Multiple sequence alignment - TraesCS5A01G022300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G022300 chr5A 100.000 2786 0 0 1 2786 18390821 18388036 0.000000e+00 5145.0
1 TraesCS5A01G022300 chr5A 87.264 212 20 4 2084 2292 18387696 18387903 4.640000e-58 235.0
2 TraesCS5A01G022300 chr5A 78.840 293 49 11 2085 2369 545054493 545054780 4.740000e-43 185.0
3 TraesCS5A01G022300 chr5A 82.738 168 23 4 2084 2248 649807400 649807564 8.040000e-31 145.0
4 TraesCS5A01G022300 chr5D 93.702 905 46 6 1884 2786 26541804 26542699 0.000000e+00 1345.0
5 TraesCS5A01G022300 chr5D 89.571 652 36 19 812 1435 26531743 26532390 0.000000e+00 798.0
6 TraesCS5A01G022300 chr5D 82.496 697 89 10 2077 2768 446673204 446673872 5.170000e-162 580.0
7 TraesCS5A01G022300 chr5D 85.570 395 46 6 3 386 26531165 26531559 1.200000e-108 403.0
8 TraesCS5A01G022300 chr5D 84.171 398 47 12 1502 1890 26540956 26541346 3.390000e-99 372.0
9 TraesCS5A01G022300 chr5D 87.838 222 19 5 2084 2301 26543041 26542824 1.280000e-63 254.0
10 TraesCS5A01G022300 chr5D 91.011 89 4 1 435 519 26531558 26531646 1.750000e-22 117.0
11 TraesCS5A01G022300 chr5D 81.333 150 19 7 2095 2241 429286047 429286190 2.270000e-21 113.0
12 TraesCS5A01G022300 chr7D 83.081 857 105 22 967 1798 533757826 533758667 0.000000e+00 743.0
13 TraesCS5A01G022300 chr7B 82.614 857 112 20 967 1798 573922898 573923742 0.000000e+00 723.0
14 TraesCS5A01G022300 chr7B 84.333 600 91 2 2176 2773 732467813 732467215 4.000000e-163 584.0
15 TraesCS5A01G022300 chr7A 82.686 849 108 23 967 1789 613176706 613177541 0.000000e+00 717.0
16 TraesCS5A01G022300 chr6D 84.670 698 84 18 2084 2775 263040887 263040207 0.000000e+00 675.0
17 TraesCS5A01G022300 chr3A 83.523 704 99 10 2084 2775 588726428 588727126 2.340000e-180 641.0
18 TraesCS5A01G022300 chr2D 76.556 482 92 14 1047 1516 94328855 94328383 7.710000e-61 244.0
19 TraesCS5A01G022300 chr2B 76.299 481 95 11 1047 1516 146451971 146451499 3.590000e-59 239.0
20 TraesCS5A01G022300 chr2B 100.000 28 0 0 414 441 25022429 25022456 5.000000e-03 52.8
21 TraesCS5A01G022300 chr5B 98.413 63 0 1 1797 1859 18712377 18712438 2.930000e-20 110.0
22 TraesCS5A01G022300 chr5B 93.750 48 1 2 372 419 425108300 425108345 1.380000e-08 71.3
23 TraesCS5A01G022300 chr5B 97.561 41 0 1 380 420 307347902 307347941 4.980000e-08 69.4
24 TraesCS5A01G022300 chr6B 87.143 70 3 5 371 436 393583219 393583152 1.070000e-09 75.0
25 TraesCS5A01G022300 chr3D 95.455 44 0 2 377 420 208025616 208025657 4.980000e-08 69.4
26 TraesCS5A01G022300 chr3D 100.000 28 0 0 414 441 327739470 327739497 5.000000e-03 52.8
27 TraesCS5A01G022300 chr3B 93.617 47 2 1 374 420 511072952 511072997 4.980000e-08 69.4
28 TraesCS5A01G022300 chr3B 97.500 40 0 1 381 420 566998759 566998721 1.790000e-07 67.6
29 TraesCS5A01G022300 chr6A 93.478 46 2 1 377 421 492275926 492275971 1.790000e-07 67.6
30 TraesCS5A01G022300 chr1B 91.837 49 3 1 372 420 433102715 433102762 1.790000e-07 67.6
31 TraesCS5A01G022300 chr4A 82.432 74 8 5 385 457 250712715 250712646 3.000000e-05 60.2
32 TraesCS5A01G022300 chrUn 100.000 28 0 0 414 441 36501146 36501173 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G022300 chr5A 18388036 18390821 2785 True 5145.000000 5145 100.000000 1 2786 1 chr5A.!!$R1 2785
1 TraesCS5A01G022300 chr5D 26540956 26542699 1743 False 858.500000 1345 88.936500 1502 2786 2 chr5D.!!$F4 1284
2 TraesCS5A01G022300 chr5D 446673204 446673872 668 False 580.000000 580 82.496000 2077 2768 1 chr5D.!!$F2 691
3 TraesCS5A01G022300 chr5D 26531165 26532390 1225 False 439.333333 798 88.717333 3 1435 3 chr5D.!!$F3 1432
4 TraesCS5A01G022300 chr7D 533757826 533758667 841 False 743.000000 743 83.081000 967 1798 1 chr7D.!!$F1 831
5 TraesCS5A01G022300 chr7B 573922898 573923742 844 False 723.000000 723 82.614000 967 1798 1 chr7B.!!$F1 831
6 TraesCS5A01G022300 chr7B 732467215 732467813 598 True 584.000000 584 84.333000 2176 2773 1 chr7B.!!$R1 597
7 TraesCS5A01G022300 chr7A 613176706 613177541 835 False 717.000000 717 82.686000 967 1789 1 chr7A.!!$F1 822
8 TraesCS5A01G022300 chr6D 263040207 263040887 680 True 675.000000 675 84.670000 2084 2775 1 chr6D.!!$R1 691
9 TraesCS5A01G022300 chr3A 588726428 588727126 698 False 641.000000 641 83.523000 2084 2775 1 chr3A.!!$F1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 185 0.032815 ACAATTTTTGGGCGTTCCGG 59.967 50.0 0.0 0.0 38.76 5.14 F
672 688 0.036952 AGGACATTGGTGCAGAGACG 60.037 55.0 0.0 0.0 37.91 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 1825 0.321122 CCACGCTTCTTGCTCTTCCT 60.321 55.0 0.00 0.0 40.11 3.36 R
2661 3281 0.107508 ACGCTGCAGCAATAGATGGT 60.108 50.0 36.03 20.9 42.21 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.396951 CACCCCTCACTTTTGACGT 57.603 52.632 0.00 0.00 0.00 4.34
27 28 1.154908 CTTTTGACGTTCGTCGCCG 60.155 57.895 18.11 3.12 44.19 6.46
29 30 4.927444 TTGACGTTCGTCGCCGCA 62.927 61.111 18.11 0.95 44.19 5.69
45 46 4.129737 CACCGCCATCGACGTCCT 62.130 66.667 10.58 0.00 38.10 3.85
46 47 3.379445 ACCGCCATCGACGTCCTT 61.379 61.111 10.58 0.00 38.10 3.36
48 49 2.126071 CGCCATCGACGTCCTTGT 60.126 61.111 10.58 0.00 38.10 3.16
52 53 0.037697 CCATCGACGTCCTTGTTCCA 60.038 55.000 10.58 0.00 0.00 3.53
54 55 0.966920 ATCGACGTCCTTGTTCCACT 59.033 50.000 10.58 0.00 0.00 4.00
56 57 1.137513 CGACGTCCTTGTTCCACTTC 58.862 55.000 10.58 0.00 0.00 3.01
76 78 4.154347 CGCCTCCCTGCTCCTGTC 62.154 72.222 0.00 0.00 0.00 3.51
102 104 3.064324 GTCGGCAAGCTGGGCATT 61.064 61.111 16.00 0.00 0.00 3.56
103 105 3.063704 TCGGCAAGCTGGGCATTG 61.064 61.111 16.00 0.00 0.00 2.82
151 154 6.054295 GCATTCAGATTAGTTGATCAGACCT 58.946 40.000 0.00 0.00 0.00 3.85
155 158 2.561733 TTAGTTGATCAGACCTCGCG 57.438 50.000 0.00 0.00 0.00 5.87
172 175 1.189884 CGCGCAACTCCACAATTTTTG 59.810 47.619 8.75 0.00 0.00 2.44
178 181 1.760029 ACTCCACAATTTTTGGGCGTT 59.240 42.857 1.85 0.00 34.56 4.84
182 185 0.032815 ACAATTTTTGGGCGTTCCGG 59.967 50.000 0.00 0.00 38.76 5.14
183 186 0.669012 CAATTTTTGGGCGTTCCGGG 60.669 55.000 0.00 0.00 38.76 5.73
191 194 2.643232 GGCGTTCCGGGACAGTACT 61.643 63.158 14.76 0.00 0.00 2.73
194 197 0.316204 CGTTCCGGGACAGTACTGTT 59.684 55.000 28.49 13.24 45.05 3.16
205 208 5.010213 GGGACAGTACTGTTCATCTAGATCC 59.990 48.000 30.87 21.13 45.05 3.36
208 211 3.570550 AGTACTGTTCATCTAGATCCGCC 59.429 47.826 1.03 0.00 0.00 6.13
239 243 2.895372 GTGGCGGCGGTAGATTGG 60.895 66.667 9.78 0.00 0.00 3.16
256 260 1.127567 TGGGAGTTGGGTCACAGGAG 61.128 60.000 0.00 0.00 0.00 3.69
259 263 1.143073 GGAGTTGGGTCACAGGAGTTT 59.857 52.381 0.00 0.00 0.00 2.66
265 269 1.543429 GGGTCACAGGAGTTTGGTCAG 60.543 57.143 0.00 0.00 0.00 3.51
280 284 8.691661 AGTTTGGTCAGTTGACTTGTATTTAT 57.308 30.769 11.67 0.00 44.20 1.40
284 288 8.141298 TGGTCAGTTGACTTGTATTTATCCTA 57.859 34.615 11.67 0.00 44.20 2.94
304 308 6.143915 TCCTAGTAGATTGATAAGTTGCCCT 58.856 40.000 0.00 0.00 0.00 5.19
317 321 8.278639 TGATAAGTTGCCCTAAAATCTCCATAA 58.721 33.333 0.00 0.00 0.00 1.90
322 330 4.065789 GCCCTAAAATCTCCATAAGTCCG 58.934 47.826 0.00 0.00 0.00 4.79
335 343 8.148351 TCTCCATAAGTCCGATTTTAACCTATG 58.852 37.037 0.00 0.00 0.00 2.23
337 345 7.713507 TCCATAAGTCCGATTTTAACCTATGTG 59.286 37.037 0.00 0.00 0.00 3.21
338 346 5.813080 AAGTCCGATTTTAACCTATGTGC 57.187 39.130 0.00 0.00 0.00 4.57
339 347 4.196971 AGTCCGATTTTAACCTATGTGCC 58.803 43.478 0.00 0.00 0.00 5.01
346 358 2.799126 TAACCTATGTGCCCACCAAG 57.201 50.000 0.00 0.00 0.00 3.61
352 364 1.909700 ATGTGCCCACCAAGTTACTG 58.090 50.000 0.00 0.00 0.00 2.74
369 381 6.628185 AGTTACTGGTTACTGACTTATTCCG 58.372 40.000 0.00 0.00 0.00 4.30
373 385 3.998341 TGGTTACTGACTTATTCCGTTGC 59.002 43.478 0.00 0.00 0.00 4.17
384 396 8.733458 TGACTTATTCCGTTGCGTATACTATAT 58.267 33.333 0.56 0.00 0.00 0.86
386 398 9.994432 ACTTATTCCGTTGCGTATACTATATAC 57.006 33.333 0.56 0.00 0.00 1.47
389 401 6.668541 TCCGTTGCGTATACTATATACTCC 57.331 41.667 0.56 0.00 0.00 3.85
390 402 5.586243 TCCGTTGCGTATACTATATACTCCC 59.414 44.000 0.56 0.00 0.00 4.30
391 403 5.587844 CCGTTGCGTATACTATATACTCCCT 59.412 44.000 0.56 0.00 0.00 4.20
392 404 6.238320 CCGTTGCGTATACTATATACTCCCTC 60.238 46.154 0.56 0.00 0.00 4.30
393 405 6.238320 CGTTGCGTATACTATATACTCCCTCC 60.238 46.154 0.56 0.00 0.00 4.30
394 406 6.317663 TGCGTATACTATATACTCCCTCCA 57.682 41.667 0.56 0.00 0.00 3.86
395 407 6.907961 TGCGTATACTATATACTCCCTCCAT 58.092 40.000 0.56 0.00 0.00 3.41
396 408 6.996879 TGCGTATACTATATACTCCCTCCATC 59.003 42.308 0.56 0.00 0.00 3.51
397 409 6.430616 GCGTATACTATATACTCCCTCCATCC 59.569 46.154 0.56 0.00 0.00 3.51
398 410 6.941436 CGTATACTATATACTCCCTCCATCCC 59.059 46.154 0.56 0.00 0.00 3.85
399 411 6.945322 ATACTATATACTCCCTCCATCCCA 57.055 41.667 0.00 0.00 0.00 4.37
400 412 5.633473 ACTATATACTCCCTCCATCCCAA 57.367 43.478 0.00 0.00 0.00 4.12
401 413 5.989717 ACTATATACTCCCTCCATCCCAAA 58.010 41.667 0.00 0.00 0.00 3.28
402 414 6.399013 ACTATATACTCCCTCCATCCCAAAA 58.601 40.000 0.00 0.00 0.00 2.44
403 415 7.031917 ACTATATACTCCCTCCATCCCAAAAT 58.968 38.462 0.00 0.00 0.00 1.82
404 416 6.803587 ATATACTCCCTCCATCCCAAAATT 57.196 37.500 0.00 0.00 0.00 1.82
405 417 3.388552 ACTCCCTCCATCCCAAAATTC 57.611 47.619 0.00 0.00 0.00 2.17
406 418 2.929043 ACTCCCTCCATCCCAAAATTCT 59.071 45.455 0.00 0.00 0.00 2.40
407 419 3.337909 ACTCCCTCCATCCCAAAATTCTT 59.662 43.478 0.00 0.00 0.00 2.52
408 420 3.703052 CTCCCTCCATCCCAAAATTCTTG 59.297 47.826 0.00 0.00 0.00 3.02
409 421 3.077391 TCCCTCCATCCCAAAATTCTTGT 59.923 43.478 0.00 0.00 0.00 3.16
410 422 3.448660 CCCTCCATCCCAAAATTCTTGTC 59.551 47.826 0.00 0.00 0.00 3.18
411 423 4.347607 CCTCCATCCCAAAATTCTTGTCT 58.652 43.478 0.00 0.00 0.00 3.41
412 424 4.774200 CCTCCATCCCAAAATTCTTGTCTT 59.226 41.667 0.00 0.00 0.00 3.01
413 425 5.951747 CCTCCATCCCAAAATTCTTGTCTTA 59.048 40.000 0.00 0.00 0.00 2.10
414 426 6.096001 CCTCCATCCCAAAATTCTTGTCTTAG 59.904 42.308 0.00 0.00 0.00 2.18
415 427 6.789268 TCCATCCCAAAATTCTTGTCTTAGA 58.211 36.000 0.00 0.00 0.00 2.10
416 428 7.237982 TCCATCCCAAAATTCTTGTCTTAGAA 58.762 34.615 0.00 0.00 38.43 2.10
417 429 7.895429 TCCATCCCAAAATTCTTGTCTTAGAAT 59.105 33.333 0.00 0.00 44.62 2.40
426 438 6.554334 TTCTTGTCTTAGAATTTTGGGACG 57.446 37.500 0.00 0.00 0.00 4.79
427 439 5.001232 TCTTGTCTTAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
428 440 4.627284 TGTCTTAGAATTTTGGGACGGA 57.373 40.909 0.00 0.00 0.00 4.69
429 441 4.575885 TGTCTTAGAATTTTGGGACGGAG 58.424 43.478 0.00 0.00 0.00 4.63
430 442 3.939592 GTCTTAGAATTTTGGGACGGAGG 59.060 47.826 0.00 0.00 0.00 4.30
431 443 3.054655 TCTTAGAATTTTGGGACGGAGGG 60.055 47.826 0.00 0.00 0.00 4.30
432 444 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
433 445 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
483 495 7.856894 GTCGGCTTTGTTGTTTTGTAAGTATTA 59.143 33.333 0.00 0.00 0.00 0.98
499 515 5.597813 AGTATTATGCAGCAAATAGTCGC 57.402 39.130 0.00 0.00 0.00 5.19
506 522 2.936498 GCAGCAAATAGTCGCTTAAGGA 59.064 45.455 4.29 0.00 35.96 3.36
508 524 4.728021 GCAGCAAATAGTCGCTTAAGGAAC 60.728 45.833 4.29 0.00 35.96 3.62
519 535 4.037690 CGCTTAAGGAACATGCAAATAGC 58.962 43.478 4.29 0.00 45.96 2.97
520 536 4.201950 CGCTTAAGGAACATGCAAATAGCT 60.202 41.667 4.29 0.00 45.94 3.32
521 537 5.277047 GCTTAAGGAACATGCAAATAGCTC 58.723 41.667 4.29 0.00 45.94 4.09
522 538 5.163622 GCTTAAGGAACATGCAAATAGCTCA 60.164 40.000 4.29 0.00 45.94 4.26
523 539 6.460676 GCTTAAGGAACATGCAAATAGCTCAT 60.461 38.462 4.29 0.00 45.94 2.90
524 540 7.255242 GCTTAAGGAACATGCAAATAGCTCATA 60.255 37.037 4.29 0.00 45.94 2.15
525 541 8.696043 TTAAGGAACATGCAAATAGCTCATAT 57.304 30.769 0.00 0.00 45.94 1.78
526 542 6.570672 AGGAACATGCAAATAGCTCATATG 57.429 37.500 0.00 0.00 45.94 1.78
527 543 6.066690 AGGAACATGCAAATAGCTCATATGT 58.933 36.000 1.90 0.00 45.94 2.29
528 544 6.016527 AGGAACATGCAAATAGCTCATATGTG 60.017 38.462 1.90 1.02 45.94 3.21
529 545 6.238842 GGAACATGCAAATAGCTCATATGTGT 60.239 38.462 1.90 0.00 45.94 3.72
530 546 6.704289 ACATGCAAATAGCTCATATGTGTT 57.296 33.333 1.90 0.75 45.94 3.32
531 547 7.806409 ACATGCAAATAGCTCATATGTGTTA 57.194 32.000 1.90 3.21 45.94 2.41
532 548 7.642669 ACATGCAAATAGCTCATATGTGTTAC 58.357 34.615 1.90 0.00 45.94 2.50
533 549 7.282901 ACATGCAAATAGCTCATATGTGTTACA 59.717 33.333 1.90 0.00 45.94 2.41
534 550 7.806409 TGCAAATAGCTCATATGTGTTACAT 57.194 32.000 1.90 0.00 45.94 2.29
535 551 8.224389 TGCAAATAGCTCATATGTGTTACATT 57.776 30.769 1.90 0.21 45.94 2.71
536 552 8.344831 TGCAAATAGCTCATATGTGTTACATTC 58.655 33.333 1.90 0.00 45.94 2.67
537 553 8.562892 GCAAATAGCTCATATGTGTTACATTCT 58.437 33.333 1.90 0.00 38.99 2.40
538 554 9.874215 CAAATAGCTCATATGTGTTACATTCTG 57.126 33.333 1.90 0.00 39.88 3.02
539 555 9.836864 AAATAGCTCATATGTGTTACATTCTGA 57.163 29.630 1.90 3.92 39.88 3.27
543 559 9.265901 AGCTCATATGTGTTACATTCTGATAAC 57.734 33.333 1.90 0.00 39.88 1.89
544 560 8.499162 GCTCATATGTGTTACATTCTGATAACC 58.501 37.037 1.90 0.00 39.88 2.85
545 561 9.546428 CTCATATGTGTTACATTCTGATAACCA 57.454 33.333 1.90 0.00 39.88 3.67
550 566 8.500753 TGTGTTACATTCTGATAACCATTACC 57.499 34.615 0.00 0.00 31.48 2.85
551 567 8.103935 TGTGTTACATTCTGATAACCATTACCA 58.896 33.333 0.00 0.00 31.48 3.25
552 568 8.952278 GTGTTACATTCTGATAACCATTACCAA 58.048 33.333 0.00 0.00 31.48 3.67
553 569 9.693739 TGTTACATTCTGATAACCATTACCAAT 57.306 29.630 0.00 0.00 31.48 3.16
555 571 9.913310 TTACATTCTGATAACCATTACCAATCA 57.087 29.630 0.00 0.00 0.00 2.57
556 572 8.821686 ACATTCTGATAACCATTACCAATCAA 57.178 30.769 0.00 0.00 0.00 2.57
557 573 8.906867 ACATTCTGATAACCATTACCAATCAAG 58.093 33.333 0.00 0.00 0.00 3.02
558 574 9.123902 CATTCTGATAACCATTACCAATCAAGA 57.876 33.333 0.00 0.00 0.00 3.02
559 575 8.737168 TTCTGATAACCATTACCAATCAAGAG 57.263 34.615 0.00 0.00 0.00 2.85
560 576 7.282585 TCTGATAACCATTACCAATCAAGAGG 58.717 38.462 0.00 0.00 0.00 3.69
561 577 6.969043 TGATAACCATTACCAATCAAGAGGT 58.031 36.000 0.00 0.00 41.89 3.85
562 578 6.828273 TGATAACCATTACCAATCAAGAGGTG 59.172 38.462 0.00 0.00 38.87 4.00
563 579 3.968265 ACCATTACCAATCAAGAGGTGG 58.032 45.455 0.00 2.03 38.87 4.61
565 581 4.202673 ACCATTACCAATCAAGAGGTGGTT 60.203 41.667 11.97 0.00 43.19 3.67
566 582 4.772100 CCATTACCAATCAAGAGGTGGTTT 59.228 41.667 11.97 1.25 43.19 3.27
567 583 5.245977 CCATTACCAATCAAGAGGTGGTTTT 59.754 40.000 11.97 0.98 43.19 2.43
568 584 6.435904 CCATTACCAATCAAGAGGTGGTTTTA 59.564 38.462 11.97 2.26 43.19 1.52
569 585 6.887626 TTACCAATCAAGAGGTGGTTTTAC 57.112 37.500 11.97 0.00 43.19 2.01
570 586 4.798882 ACCAATCAAGAGGTGGTTTTACA 58.201 39.130 3.13 0.00 43.19 2.41
571 587 5.205056 ACCAATCAAGAGGTGGTTTTACAA 58.795 37.500 3.13 0.00 43.19 2.41
572 588 5.301805 ACCAATCAAGAGGTGGTTTTACAAG 59.698 40.000 3.13 0.00 43.19 3.16
573 589 5.301805 CCAATCAAGAGGTGGTTTTACAAGT 59.698 40.000 0.00 0.00 0.00 3.16
574 590 6.488683 CCAATCAAGAGGTGGTTTTACAAGTA 59.511 38.462 0.00 0.00 0.00 2.24
575 591 7.176690 CCAATCAAGAGGTGGTTTTACAAGTAT 59.823 37.037 0.00 0.00 0.00 2.12
576 592 8.576442 CAATCAAGAGGTGGTTTTACAAGTATT 58.424 33.333 0.00 0.00 0.00 1.89
577 593 8.706322 ATCAAGAGGTGGTTTTACAAGTATTT 57.294 30.769 0.00 0.00 0.00 1.40
581 597 8.301252 AGAGGTGGTTTTACAAGTATTTTGTT 57.699 30.769 0.00 0.00 34.11 2.83
593 609 8.371770 ACAAGTATTTTGTTGTTTGTTTGTGT 57.628 26.923 0.00 0.00 32.93 3.72
594 610 8.491950 ACAAGTATTTTGTTGTTTGTTTGTGTC 58.508 29.630 0.00 0.00 32.93 3.67
595 611 7.589574 AGTATTTTGTTGTTTGTTTGTGTCC 57.410 32.000 0.00 0.00 0.00 4.02
596 612 7.382898 AGTATTTTGTTGTTTGTTTGTGTCCT 58.617 30.769 0.00 0.00 0.00 3.85
597 613 7.875554 AGTATTTTGTTGTTTGTTTGTGTCCTT 59.124 29.630 0.00 0.00 0.00 3.36
598 614 6.532365 TTTTGTTGTTTGTTTGTGTCCTTC 57.468 33.333 0.00 0.00 0.00 3.46
599 615 3.827625 TGTTGTTTGTTTGTGTCCTTCG 58.172 40.909 0.00 0.00 0.00 3.79
600 616 3.253677 TGTTGTTTGTTTGTGTCCTTCGT 59.746 39.130 0.00 0.00 0.00 3.85
601 617 3.750639 TGTTTGTTTGTGTCCTTCGTC 57.249 42.857 0.00 0.00 0.00 4.20
602 618 3.340034 TGTTTGTTTGTGTCCTTCGTCT 58.660 40.909 0.00 0.00 0.00 4.18
603 619 3.754323 TGTTTGTTTGTGTCCTTCGTCTT 59.246 39.130 0.00 0.00 0.00 3.01
604 620 4.216687 TGTTTGTTTGTGTCCTTCGTCTTT 59.783 37.500 0.00 0.00 0.00 2.52
605 621 4.349663 TTGTTTGTGTCCTTCGTCTTTG 57.650 40.909 0.00 0.00 0.00 2.77
606 622 3.340034 TGTTTGTGTCCTTCGTCTTTGT 58.660 40.909 0.00 0.00 0.00 2.83
607 623 3.126171 TGTTTGTGTCCTTCGTCTTTGTG 59.874 43.478 0.00 0.00 0.00 3.33
608 624 2.684001 TGTGTCCTTCGTCTTTGTGT 57.316 45.000 0.00 0.00 0.00 3.72
609 625 2.546778 TGTGTCCTTCGTCTTTGTGTC 58.453 47.619 0.00 0.00 0.00 3.67
610 626 1.521423 GTGTCCTTCGTCTTTGTGTCG 59.479 52.381 0.00 0.00 0.00 4.35
611 627 1.135527 TGTCCTTCGTCTTTGTGTCGT 59.864 47.619 0.00 0.00 0.00 4.34
612 628 1.521423 GTCCTTCGTCTTTGTGTCGTG 59.479 52.381 0.00 0.00 0.00 4.35
613 629 0.232303 CCTTCGTCTTTGTGTCGTGC 59.768 55.000 0.00 0.00 0.00 5.34
614 630 0.111704 CTTCGTCTTTGTGTCGTGCG 60.112 55.000 0.00 0.00 0.00 5.34
615 631 0.525882 TTCGTCTTTGTGTCGTGCGA 60.526 50.000 0.00 0.00 0.00 5.10
616 632 0.318360 TCGTCTTTGTGTCGTGCGAT 60.318 50.000 0.00 0.00 0.00 4.58
617 633 0.179275 CGTCTTTGTGTCGTGCGATG 60.179 55.000 0.00 0.00 0.00 3.84
618 634 0.451135 GTCTTTGTGTCGTGCGATGC 60.451 55.000 0.00 0.00 0.00 3.91
619 635 0.878086 TCTTTGTGTCGTGCGATGCA 60.878 50.000 0.00 0.00 35.60 3.96
620 636 0.041400 CTTTGTGTCGTGCGATGCAA 60.041 50.000 0.00 3.98 41.47 4.08
621 637 0.378610 TTTGTGTCGTGCGATGCAAA 59.621 45.000 16.24 16.24 41.47 3.68
622 638 0.590682 TTGTGTCGTGCGATGCAAAT 59.409 45.000 0.00 0.00 41.47 2.32
623 639 0.110283 TGTGTCGTGCGATGCAAATG 60.110 50.000 0.00 0.00 41.47 2.32
624 640 0.794229 GTGTCGTGCGATGCAAATGG 60.794 55.000 0.00 0.00 41.47 3.16
625 641 1.226379 GTCGTGCGATGCAAATGGG 60.226 57.895 0.00 0.00 41.47 4.00
626 642 1.673993 TCGTGCGATGCAAATGGGT 60.674 52.632 0.00 0.00 41.47 4.51
627 643 1.212490 CGTGCGATGCAAATGGGTT 59.788 52.632 0.00 0.00 41.47 4.11
628 644 1.072116 CGTGCGATGCAAATGGGTTG 61.072 55.000 0.00 0.00 41.47 3.77
629 645 0.038343 GTGCGATGCAAATGGGTTGT 60.038 50.000 0.00 0.00 41.47 3.32
630 646 0.678395 TGCGATGCAAATGGGTTGTT 59.322 45.000 0.00 0.00 39.63 2.83
631 647 1.069823 TGCGATGCAAATGGGTTGTTT 59.930 42.857 0.00 0.00 39.63 2.83
632 648 2.142319 GCGATGCAAATGGGTTGTTTT 58.858 42.857 0.00 0.00 39.63 2.43
633 649 2.096318 GCGATGCAAATGGGTTGTTTTG 60.096 45.455 0.00 0.00 39.63 2.44
634 650 3.129871 CGATGCAAATGGGTTGTTTTGT 58.870 40.909 0.00 0.00 39.63 2.83
635 651 3.559242 CGATGCAAATGGGTTGTTTTGTT 59.441 39.130 0.00 0.00 39.63 2.83
636 652 4.747108 CGATGCAAATGGGTTGTTTTGTTA 59.253 37.500 0.00 0.00 39.63 2.41
637 653 5.107530 CGATGCAAATGGGTTGTTTTGTTAG 60.108 40.000 0.00 0.00 39.63 2.34
638 654 5.344743 TGCAAATGGGTTGTTTTGTTAGA 57.655 34.783 0.00 0.00 39.63 2.10
639 655 5.112686 TGCAAATGGGTTGTTTTGTTAGAC 58.887 37.500 0.00 0.00 39.63 2.59
640 656 5.105146 TGCAAATGGGTTGTTTTGTTAGACT 60.105 36.000 0.00 0.00 39.63 3.24
641 657 5.815222 GCAAATGGGTTGTTTTGTTAGACTT 59.185 36.000 0.00 0.00 39.63 3.01
642 658 6.019075 GCAAATGGGTTGTTTTGTTAGACTTC 60.019 38.462 0.00 0.00 39.63 3.01
643 659 7.264947 CAAATGGGTTGTTTTGTTAGACTTCT 58.735 34.615 0.00 0.00 32.08 2.85
644 660 5.828299 TGGGTTGTTTTGTTAGACTTCTG 57.172 39.130 0.00 0.00 0.00 3.02
645 661 5.258051 TGGGTTGTTTTGTTAGACTTCTGT 58.742 37.500 0.00 0.00 0.00 3.41
646 662 5.124776 TGGGTTGTTTTGTTAGACTTCTGTG 59.875 40.000 0.00 0.00 0.00 3.66
647 663 5.034797 GGTTGTTTTGTTAGACTTCTGTGC 58.965 41.667 0.00 0.00 0.00 4.57
648 664 5.392595 GGTTGTTTTGTTAGACTTCTGTGCA 60.393 40.000 0.00 0.00 0.00 4.57
649 665 6.265577 GTTGTTTTGTTAGACTTCTGTGCAT 58.734 36.000 0.00 0.00 0.00 3.96
650 666 6.060028 TGTTTTGTTAGACTTCTGTGCATC 57.940 37.500 0.00 0.00 0.00 3.91
651 667 5.588246 TGTTTTGTTAGACTTCTGTGCATCA 59.412 36.000 0.00 0.00 0.00 3.07
652 668 6.094742 TGTTTTGTTAGACTTCTGTGCATCAA 59.905 34.615 0.00 0.00 0.00 2.57
653 669 6.691754 TTTGTTAGACTTCTGTGCATCAAA 57.308 33.333 0.00 0.00 0.00 2.69
654 670 5.929697 TGTTAGACTTCTGTGCATCAAAG 57.070 39.130 0.00 0.00 0.00 2.77
655 671 4.756642 TGTTAGACTTCTGTGCATCAAAGG 59.243 41.667 0.00 0.00 0.00 3.11
656 672 3.777106 AGACTTCTGTGCATCAAAGGA 57.223 42.857 0.00 0.00 0.00 3.36
657 673 3.406764 AGACTTCTGTGCATCAAAGGAC 58.593 45.455 0.00 0.00 0.00 3.85
658 674 3.141398 GACTTCTGTGCATCAAAGGACA 58.859 45.455 0.00 0.00 37.52 4.02
659 675 3.755378 GACTTCTGTGCATCAAAGGACAT 59.245 43.478 0.00 0.00 39.17 3.06
660 676 4.147321 ACTTCTGTGCATCAAAGGACATT 58.853 39.130 0.00 0.00 39.17 2.71
661 677 4.022589 ACTTCTGTGCATCAAAGGACATTG 60.023 41.667 0.00 0.00 39.17 2.82
662 678 2.821378 TCTGTGCATCAAAGGACATTGG 59.179 45.455 0.00 0.00 39.17 3.16
663 679 2.559668 CTGTGCATCAAAGGACATTGGT 59.440 45.455 0.00 0.00 39.17 3.67
664 680 2.296752 TGTGCATCAAAGGACATTGGTG 59.703 45.455 0.00 0.00 42.94 4.17
667 683 3.226346 CATCAAAGGACATTGGTGCAG 57.774 47.619 0.00 0.00 34.88 4.41
668 684 2.655090 TCAAAGGACATTGGTGCAGA 57.345 45.000 0.00 0.00 37.91 4.26
669 685 2.507484 TCAAAGGACATTGGTGCAGAG 58.493 47.619 0.00 0.00 37.91 3.35
670 686 2.106338 TCAAAGGACATTGGTGCAGAGA 59.894 45.455 0.00 0.00 37.91 3.10
671 687 2.191128 AAGGACATTGGTGCAGAGAC 57.809 50.000 0.00 0.00 37.91 3.36
672 688 0.036952 AGGACATTGGTGCAGAGACG 60.037 55.000 0.00 0.00 37.91 4.18
673 689 1.021390 GGACATTGGTGCAGAGACGG 61.021 60.000 0.00 0.00 35.12 4.79
674 690 0.037326 GACATTGGTGCAGAGACGGA 60.037 55.000 0.00 0.00 0.00 4.69
675 691 0.396435 ACATTGGTGCAGAGACGGAA 59.604 50.000 0.00 0.00 0.00 4.30
676 692 1.003580 ACATTGGTGCAGAGACGGAAT 59.996 47.619 0.00 0.00 0.00 3.01
677 693 2.236146 ACATTGGTGCAGAGACGGAATA 59.764 45.455 0.00 0.00 0.00 1.75
678 694 3.270027 CATTGGTGCAGAGACGGAATAA 58.730 45.455 0.00 0.00 0.00 1.40
679 695 2.672961 TGGTGCAGAGACGGAATAAG 57.327 50.000 0.00 0.00 0.00 1.73
680 696 2.176045 TGGTGCAGAGACGGAATAAGA 58.824 47.619 0.00 0.00 0.00 2.10
681 697 2.094182 TGGTGCAGAGACGGAATAAGAC 60.094 50.000 0.00 0.00 0.00 3.01
682 698 2.166664 GGTGCAGAGACGGAATAAGACT 59.833 50.000 0.00 0.00 0.00 3.24
683 699 3.368531 GGTGCAGAGACGGAATAAGACTT 60.369 47.826 0.00 0.00 0.00 3.01
684 700 4.246458 GTGCAGAGACGGAATAAGACTTT 58.754 43.478 0.00 0.00 0.00 2.66
685 701 4.691216 GTGCAGAGACGGAATAAGACTTTT 59.309 41.667 0.00 0.00 0.00 2.27
686 702 4.690748 TGCAGAGACGGAATAAGACTTTTG 59.309 41.667 0.00 0.00 0.00 2.44
687 703 4.929808 GCAGAGACGGAATAAGACTTTTGA 59.070 41.667 0.00 0.00 0.00 2.69
688 704 5.582665 GCAGAGACGGAATAAGACTTTTGAT 59.417 40.000 0.00 0.00 0.00 2.57
689 705 6.757010 GCAGAGACGGAATAAGACTTTTGATA 59.243 38.462 0.00 0.00 0.00 2.15
690 706 7.439655 GCAGAGACGGAATAAGACTTTTGATAT 59.560 37.037 0.00 0.00 0.00 1.63
691 707 9.967346 CAGAGACGGAATAAGACTTTTGATATA 57.033 33.333 0.00 0.00 0.00 0.86
724 740 5.874810 TGAATGTGTTGGCTACTGAATACTC 59.125 40.000 0.01 0.00 0.00 2.59
737 753 4.040952 ACTGAATACTCTTGAGTTGCCACT 59.959 41.667 8.66 0.00 35.17 4.00
757 779 6.206829 GCCACTCTGTTCCTTTAGTTTAACAT 59.793 38.462 0.00 0.00 31.88 2.71
758 780 7.584987 CCACTCTGTTCCTTTAGTTTAACATG 58.415 38.462 0.00 0.00 31.88 3.21
759 781 7.308589 CCACTCTGTTCCTTTAGTTTAACATGG 60.309 40.741 0.00 0.00 31.88 3.66
760 782 7.228706 CACTCTGTTCCTTTAGTTTAACATGGT 59.771 37.037 0.00 0.00 31.88 3.55
761 783 8.434392 ACTCTGTTCCTTTAGTTTAACATGGTA 58.566 33.333 0.00 0.00 31.88 3.25
762 784 9.449719 CTCTGTTCCTTTAGTTTAACATGGTAT 57.550 33.333 0.00 0.00 31.88 2.73
763 785 9.444600 TCTGTTCCTTTAGTTTAACATGGTATC 57.555 33.333 0.00 0.00 31.88 2.24
764 786 9.449719 CTGTTCCTTTAGTTTAACATGGTATCT 57.550 33.333 0.00 0.00 31.88 1.98
765 787 9.802039 TGTTCCTTTAGTTTAACATGGTATCTT 57.198 29.630 0.00 0.00 0.00 2.40
768 790 8.736244 TCCTTTAGTTTAACATGGTATCTTTGC 58.264 33.333 0.00 0.00 0.00 3.68
769 791 8.739972 CCTTTAGTTTAACATGGTATCTTTGCT 58.260 33.333 0.00 0.00 0.00 3.91
794 816 1.632920 TGCGGGGATTATCATGGCATA 59.367 47.619 0.00 0.00 0.00 3.14
798 820 4.202050 GCGGGGATTATCATGGCATATTTC 60.202 45.833 0.00 0.00 0.00 2.17
800 822 5.066893 CGGGGATTATCATGGCATATTTCAG 59.933 44.000 0.00 0.00 0.00 3.02
801 823 5.954150 GGGGATTATCATGGCATATTTCAGT 59.046 40.000 0.00 0.00 0.00 3.41
805 827 6.964807 TTATCATGGCATATTTCAGTGCTT 57.035 33.333 0.00 0.00 41.04 3.91
808 830 4.891168 TCATGGCATATTTCAGTGCTTGAT 59.109 37.500 0.00 0.00 41.04 2.57
809 831 4.642445 TGGCATATTTCAGTGCTTGATG 57.358 40.909 0.00 0.00 41.04 3.07
810 832 3.382227 TGGCATATTTCAGTGCTTGATGG 59.618 43.478 0.00 0.00 41.04 3.51
815 837 1.913778 TTCAGTGCTTGATGGCATGT 58.086 45.000 3.81 0.00 44.34 3.21
819 841 4.018490 TCAGTGCTTGATGGCATGTAATT 58.982 39.130 3.81 0.00 44.34 1.40
826 848 6.879993 TGCTTGATGGCATGTAATTTTCATTT 59.120 30.769 3.81 0.00 37.29 2.32
829 851 7.185318 TGATGGCATGTAATTTTCATTTCCT 57.815 32.000 3.81 0.00 0.00 3.36
830 852 8.303780 TGATGGCATGTAATTTTCATTTCCTA 57.696 30.769 3.81 0.00 0.00 2.94
832 854 7.716799 TGGCATGTAATTTTCATTTCCTAGT 57.283 32.000 0.00 0.00 0.00 2.57
834 856 8.902806 TGGCATGTAATTTTCATTTCCTAGTAG 58.097 33.333 0.00 0.00 0.00 2.57
835 857 9.120538 GGCATGTAATTTTCATTTCCTAGTAGA 57.879 33.333 0.00 0.00 0.00 2.59
882 907 5.574970 AAAAAGAGGGTCTGAATCTCTGT 57.425 39.130 10.49 4.27 37.85 3.41
883 908 6.688073 AAAAAGAGGGTCTGAATCTCTGTA 57.312 37.500 10.49 0.00 37.85 2.74
884 909 6.882768 AAAAGAGGGTCTGAATCTCTGTAT 57.117 37.500 10.49 1.18 37.85 2.29
885 910 5.867903 AAGAGGGTCTGAATCTCTGTATG 57.132 43.478 10.49 0.00 37.85 2.39
893 918 7.256119 GGGTCTGAATCTCTGTATGTGTGATAT 60.256 40.741 0.00 0.00 0.00 1.63
899 924 9.443283 GAATCTCTGTATGTGTGATATTTTTGC 57.557 33.333 0.00 0.00 0.00 3.68
900 925 7.920160 TCTCTGTATGTGTGATATTTTTGCA 57.080 32.000 0.00 0.00 0.00 4.08
923 948 6.518200 GCAAACTGGATCTTTATTTTGGGACA 60.518 38.462 0.00 0.00 0.00 4.02
958 990 5.827797 ACTGAACAATAGAGCTTGTTTTCCA 59.172 36.000 3.15 0.00 46.50 3.53
982 1036 6.006275 TGCAGGATATAGCCTTTTCTTCTT 57.994 37.500 6.86 0.00 35.66 2.52
983 1037 5.824624 TGCAGGATATAGCCTTTTCTTCTTG 59.175 40.000 6.86 0.00 35.66 3.02
984 1038 5.240403 GCAGGATATAGCCTTTTCTTCTTGG 59.760 44.000 6.86 0.00 35.66 3.61
985 1039 5.767168 CAGGATATAGCCTTTTCTTCTTGGG 59.233 44.000 6.86 0.00 35.66 4.12
986 1040 5.433381 AGGATATAGCCTTTTCTTCTTGGGT 59.567 40.000 2.93 0.00 33.46 4.51
1173 1227 1.066286 CACTGGCAAGAGAGGAAGGAG 60.066 57.143 0.00 0.00 0.00 3.69
1232 1286 2.351244 TGAGGCTAGGTGTGAGGCG 61.351 63.158 0.00 0.00 43.94 5.52
1255 1309 0.320073 TGCCGTACCAACTTCTTCCG 60.320 55.000 0.00 0.00 0.00 4.30
1454 1511 1.065782 GGAGGAGGAAAGGAAGCTGAC 60.066 57.143 0.00 0.00 0.00 3.51
1456 1513 0.391793 GGAGGAAAGGAAGCTGACGG 60.392 60.000 0.00 0.00 0.00 4.79
1464 1521 1.420138 AGGAAGCTGACGGGAGAAAAA 59.580 47.619 0.00 0.00 0.00 1.94
1484 1544 5.467035 AAACAGAAGGAGAAGTCTGAGAG 57.533 43.478 7.63 0.00 43.32 3.20
1489 1549 3.100207 AGGAGAAGTCTGAGAGAAGGG 57.900 52.381 0.00 0.00 0.00 3.95
1493 1553 2.381961 AGAAGTCTGAGAGAAGGGAGGT 59.618 50.000 0.00 0.00 0.00 3.85
1500 1572 4.044825 TCTGAGAGAAGGGAGGTAAAGAGT 59.955 45.833 0.00 0.00 0.00 3.24
1546 1618 2.158608 TCAGACACTGACTCTGACTCCA 60.159 50.000 0.00 0.00 39.41 3.86
1555 1627 5.189342 ACTGACTCTGACTCCAAATCATCAT 59.811 40.000 0.00 0.00 0.00 2.45
1563 1635 3.136763 CTCCAAATCATCATCGAGTGGG 58.863 50.000 0.00 0.00 0.00 4.61
1587 1659 4.220821 TCTGAGTATTCTTCTGAAAGCGGT 59.779 41.667 0.00 0.00 35.63 5.68
1603 1675 2.094649 AGCGGTAGTTCAAGCTACAGTC 60.095 50.000 6.40 0.52 42.18 3.51
1605 1677 2.230508 CGGTAGTTCAAGCTACAGTCCA 59.769 50.000 6.40 0.00 42.18 4.02
1686 1761 0.037326 GGGACAGCACGTCTTCATCA 60.037 55.000 6.29 0.00 44.70 3.07
1696 1774 1.678627 CGTCTTCATCATCCTCCTCGT 59.321 52.381 0.00 0.00 0.00 4.18
1697 1775 2.099921 CGTCTTCATCATCCTCCTCGTT 59.900 50.000 0.00 0.00 0.00 3.85
1701 1779 4.524714 TCTTCATCATCCTCCTCGTTATCC 59.475 45.833 0.00 0.00 0.00 2.59
1702 1780 3.844640 TCATCATCCTCCTCGTTATCCA 58.155 45.455 0.00 0.00 0.00 3.41
1746 1824 4.597404 TGACAATAATGGCAGCAACAAA 57.403 36.364 0.00 0.00 40.56 2.83
1747 1825 4.953667 TGACAATAATGGCAGCAACAAAA 58.046 34.783 0.00 0.00 40.56 2.44
1748 1826 4.989797 TGACAATAATGGCAGCAACAAAAG 59.010 37.500 0.00 0.00 40.56 2.27
1772 1850 3.748021 GCAAGAAGCGTGGTTACAC 57.252 52.632 0.00 0.00 44.23 2.90
1826 1924 3.809279 GGAACCAAGGAGCAAAAACAATG 59.191 43.478 0.00 0.00 0.00 2.82
1969 2531 9.755804 TTAGAGCTCACTCATATAAATTGTCAG 57.244 33.333 17.77 0.00 46.09 3.51
2010 2572 6.716628 ACATGTTCTGCCCATATTATAACTGG 59.283 38.462 8.38 8.38 0.00 4.00
2163 2728 0.393267 TCGCCCCAAAAATCTACCCG 60.393 55.000 0.00 0.00 0.00 5.28
2164 2729 0.678684 CGCCCCAAAAATCTACCCGT 60.679 55.000 0.00 0.00 0.00 5.28
2165 2730 1.552578 GCCCCAAAAATCTACCCGTT 58.447 50.000 0.00 0.00 0.00 4.44
2250 2815 4.299796 ATGTTGGGCCCGCTGGTT 62.300 61.111 19.37 0.00 0.00 3.67
2364 2936 7.495901 TCTTTATGTGGCATTTCTTCAAACAA 58.504 30.769 0.00 0.00 0.00 2.83
2403 3021 2.332654 GGTTCTTGCCGGCGAACAT 61.333 57.895 33.75 0.00 40.88 2.71
2568 3186 1.956170 CCAAGCGCGTCACAGAAGT 60.956 57.895 8.43 0.00 0.00 3.01
2589 3207 2.203788 AAGCGAGGGGGACAGTGA 60.204 61.111 0.00 0.00 0.00 3.41
2601 3219 0.674534 GACAGTGACACGGTCTTCCT 59.325 55.000 25.70 0.00 39.64 3.36
2606 3224 1.371558 GACACGGTCTTCCTTGGCT 59.628 57.895 0.00 0.00 37.92 4.75
2621 3239 1.227674 GGCTGGATAAGGCCGACAG 60.228 63.158 0.00 3.93 45.73 3.51
2622 3240 1.889573 GCTGGATAAGGCCGACAGC 60.890 63.158 19.02 19.02 46.24 4.40
2768 3388 3.541713 GCGCGGGGGAGAGAGAAT 61.542 66.667 8.83 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.602377 GAACGTCAAAAGTGAGGGGTG 59.398 52.381 0.00 0.00 42.71 4.61
1 2 1.808891 CGAACGTCAAAAGTGAGGGGT 60.809 52.381 0.00 0.00 42.71 4.95
29 30 3.379445 AAGGACGTCGATGGCGGT 61.379 61.111 9.92 0.00 38.28 5.68
30 31 2.885644 CAAGGACGTCGATGGCGG 60.886 66.667 9.92 0.00 38.28 6.13
45 46 1.610624 GGAGGCGATGAAGTGGAACAA 60.611 52.381 0.00 0.00 44.16 2.83
46 47 0.036388 GGAGGCGATGAAGTGGAACA 60.036 55.000 0.00 0.00 41.43 3.18
48 49 0.909610 AGGGAGGCGATGAAGTGGAA 60.910 55.000 0.00 0.00 0.00 3.53
52 53 1.965754 GAGCAGGGAGGCGATGAAGT 61.966 60.000 0.00 0.00 39.27 3.01
54 55 2.735772 GGAGCAGGGAGGCGATGAA 61.736 63.158 0.00 0.00 39.27 2.57
56 57 3.160047 AGGAGCAGGGAGGCGATG 61.160 66.667 0.00 0.00 39.27 3.84
98 100 2.070783 TCGTACCTCGAAAACCAATGC 58.929 47.619 0.00 0.00 45.98 3.56
118 120 6.716628 TCAACTAATCTGAATGCCAAGAAACT 59.283 34.615 0.00 0.00 0.00 2.66
121 123 6.885918 TGATCAACTAATCTGAATGCCAAGAA 59.114 34.615 0.00 0.00 0.00 2.52
124 126 6.317140 GTCTGATCAACTAATCTGAATGCCAA 59.683 38.462 0.00 0.00 35.99 4.52
151 154 0.665835 AAAATTGTGGAGTTGCGCGA 59.334 45.000 12.10 0.00 0.00 5.87
155 158 1.872952 GCCCAAAAATTGTGGAGTTGC 59.127 47.619 3.20 0.00 38.54 4.17
178 181 1.822990 GATGAACAGTACTGTCCCGGA 59.177 52.381 28.04 11.16 44.13 5.14
182 185 5.278071 CGGATCTAGATGAACAGTACTGTCC 60.278 48.000 28.04 17.59 44.13 4.02
183 186 5.753744 CGGATCTAGATGAACAGTACTGTC 58.246 45.833 28.04 20.28 44.13 3.51
191 194 1.048601 GGGGCGGATCTAGATGAACA 58.951 55.000 10.74 0.00 0.00 3.18
193 196 1.342074 CTGGGGCGGATCTAGATGAA 58.658 55.000 10.74 0.00 0.00 2.57
194 197 0.542938 CCTGGGGCGGATCTAGATGA 60.543 60.000 10.74 0.00 0.00 2.92
239 243 0.765510 AACTCCTGTGACCCAACTCC 59.234 55.000 0.00 0.00 0.00 3.85
256 260 8.021396 GGATAAATACAAGTCAACTGACCAAAC 58.979 37.037 6.23 0.00 45.85 2.93
259 263 7.016153 AGGATAAATACAAGTCAACTGACCA 57.984 36.000 6.23 0.00 45.85 4.02
280 284 6.143915 AGGGCAACTTATCAATCTACTAGGA 58.856 40.000 0.00 0.00 0.00 2.94
284 288 9.343539 GATTTTAGGGCAACTTATCAATCTACT 57.656 33.333 0.00 0.00 31.04 2.57
287 291 7.503902 GGAGATTTTAGGGCAACTTATCAATCT 59.496 37.037 0.00 0.00 39.37 2.40
317 321 4.196971 GGCACATAGGTTAAAATCGGACT 58.803 43.478 0.00 0.00 0.00 3.85
322 330 4.020543 TGGTGGGCACATAGGTTAAAATC 58.979 43.478 0.00 0.00 0.00 2.17
335 343 2.641197 CCAGTAACTTGGTGGGCAC 58.359 57.895 0.00 0.00 33.38 5.01
346 358 6.393171 ACGGAATAAGTCAGTAACCAGTAAC 58.607 40.000 0.00 0.00 32.32 2.50
352 364 3.061697 CGCAACGGAATAAGTCAGTAACC 59.938 47.826 0.00 0.00 33.02 2.85
357 369 5.279384 AGTATACGCAACGGAATAAGTCAG 58.721 41.667 0.00 0.00 0.00 3.51
369 381 6.600822 TGGAGGGAGTATATAGTATACGCAAC 59.399 42.308 11.23 5.49 0.00 4.17
373 385 6.941436 GGGATGGAGGGAGTATATAGTATACG 59.059 46.154 0.00 0.00 0.00 3.06
384 396 4.119155 AGAATTTTGGGATGGAGGGAGTA 58.881 43.478 0.00 0.00 0.00 2.59
385 397 2.929043 AGAATTTTGGGATGGAGGGAGT 59.071 45.455 0.00 0.00 0.00 3.85
386 398 3.677156 AGAATTTTGGGATGGAGGGAG 57.323 47.619 0.00 0.00 0.00 4.30
387 399 3.077391 ACAAGAATTTTGGGATGGAGGGA 59.923 43.478 5.68 0.00 0.00 4.20
388 400 3.444029 ACAAGAATTTTGGGATGGAGGG 58.556 45.455 5.68 0.00 0.00 4.30
389 401 4.347607 AGACAAGAATTTTGGGATGGAGG 58.652 43.478 5.68 0.00 0.00 4.30
390 402 5.990120 AAGACAAGAATTTTGGGATGGAG 57.010 39.130 5.68 0.00 0.00 3.86
391 403 6.789268 TCTAAGACAAGAATTTTGGGATGGA 58.211 36.000 5.68 0.00 0.00 3.41
392 404 7.466746 TTCTAAGACAAGAATTTTGGGATGG 57.533 36.000 5.68 0.00 30.54 3.51
402 414 6.151144 CCGTCCCAAAATTCTAAGACAAGAAT 59.849 38.462 0.00 0.00 45.91 2.40
403 415 5.472137 CCGTCCCAAAATTCTAAGACAAGAA 59.528 40.000 0.00 0.00 39.71 2.52
404 416 5.001232 CCGTCCCAAAATTCTAAGACAAGA 58.999 41.667 0.00 0.00 0.00 3.02
405 417 5.001232 TCCGTCCCAAAATTCTAAGACAAG 58.999 41.667 0.00 0.00 0.00 3.16
406 418 4.975631 TCCGTCCCAAAATTCTAAGACAA 58.024 39.130 0.00 0.00 0.00 3.18
407 419 4.564821 CCTCCGTCCCAAAATTCTAAGACA 60.565 45.833 0.00 0.00 0.00 3.41
408 420 3.939592 CCTCCGTCCCAAAATTCTAAGAC 59.060 47.826 0.00 0.00 0.00 3.01
409 421 3.054655 CCCTCCGTCCCAAAATTCTAAGA 60.055 47.826 0.00 0.00 0.00 2.10
410 422 3.054655 TCCCTCCGTCCCAAAATTCTAAG 60.055 47.826 0.00 0.00 0.00 2.18
411 423 2.914278 TCCCTCCGTCCCAAAATTCTAA 59.086 45.455 0.00 0.00 0.00 2.10
412 424 2.504175 CTCCCTCCGTCCCAAAATTCTA 59.496 50.000 0.00 0.00 0.00 2.10
413 425 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
414 426 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
415 427 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
416 428 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
417 429 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
418 430 2.292389 TGTATACTCCCTCCGTCCCAAA 60.292 50.000 4.17 0.00 0.00 3.28
419 431 1.288633 TGTATACTCCCTCCGTCCCAA 59.711 52.381 4.17 0.00 0.00 4.12
420 432 0.928505 TGTATACTCCCTCCGTCCCA 59.071 55.000 4.17 0.00 0.00 4.37
421 433 1.962100 CTTGTATACTCCCTCCGTCCC 59.038 57.143 4.17 0.00 0.00 4.46
422 434 2.664015 ACTTGTATACTCCCTCCGTCC 58.336 52.381 4.17 0.00 0.00 4.79
423 435 3.952967 AGAACTTGTATACTCCCTCCGTC 59.047 47.826 4.17 0.00 0.00 4.79
424 436 3.978610 AGAACTTGTATACTCCCTCCGT 58.021 45.455 4.17 0.00 0.00 4.69
425 437 4.683832 CAAGAACTTGTATACTCCCTCCG 58.316 47.826 4.17 0.00 35.92 4.63
483 495 3.313526 CCTTAAGCGACTATTTGCTGCAT 59.686 43.478 1.84 0.00 42.21 3.96
499 515 6.441093 TGAGCTATTTGCATGTTCCTTAAG 57.559 37.500 0.00 0.00 45.94 1.85
506 522 6.704289 ACACATATGAGCTATTTGCATGTT 57.296 33.333 10.38 0.00 45.94 2.71
508 524 7.641760 TGTAACACATATGAGCTATTTGCATG 58.358 34.615 10.38 0.00 45.94 4.06
519 535 9.546428 TGGTTATCAGAATGTAACACATATGAG 57.454 33.333 10.38 3.79 37.97 2.90
524 540 9.120538 GGTAATGGTTATCAGAATGTAACACAT 57.879 33.333 0.00 0.00 41.31 3.21
525 541 8.103935 TGGTAATGGTTATCAGAATGTAACACA 58.896 33.333 0.00 0.00 35.64 3.72
526 542 8.500753 TGGTAATGGTTATCAGAATGTAACAC 57.499 34.615 0.00 0.00 35.64 3.32
527 543 9.693739 ATTGGTAATGGTTATCAGAATGTAACA 57.306 29.630 0.00 0.00 35.64 2.41
529 545 9.913310 TGATTGGTAATGGTTATCAGAATGTAA 57.087 29.630 0.00 0.00 37.40 2.41
530 546 9.913310 TTGATTGGTAATGGTTATCAGAATGTA 57.087 29.630 0.00 0.00 37.40 2.29
531 547 8.821686 TTGATTGGTAATGGTTATCAGAATGT 57.178 30.769 0.00 0.00 37.40 2.71
532 548 9.123902 TCTTGATTGGTAATGGTTATCAGAATG 57.876 33.333 0.00 0.00 37.54 2.67
533 549 9.347240 CTCTTGATTGGTAATGGTTATCAGAAT 57.653 33.333 0.00 0.00 0.00 2.40
534 550 7.775093 CCTCTTGATTGGTAATGGTTATCAGAA 59.225 37.037 0.00 0.00 0.00 3.02
535 551 7.092444 ACCTCTTGATTGGTAATGGTTATCAGA 60.092 37.037 0.00 0.00 34.36 3.27
536 552 7.012704 CACCTCTTGATTGGTAATGGTTATCAG 59.987 40.741 0.00 0.00 34.79 2.90
537 553 6.828273 CACCTCTTGATTGGTAATGGTTATCA 59.172 38.462 0.00 0.00 34.79 2.15
538 554 6.263168 CCACCTCTTGATTGGTAATGGTTATC 59.737 42.308 0.00 0.00 34.79 1.75
539 555 6.129179 CCACCTCTTGATTGGTAATGGTTAT 58.871 40.000 0.00 0.00 34.79 1.89
540 556 5.014755 ACCACCTCTTGATTGGTAATGGTTA 59.985 40.000 3.14 0.00 42.04 2.85
541 557 4.202673 ACCACCTCTTGATTGGTAATGGTT 60.203 41.667 3.14 0.00 42.04 3.67
542 558 3.333680 ACCACCTCTTGATTGGTAATGGT 59.666 43.478 3.14 0.00 42.04 3.55
543 559 3.968265 ACCACCTCTTGATTGGTAATGG 58.032 45.455 3.14 0.00 42.04 3.16
544 560 5.982890 AAACCACCTCTTGATTGGTAATG 57.017 39.130 4.97 0.00 43.08 1.90
545 561 7.007723 TGTAAAACCACCTCTTGATTGGTAAT 58.992 34.615 4.97 0.00 43.08 1.89
546 562 6.366340 TGTAAAACCACCTCTTGATTGGTAA 58.634 36.000 4.97 0.00 43.08 2.85
547 563 5.942961 TGTAAAACCACCTCTTGATTGGTA 58.057 37.500 4.97 0.00 43.08 3.25
548 564 4.798882 TGTAAAACCACCTCTTGATTGGT 58.201 39.130 0.00 0.00 45.95 3.67
549 565 5.301805 ACTTGTAAAACCACCTCTTGATTGG 59.698 40.000 0.00 0.00 36.39 3.16
550 566 6.391227 ACTTGTAAAACCACCTCTTGATTG 57.609 37.500 0.00 0.00 0.00 2.67
551 567 8.706322 AATACTTGTAAAACCACCTCTTGATT 57.294 30.769 0.00 0.00 0.00 2.57
552 568 8.706322 AAATACTTGTAAAACCACCTCTTGAT 57.294 30.769 0.00 0.00 0.00 2.57
553 569 8.410141 CAAAATACTTGTAAAACCACCTCTTGA 58.590 33.333 0.00 0.00 0.00 3.02
554 570 8.194769 ACAAAATACTTGTAAAACCACCTCTTG 58.805 33.333 0.00 0.00 0.00 3.02
555 571 8.301252 ACAAAATACTTGTAAAACCACCTCTT 57.699 30.769 0.00 0.00 0.00 2.85
556 572 7.891498 ACAAAATACTTGTAAAACCACCTCT 57.109 32.000 0.00 0.00 0.00 3.69
557 573 7.977293 ACAACAAAATACTTGTAAAACCACCTC 59.023 33.333 0.00 0.00 31.50 3.85
558 574 7.842982 ACAACAAAATACTTGTAAAACCACCT 58.157 30.769 0.00 0.00 31.50 4.00
559 575 8.481974 AACAACAAAATACTTGTAAAACCACC 57.518 30.769 0.00 0.00 30.26 4.61
560 576 9.748100 CAAACAACAAAATACTTGTAAAACCAC 57.252 29.630 0.00 0.00 30.26 4.16
561 577 9.490379 ACAAACAACAAAATACTTGTAAAACCA 57.510 25.926 0.00 0.00 30.26 3.67
567 583 9.477484 ACACAAACAAACAACAAAATACTTGTA 57.523 25.926 0.00 0.00 30.26 2.41
568 584 8.371770 ACACAAACAAACAACAAAATACTTGT 57.628 26.923 0.00 0.00 31.76 3.16
569 585 7.954786 GGACACAAACAAACAACAAAATACTTG 59.045 33.333 0.00 0.00 0.00 3.16
570 586 7.875554 AGGACACAAACAAACAACAAAATACTT 59.124 29.630 0.00 0.00 0.00 2.24
571 587 7.382898 AGGACACAAACAAACAACAAAATACT 58.617 30.769 0.00 0.00 0.00 2.12
572 588 7.589574 AGGACACAAACAAACAACAAAATAC 57.410 32.000 0.00 0.00 0.00 1.89
573 589 7.062371 CGAAGGACACAAACAAACAACAAAATA 59.938 33.333 0.00 0.00 0.00 1.40
574 590 6.128688 CGAAGGACACAAACAAACAACAAAAT 60.129 34.615 0.00 0.00 0.00 1.82
575 591 5.175856 CGAAGGACACAAACAAACAACAAAA 59.824 36.000 0.00 0.00 0.00 2.44
576 592 4.681942 CGAAGGACACAAACAAACAACAAA 59.318 37.500 0.00 0.00 0.00 2.83
577 593 4.230657 CGAAGGACACAAACAAACAACAA 58.769 39.130 0.00 0.00 0.00 2.83
581 597 3.340034 AGACGAAGGACACAAACAAACA 58.660 40.909 0.00 0.00 0.00 2.83
589 605 2.546778 GACACAAAGACGAAGGACACA 58.453 47.619 0.00 0.00 0.00 3.72
590 606 1.521423 CGACACAAAGACGAAGGACAC 59.479 52.381 0.00 0.00 37.60 3.67
591 607 1.135527 ACGACACAAAGACGAAGGACA 59.864 47.619 0.00 0.00 38.73 4.02
592 608 1.521423 CACGACACAAAGACGAAGGAC 59.479 52.381 0.00 0.00 38.73 3.85
593 609 1.847818 CACGACACAAAGACGAAGGA 58.152 50.000 0.00 0.00 38.73 3.36
594 610 0.232303 GCACGACACAAAGACGAAGG 59.768 55.000 0.00 0.00 38.73 3.46
595 611 0.111704 CGCACGACACAAAGACGAAG 60.112 55.000 0.00 0.00 38.73 3.79
596 612 0.525882 TCGCACGACACAAAGACGAA 60.526 50.000 0.00 0.00 38.73 3.85
597 613 0.318360 ATCGCACGACACAAAGACGA 60.318 50.000 0.00 0.00 38.73 4.20
598 614 0.179275 CATCGCACGACACAAAGACG 60.179 55.000 0.00 0.00 41.15 4.18
599 615 0.451135 GCATCGCACGACACAAAGAC 60.451 55.000 0.00 0.00 0.00 3.01
600 616 0.878086 TGCATCGCACGACACAAAGA 60.878 50.000 0.00 0.00 31.71 2.52
601 617 0.041400 TTGCATCGCACGACACAAAG 60.041 50.000 7.00 0.00 38.71 2.77
602 618 0.378610 TTTGCATCGCACGACACAAA 59.621 45.000 14.65 14.65 38.71 2.83
603 619 0.590682 ATTTGCATCGCACGACACAA 59.409 45.000 0.00 0.00 38.71 3.33
604 620 0.110283 CATTTGCATCGCACGACACA 60.110 50.000 0.00 0.00 38.71 3.72
605 621 0.794229 CCATTTGCATCGCACGACAC 60.794 55.000 0.00 0.00 38.71 3.67
606 622 1.501292 CCATTTGCATCGCACGACA 59.499 52.632 0.00 0.00 38.71 4.35
607 623 1.226379 CCCATTTGCATCGCACGAC 60.226 57.895 0.00 0.00 38.71 4.34
608 624 1.240641 AACCCATTTGCATCGCACGA 61.241 50.000 0.00 0.00 38.71 4.35
609 625 1.072116 CAACCCATTTGCATCGCACG 61.072 55.000 0.00 0.00 38.71 5.34
610 626 0.038343 ACAACCCATTTGCATCGCAC 60.038 50.000 0.00 0.00 38.71 5.34
611 627 0.678395 AACAACCCATTTGCATCGCA 59.322 45.000 0.00 0.00 39.01 5.10
612 628 1.794512 AAACAACCCATTTGCATCGC 58.205 45.000 0.00 0.00 39.01 4.58
613 629 3.129871 ACAAAACAACCCATTTGCATCG 58.870 40.909 0.00 0.00 39.55 3.84
614 630 5.988561 TCTAACAAAACAACCCATTTGCATC 59.011 36.000 0.00 0.00 39.55 3.91
615 631 5.757808 GTCTAACAAAACAACCCATTTGCAT 59.242 36.000 0.00 0.00 39.55 3.96
616 632 5.105146 AGTCTAACAAAACAACCCATTTGCA 60.105 36.000 0.00 0.00 39.55 4.08
617 633 5.356426 AGTCTAACAAAACAACCCATTTGC 58.644 37.500 0.00 0.00 39.55 3.68
618 634 7.222611 CAGAAGTCTAACAAAACAACCCATTTG 59.777 37.037 0.00 0.00 41.24 2.32
619 635 7.093509 ACAGAAGTCTAACAAAACAACCCATTT 60.094 33.333 0.00 0.00 0.00 2.32
620 636 6.379988 ACAGAAGTCTAACAAAACAACCCATT 59.620 34.615 0.00 0.00 0.00 3.16
621 637 5.891551 ACAGAAGTCTAACAAAACAACCCAT 59.108 36.000 0.00 0.00 0.00 4.00
622 638 5.124776 CACAGAAGTCTAACAAAACAACCCA 59.875 40.000 0.00 0.00 0.00 4.51
623 639 5.578776 CACAGAAGTCTAACAAAACAACCC 58.421 41.667 0.00 0.00 0.00 4.11
624 640 5.034797 GCACAGAAGTCTAACAAAACAACC 58.965 41.667 0.00 0.00 0.00 3.77
625 641 5.636837 TGCACAGAAGTCTAACAAAACAAC 58.363 37.500 0.00 0.00 0.00 3.32
626 642 5.888691 TGCACAGAAGTCTAACAAAACAA 57.111 34.783 0.00 0.00 0.00 2.83
627 643 5.588246 TGATGCACAGAAGTCTAACAAAACA 59.412 36.000 0.00 0.00 0.00 2.83
628 644 6.060028 TGATGCACAGAAGTCTAACAAAAC 57.940 37.500 0.00 0.00 0.00 2.43
629 645 6.691754 TTGATGCACAGAAGTCTAACAAAA 57.308 33.333 0.00 0.00 0.00 2.44
630 646 6.238731 CCTTTGATGCACAGAAGTCTAACAAA 60.239 38.462 0.00 0.00 0.00 2.83
631 647 5.239306 CCTTTGATGCACAGAAGTCTAACAA 59.761 40.000 0.00 0.00 0.00 2.83
632 648 4.756642 CCTTTGATGCACAGAAGTCTAACA 59.243 41.667 0.00 0.00 0.00 2.41
633 649 4.997395 TCCTTTGATGCACAGAAGTCTAAC 59.003 41.667 0.00 0.00 0.00 2.34
634 650 4.997395 GTCCTTTGATGCACAGAAGTCTAA 59.003 41.667 0.00 0.00 0.00 2.10
635 651 4.040339 TGTCCTTTGATGCACAGAAGTCTA 59.960 41.667 0.00 0.00 0.00 2.59
636 652 3.181451 TGTCCTTTGATGCACAGAAGTCT 60.181 43.478 0.00 0.00 0.00 3.24
637 653 3.141398 TGTCCTTTGATGCACAGAAGTC 58.859 45.455 0.00 0.00 0.00 3.01
638 654 3.213206 TGTCCTTTGATGCACAGAAGT 57.787 42.857 0.00 0.00 0.00 3.01
639 655 4.482386 CAATGTCCTTTGATGCACAGAAG 58.518 43.478 0.00 0.00 0.00 2.85
640 656 3.256383 CCAATGTCCTTTGATGCACAGAA 59.744 43.478 0.00 0.00 0.00 3.02
641 657 2.821378 CCAATGTCCTTTGATGCACAGA 59.179 45.455 0.00 0.00 0.00 3.41
642 658 2.559668 ACCAATGTCCTTTGATGCACAG 59.440 45.455 0.00 0.00 0.00 3.66
643 659 2.296752 CACCAATGTCCTTTGATGCACA 59.703 45.455 0.00 0.00 0.00 4.57
644 660 2.927871 GCACCAATGTCCTTTGATGCAC 60.928 50.000 7.23 0.00 44.18 4.57
645 661 1.273048 GCACCAATGTCCTTTGATGCA 59.727 47.619 7.23 0.00 44.18 3.96
646 662 1.273048 TGCACCAATGTCCTTTGATGC 59.727 47.619 5.53 5.53 44.86 3.91
647 663 2.821378 TCTGCACCAATGTCCTTTGATG 59.179 45.455 0.00 0.00 0.00 3.07
648 664 3.087031 CTCTGCACCAATGTCCTTTGAT 58.913 45.455 0.00 0.00 0.00 2.57
649 665 2.106338 TCTCTGCACCAATGTCCTTTGA 59.894 45.455 0.00 0.00 0.00 2.69
650 666 2.227388 GTCTCTGCACCAATGTCCTTTG 59.773 50.000 0.00 0.00 0.00 2.77
651 667 2.508526 GTCTCTGCACCAATGTCCTTT 58.491 47.619 0.00 0.00 0.00 3.11
652 668 1.609061 CGTCTCTGCACCAATGTCCTT 60.609 52.381 0.00 0.00 0.00 3.36
653 669 0.036952 CGTCTCTGCACCAATGTCCT 60.037 55.000 0.00 0.00 0.00 3.85
654 670 1.021390 CCGTCTCTGCACCAATGTCC 61.021 60.000 0.00 0.00 0.00 4.02
655 671 0.037326 TCCGTCTCTGCACCAATGTC 60.037 55.000 0.00 0.00 0.00 3.06
656 672 0.396435 TTCCGTCTCTGCACCAATGT 59.604 50.000 0.00 0.00 0.00 2.71
657 673 1.742761 ATTCCGTCTCTGCACCAATG 58.257 50.000 0.00 0.00 0.00 2.82
658 674 3.197766 TCTTATTCCGTCTCTGCACCAAT 59.802 43.478 0.00 0.00 0.00 3.16
659 675 2.565391 TCTTATTCCGTCTCTGCACCAA 59.435 45.455 0.00 0.00 0.00 3.67
660 676 2.094182 GTCTTATTCCGTCTCTGCACCA 60.094 50.000 0.00 0.00 0.00 4.17
661 677 2.166664 AGTCTTATTCCGTCTCTGCACC 59.833 50.000 0.00 0.00 0.00 5.01
662 678 3.512033 AGTCTTATTCCGTCTCTGCAC 57.488 47.619 0.00 0.00 0.00 4.57
663 679 4.537135 AAAGTCTTATTCCGTCTCTGCA 57.463 40.909 0.00 0.00 0.00 4.41
664 680 4.929808 TCAAAAGTCTTATTCCGTCTCTGC 59.070 41.667 0.00 0.00 0.00 4.26
665 681 8.879342 ATATCAAAAGTCTTATTCCGTCTCTG 57.121 34.615 0.00 0.00 0.00 3.35
689 705 9.712305 GTAGCCAACACATTCAGAACTATATAT 57.288 33.333 0.00 0.00 0.00 0.86
690 706 8.924303 AGTAGCCAACACATTCAGAACTATATA 58.076 33.333 0.00 0.00 0.00 0.86
691 707 7.712639 CAGTAGCCAACACATTCAGAACTATAT 59.287 37.037 0.00 0.00 0.00 0.86
692 708 7.041721 CAGTAGCCAACACATTCAGAACTATA 58.958 38.462 0.00 0.00 0.00 1.31
693 709 5.877012 CAGTAGCCAACACATTCAGAACTAT 59.123 40.000 0.00 0.00 0.00 2.12
694 710 5.011635 TCAGTAGCCAACACATTCAGAACTA 59.988 40.000 0.00 0.00 0.00 2.24
695 711 4.067896 CAGTAGCCAACACATTCAGAACT 58.932 43.478 0.00 0.00 0.00 3.01
696 712 4.065088 TCAGTAGCCAACACATTCAGAAC 58.935 43.478 0.00 0.00 0.00 3.01
697 713 4.350368 TCAGTAGCCAACACATTCAGAA 57.650 40.909 0.00 0.00 0.00 3.02
698 714 4.350368 TTCAGTAGCCAACACATTCAGA 57.650 40.909 0.00 0.00 0.00 3.27
699 715 5.877012 AGTATTCAGTAGCCAACACATTCAG 59.123 40.000 0.00 0.00 0.00 3.02
700 716 5.804639 AGTATTCAGTAGCCAACACATTCA 58.195 37.500 0.00 0.00 0.00 2.57
701 717 6.109359 AGAGTATTCAGTAGCCAACACATTC 58.891 40.000 0.00 0.00 0.00 2.67
702 718 6.054860 AGAGTATTCAGTAGCCAACACATT 57.945 37.500 0.00 0.00 0.00 2.71
703 719 5.683876 AGAGTATTCAGTAGCCAACACAT 57.316 39.130 0.00 0.00 0.00 3.21
737 753 9.444600 GATACCATGTTAAACTAAAGGAACAGA 57.555 33.333 0.00 0.00 35.41 3.41
742 758 8.736244 GCAAAGATACCATGTTAAACTAAAGGA 58.264 33.333 0.00 0.00 0.00 3.36
770 792 2.102252 GCCATGATAATCCCCGCAAAAA 59.898 45.455 0.00 0.00 0.00 1.94
771 793 1.686052 GCCATGATAATCCCCGCAAAA 59.314 47.619 0.00 0.00 0.00 2.44
772 794 1.327303 GCCATGATAATCCCCGCAAA 58.673 50.000 0.00 0.00 0.00 3.68
773 795 0.184692 TGCCATGATAATCCCCGCAA 59.815 50.000 0.00 0.00 0.00 4.85
774 796 0.405198 ATGCCATGATAATCCCCGCA 59.595 50.000 0.00 0.00 0.00 5.69
775 797 2.418368 TATGCCATGATAATCCCCGC 57.582 50.000 0.00 0.00 0.00 6.13
776 798 4.949238 TGAAATATGCCATGATAATCCCCG 59.051 41.667 0.00 0.00 0.00 5.73
777 799 5.954150 ACTGAAATATGCCATGATAATCCCC 59.046 40.000 0.00 0.00 0.00 4.81
778 800 6.626623 GCACTGAAATATGCCATGATAATCCC 60.627 42.308 0.00 0.00 35.73 3.85
779 801 6.152323 AGCACTGAAATATGCCATGATAATCC 59.848 38.462 0.00 0.00 43.12 3.01
780 802 7.154435 AGCACTGAAATATGCCATGATAATC 57.846 36.000 0.00 0.00 43.12 1.75
781 803 7.231925 TCAAGCACTGAAATATGCCATGATAAT 59.768 33.333 0.00 0.00 43.12 1.28
782 804 6.546772 TCAAGCACTGAAATATGCCATGATAA 59.453 34.615 0.00 0.00 43.12 1.75
783 805 6.063404 TCAAGCACTGAAATATGCCATGATA 58.937 36.000 0.00 0.00 43.12 2.15
784 806 4.891168 TCAAGCACTGAAATATGCCATGAT 59.109 37.500 0.00 0.00 43.12 2.45
785 807 4.271661 TCAAGCACTGAAATATGCCATGA 58.728 39.130 0.00 0.00 43.12 3.07
786 808 4.642445 TCAAGCACTGAAATATGCCATG 57.358 40.909 0.00 0.00 43.12 3.66
790 812 3.181484 TGCCATCAAGCACTGAAATATGC 60.181 43.478 0.00 0.00 42.39 3.14
805 827 7.185318 AGGAAATGAAAATTACATGCCATCA 57.815 32.000 0.00 0.00 0.00 3.07
808 830 7.716799 ACTAGGAAATGAAAATTACATGCCA 57.283 32.000 0.00 0.00 0.00 4.92
809 831 9.120538 TCTACTAGGAAATGAAAATTACATGCC 57.879 33.333 0.00 4.93 0.00 4.40
864 889 4.648762 CACATACAGAGATTCAGACCCTCT 59.351 45.833 0.00 0.00 37.74 3.69
882 907 7.890515 TCCAGTTTGCAAAAATATCACACATA 58.109 30.769 14.67 0.00 0.00 2.29
883 908 6.757237 TCCAGTTTGCAAAAATATCACACAT 58.243 32.000 14.67 0.00 0.00 3.21
884 909 6.154203 TCCAGTTTGCAAAAATATCACACA 57.846 33.333 14.67 0.00 0.00 3.72
885 910 7.092716 AGATCCAGTTTGCAAAAATATCACAC 58.907 34.615 14.67 0.00 0.00 3.82
893 918 8.619546 CCAAAATAAAGATCCAGTTTGCAAAAA 58.380 29.630 14.67 0.23 0.00 1.94
899 924 6.991938 TGTCCCAAAATAAAGATCCAGTTTG 58.008 36.000 5.84 5.84 0.00 2.93
900 925 7.454380 TGATGTCCCAAAATAAAGATCCAGTTT 59.546 33.333 0.00 0.00 0.00 2.66
923 948 6.406400 GCTCTATTGTTCAGTAGTGGAGTGAT 60.406 42.308 0.00 0.00 37.35 3.06
958 990 6.198237 AGAAGAAAAGGCTATATCCTGCAT 57.802 37.500 0.00 0.00 36.38 3.96
982 1036 2.647299 ACATCTTGATACACCCAACCCA 59.353 45.455 0.00 0.00 0.00 4.51
983 1037 3.054361 AGACATCTTGATACACCCAACCC 60.054 47.826 0.00 0.00 0.00 4.11
984 1038 3.941483 CAGACATCTTGATACACCCAACC 59.059 47.826 0.00 0.00 0.00 3.77
985 1039 3.941483 CCAGACATCTTGATACACCCAAC 59.059 47.826 0.00 0.00 0.00 3.77
986 1040 3.843619 TCCAGACATCTTGATACACCCAA 59.156 43.478 0.00 0.00 0.00 4.12
1025 1079 0.742990 CGCCTTTATTCGGTCTGCCA 60.743 55.000 0.00 0.00 34.09 4.92
1051 1105 5.766670 TGCTCAATCCCTTAGCATTTGATAG 59.233 40.000 0.00 0.00 41.15 2.08
1173 1227 3.389329 TCAGATACATCTTCCTCTTGGCC 59.611 47.826 0.00 0.00 34.22 5.36
1232 1286 3.119955 GGAAGAAGTTGGTACGGCATTTC 60.120 47.826 0.00 0.00 0.00 2.17
1255 1309 0.895100 TTCTGACATTGGCCACCAGC 60.895 55.000 3.88 0.00 42.60 4.85
1454 1511 3.402628 TCTCCTTCTGTTTTTCTCCCG 57.597 47.619 0.00 0.00 0.00 5.14
1456 1513 5.468409 CAGACTTCTCCTTCTGTTTTTCTCC 59.532 44.000 0.00 0.00 35.48 3.71
1464 1521 4.380843 TCTCTCAGACTTCTCCTTCTGT 57.619 45.455 0.00 0.00 40.25 3.41
1484 1544 6.854091 TTCTCTTACTCTTTACCTCCCTTC 57.146 41.667 0.00 0.00 0.00 3.46
1489 1549 7.813627 ACGATGTTTTCTCTTACTCTTTACCTC 59.186 37.037 0.00 0.00 0.00 3.85
1493 1553 7.152645 AGCACGATGTTTTCTCTTACTCTTTA 58.847 34.615 0.00 0.00 0.00 1.85
1500 1572 3.678072 CCGAAGCACGATGTTTTCTCTTA 59.322 43.478 4.96 0.00 45.77 2.10
1546 1618 3.452264 TCAGACCCACTCGATGATGATTT 59.548 43.478 0.00 0.00 0.00 2.17
1555 1627 3.367646 AGAATACTCAGACCCACTCGA 57.632 47.619 0.00 0.00 0.00 4.04
1563 1635 4.564769 CCGCTTTCAGAAGAATACTCAGAC 59.435 45.833 0.00 0.00 34.71 3.51
1587 1659 4.530553 TCCAATGGACTGTAGCTTGAACTA 59.469 41.667 0.00 0.00 0.00 2.24
1603 1675 1.620819 CCTATCCTCCGAGTCCAATGG 59.379 57.143 0.00 0.00 0.00 3.16
1605 1677 3.235200 CTTCCTATCCTCCGAGTCCAAT 58.765 50.000 0.00 0.00 0.00 3.16
1638 1713 2.412065 CCTTCTTTTCTTCTGCTTCGCG 60.412 50.000 0.00 0.00 0.00 5.87
1653 1728 1.375326 GTCCCTTCGGTGCCTTCTT 59.625 57.895 0.00 0.00 0.00 2.52
1686 1761 4.901849 TCAGATTTGGATAACGAGGAGGAT 59.098 41.667 0.00 0.00 0.00 3.24
1696 1774 6.213397 TCAGGTTCAGACTCAGATTTGGATAA 59.787 38.462 0.00 0.00 0.00 1.75
1697 1775 5.721480 TCAGGTTCAGACTCAGATTTGGATA 59.279 40.000 0.00 0.00 0.00 2.59
1701 1779 6.092396 CAGAATCAGGTTCAGACTCAGATTTG 59.908 42.308 0.00 0.00 39.39 2.32
1702 1780 6.013898 TCAGAATCAGGTTCAGACTCAGATTT 60.014 38.462 0.00 0.00 39.39 2.17
1729 1807 4.888326 TCCTTTTGTTGCTGCCATTATT 57.112 36.364 0.00 0.00 0.00 1.40
1730 1808 4.527816 TCTTCCTTTTGTTGCTGCCATTAT 59.472 37.500 0.00 0.00 0.00 1.28
1731 1809 3.894427 TCTTCCTTTTGTTGCTGCCATTA 59.106 39.130 0.00 0.00 0.00 1.90
1734 1812 1.682854 CTCTTCCTTTTGTTGCTGCCA 59.317 47.619 0.00 0.00 0.00 4.92
1741 1819 3.243201 CGCTTCTTGCTCTTCCTTTTGTT 60.243 43.478 0.00 0.00 40.11 2.83
1742 1820 2.291741 CGCTTCTTGCTCTTCCTTTTGT 59.708 45.455 0.00 0.00 40.11 2.83
1743 1821 2.291741 ACGCTTCTTGCTCTTCCTTTTG 59.708 45.455 0.00 0.00 40.11 2.44
1746 1824 1.517242 CACGCTTCTTGCTCTTCCTT 58.483 50.000 0.00 0.00 40.11 3.36
1747 1825 0.321122 CCACGCTTCTTGCTCTTCCT 60.321 55.000 0.00 0.00 40.11 3.36
1748 1826 0.603975 ACCACGCTTCTTGCTCTTCC 60.604 55.000 0.00 0.00 40.11 3.46
1772 1850 3.549150 CTCTTCAAGCTCGGCGCG 61.549 66.667 0.00 0.00 45.59 6.86
1826 1924 7.716612 TCCATTTTCTTCTCTTTTTGAACTCC 58.283 34.615 0.00 0.00 0.00 3.85
1974 2536 7.658525 TGGGCAGAACATGTTGATAAATATT 57.341 32.000 17.58 0.00 0.00 1.28
2030 2592 6.762661 AGCTGCATTTTCTTTCTTTTTGCTTA 59.237 30.769 1.02 0.00 0.00 3.09
2039 2601 6.985117 TGTTTCATAGCTGCATTTTCTTTCT 58.015 32.000 1.02 0.00 0.00 2.52
2144 2709 0.393267 CGGGTAGATTTTTGGGGCGA 60.393 55.000 0.00 0.00 0.00 5.54
2250 2815 3.329520 ACTTTTAGTGCCATGTGGACCTA 59.670 43.478 2.55 0.00 37.39 3.08
2293 2858 1.005924 GGGTCCCACATCCAACTTGAT 59.994 52.381 1.78 0.00 0.00 2.57
2364 2936 2.663196 GGCCCTCTACGTGCAAGT 59.337 61.111 10.83 10.83 0.00 3.16
2391 3009 3.418913 CGTTGATGTTCGCCGGCA 61.419 61.111 28.98 11.20 0.00 5.69
2403 3021 0.756294 TCAGCTCCAAGAACCGTTGA 59.244 50.000 0.00 0.00 0.00 3.18
2568 3186 1.381327 CTGTCCCCCTCGCTTCCTA 60.381 63.158 0.00 0.00 0.00 2.94
2589 3207 1.071471 CAGCCAAGGAAGACCGTGT 59.929 57.895 0.00 0.00 42.56 4.49
2606 3224 1.522092 CTGCTGTCGGCCTTATCCA 59.478 57.895 0.00 0.00 40.92 3.41
2661 3281 0.107508 ACGCTGCAGCAATAGATGGT 60.108 50.000 36.03 20.90 42.21 3.55
2686 3306 3.563224 TGGCCACAGCTCAGCAGT 61.563 61.111 0.00 0.00 39.73 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.