTACACTTC 57.742 43.478 0.00 0.00 0.00 3.01
112 113 5.670792 TTGGATTATGGACGACTACACTT 57.329 39.130 0.00 0.00 0.00 3.16
113 114 5.871396 ATTGGATTATGGACGACTACACT 57.129 39.130 0.00 0.00 0.00 3.55
114 115 5.924825 GGTATTGGATTATGGACGACTACAC 59.075 44.000 0.00 0.00 0.00 2.90
115 116 5.599242 TGGTATTGGATTATGGACGACTACA 59.401 40.000 0.00 0.00 0.00 2.74
116 117 6.092955 TGGTATTGGATTATGGACGACTAC 57.907 41.667 0.00 0.00 0.00 2.73
117 118 6.734502 TTGGTATTGGATTATGGACGACTA 57.265 37.500 0.00 0.00 0.00 2.59
118 119 5.623956 TTGGTATTGGATTATGGACGACT 57.376 39.130 0.00 0.00 0.00 4.18
119 120 5.238650 CCTTTGGTATTGGATTATGGACGAC 59.761 44.000 0.00 0.00 0.00 4.34
120 121 5.373222 CCTTTGGTATTGGATTATGGACGA 58.627 41.667 0.00 0.00 0.00 4.20
121 122 4.518970 CCCTTTGGTATTGGATTATGGACG 59.481 45.833 0.00 0.00 0.00 4.79
122 123 5.701224 TCCCTTTGGTATTGGATTATGGAC 58.299 41.667 0.00 0.00 0.00 4.02
123 124 5.674496 TCTCCCTTTGGTATTGGATTATGGA 59.326 40.000 0.00 0.00 0.00 3.41
124 125 5.770162 GTCTCCCTTTGGTATTGGATTATGG 59.230 44.000 0.00 0.00 0.00 2.74
125 126 5.470098 CGTCTCCCTTTGGTATTGGATTATG 59.530 44.000 0.00 0.00 0.00 1.90
126 127 5.621193 CGTCTCCCTTTGGTATTGGATTAT 58.379 41.667 0.00 0.00 0.00 1.28
127 128 4.685030 GCGTCTCCCTTTGGTATTGGATTA 60.685 45.833 0.00 0.00 0.00 1.75
128 129 3.886123 CGTCTCCCTTTGGTATTGGATT 58.114 45.455 0.00 0.00 0.00 3.01
129 130 2.421529 GCGTCTCCCTTTGGTATTGGAT 60.422 50.000 0.00 0.00 0.00 3.41
130 131 1.065709 GCGTCTCCCTTTGGTATTGGA 60.066 52.381 0.00 0.00 0.00 3.53
131 132 1.379527 GCGTCTCCCTTTGGTATTGG 58.620 55.000 0.00 0.00 0.00 3.16
132 133 1.065418 AGGCGTCTCCCTTTGGTATTG 60.065 52.381 0.00 0.00 34.51 1.90
133 134 1.286248 AGGCGTCTCCCTTTGGTATT 58.714 50.000 0.00 0.00 34.51 1.89
134 135 2.040178 CTAGGCGTCTCCCTTTGGTAT 58.960 52.381 0.00 0.00 36.41 2.73
135 136 1.481871 CTAGGCGTCTCCCTTTGGTA 58.518 55.000 0.00 0.00 36.41 3.25
136 137 1.900545 GCTAGGCGTCTCCCTTTGGT 61.901 60.000 0.00 0.00 36.41 3.67
137 138 1.153349 GCTAGGCGTCTCCCTTTGG 60.153 63.158 0.00 0.00 36.41 3.28
138 139 0.179000 ATGCTAGGCGTCTCCCTTTG 59.821 55.000 0.00 0.00 36.41 2.77
139 140 0.179000 CATGCTAGGCGTCTCCCTTT 59.821 55.000 0.00 0.00 36.41 3.11
140 141 0.687757 TCATGCTAGGCGTCTCCCTT 60.688 55.000 0.00 0.00 36.41 3.95
141 142 0.470833 ATCATGCTAGGCGTCTCCCT 60.471 55.000 0.00 0.00 39.05 4.20
142 143 0.320247 CATCATGCTAGGCGTCTCCC 60.320 60.000 0.00 0.00 34.51 4.30
143 144 0.948141 GCATCATGCTAGGCGTCTCC 60.948 60.000 1.02 0.00 40.96 3.71
144 145 0.249615 TGCATCATGCTAGGCGTCTC 60.250 55.000 11.84 0.00 45.31 3.36
145 146 0.178767 TTGCATCATGCTAGGCGTCT 59.821 50.000 11.84 0.00 45.31 4.18
146 147 1.003116 CTTTGCATCATGCTAGGCGTC 60.003 52.381 11.84 0.00 45.31 5.19
147 148 1.019673 CTTTGCATCATGCTAGGCGT 58.980 50.000 11.84 0.00 45.31 5.68
148 149 1.019673 ACTTTGCATCATGCTAGGCG 58.980 50.000 11.84 0.00 45.31 5.52
149 150 2.805845 CAACTTTGCATCATGCTAGGC 58.194 47.619 11.84 0.00 45.31 3.93
162 163 2.355009 GCGCAGGGTGCAACTTTG 60.355 61.111 0.30 1.64 45.36 2.77
163 164 2.832661 TGCGCAGGGTGCAACTTT 60.833 55.556 5.66 0.00 46.28 2.66
175 176 4.577677 TTTGGCTCAGGGTGCGCA 62.578 61.111 5.66 5.66 0.00 6.09
176 177 4.043200 GTTTGGCTCAGGGTGCGC 62.043 66.667 0.00 0.00 0.00 6.09
177 178 3.365265 GGTTTGGCTCAGGGTGCG 61.365 66.667 0.00 0.00 0.00 5.34
178 179 1.973812 GAGGTTTGGCTCAGGGTGC 60.974 63.158 0.00 0.00 0.00 5.01
179 180 1.672356 CGAGGTTTGGCTCAGGGTG 60.672 63.158 0.00 0.00 0.00 4.61
180 181 1.415672 TTCGAGGTTTGGCTCAGGGT 61.416 55.000 0.00 0.00 0.00 4.34
181 182 0.674895 CTTCGAGGTTTGGCTCAGGG 60.675 60.000 0.00 0.00 0.00 4.45
182 183 0.035458 ACTTCGAGGTTTGGCTCAGG 59.965 55.000 0.00 0.00 0.00 3.86
183 184 2.743636 TACTTCGAGGTTTGGCTCAG 57.256 50.000 5.17 0.00 0.00 3.35
184 185 3.334691 CAATACTTCGAGGTTTGGCTCA 58.665 45.455 5.17 0.00 0.00 4.26
185 186 2.096013 GCAATACTTCGAGGTTTGGCTC 59.904 50.000 5.17 0.00 0.00 4.70
186 187 2.084546 GCAATACTTCGAGGTTTGGCT 58.915 47.619 5.17 0.00 0.00 4.75
187 188 1.132453 GGCAATACTTCGAGGTTTGGC 59.868 52.381 22.20 22.20 36.02 4.52
188 189 1.743394 GGGCAATACTTCGAGGTTTGG 59.257 52.381 5.17 0.00 0.00 3.28
189 190 1.743394 GGGGCAATACTTCGAGGTTTG 59.257 52.381 5.17 11.10 0.00 2.93
190 191 1.353022 TGGGGCAATACTTCGAGGTTT 59.647 47.619 5.17 0.00 0.00 3.27
191 192 0.988832 TGGGGCAATACTTCGAGGTT 59.011 50.000 5.17 0.00 0.00 3.50
192 193 0.988832 TTGGGGCAATACTTCGAGGT 59.011 50.000 5.23 5.23 0.00 3.85
193 194 1.668419 CTTGGGGCAATACTTCGAGG 58.332 55.000 0.00 0.00 0.00 4.63
194 195 1.017387 GCTTGGGGCAATACTTCGAG 58.983 55.000 0.00 0.00 41.35 4.04
195 196 0.393808 GGCTTGGGGCAATACTTCGA 60.394 55.000 0.00 0.00 44.01 3.71
196 197 1.384222 GGGCTTGGGGCAATACTTCG 61.384 60.000 0.00 0.00 44.01 3.79
197 198 0.033109 AGGGCTTGGGGCAATACTTC 60.033 55.000 0.00 0.00 44.01 3.01
198 199 1.304891 TAGGGCTTGGGGCAATACTT 58.695 50.000 0.00 0.00 44.01 2.24
199 200 1.215423 CTTAGGGCTTGGGGCAATACT 59.785 52.381 0.00 0.00 44.01 2.12
200 201 1.692411 CTTAGGGCTTGGGGCAATAC 58.308 55.000 0.00 0.00 44.01 1.89
201 202 0.555769 CCTTAGGGCTTGGGGCAATA 59.444 55.000 0.00 0.00 44.01 1.90
202 203 1.311059 CCTTAGGGCTTGGGGCAAT 59.689 57.895 0.00 0.00 44.01 3.56
203 204 2.770130 CCTTAGGGCTTGGGGCAA 59.230 61.111 0.00 0.00 44.01 4.52
221 222 1.228510 GGGGATCTGAGCCCTTTGG 59.771 63.158 28.55 0.00 45.30 3.28
222 223 1.511613 TAGGGGATCTGAGCCCTTTG 58.488 55.000 28.55 0.00 45.30 2.77
223 224 1.847088 GTTAGGGGATCTGAGCCCTTT 59.153 52.381 28.55 19.50 45.30 3.11
224 225 1.010170 AGTTAGGGGATCTGAGCCCTT 59.990 52.381 28.55 24.34 45.30 3.95
225 226 0.644937 AGTTAGGGGATCTGAGCCCT 59.355 55.000 28.55 17.39 45.30 5.19
226 227 0.761802 CAGTTAGGGGATCTGAGCCC 59.238 60.000 22.73 22.73 45.25 5.19
227 228 1.139853 CACAGTTAGGGGATCTGAGCC 59.860 57.143 2.64 2.64 33.93 4.70
228 229 1.474143 GCACAGTTAGGGGATCTGAGC 60.474 57.143 0.00 0.00 38.21 4.26
229 230 1.202463 CGCACAGTTAGGGGATCTGAG 60.202 57.143 0.00 0.00 33.93 3.35
230 231 0.824109 CGCACAGTTAGGGGATCTGA 59.176 55.000 0.00 0.00 33.93 3.27
231 232 0.824109 TCGCACAGTTAGGGGATCTG 59.176 55.000 0.00 0.00 35.60 2.90
232 233 0.824759 GTCGCACAGTTAGGGGATCT 59.175 55.000 0.00 0.00 0.00 2.75
233 234 0.535335 TGTCGCACAGTTAGGGGATC 59.465 55.000 0.00 0.00 0.00 3.36
234 235 1.139058 GATGTCGCACAGTTAGGGGAT 59.861 52.381 0.00 0.00 0.00 3.85
235 236 0.535335 GATGTCGCACAGTTAGGGGA 59.465 55.000 0.00 0.00 0.00 4.81
236 237 0.462047 GGATGTCGCACAGTTAGGGG 60.462 60.000 0.00 0.00 0.00 4.79
237 238 0.249120 TGGATGTCGCACAGTTAGGG 59.751 55.000 0.00 0.00 0.00 3.53
238 239 2.205074 GATGGATGTCGCACAGTTAGG 58.795 52.381 0.00 0.00 0.00 2.69
239 240 1.854743 CGATGGATGTCGCACAGTTAG 59.145 52.381 0.00 0.00 34.56 2.34
240 241 1.474879 TCGATGGATGTCGCACAGTTA 59.525 47.619 0.00 0.00 41.22 2.24
241 242 0.246360 TCGATGGATGTCGCACAGTT 59.754 50.000 0.00 0.00 41.22 3.16
242 243 0.461548 ATCGATGGATGTCGCACAGT 59.538 50.000 0.00 0.00 41.22 3.55
243 244 0.857287 CATCGATGGATGTCGCACAG 59.143 55.000 17.96 0.00 44.12 3.66
244 245 2.976271 CATCGATGGATGTCGCACA 58.024 52.632 17.96 0.00 44.12 4.57
255 256 0.313043 GCTTTGGCCATCCATCGATG 59.687 55.000 18.76 18.76 43.05 3.84
256 257 2.724520 GCTTTGGCCATCCATCGAT 58.275 52.632 6.09 0.00 43.05 3.59
257 258 4.240881 GCTTTGGCCATCCATCGA 57.759 55.556 6.09 0.00 43.05 3.59
267 268 0.108945 GATGTTGCAGAGGCTTTGGC 60.109 55.000 7.20 3.22 41.91 4.52
268 269 0.529378 GGATGTTGCAGAGGCTTTGG 59.471 55.000 7.20 0.00 41.91 3.28
269 270 0.529378 GGGATGTTGCAGAGGCTTTG 59.471 55.000 0.00 0.00 41.91 2.77
270 271 0.962356 CGGGATGTTGCAGAGGCTTT 60.962 55.000 0.00 0.00 41.91 3.51
271 272 1.377725 CGGGATGTTGCAGAGGCTT 60.378 57.895 0.00 0.00 41.91 4.35
272 273 2.270205 CGGGATGTTGCAGAGGCT 59.730 61.111 0.00 0.00 41.91 4.58
273 274 2.825836 CCGGGATGTTGCAGAGGC 60.826 66.667 0.00 0.00 41.68 4.70
274 275 2.124570 CCCGGGATGTTGCAGAGG 60.125 66.667 18.48 0.00 0.00 3.69
275 276 1.153289 CTCCCGGGATGTTGCAGAG 60.153 63.158 27.07 4.66 0.00 3.35
276 277 0.616395 TACTCCCGGGATGTTGCAGA 60.616 55.000 27.07 6.04 0.00 4.26
277 278 0.251916 TTACTCCCGGGATGTTGCAG 59.748 55.000 27.07 13.33 0.00 4.41
278 279 0.916086 ATTACTCCCGGGATGTTGCA 59.084 50.000 27.07 11.75 0.00 4.08
279 280 2.922740 TATTACTCCCGGGATGTTGC 57.077 50.000 27.07 0.00 0.00 4.17
280 281 3.583086 AGGATATTACTCCCGGGATGTTG 59.417 47.826 27.07 15.45 35.79 3.33
281 282 3.870559 AGGATATTACTCCCGGGATGTT 58.129 45.455 27.07 14.26 35.79 2.71
282 283 3.562108 AGGATATTACTCCCGGGATGT 57.438 47.619 27.07 24.79 35.79 3.06
283 284 4.868268 TCTAGGATATTACTCCCGGGATG 58.132 47.826 27.07 20.29 35.79 3.51
284 285 5.752864 ATCTAGGATATTACTCCCGGGAT 57.247 43.478 27.07 16.80 35.79 3.85
285 286 5.547631 AATCTAGGATATTACTCCCGGGA 57.452 43.478 25.06 25.06 35.79 5.14
286 287 6.622427 AAAATCTAGGATATTACTCCCGGG 57.378 41.667 16.85 16.85 35.79 5.73
332 333 2.017783 GTTTGCTGCGCACATGGTG 61.018 57.895 5.66 0.00 38.71 4.17
333 334 2.336088 GTTTGCTGCGCACATGGT 59.664 55.556 5.66 0.00 38.71 3.55
334 335 2.431260 GGTTTGCTGCGCACATGG 60.431 61.111 5.66 0.00 38.71 3.66
335 336 1.279527 CTTGGTTTGCTGCGCACATG 61.280 55.000 5.66 0.00 38.71 3.21
336 337 1.007038 CTTGGTTTGCTGCGCACAT 60.007 52.632 5.66 0.00 38.71 3.21
337 338 2.412525 CTTGGTTTGCTGCGCACA 59.587 55.556 5.66 7.36 38.71 4.57
338 339 1.945662 CACTTGGTTTGCTGCGCAC 60.946 57.895 5.66 4.25 38.71 5.34
339 340 2.412525 CACTTGGTTTGCTGCGCA 59.587 55.556 10.98 10.98 36.47 6.09
340 341 2.355009 CCACTTGGTTTGCTGCGC 60.355 61.111 0.00 0.00 0.00 6.09
341 342 2.133742 CTCCCACTTGGTTTGCTGCG 62.134 60.000 0.00 0.00 34.77 5.18
342 343 1.662044 CTCCCACTTGGTTTGCTGC 59.338 57.895 0.00 0.00 34.77 5.25
343 344 0.178992 TCCTCCCACTTGGTTTGCTG 60.179 55.000 0.00 0.00 34.77 4.41
344 345 0.555769 TTCCTCCCACTTGGTTTGCT 59.444 50.000 0.00 0.00 34.77 3.91
345 346 1.068588 GTTTCCTCCCACTTGGTTTGC 59.931 52.381 0.00 0.00 34.77 3.68
346 347 2.666317 AGTTTCCTCCCACTTGGTTTG 58.334 47.619 0.00 0.00 34.77 2.93
347 348 3.181433 CCTAGTTTCCTCCCACTTGGTTT 60.181 47.826 0.00 0.00 32.89 3.27
348 349 2.375509 CCTAGTTTCCTCCCACTTGGTT 59.624 50.000 0.00 0.00 32.89 3.67
349 350 1.985895 CCTAGTTTCCTCCCACTTGGT 59.014 52.381 0.00 0.00 32.89 3.67
350 351 2.237392 CTCCTAGTTTCCTCCCACTTGG 59.763 54.545 0.00 0.00 37.29 3.61
351 352 2.355209 GCTCCTAGTTTCCTCCCACTTG 60.355 54.545 0.00 0.00 0.00 3.16
352 353 1.909986 GCTCCTAGTTTCCTCCCACTT 59.090 52.381 0.00 0.00 0.00 3.16
353 354 1.079658 AGCTCCTAGTTTCCTCCCACT 59.920 52.381 0.00 0.00 0.00 4.00
354 355 1.574263 AGCTCCTAGTTTCCTCCCAC 58.426 55.000 0.00 0.00 0.00 4.61
355 356 3.484953 TTAGCTCCTAGTTTCCTCCCA 57.515 47.619 0.00 0.00 0.00 4.37
356 357 4.709250 CAATTAGCTCCTAGTTTCCTCCC 58.291 47.826 0.00 0.00 0.00 4.30
357 358 4.130857 GCAATTAGCTCCTAGTTTCCTCC 58.869 47.826 0.00 0.00 41.15 4.30
371 372 4.970662 TCACTGATGGAAAGCAATTAGC 57.029 40.909 0.00 0.00 46.19 3.09
372 373 6.088824 GTGTTCACTGATGGAAAGCAATTAG 58.911 40.000 0.00 0.00 0.00 1.73
373 374 5.534278 TGTGTTCACTGATGGAAAGCAATTA 59.466 36.000 4.59 0.00 0.00 1.40
374 375 4.341806 TGTGTTCACTGATGGAAAGCAATT 59.658 37.500 4.59 0.00 0.00 2.32
375 376 3.890756 TGTGTTCACTGATGGAAAGCAAT 59.109 39.130 4.59 0.00 0.00 3.56
376 377 3.286353 TGTGTTCACTGATGGAAAGCAA 58.714 40.909 4.59 0.00 0.00 3.91
377 378 2.929641 TGTGTTCACTGATGGAAAGCA 58.070 42.857 4.59 0.00 0.00 3.91
378 379 4.232221 CAATGTGTTCACTGATGGAAAGC 58.768 43.478 4.59 0.00 0.00 3.51
379 380 5.008911 TCACAATGTGTTCACTGATGGAAAG 59.991 40.000 13.55 0.00 34.79 2.62
380 381 4.886489 TCACAATGTGTTCACTGATGGAAA 59.114 37.500 13.55 0.00 34.79 3.13
381 382 4.275689 GTCACAATGTGTTCACTGATGGAA 59.724 41.667 13.55 0.00 34.79 3.53
382 383 3.814842 GTCACAATGTGTTCACTGATGGA 59.185 43.478 13.55 0.00 34.79 3.41
383 384 3.817084 AGTCACAATGTGTTCACTGATGG 59.183 43.478 13.55 0.00 34.79 3.51
384 385 5.428496 AAGTCACAATGTGTTCACTGATG 57.572 39.130 13.55 3.81 34.79 3.07
385 386 6.127647 ACAAAAGTCACAATGTGTTCACTGAT 60.128 34.615 13.55 0.70 34.79 2.90
386 387 5.182950 ACAAAAGTCACAATGTGTTCACTGA 59.817 36.000 13.55 0.00 34.79 3.41
387 388 5.401550 ACAAAAGTCACAATGTGTTCACTG 58.598 37.500 13.55 9.11 34.79 3.66
388 389 5.643379 ACAAAAGTCACAATGTGTTCACT 57.357 34.783 13.55 6.82 34.79 3.41
389 390 6.092748 AGAACAAAAGTCACAATGTGTTCAC 58.907 36.000 13.55 4.46 44.56 3.18
390 391 6.072230 TGAGAACAAAAGTCACAATGTGTTCA 60.072 34.615 13.55 5.40 44.56 3.18
391 392 6.251376 GTGAGAACAAAAGTCACAATGTGTTC 59.749 38.462 13.55 7.76 43.20 3.18
392 393 6.092748 GTGAGAACAAAAGTCACAATGTGTT 58.907 36.000 13.55 0.00 40.34 3.32
393 394 5.393027 GGTGAGAACAAAAGTCACAATGTGT 60.393 40.000 13.55 0.00 42.04 3.72
394 395 5.036737 GGTGAGAACAAAAGTCACAATGTG 58.963 41.667 7.12 7.12 42.04 3.21
395 396 4.949856 AGGTGAGAACAAAAGTCACAATGT 59.050 37.500 4.26 0.00 42.04 2.71
396 397 5.297776 AGAGGTGAGAACAAAAGTCACAATG 59.702 40.000 4.26 0.00 42.04 2.82
397 398 5.440610 AGAGGTGAGAACAAAAGTCACAAT 58.559 37.500 4.26 0.00 42.04 2.71
398 399 4.843728 AGAGGTGAGAACAAAAGTCACAA 58.156 39.130 4.26 0.00 42.04 3.33
399 400 4.487714 AGAGGTGAGAACAAAAGTCACA 57.512 40.909 4.26 0.00 42.04 3.58
400 401 7.497925 AATTAGAGGTGAGAACAAAAGTCAC 57.502 36.000 0.00 0.00 39.96 3.67
401 402 9.621629 TTTAATTAGAGGTGAGAACAAAAGTCA 57.378 29.630 0.00 0.00 0.00 3.41
402 403 9.880064 GTTTAATTAGAGGTGAGAACAAAAGTC 57.120 33.333 0.00 0.00 0.00 3.01
403 404 9.628500 AGTTTAATTAGAGGTGAGAACAAAAGT 57.372 29.630 0.00 0.00 0.00 2.66
408 409 9.886132 GGATTAGTTTAATTAGAGGTGAGAACA 57.114 33.333 0.00 0.00 0.00 3.18
414 415 9.788960 GCAAAAGGATTAGTTTAATTAGAGGTG 57.211 33.333 0.00 0.00 0.00 4.00
415 416 9.528489 TGCAAAAGGATTAGTTTAATTAGAGGT 57.472 29.630 0.00 0.00 0.00 3.85
424 425 8.956426 CCTTGTAGATGCAAAAGGATTAGTTTA 58.044 33.333 8.88 0.00 41.49 2.01
425 426 7.669722 TCCTTGTAGATGCAAAAGGATTAGTTT 59.330 33.333 11.80 0.00 42.51 2.66
426 427 7.175104 TCCTTGTAGATGCAAAAGGATTAGTT 58.825 34.615 11.80 0.00 42.51 2.24
427 428 6.721318 TCCTTGTAGATGCAAAAGGATTAGT 58.279 36.000 11.80 0.00 42.51 2.24
428 429 7.630242 TTCCTTGTAGATGCAAAAGGATTAG 57.370 36.000 14.90 0.00 45.73 1.73
429 430 6.095440 GCTTCCTTGTAGATGCAAAAGGATTA 59.905 38.462 14.90 5.12 45.73 1.75
430 431 5.105595 GCTTCCTTGTAGATGCAAAAGGATT 60.106 40.000 14.90 0.00 45.73 3.01
431 432 4.400567 GCTTCCTTGTAGATGCAAAAGGAT 59.599 41.667 14.90 0.00 45.73 3.24
432 433 3.758554 GCTTCCTTGTAGATGCAAAAGGA 59.241 43.478 11.80 11.80 44.99 3.36
433 434 3.507233 TGCTTCCTTGTAGATGCAAAAGG 59.493 43.478 0.00 0.00 42.11 3.11
434 435 4.456911 TCTGCTTCCTTGTAGATGCAAAAG 59.543 41.667 0.00 0.00 43.73 2.27
435 436 4.397420 TCTGCTTCCTTGTAGATGCAAAA 58.603 39.130 0.00 0.00 43.73 2.44
436 437 4.019792 TCTGCTTCCTTGTAGATGCAAA 57.980 40.909 0.00 0.00 43.73 3.68
437 438 3.701205 TCTGCTTCCTTGTAGATGCAA 57.299 42.857 0.00 0.00 43.73 4.08
438 439 3.261643 TCTTCTGCTTCCTTGTAGATGCA 59.738 43.478 0.00 0.00 42.63 3.96
439 440 3.866651 TCTTCTGCTTCCTTGTAGATGC 58.133 45.455 0.00 0.00 37.42 3.91
440 441 5.336150 TCTCTTCTGCTTCCTTGTAGATG 57.664 43.478 0.00 0.00 0.00 2.90
441 442 5.247110 TGTTCTCTTCTGCTTCCTTGTAGAT 59.753 40.000 0.00 0.00 0.00 1.98
442 443 4.588951 TGTTCTCTTCTGCTTCCTTGTAGA 59.411 41.667 0.00 0.00 0.00 2.59
443 444 4.887748 TGTTCTCTTCTGCTTCCTTGTAG 58.112 43.478 0.00 0.00 0.00 2.74
444 445 4.955811 TGTTCTCTTCTGCTTCCTTGTA 57.044 40.909 0.00 0.00 0.00 2.41
445 446 3.845781 TGTTCTCTTCTGCTTCCTTGT 57.154 42.857 0.00 0.00 0.00 3.16
446 447 5.009410 ACAAATGTTCTCTTCTGCTTCCTTG 59.991 40.000 0.00 0.00 0.00 3.61
447 448 5.136105 ACAAATGTTCTCTTCTGCTTCCTT 58.864 37.500 0.00 0.00 0.00 3.36
448 449 4.723309 ACAAATGTTCTCTTCTGCTTCCT 58.277 39.130 0.00 0.00 0.00 3.36
449 450 6.150140 ACATACAAATGTTCTCTTCTGCTTCC 59.850 38.462 0.00 0.00 44.07 3.46
450 451 7.138692 ACATACAAATGTTCTCTTCTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
467 468 6.867816 CGGTGGTAGTAAGTTGTAACATACAA 59.132 38.462 11.31 0.00 45.66 2.41
468 469 6.389091 CGGTGGTAGTAAGTTGTAACATACA 58.611 40.000 11.31 0.00 36.00 2.29
480 481 4.383173 ACAAAAAGACCGGTGGTAGTAAG 58.617 43.478 14.63 0.00 35.25 2.34
492 493 7.527457 GTGGTATTGACAGATACAAAAAGACC 58.473 38.462 8.86 0.00 34.82 3.85
502 503 3.621268 GCTTTGCGTGGTATTGACAGATA 59.379 43.478 0.00 0.00 0.00 1.98
507 508 2.697431 TTGCTTTGCGTGGTATTGAC 57.303 45.000 0.00 0.00 0.00 3.18
510 511 4.037446 TCTTCTTTTGCTTTGCGTGGTATT 59.963 37.500 0.00 0.00 0.00 1.89
511 512 3.568007 TCTTCTTTTGCTTTGCGTGGTAT 59.432 39.130 0.00 0.00 0.00 2.73
518 519 6.833342 TCTTTGATTCTTCTTTTGCTTTGC 57.167 33.333 0.00 0.00 0.00 3.68
546 547 5.403466 CACTTTGTCAGCCTTTTCTTTATGC 59.597 40.000 0.00 0.00 0.00 3.14
547 548 5.403466 GCACTTTGTCAGCCTTTTCTTTATG 59.597 40.000 0.00 0.00 0.00 1.90
549 550 4.400884 TGCACTTTGTCAGCCTTTTCTTTA 59.599 37.500 0.00 0.00 0.00 1.85
558 559 1.503542 CCGATGCACTTTGTCAGCC 59.496 57.895 0.00 0.00 0.00 4.85
589 590 2.440980 GGCCCATGCTGGTTCCTC 60.441 66.667 0.00 0.00 35.17 3.71
617 618 4.762956 ACATTGCTTTGCTTTCTCTCTC 57.237 40.909 0.00 0.00 0.00 3.20
618 619 4.153117 CGTACATTGCTTTGCTTTCTCTCT 59.847 41.667 0.00 0.00 0.00 3.10
658 661 2.693074 TGTGTGTTCTGTGTAGCTGAGA 59.307 45.455 0.00 0.00 0.00 3.27
659 662 2.797156 GTGTGTGTTCTGTGTAGCTGAG 59.203 50.000 0.00 0.00 0.00 3.35
660 663 2.430694 AGTGTGTGTTCTGTGTAGCTGA 59.569 45.455 0.00 0.00 0.00 4.26
661 664 2.797156 GAGTGTGTGTTCTGTGTAGCTG 59.203 50.000 0.00 0.00 0.00 4.24
662 665 2.695666 AGAGTGTGTGTTCTGTGTAGCT 59.304 45.455 0.00 0.00 0.00 3.32
663 666 3.099267 AGAGTGTGTGTTCTGTGTAGC 57.901 47.619 0.00 0.00 0.00 3.58
687 1233 7.606456 ACACAATCCAATAATATATCGTGGGTC 59.394 37.037 8.62 0.00 0.00 4.46
705 1251 1.870055 CTGGCAGGTGCACACAATCC 61.870 60.000 20.43 11.94 44.36 3.01
747 1293 1.002134 ATTGCCTGTGTTCTCCCCG 60.002 57.895 0.00 0.00 0.00 5.73
753 1299 3.855689 ATAAGTGCATTGCCTGTGTTC 57.144 42.857 6.12 0.00 0.00 3.18
786 1332 2.293399 AGTTTGTGGATCCTTGTTTCGC 59.707 45.455 14.23 0.00 0.00 4.70
793 1339 7.607991 CACTAAATGACTAGTTTGTGGATCCTT 59.392 37.037 14.23 0.00 35.20 3.36
797 1343 6.476378 AGCACTAAATGACTAGTTTGTGGAT 58.524 36.000 0.00 0.00 37.82 3.41
931 1477 0.317269 CGGGCGATGAATGATGCAAC 60.317 55.000 0.00 0.00 0.00 4.17
947 1493 1.504359 TTGACTTGACTAAACGCGGG 58.496 50.000 12.47 0.00 0.00 6.13
1142 1708 2.202756 CTCCTACACCTTCGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
1179 1746 2.095567 CGATTTCAGGAGTTTGGCTGTG 60.096 50.000 0.00 0.00 0.00 3.66
1212 1779 4.553323 CAAAATGCTTTCTTCTGTCAGGG 58.447 43.478 0.00 0.00 0.00 4.45
1220 1787 7.964559 GGATAATTTTGCCAAAATGCTTTCTTC 59.035 33.333 15.69 5.99 40.05 2.87
1561 2140 6.511416 TGTCTTTTCTCTCTGAGAGTTGAAG 58.489 40.000 28.60 26.15 42.83 3.02
1596 2175 9.559958 CGAATTACTTTGAAATATGCAGAACTT 57.440 29.630 0.00 0.00 0.00 2.66
1856 2445 3.756963 AGGTTTTCCGAGTATTGGCTTTC 59.243 43.478 0.00 0.00 46.35 2.62
1858 2447 3.434940 AGGTTTTCCGAGTATTGGCTT 57.565 42.857 0.00 0.00 46.35 4.35
1864 2453 5.485209 AGACTGAAAGGTTTTCCGAGTAT 57.515 39.130 0.00 0.00 46.35 2.12
1868 2457 3.875134 GTCAAGACTGAAAGGTTTTCCGA 59.125 43.478 0.00 0.00 39.30 4.55
1910 2499 5.589855 CCATCACATATCCAGTAGTTGCAAA 59.410 40.000 0.00 0.00 0.00 3.68
1991 2580 5.097742 AGATGGATAACACAACATCCGAA 57.902 39.130 0.00 0.00 43.18 4.30
2032 2621 4.093703 TCTTTGTTGATCGAAACAACGTGT 59.906 37.500 23.54 0.00 46.77 4.49
2072 2667 4.037927 CCCTAGTTGGTTGGAGGAGATTA 58.962 47.826 0.00 0.00 0.00 1.75
2181 2779 4.220602 AGGTTGCTGGCTAATACAAAAAGG 59.779 41.667 0.00 0.00 0.00 3.11
2188 2786 2.289565 GTGGAGGTTGCTGGCTAATAC 58.710 52.381 0.00 0.00 0.00 1.89
2285 2890 5.981088 TGTATTTGTGCAATGGTGAAGAT 57.019 34.783 0.00 0.00 0.00 2.40
2286 2891 5.278907 CCTTGTATTTGTGCAATGGTGAAGA 60.279 40.000 0.00 0.00 0.00 2.87
2290 2895 3.257873 TCCCTTGTATTTGTGCAATGGTG 59.742 43.478 0.00 0.00 33.83 4.17
2304 2909 2.196595 CCACCTTGATCCTCCCTTGTA 58.803 52.381 0.00 0.00 0.00 2.41
2386 3012 9.636789 ATTGGTCATCAAATCTATCATCTTTGA 57.363 29.630 0.00 0.00 41.57 2.69
2522 3152 2.303890 ACTGAAGAGCATGTGTCCATCA 59.696 45.455 0.00 0.00 0.00 3.07
2541 3171 8.066867 AGGAGCTCCATATTCATCATATCTACT 58.933 37.037 33.90 3.63 38.89 2.57
2614 3244 0.606604 ATCTTCAAGTACCGTGCCGT 59.393 50.000 0.00 0.00 0.00 5.68
2667 3297 0.179054 GGGCTCCTCCGAATACAACC 60.179 60.000 0.00 0.00 34.94 3.77
3109 3771 4.482990 ACAGACCAAATGAACCTTCCATT 58.517 39.130 0.00 0.00 35.92 3.16
3192 3866 1.896220 TGGTGATGTTGACTTGGCTC 58.104 50.000 0.00 0.00 0.00 4.70
3255 3932 1.201424 AAGGTAAGAAGGGCCCTACG 58.799 55.000 28.96 0.00 0.00 3.51
3279 3956 8.103305 ACAGTGTCCTTGTTAATGACAATATCT 58.897 33.333 0.00 0.00 46.58 1.98
3300 3977 2.874701 CAAGGAAGAAGGTGTGACAGTG 59.125 50.000 0.00 0.00 0.00 3.66
3311 3988 1.545651 GGTCCCACACCAAGGAAGAAG 60.546 57.143 0.00 0.00 45.98 2.85
3312 3989 0.476771 GGTCCCACACCAAGGAAGAA 59.523 55.000 0.00 0.00 45.98 2.52
3504 4187 3.368248 ACACCATTCTAAATGCAGCCAT 58.632 40.909 0.00 0.00 0.00 4.40
3661 4345 5.251601 AGGTATCGAAAGCTGTAGAAGTC 57.748 43.478 0.00 0.00 0.00 3.01
3677 4379 6.197842 GTGCAAGTATACGTGTTGTAGGTATC 59.802 42.308 18.20 0.96 40.04 2.24
3679 4381 5.048154 TGTGCAAGTATACGTGTTGTAGGTA 60.048 40.000 18.20 0.00 36.25 3.08
3691 4393 5.109903 CCTAGGACAGTTGTGCAAGTATAC 58.890 45.833 1.05 0.00 38.96 1.47
3740 4445 3.421844 GTCTCTAAGTTTGGCATTGGGT 58.578 45.455 0.00 0.00 0.00 4.51
3742 4447 3.420893 TGGTCTCTAAGTTTGGCATTGG 58.579 45.455 0.00 0.00 0.00 3.16
3745 4450 4.922206 TGAATGGTCTCTAAGTTTGGCAT 58.078 39.130 0.00 0.00 0.00 4.40
3756 4461 5.048364 GCAGTATACGATCTGAATGGTCTCT 60.048 44.000 0.00 0.00 34.02 3.10
3773 4478 6.186957 ACATGTTGGAGATTTTGGCAGTATA 58.813 36.000 0.00 0.00 0.00 1.47
3782 4487 5.366477 AGTGGGAAAACATGTTGGAGATTTT 59.634 36.000 12.82 0.00 0.00 1.82
3783 4488 4.901250 AGTGGGAAAACATGTTGGAGATTT 59.099 37.500 12.82 0.76 0.00 2.17
3809 4514 1.672030 TGAGCGTGCTCATTGGTGG 60.672 57.895 19.99 0.00 46.80 4.61
3823 4531 3.181467 ACACCAGATGCTATCTCTTGAGC 60.181 47.826 0.00 0.00 37.58 4.26
3852 4566 3.871485 CCTGATGTGCTTTAGCTTCTCT 58.129 45.455 0.00 0.00 42.66 3.10
3976 4693 3.770424 GCGCGACACGGTTGGTAC 61.770 66.667 12.10 0.00 43.93 3.34
4344 5104 1.877443 CCAAACACCGACAAACTAGGG 59.123 52.381 0.00 0.00 0.00 3.53
4384 5146 2.515290 CATGCCGCAGATGGAGCA 60.515 61.111 0.00 0.00 40.00 4.26
4493 5255 3.774216 TCCAAACCAATCCAATCCAATCC 59.226 43.478 0.00 0.00 0.00 3.01
4494 5256 5.619132 ATCCAAACCAATCCAATCCAATC 57.381 39.130 0.00 0.00 0.00 2.67
4495 5257 5.339365 CCAATCCAAACCAATCCAATCCAAT 60.339 40.000 0.00 0.00 0.00 3.16
4496 5258 4.019501 CCAATCCAAACCAATCCAATCCAA 60.020 41.667 0.00 0.00 0.00 3.53
4497 5259 3.518705 CCAATCCAAACCAATCCAATCCA 59.481 43.478 0.00 0.00 0.00 3.41
4540 5302 1.203287 GAGGAACCAAGCAAGCAATCC 59.797 52.381 0.00 0.00 0.00 3.01
4547 5309 2.553028 CCAAGCTAGAGGAACCAAGCAA 60.553 50.000 12.71 0.00 37.44 3.91
4648 5467 3.575687 AGAAATCCTGCTGTTTTTGAGGG 59.424 43.478 0.00 0.00 0.00 4.30
4792 5611 5.105392 TGTTGCACACCATTCTTTCTTTTCT 60.105 36.000 0.00 0.00 0.00 2.52
4793 5612 5.108517 TGTTGCACACCATTCTTTCTTTTC 58.891 37.500 0.00 0.00 0.00 2.29
4794 5613 5.083533 TGTTGCACACCATTCTTTCTTTT 57.916 34.783 0.00 0.00 0.00 2.27
4795 5614 4.734398 TGTTGCACACCATTCTTTCTTT 57.266 36.364 0.00 0.00 0.00 2.52
4796 5615 4.734398 TTGTTGCACACCATTCTTTCTT 57.266 36.364 0.00 0.00 0.00 2.52
4797 5616 4.734398 TTTGTTGCACACCATTCTTTCT 57.266 36.364 0.00 0.00 0.00 2.52
4798 5617 4.033932 GGTTTTGTTGCACACCATTCTTTC 59.966 41.667 0.00 0.00 0.00 2.62
4799 5618 3.938334 GGTTTTGTTGCACACCATTCTTT 59.062 39.130 0.00 0.00 0.00 2.52
4800 5619 3.055530 TGGTTTTGTTGCACACCATTCTT 60.056 39.130 0.00 0.00 0.00 2.52
4801 5620 2.499289 TGGTTTTGTTGCACACCATTCT 59.501 40.909 0.00 0.00 0.00 2.40
4806 5625 1.203523 TCAGTGGTTTTGTTGCACACC 59.796 47.619 0.00 0.00 32.71 4.16
4834 5653 4.046286 TCCAAGTTGGGTAGATGCATTT 57.954 40.909 21.85 0.00 38.32 2.32
4880 5699 0.396060 AAGCTGCTAGCCCATAGAGC 59.604 55.000 13.29 13.20 43.77 4.09
5035 5854 7.373617 TCACCAGTAATCCATATGTGTACAT 57.626 36.000 0.00 2.75 40.22 2.29
5037 5856 7.551262 TGTTTCACCAGTAATCCATATGTGTAC 59.449 37.037 1.24 1.31 0.00 2.90
5038 5857 7.625469 TGTTTCACCAGTAATCCATATGTGTA 58.375 34.615 1.24 0.00 0.00 2.90
5042 5861 9.874205 ATTTTTGTTTCACCAGTAATCCATATG 57.126 29.630 0.00 0.00 0.00 1.78
5044 5863 8.310382 CCATTTTTGTTTCACCAGTAATCCATA 58.690 33.333 0.00 0.00 0.00 2.74
5045 5864 7.160726 CCATTTTTGTTTCACCAGTAATCCAT 58.839 34.615 0.00 0.00 0.00 3.41
5046 5865 6.098982 ACCATTTTTGTTTCACCAGTAATCCA 59.901 34.615 0.00 0.00 0.00 3.41
5047 5866 6.423604 CACCATTTTTGTTTCACCAGTAATCC 59.576 38.462 0.00 0.00 0.00 3.01
5054 5873 4.559862 AACCACCATTTTTGTTTCACCA 57.440 36.364 0.00 0.00 0.00 4.17
5059 5878 7.831690 AGGTTCATAAAACCACCATTTTTGTTT 59.168 29.630 9.45 0.00 42.69 2.83
5086 5905 4.124238 AGTAACTCGTAGTTGCTGCAAAA 58.876 39.130 17.80 5.59 46.82 2.44
5096 5915 6.875726 GGTTATTTTTCCCAGTAACTCGTAGT 59.124 38.462 0.00 0.00 0.00 2.73
5100 5919 4.436451 GCGGTTATTTTTCCCAGTAACTCG 60.436 45.833 0.00 0.00 0.00 4.18
5103 5922 4.023021 TGTGCGGTTATTTTTCCCAGTAAC 60.023 41.667 0.00 0.00 0.00 2.50
5107 5926 2.817258 TCTGTGCGGTTATTTTTCCCAG 59.183 45.455 0.00 0.00 0.00 4.45
5108 5927 2.865079 TCTGTGCGGTTATTTTTCCCA 58.135 42.857 0.00 0.00 0.00 4.37
5138 5957 5.224821 TGCTCCATGAATGAGAGGATAAG 57.775 43.478 0.00 0.00 0.00 1.73
5143 5962 2.995283 TGTTGCTCCATGAATGAGAGG 58.005 47.619 0.00 0.00 0.00 3.69
5179 6001 6.483640 ACTTCTCACTGTTTTGTTCATACTCC 59.516 38.462 0.00 0.00 0.00 3.85
5182 6004 7.432252 CCAAACTTCTCACTGTTTTGTTCATAC 59.568 37.037 0.00 0.00 34.60 2.39
5223 6045 6.044512 ACTAGTTTTGTTACAACTGCTTCG 57.955 37.500 0.00 0.00 35.95 3.79
5243 6065 5.704888 CAATACCAATGTTTCCGCAAACTA 58.295 37.500 3.22 0.00 42.29 2.24
5260 6082 4.455606 AGCTAGATTGACAAGGCAATACC 58.544 43.478 0.22 0.00 38.53 2.73
5262 6084 5.994250 AGAAGCTAGATTGACAAGGCAATA 58.006 37.500 0.00 0.00 38.53 1.90
5266 6088 5.017294 AGTAGAAGCTAGATTGACAAGGC 57.983 43.478 0.00 0.00 0.00 4.35
5310 6132 9.950680 GTATTGTTCACCGAATTTCATTATCAT 57.049 29.630 0.00 0.00 0.00 2.45
5324 6146 3.374058 GGTCTTGATGGTATTGTTCACCG 59.626 47.826 0.00 0.00 39.04 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.