Multiple sequence alignment - TraesCS5A01G020900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G020900 chr5A 100.000 4542 0 0 1 4542 17225224 17220683 0.000000e+00 8388.0
1 TraesCS5A01G020900 chr5D 92.505 2068 105 24 2498 4542 23297820 23295780 0.000000e+00 2915.0
2 TraesCS5A01G020900 chr5D 82.811 1309 89 61 783 2021 23299627 23298385 0.000000e+00 1046.0
3 TraesCS5A01G020900 chr5D 89.022 501 33 10 2022 2501 23298352 23297853 6.500000e-168 601.0
4 TraesCS5A01G020900 chr5D 82.364 516 57 15 178 690 23300117 23299633 7.030000e-113 418.0
5 TraesCS5A01G020900 chr5D 80.454 573 57 31 1087 1645 555450127 555450658 1.980000e-103 387.0
6 TraesCS5A01G020900 chr5D 83.333 186 12 7 3 186 23342468 23342300 2.190000e-33 154.0
7 TraesCS5A01G020900 chr5D 82.927 164 18 6 999 1152 558187867 558187704 6.130000e-29 139.0
8 TraesCS5A01G020900 chr5D 81.988 161 23 3 4366 4526 23293821 23293667 1.030000e-26 132.0
9 TraesCS5A01G020900 chr5D 96.364 55 2 0 4298 4352 23241166 23241112 1.740000e-14 91.6
10 TraesCS5A01G020900 chr5B 83.463 1802 108 99 794 2502 17547820 17546116 0.000000e+00 1502.0
11 TraesCS5A01G020900 chr5B 81.270 929 79 42 3382 4304 17545198 17544359 0.000000e+00 664.0
12 TraesCS5A01G020900 chr5B 96.144 389 12 1 2498 2886 17546084 17545699 2.310000e-177 632.0
13 TraesCS5A01G020900 chr5B 95.568 361 13 1 2883 3243 17545619 17545262 3.940000e-160 575.0
14 TraesCS5A01G020900 chr5B 85.938 448 39 11 4103 4542 17467516 17467085 1.490000e-124 457.0
15 TraesCS5A01G020900 chr5B 88.462 208 18 3 4335 4542 17544361 17544160 3.510000e-61 246.0
16 TraesCS5A01G020900 chr5B 84.472 161 16 5 4366 4526 17464549 17464398 2.830000e-32 150.0
17 TraesCS5A01G020900 chr1B 86.011 722 47 20 1010 1681 654382528 654383245 0.000000e+00 725.0
18 TraesCS5A01G020900 chr7B 84.990 493 34 16 1226 1681 703817599 703817110 8.900000e-127 464.0
19 TraesCS5A01G020900 chr7B 85.498 462 27 15 1255 1679 121028694 121028236 3.220000e-121 446.0
20 TraesCS5A01G020900 chr7B 78.322 429 56 26 1087 1503 78676376 78676779 4.540000e-60 243.0
21 TraesCS5A01G020900 chr4D 84.390 410 46 11 1035 1433 400270851 400271253 1.980000e-103 387.0
22 TraesCS5A01G020900 chr2D 80.454 573 57 33 1087 1645 197868960 197868429 1.980000e-103 387.0
23 TraesCS5A01G020900 chr2B 82.719 434 34 27 1087 1503 83584166 83584575 9.350000e-92 348.0
24 TraesCS5A01G020900 chr2B 85.583 326 32 8 999 1312 759162487 759162809 1.220000e-85 327.0
25 TraesCS5A01G020900 chr2B 82.948 346 32 15 1154 1493 322228914 322229238 2.070000e-73 287.0
26 TraesCS5A01G020900 chr2B 89.041 73 7 1 1561 1632 83584613 83584685 6.260000e-14 89.8
27 TraesCS5A01G020900 chr6B 88.087 277 31 2 2197 2472 29785245 29784970 1.220000e-85 327.0
28 TraesCS5A01G020900 chr7D 84.877 324 34 9 999 1315 15681380 15681065 3.410000e-81 313.0
29 TraesCS5A01G020900 chr7A 83.481 339 29 15 1161 1493 35723428 35723745 1.600000e-74 291.0
30 TraesCS5A01G020900 chr3A 84.416 308 27 15 1192 1493 618280623 618280915 2.670000e-72 283.0
31 TraesCS5A01G020900 chr3D 86.066 244 22 8 999 1230 612659865 612660108 7.540000e-63 252.0
32 TraesCS5A01G020900 chrUn 92.571 175 12 1 4368 4542 305930098 305929925 2.710000e-62 250.0
33 TraesCS5A01G020900 chrUn 84.472 161 16 5 4366 4526 305927389 305927238 2.830000e-32 150.0
34 TraesCS5A01G020900 chr1A 81.288 326 44 11 999 1315 173787809 173787492 9.760000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G020900 chr5A 17220683 17225224 4541 True 8388.0 8388 100.0000 1 4542 1 chr5A.!!$R1 4541
1 TraesCS5A01G020900 chr5D 23293667 23300117 6450 True 1022.4 2915 85.7380 178 4542 5 chr5D.!!$R4 4364
2 TraesCS5A01G020900 chr5D 555450127 555450658 531 False 387.0 387 80.4540 1087 1645 1 chr5D.!!$F1 558
3 TraesCS5A01G020900 chr5B 17544160 17547820 3660 True 723.8 1502 88.9814 794 4542 5 chr5B.!!$R2 3748
4 TraesCS5A01G020900 chr5B 17464398 17467516 3118 True 303.5 457 85.2050 4103 4542 2 chr5B.!!$R1 439
5 TraesCS5A01G020900 chr1B 654382528 654383245 717 False 725.0 725 86.0110 1010 1681 1 chr1B.!!$F1 671
6 TraesCS5A01G020900 chr2D 197868429 197868960 531 True 387.0 387 80.4540 1087 1645 1 chr2D.!!$R1 558
7 TraesCS5A01G020900 chr2B 83584166 83584685 519 False 218.9 348 85.8800 1087 1632 2 chr2B.!!$F3 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.032813 CAAAGGACCCAGCCATCCAT 60.033 55.0 0.0 0.0 37.47 3.41 F
729 732 0.034863 TCCAGGGTAAAATGGCCGTC 60.035 55.0 0.0 0.0 36.47 4.79 F
742 745 0.108851 GGCCGTCGCATTTGGAATTT 60.109 50.0 0.0 0.0 36.38 1.82 F
1605 1710 0.179089 CTGCTCCAGAATCCTCACGG 60.179 60.0 0.0 0.0 32.44 4.94 F
1836 1946 0.392998 CGGGGATTGAGAACCACTGG 60.393 60.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 1981 0.035439 ACCCGACCAAACATGCCTAG 60.035 55.000 0.0 0.0 0.0 3.02 R
1872 1982 0.402504 AACCCGACCAAACATGCCTA 59.597 50.000 0.0 0.0 0.0 3.93 R
1886 2016 1.066215 TCTCCACATCATGTCAACCCG 60.066 52.381 0.0 0.0 0.0 5.28 R
3472 3780 1.669760 CTTCGCCTTGCCCACGTAA 60.670 57.895 0.0 0.0 0.0 3.18 R
3674 3982 2.428171 CCCTTGACCTAAATACCGACGA 59.572 50.000 0.0 0.0 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.992063 CATCTGACAACCTTAGCTTGTATT 57.008 37.500 0.00 0.00 31.83 1.89
24 25 7.383102 CATCTGACAACCTTAGCTTGTATTT 57.617 36.000 0.00 0.00 31.83 1.40
25 26 7.820648 CATCTGACAACCTTAGCTTGTATTTT 58.179 34.615 0.00 0.00 31.83 1.82
26 27 7.817418 TCTGACAACCTTAGCTTGTATTTTT 57.183 32.000 0.00 0.00 31.83 1.94
27 28 7.648142 TCTGACAACCTTAGCTTGTATTTTTG 58.352 34.615 0.00 0.00 31.83 2.44
28 29 6.744112 TGACAACCTTAGCTTGTATTTTTGG 58.256 36.000 0.00 0.00 31.83 3.28
29 30 6.547880 TGACAACCTTAGCTTGTATTTTTGGA 59.452 34.615 0.00 0.00 31.83 3.53
30 31 7.232534 TGACAACCTTAGCTTGTATTTTTGGAT 59.767 33.333 0.00 0.00 31.83 3.41
31 32 7.962441 ACAACCTTAGCTTGTATTTTTGGATT 58.038 30.769 0.00 0.00 29.81 3.01
32 33 8.428852 ACAACCTTAGCTTGTATTTTTGGATTT 58.571 29.630 0.00 0.00 29.81 2.17
33 34 9.271828 CAACCTTAGCTTGTATTTTTGGATTTT 57.728 29.630 0.00 0.00 0.00 1.82
34 35 9.845740 AACCTTAGCTTGTATTTTTGGATTTTT 57.154 25.926 0.00 0.00 0.00 1.94
35 36 9.489084 ACCTTAGCTTGTATTTTTGGATTTTTC 57.511 29.630 0.00 0.00 0.00 2.29
36 37 9.710900 CCTTAGCTTGTATTTTTGGATTTTTCT 57.289 29.630 0.00 0.00 0.00 2.52
48 49 9.771534 TTTTTGGATTTTTCTAACAATGGTAGG 57.228 29.630 5.38 0.00 0.00 3.18
49 50 7.475137 TTGGATTTTTCTAACAATGGTAGGG 57.525 36.000 5.38 0.00 0.00 3.53
50 51 6.557568 TGGATTTTTCTAACAATGGTAGGGT 58.442 36.000 5.38 0.00 0.00 4.34
51 52 6.661805 TGGATTTTTCTAACAATGGTAGGGTC 59.338 38.462 5.38 0.00 0.00 4.46
52 53 6.661805 GGATTTTTCTAACAATGGTAGGGTCA 59.338 38.462 5.38 0.00 0.00 4.02
53 54 6.887626 TTTTTCTAACAATGGTAGGGTCAC 57.112 37.500 5.38 0.00 0.00 3.67
54 55 5.570205 TTTCTAACAATGGTAGGGTCACA 57.430 39.130 5.38 0.00 0.00 3.58
55 56 5.570205 TTCTAACAATGGTAGGGTCACAA 57.430 39.130 5.38 0.00 0.00 3.33
56 57 5.570205 TCTAACAATGGTAGGGTCACAAA 57.430 39.130 5.38 0.00 0.00 2.83
57 58 5.556915 TCTAACAATGGTAGGGTCACAAAG 58.443 41.667 5.38 0.00 0.00 2.77
58 59 3.154827 ACAATGGTAGGGTCACAAAGG 57.845 47.619 0.00 0.00 0.00 3.11
59 60 2.714250 ACAATGGTAGGGTCACAAAGGA 59.286 45.455 0.00 0.00 0.00 3.36
60 61 3.081804 CAATGGTAGGGTCACAAAGGAC 58.918 50.000 0.00 0.00 37.06 3.85
66 67 4.081050 GTCACAAAGGACCCAGCC 57.919 61.111 0.00 0.00 0.00 4.85
67 68 1.150536 GTCACAAAGGACCCAGCCA 59.849 57.895 0.00 0.00 0.00 4.75
68 69 0.251341 GTCACAAAGGACCCAGCCAT 60.251 55.000 0.00 0.00 0.00 4.40
69 70 0.038166 TCACAAAGGACCCAGCCATC 59.962 55.000 0.00 0.00 0.00 3.51
70 71 0.967380 CACAAAGGACCCAGCCATCC 60.967 60.000 0.00 0.00 34.98 3.51
71 72 1.383799 CAAAGGACCCAGCCATCCA 59.616 57.895 0.00 0.00 37.47 3.41
72 73 0.032813 CAAAGGACCCAGCCATCCAT 60.033 55.000 0.00 0.00 37.47 3.41
73 74 0.712380 AAAGGACCCAGCCATCCATT 59.288 50.000 0.00 0.00 37.47 3.16
74 75 0.032813 AAGGACCCAGCCATCCATTG 60.033 55.000 0.00 0.00 37.47 2.82
75 76 1.217057 AGGACCCAGCCATCCATTGT 61.217 55.000 0.00 0.00 37.47 2.71
76 77 0.550914 GGACCCAGCCATCCATTGTA 59.449 55.000 0.00 0.00 34.87 2.41
77 78 1.064017 GGACCCAGCCATCCATTGTAA 60.064 52.381 0.00 0.00 34.87 2.41
78 79 2.024414 GACCCAGCCATCCATTGTAAC 58.976 52.381 0.00 0.00 0.00 2.50
79 80 1.024271 CCCAGCCATCCATTGTAACG 58.976 55.000 0.00 0.00 0.00 3.18
80 81 1.408127 CCCAGCCATCCATTGTAACGA 60.408 52.381 0.00 0.00 0.00 3.85
81 82 2.364632 CCAGCCATCCATTGTAACGAA 58.635 47.619 0.00 0.00 0.00 3.85
82 83 2.951642 CCAGCCATCCATTGTAACGAAT 59.048 45.455 0.00 0.00 0.00 3.34
83 84 4.133820 CCAGCCATCCATTGTAACGAATA 58.866 43.478 0.00 0.00 0.00 1.75
84 85 4.761739 CCAGCCATCCATTGTAACGAATAT 59.238 41.667 0.00 0.00 0.00 1.28
85 86 5.106555 CCAGCCATCCATTGTAACGAATATC 60.107 44.000 0.00 0.00 0.00 1.63
86 87 5.003804 AGCCATCCATTGTAACGAATATCC 58.996 41.667 0.00 0.00 0.00 2.59
87 88 4.142902 GCCATCCATTGTAACGAATATCCG 60.143 45.833 0.00 0.00 0.00 4.18
88 89 5.234752 CCATCCATTGTAACGAATATCCGA 58.765 41.667 0.00 0.00 0.00 4.55
89 90 5.699001 CCATCCATTGTAACGAATATCCGAA 59.301 40.000 0.00 0.00 0.00 4.30
90 91 6.128553 CCATCCATTGTAACGAATATCCGAAG 60.129 42.308 0.00 0.00 0.00 3.79
91 92 6.151663 TCCATTGTAACGAATATCCGAAGA 57.848 37.500 0.00 0.00 0.00 2.87
92 93 6.213677 TCCATTGTAACGAATATCCGAAGAG 58.786 40.000 0.00 0.00 0.00 2.85
93 94 5.983720 CCATTGTAACGAATATCCGAAGAGT 59.016 40.000 0.00 0.00 0.00 3.24
94 95 6.144080 CCATTGTAACGAATATCCGAAGAGTC 59.856 42.308 0.00 0.00 0.00 3.36
95 96 5.179045 TGTAACGAATATCCGAAGAGTCC 57.821 43.478 0.00 0.00 0.00 3.85
96 97 4.641541 TGTAACGAATATCCGAAGAGTCCA 59.358 41.667 0.00 0.00 0.00 4.02
97 98 4.939052 AACGAATATCCGAAGAGTCCAT 57.061 40.909 0.00 0.00 0.00 3.41
98 99 4.244425 ACGAATATCCGAAGAGTCCATG 57.756 45.455 0.00 0.00 0.00 3.66
99 100 3.889538 ACGAATATCCGAAGAGTCCATGA 59.110 43.478 0.00 0.00 0.00 3.07
100 101 4.022762 ACGAATATCCGAAGAGTCCATGAG 60.023 45.833 0.00 0.00 0.00 2.90
101 102 4.022762 CGAATATCCGAAGAGTCCATGAGT 60.023 45.833 0.00 0.00 0.00 3.41
102 103 4.862902 ATATCCGAAGAGTCCATGAGTG 57.137 45.455 0.00 0.00 0.00 3.51
103 104 2.215942 TCCGAAGAGTCCATGAGTGA 57.784 50.000 0.00 0.00 0.00 3.41
104 105 2.739943 TCCGAAGAGTCCATGAGTGAT 58.260 47.619 0.00 0.00 0.00 3.06
105 106 3.099905 TCCGAAGAGTCCATGAGTGATT 58.900 45.455 0.00 0.00 0.00 2.57
106 107 3.118992 TCCGAAGAGTCCATGAGTGATTG 60.119 47.826 0.00 0.00 0.00 2.67
107 108 2.606725 CGAAGAGTCCATGAGTGATTGC 59.393 50.000 0.00 0.00 0.00 3.56
108 109 3.678252 CGAAGAGTCCATGAGTGATTGCT 60.678 47.826 0.00 0.00 0.00 3.91
109 110 3.540314 AGAGTCCATGAGTGATTGCTC 57.460 47.619 0.00 0.00 36.12 4.26
110 111 3.106054 AGAGTCCATGAGTGATTGCTCT 58.894 45.455 0.00 0.00 36.51 4.09
111 112 4.285020 AGAGTCCATGAGTGATTGCTCTA 58.715 43.478 0.00 0.00 36.51 2.43
112 113 4.099266 AGAGTCCATGAGTGATTGCTCTAC 59.901 45.833 0.00 0.00 36.51 2.59
113 114 3.771479 AGTCCATGAGTGATTGCTCTACA 59.229 43.478 0.00 0.00 36.51 2.74
114 115 4.408270 AGTCCATGAGTGATTGCTCTACAT 59.592 41.667 0.00 0.00 36.51 2.29
115 116 4.510711 GTCCATGAGTGATTGCTCTACATG 59.489 45.833 0.00 0.00 36.51 3.21
116 117 4.406649 TCCATGAGTGATTGCTCTACATGA 59.593 41.667 0.00 0.00 36.70 3.07
117 118 4.750598 CCATGAGTGATTGCTCTACATGAG 59.249 45.833 0.00 0.00 45.33 2.90
118 119 5.358090 CATGAGTGATTGCTCTACATGAGT 58.642 41.667 0.00 0.00 44.41 3.41
119 120 4.752146 TGAGTGATTGCTCTACATGAGTG 58.248 43.478 0.00 0.00 44.41 3.51
120 121 4.221482 TGAGTGATTGCTCTACATGAGTGT 59.779 41.667 0.00 0.00 44.41 3.55
121 122 5.418840 TGAGTGATTGCTCTACATGAGTGTA 59.581 40.000 0.00 0.00 44.41 2.90
159 160 9.872721 AAGAAAATGGAGTAGTAGTAAGTTAGC 57.127 33.333 0.00 0.00 0.00 3.09
160 161 9.257428 AGAAAATGGAGTAGTAGTAAGTTAGCT 57.743 33.333 0.00 0.00 0.00 3.32
163 164 9.471702 AAATGGAGTAGTAGTAAGTTAGCTACA 57.528 33.333 17.45 0.00 39.82 2.74
164 165 9.471702 AATGGAGTAGTAGTAAGTTAGCTACAA 57.528 33.333 17.45 7.74 39.82 2.41
165 166 9.643735 ATGGAGTAGTAGTAAGTTAGCTACAAT 57.356 33.333 17.45 8.96 39.82 2.71
172 173 9.341078 AGTAGTAAGTTAGCTACAATAGAGGAC 57.659 37.037 17.45 0.00 39.82 3.85
173 174 9.118300 GTAGTAAGTTAGCTACAATAGAGGACA 57.882 37.037 13.37 0.00 37.92 4.02
174 175 8.770010 AGTAAGTTAGCTACAATAGAGGACAT 57.230 34.615 0.00 0.00 0.00 3.06
175 176 8.634444 AGTAAGTTAGCTACAATAGAGGACATG 58.366 37.037 0.00 0.00 0.00 3.21
176 177 6.412362 AGTTAGCTACAATAGAGGACATGG 57.588 41.667 0.00 0.00 0.00 3.66
190 191 6.486056 AGAGGACATGGTATATGATCGTAGT 58.514 40.000 0.00 0.00 0.00 2.73
201 202 1.476891 TGATCGTAGTCTTGTGGAGCC 59.523 52.381 0.00 0.00 0.00 4.70
203 204 1.153823 CGTAGTCTTGTGGAGCCGG 60.154 63.158 0.00 0.00 0.00 6.13
205 206 0.108756 GTAGTCTTGTGGAGCCGGAC 60.109 60.000 5.05 0.00 0.00 4.79
215 216 1.441729 GAGCCGGACGATGGATGAA 59.558 57.895 5.05 0.00 0.00 2.57
217 218 0.250038 AGCCGGACGATGGATGAATG 60.250 55.000 5.05 0.00 0.00 2.67
219 220 1.220529 CCGGACGATGGATGAATGTG 58.779 55.000 0.00 0.00 0.00 3.21
220 221 1.202521 CCGGACGATGGATGAATGTGA 60.203 52.381 0.00 0.00 0.00 3.58
222 223 2.738321 CGGACGATGGATGAATGTGACA 60.738 50.000 0.00 0.00 0.00 3.58
230 231 2.632377 GATGAATGTGACACCGTCCAT 58.368 47.619 2.45 1.71 0.00 3.41
269 270 1.913419 ACCATGTGGAAAGGATACGGT 59.087 47.619 5.96 0.00 39.68 4.83
323 326 2.002625 AGCCCAAAGGGTCTCCATC 58.997 57.895 3.68 0.00 46.51 3.51
336 339 6.444704 AGGGTCTCCATCTATTTACAAGAGA 58.555 40.000 0.00 0.00 34.83 3.10
338 341 6.551601 GGGTCTCCATCTATTTACAAGAGAGA 59.448 42.308 0.00 0.00 30.03 3.10
400 403 1.787847 GACACCGAAGCAACCATCG 59.212 57.895 0.00 0.00 38.74 3.84
401 404 2.240612 GACACCGAAGCAACCATCGC 62.241 60.000 0.00 0.00 37.73 4.58
417 420 2.202932 GCGGGACATGTCGAGCAT 60.203 61.111 28.09 0.00 38.60 3.79
435 438 1.004610 CATCGCGGCACTATCAACAAG 60.005 52.381 6.13 0.00 0.00 3.16
436 439 1.060937 CGCGGCACTATCAACAAGC 59.939 57.895 0.00 0.00 0.00 4.01
439 442 2.006888 GCGGCACTATCAACAAGCTTA 58.993 47.619 0.00 0.00 0.00 3.09
446 449 7.090173 GGCACTATCAACAAGCTTATTTTGAA 58.910 34.615 16.85 8.94 31.96 2.69
450 453 9.643693 ACTATCAACAAGCTTATTTTGAAATGG 57.356 29.630 16.85 9.29 31.96 3.16
454 457 8.991026 TCAACAAGCTTATTTTGAAATGGAATG 58.009 29.630 12.58 0.00 0.00 2.67
455 458 8.776470 CAACAAGCTTATTTTGAAATGGAATGT 58.224 29.630 0.00 0.00 0.00 2.71
456 459 9.995003 AACAAGCTTATTTTGAAATGGAATGTA 57.005 25.926 0.00 0.00 0.00 2.29
457 460 9.643693 ACAAGCTTATTTTGAAATGGAATGTAG 57.356 29.630 0.00 0.00 0.00 2.74
463 466 3.297134 TGAAATGGAATGTAGGAGGCC 57.703 47.619 0.00 0.00 0.00 5.19
472 475 3.933861 ATGTAGGAGGCCAGGTAAAAG 57.066 47.619 5.01 0.00 0.00 2.27
473 476 1.280998 TGTAGGAGGCCAGGTAAAAGC 59.719 52.381 5.01 0.00 0.00 3.51
479 482 1.080772 GCCAGGTAAAAGCCGTTGC 60.081 57.895 0.00 0.00 37.95 4.17
489 492 3.637714 GCCGTTGCTCGAAGACAA 58.362 55.556 3.69 0.00 42.86 3.18
490 493 1.938861 GCCGTTGCTCGAAGACAAA 59.061 52.632 3.69 0.00 42.86 2.83
491 494 0.517316 GCCGTTGCTCGAAGACAAAT 59.483 50.000 3.69 0.00 42.86 2.32
494 497 3.181510 GCCGTTGCTCGAAGACAAATATT 60.182 43.478 3.69 0.00 42.86 1.28
495 498 4.671766 GCCGTTGCTCGAAGACAAATATTT 60.672 41.667 0.00 0.00 42.86 1.40
496 499 4.788100 CCGTTGCTCGAAGACAAATATTTG 59.212 41.667 23.60 23.60 42.86 2.32
497 500 4.260656 CGTTGCTCGAAGACAAATATTTGC 59.739 41.667 24.82 17.82 40.79 3.68
498 501 4.002267 TGCTCGAAGACAAATATTTGCG 57.998 40.909 24.82 19.69 41.79 4.85
499 502 3.682377 TGCTCGAAGACAAATATTTGCGA 59.318 39.130 24.82 22.15 41.79 5.10
500 503 4.153296 TGCTCGAAGACAAATATTTGCGAA 59.847 37.500 24.82 10.80 41.79 4.70
501 504 4.725754 GCTCGAAGACAAATATTTGCGAAG 59.274 41.667 24.82 18.01 41.79 3.79
502 505 5.671329 GCTCGAAGACAAATATTTGCGAAGT 60.671 40.000 24.82 7.89 41.79 3.01
503 506 6.455113 GCTCGAAGACAAATATTTGCGAAGTA 60.455 38.462 24.82 8.80 41.79 2.24
504 507 7.354025 TCGAAGACAAATATTTGCGAAGTAA 57.646 32.000 24.82 5.97 41.79 2.24
505 508 7.231607 TCGAAGACAAATATTTGCGAAGTAAC 58.768 34.615 24.82 9.75 41.79 2.50
506 509 6.464834 CGAAGACAAATATTTGCGAAGTAACC 59.535 38.462 24.82 6.83 41.79 2.85
507 510 5.864986 AGACAAATATTTGCGAAGTAACCG 58.135 37.500 24.82 0.81 41.79 4.44
508 511 5.640357 AGACAAATATTTGCGAAGTAACCGA 59.360 36.000 24.82 0.00 41.79 4.69
509 512 5.864986 ACAAATATTTGCGAAGTAACCGAG 58.135 37.500 24.82 0.22 41.79 4.63
510 513 5.163794 ACAAATATTTGCGAAGTAACCGAGG 60.164 40.000 24.82 0.00 41.79 4.63
511 514 1.734163 ATTTGCGAAGTAACCGAGGG 58.266 50.000 0.00 0.00 0.00 4.30
512 515 0.680618 TTTGCGAAGTAACCGAGGGA 59.319 50.000 0.00 0.00 0.00 4.20
513 516 0.037975 TTGCGAAGTAACCGAGGGAC 60.038 55.000 0.00 0.00 0.00 4.46
538 541 3.188667 GGGACGAAGAAGAAATGAACCAC 59.811 47.826 0.00 0.00 0.00 4.16
543 546 4.398319 GAAGAAGAAATGAACCACCTCCA 58.602 43.478 0.00 0.00 0.00 3.86
544 547 4.026356 AGAAGAAATGAACCACCTCCAG 57.974 45.455 0.00 0.00 0.00 3.86
561 564 7.047891 CACCTCCAGCACTATCTATGTAAAAA 58.952 38.462 0.00 0.00 0.00 1.94
563 566 6.708054 CCTCCAGCACTATCTATGTAAAAAGG 59.292 42.308 0.00 0.00 0.00 3.11
564 567 7.195374 TCCAGCACTATCTATGTAAAAAGGT 57.805 36.000 0.00 0.00 0.00 3.50
565 568 8.313944 TCCAGCACTATCTATGTAAAAAGGTA 57.686 34.615 0.00 0.00 0.00 3.08
566 569 8.421784 TCCAGCACTATCTATGTAAAAAGGTAG 58.578 37.037 0.00 0.00 33.45 3.18
567 570 7.171678 CCAGCACTATCTATGTAAAAAGGTAGC 59.828 40.741 0.00 0.00 30.84 3.58
568 571 7.710907 CAGCACTATCTATGTAAAAAGGTAGCA 59.289 37.037 0.00 0.00 30.84 3.49
601 604 3.359654 GAGCGCCGGTAAAAATAATGTG 58.640 45.455 2.29 0.00 0.00 3.21
659 662 1.803334 TTTCCGGTTGAGATTGACGG 58.197 50.000 0.00 0.00 45.52 4.79
695 698 3.127533 CCAGTAGCTGGCGCCAAC 61.128 66.667 32.09 27.13 45.13 3.77
696 699 2.046892 CAGTAGCTGGCGCCAACT 60.047 61.111 33.00 33.00 36.60 3.16
697 700 2.046892 AGTAGCTGGCGCCAACTG 60.047 61.111 36.51 24.15 33.19 3.16
698 701 3.804193 GTAGCTGGCGCCAACTGC 61.804 66.667 36.51 32.36 36.60 4.40
705 708 2.050077 GCGCCAACTGCCAAGAAC 60.050 61.111 0.00 0.00 36.24 3.01
706 709 2.844451 GCGCCAACTGCCAAGAACA 61.844 57.895 0.00 0.00 36.24 3.18
707 710 1.959085 CGCCAACTGCCAAGAACAT 59.041 52.632 0.00 0.00 36.24 2.71
708 711 0.314935 CGCCAACTGCCAAGAACATT 59.685 50.000 0.00 0.00 36.24 2.71
709 712 1.269726 CGCCAACTGCCAAGAACATTT 60.270 47.619 0.00 0.00 36.24 2.32
710 713 2.802774 CGCCAACTGCCAAGAACATTTT 60.803 45.455 0.00 0.00 36.24 1.82
711 714 2.802247 GCCAACTGCCAAGAACATTTTC 59.198 45.455 0.00 0.00 0.00 2.29
712 715 3.392882 CCAACTGCCAAGAACATTTTCC 58.607 45.455 0.00 0.00 31.28 3.13
713 716 3.181467 CCAACTGCCAAGAACATTTTCCA 60.181 43.478 0.00 0.00 31.28 3.53
714 717 4.053295 CAACTGCCAAGAACATTTTCCAG 58.947 43.478 0.00 0.00 31.28 3.86
715 718 2.629617 ACTGCCAAGAACATTTTCCAGG 59.370 45.455 0.00 0.00 31.28 4.45
716 719 1.969923 TGCCAAGAACATTTTCCAGGG 59.030 47.619 3.07 0.00 31.28 4.45
717 720 1.970640 GCCAAGAACATTTTCCAGGGT 59.029 47.619 3.07 0.00 31.28 4.34
718 721 3.161866 GCCAAGAACATTTTCCAGGGTA 58.838 45.455 3.07 0.00 31.28 3.69
719 722 3.576550 GCCAAGAACATTTTCCAGGGTAA 59.423 43.478 3.07 0.00 31.28 2.85
720 723 4.039852 GCCAAGAACATTTTCCAGGGTAAA 59.960 41.667 3.07 0.00 31.28 2.01
721 724 5.454045 GCCAAGAACATTTTCCAGGGTAAAA 60.454 40.000 3.07 0.00 31.28 1.52
722 725 6.744056 GCCAAGAACATTTTCCAGGGTAAAAT 60.744 38.462 3.07 0.00 37.08 1.82
726 729 3.872696 CATTTTCCAGGGTAAAATGGCC 58.127 45.455 14.67 0.00 44.75 5.36
727 730 1.551452 TTTCCAGGGTAAAATGGCCG 58.449 50.000 0.00 0.00 36.47 6.13
728 731 0.406361 TTCCAGGGTAAAATGGCCGT 59.594 50.000 0.00 0.00 36.47 5.68
729 732 0.034863 TCCAGGGTAAAATGGCCGTC 60.035 55.000 0.00 0.00 36.47 4.79
730 733 1.373590 CCAGGGTAAAATGGCCGTCG 61.374 60.000 0.00 0.00 0.00 5.12
731 734 1.747745 AGGGTAAAATGGCCGTCGC 60.748 57.895 0.00 0.00 0.00 5.19
732 735 2.041686 GGGTAAAATGGCCGTCGCA 61.042 57.895 0.00 0.00 36.38 5.10
733 736 1.381165 GGGTAAAATGGCCGTCGCAT 61.381 55.000 0.00 0.00 36.38 4.73
734 737 0.454196 GGTAAAATGGCCGTCGCATT 59.546 50.000 0.00 0.00 36.38 3.56
735 738 1.135228 GGTAAAATGGCCGTCGCATTT 60.135 47.619 0.00 0.00 36.38 2.32
736 739 1.917303 GTAAAATGGCCGTCGCATTTG 59.083 47.619 0.00 0.00 36.38 2.32
737 740 0.389687 AAAATGGCCGTCGCATTTGG 60.390 50.000 0.00 0.00 36.38 3.28
738 741 1.247419 AAATGGCCGTCGCATTTGGA 61.247 50.000 0.00 0.00 36.38 3.53
739 742 1.247419 AATGGCCGTCGCATTTGGAA 61.247 50.000 0.00 0.00 36.38 3.53
740 743 1.037030 ATGGCCGTCGCATTTGGAAT 61.037 50.000 0.00 0.00 36.38 3.01
741 744 1.247419 TGGCCGTCGCATTTGGAATT 61.247 50.000 0.00 0.00 36.38 2.17
742 745 0.108851 GGCCGTCGCATTTGGAATTT 60.109 50.000 0.00 0.00 36.38 1.82
743 746 1.671556 GGCCGTCGCATTTGGAATTTT 60.672 47.619 0.00 0.00 36.38 1.82
744 747 1.389784 GCCGTCGCATTTGGAATTTTG 59.610 47.619 0.00 0.00 34.03 2.44
745 748 2.924454 GCCGTCGCATTTGGAATTTTGA 60.924 45.455 0.00 0.00 34.03 2.69
746 749 3.510719 CCGTCGCATTTGGAATTTTGAT 58.489 40.909 0.00 0.00 0.00 2.57
747 750 3.925913 CCGTCGCATTTGGAATTTTGATT 59.074 39.130 0.00 0.00 0.00 2.57
748 751 4.388469 CCGTCGCATTTGGAATTTTGATTT 59.612 37.500 0.00 0.00 0.00 2.17
749 752 5.107143 CCGTCGCATTTGGAATTTTGATTTT 60.107 36.000 0.00 0.00 0.00 1.82
750 753 6.361899 CGTCGCATTTGGAATTTTGATTTTT 58.638 32.000 0.00 0.00 0.00 1.94
751 754 6.516017 CGTCGCATTTGGAATTTTGATTTTTC 59.484 34.615 0.00 0.00 0.00 2.29
752 755 7.351223 GTCGCATTTGGAATTTTGATTTTTCA 58.649 30.769 0.00 0.00 0.00 2.69
753 756 7.531534 GTCGCATTTGGAATTTTGATTTTTCAG 59.468 33.333 0.00 0.00 0.00 3.02
754 757 7.440556 TCGCATTTGGAATTTTGATTTTTCAGA 59.559 29.630 0.00 0.00 0.00 3.27
755 758 7.742963 CGCATTTGGAATTTTGATTTTTCAGAG 59.257 33.333 0.00 0.00 0.00 3.35
756 759 8.562052 GCATTTGGAATTTTGATTTTTCAGAGT 58.438 29.630 0.00 0.00 0.00 3.24
757 760 9.872757 CATTTGGAATTTTGATTTTTCAGAGTG 57.127 29.630 0.00 0.00 0.00 3.51
758 761 8.436046 TTTGGAATTTTGATTTTTCAGAGTGG 57.564 30.769 0.00 0.00 0.00 4.00
759 762 7.123355 TGGAATTTTGATTTTTCAGAGTGGT 57.877 32.000 0.00 0.00 0.00 4.16
760 763 8.243961 TGGAATTTTGATTTTTCAGAGTGGTA 57.756 30.769 0.00 0.00 0.00 3.25
761 764 8.359642 TGGAATTTTGATTTTTCAGAGTGGTAG 58.640 33.333 0.00 0.00 0.00 3.18
762 765 7.329471 GGAATTTTGATTTTTCAGAGTGGTAGC 59.671 37.037 0.00 0.00 0.00 3.58
763 766 5.705609 TTTGATTTTTCAGAGTGGTAGCC 57.294 39.130 0.00 0.00 0.00 3.93
764 767 3.334691 TGATTTTTCAGAGTGGTAGCCG 58.665 45.455 0.00 0.00 0.00 5.52
765 768 3.007506 TGATTTTTCAGAGTGGTAGCCGA 59.992 43.478 0.00 0.00 0.00 5.54
766 769 2.743636 TTTTCAGAGTGGTAGCCGAG 57.256 50.000 0.00 0.00 0.00 4.63
767 770 1.919240 TTTCAGAGTGGTAGCCGAGA 58.081 50.000 0.00 0.00 0.00 4.04
768 771 1.464734 TTCAGAGTGGTAGCCGAGAG 58.535 55.000 0.00 0.00 0.00 3.20
800 803 2.413837 CCGTAGAGTGGAAAGTGTTGG 58.586 52.381 0.00 0.00 0.00 3.77
832 835 4.065281 GCCACGTCCACGGCTACT 62.065 66.667 7.35 0.00 45.29 2.57
833 836 2.126071 CCACGTCCACGGCTACTG 60.126 66.667 3.81 0.00 44.95 2.74
835 838 2.599578 ACGTCCACGGCTACTGGT 60.600 61.111 3.81 0.00 44.95 4.00
844 856 0.798776 CGGCTACTGGTGAAAAGCTG 59.201 55.000 0.00 0.00 35.30 4.24
893 906 1.152567 CCTTTTGCTCCACCACCCA 60.153 57.895 0.00 0.00 0.00 4.51
901 914 2.523168 CCACCACCCAACCCAACC 60.523 66.667 0.00 0.00 0.00 3.77
903 916 3.030611 ACCACCCAACCCAACCCA 61.031 61.111 0.00 0.00 0.00 4.51
907 920 2.525629 CCCAACCCAACCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
908 921 2.283809 CCAACCCAACCCAACCCA 59.716 61.111 0.00 0.00 0.00 4.51
909 922 1.383248 CCAACCCAACCCAACCCAA 60.383 57.895 0.00 0.00 0.00 4.12
910 923 1.406860 CCAACCCAACCCAACCCAAG 61.407 60.000 0.00 0.00 0.00 3.61
911 924 0.397816 CAACCCAACCCAACCCAAGA 60.398 55.000 0.00 0.00 0.00 3.02
915 928 0.895559 CCAACCCAACCCAAGAGAGC 60.896 60.000 0.00 0.00 0.00 4.09
962 981 0.407918 AAACCAATCCACCCATCCGT 59.592 50.000 0.00 0.00 0.00 4.69
965 984 1.152963 CAATCCACCCATCCGTCCC 60.153 63.158 0.00 0.00 0.00 4.46
966 985 1.307866 AATCCACCCATCCGTCCCT 60.308 57.895 0.00 0.00 0.00 4.20
967 986 1.345715 AATCCACCCATCCGTCCCTC 61.346 60.000 0.00 0.00 0.00 4.30
969 988 2.687200 CACCCATCCGTCCCTCCA 60.687 66.667 0.00 0.00 0.00 3.86
971 990 3.480133 CCCATCCGTCCCTCCACC 61.480 72.222 0.00 0.00 0.00 4.61
973 992 3.849951 CATCCGTCCCTCCACCCG 61.850 72.222 0.00 0.00 0.00 5.28
1476 1565 3.882888 TCTCACCACATTCAGTCCAAAAC 59.117 43.478 0.00 0.00 0.00 2.43
1559 1657 6.424812 TCCATCATCGCATAGAAAATACTGTG 59.575 38.462 0.00 0.00 33.30 3.66
1605 1710 0.179089 CTGCTCCAGAATCCTCACGG 60.179 60.000 0.00 0.00 32.44 4.94
1618 1724 0.457851 CTCACGGGAGGATGACTGTC 59.542 60.000 6.84 0.00 37.51 3.51
1632 1738 1.970114 CTGTCAGGCAGGCAACCAG 60.970 63.158 0.00 0.00 41.42 4.00
1633 1739 3.368571 GTCAGGCAGGCAACCAGC 61.369 66.667 0.00 0.00 44.65 4.85
1634 1740 3.573229 TCAGGCAGGCAACCAGCT 61.573 61.111 0.00 0.00 44.79 4.24
1672 1778 3.056465 AGAGTCTAACCAGCAACTGTAGC 60.056 47.826 0.00 0.00 0.00 3.58
1676 1782 1.308998 AACCAGCAACTGTAGCACAC 58.691 50.000 0.00 0.00 0.00 3.82
1692 1802 3.374058 AGCACACACACGGATATAAAAGC 59.626 43.478 0.00 0.00 0.00 3.51
1720 1830 1.927487 TCTGCCGACTTTGGTAGGTA 58.073 50.000 1.11 0.00 41.57 3.08
1788 1898 5.241403 TCTCAGGGAAGCAATCAGTAAAA 57.759 39.130 0.00 0.00 0.00 1.52
1790 1900 4.335416 TCAGGGAAGCAATCAGTAAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
1791 1901 3.445096 CAGGGAAGCAATCAGTAAAAGGG 59.555 47.826 0.00 0.00 0.00 3.95
1792 1902 3.333680 AGGGAAGCAATCAGTAAAAGGGA 59.666 43.478 0.00 0.00 0.00 4.20
1793 1903 3.696548 GGGAAGCAATCAGTAAAAGGGAG 59.303 47.826 0.00 0.00 0.00 4.30
1794 1904 4.336280 GGAAGCAATCAGTAAAAGGGAGT 58.664 43.478 0.00 0.00 0.00 3.85
1797 1907 4.729868 AGCAATCAGTAAAAGGGAGTGTT 58.270 39.130 0.00 0.00 0.00 3.32
1798 1908 4.762251 AGCAATCAGTAAAAGGGAGTGTTC 59.238 41.667 0.00 0.00 0.00 3.18
1799 1909 4.518970 GCAATCAGTAAAAGGGAGTGTTCA 59.481 41.667 0.00 0.00 0.00 3.18
1800 1910 5.335191 GCAATCAGTAAAAGGGAGTGTTCAG 60.335 44.000 0.00 0.00 0.00 3.02
1801 1911 5.568620 ATCAGTAAAAGGGAGTGTTCAGT 57.431 39.130 0.00 0.00 0.00 3.41
1802 1912 5.367945 TCAGTAAAAGGGAGTGTTCAGTT 57.632 39.130 0.00 0.00 0.00 3.16
1803 1913 6.488769 TCAGTAAAAGGGAGTGTTCAGTTA 57.511 37.500 0.00 0.00 0.00 2.24
1804 1914 6.522054 TCAGTAAAAGGGAGTGTTCAGTTAG 58.478 40.000 0.00 0.00 0.00 2.34
1805 1915 6.099269 TCAGTAAAAGGGAGTGTTCAGTTAGT 59.901 38.462 0.00 0.00 0.00 2.24
1806 1916 6.424207 CAGTAAAAGGGAGTGTTCAGTTAGTC 59.576 42.308 0.00 0.00 0.00 2.59
1807 1917 3.662247 AAGGGAGTGTTCAGTTAGTCG 57.338 47.619 0.00 0.00 0.00 4.18
1808 1918 2.595238 AGGGAGTGTTCAGTTAGTCGT 58.405 47.619 0.00 0.00 0.00 4.34
1809 1919 2.557490 AGGGAGTGTTCAGTTAGTCGTC 59.443 50.000 0.00 0.00 0.00 4.20
1811 1921 2.295349 GGAGTGTTCAGTTAGTCGTCCA 59.705 50.000 0.00 0.00 0.00 4.02
1812 1922 3.306818 GAGTGTTCAGTTAGTCGTCCAC 58.693 50.000 0.00 0.00 0.00 4.02
1813 1923 2.049228 GTGTTCAGTTAGTCGTCCACG 58.951 52.381 0.00 0.00 41.45 4.94
1814 1924 1.677576 TGTTCAGTTAGTCGTCCACGT 59.322 47.619 0.00 0.00 40.80 4.49
1815 1925 2.287188 TGTTCAGTTAGTCGTCCACGTC 60.287 50.000 0.00 0.00 40.80 4.34
1816 1926 0.514255 TCAGTTAGTCGTCCACGTCG 59.486 55.000 0.00 0.00 40.80 5.12
1817 1927 1.063951 CAGTTAGTCGTCCACGTCGC 61.064 60.000 0.00 0.00 40.80 5.19
1818 1928 2.142239 GTTAGTCGTCCACGTCGCG 61.142 63.158 0.00 0.00 40.80 5.87
1819 1929 3.313007 TTAGTCGTCCACGTCGCGG 62.313 63.158 6.13 0.00 40.80 6.46
1827 1937 2.885644 CACGTCGCGGGGATTGAG 60.886 66.667 6.13 0.00 0.00 3.02
1828 1938 3.066190 ACGTCGCGGGGATTGAGA 61.066 61.111 6.13 0.00 0.00 3.27
1829 1939 2.183300 CGTCGCGGGGATTGAGAA 59.817 61.111 6.13 0.00 0.00 2.87
1830 1940 2.165301 CGTCGCGGGGATTGAGAAC 61.165 63.158 6.13 0.00 0.00 3.01
1831 1941 1.814169 GTCGCGGGGATTGAGAACC 60.814 63.158 6.13 0.00 0.00 3.62
1832 1942 2.267642 CGCGGGGATTGAGAACCA 59.732 61.111 0.00 0.00 0.00 3.67
1833 1943 2.106683 CGCGGGGATTGAGAACCAC 61.107 63.158 0.00 0.00 0.00 4.16
1834 1944 1.299976 GCGGGGATTGAGAACCACT 59.700 57.895 0.00 0.00 0.00 4.00
1835 1945 1.026718 GCGGGGATTGAGAACCACTG 61.027 60.000 0.00 0.00 0.00 3.66
1836 1946 0.392998 CGGGGATTGAGAACCACTGG 60.393 60.000 0.00 0.00 0.00 4.00
1837 1947 0.698818 GGGGATTGAGAACCACTGGT 59.301 55.000 0.00 0.00 37.65 4.00
1869 1979 4.608948 AGTTATAGCTTTCTCGGATGGG 57.391 45.455 0.00 0.00 0.00 4.00
1870 1980 3.325135 AGTTATAGCTTTCTCGGATGGGG 59.675 47.826 0.00 0.00 0.00 4.96
1871 1981 0.398318 ATAGCTTTCTCGGATGGGGC 59.602 55.000 0.00 0.00 0.00 5.80
1872 1982 0.691078 TAGCTTTCTCGGATGGGGCT 60.691 55.000 0.00 0.00 0.00 5.19
1876 1986 1.696097 TTTCTCGGATGGGGCTAGGC 61.696 60.000 8.00 8.00 0.00 3.93
1877 1987 2.844362 CTCGGATGGGGCTAGGCA 60.844 66.667 19.14 0.00 0.00 4.75
1878 1988 2.122413 TCGGATGGGGCTAGGCAT 60.122 61.111 19.14 3.49 0.00 4.40
1880 1990 2.822637 CGGATGGGGCTAGGCATGT 61.823 63.158 19.14 2.29 0.00 3.21
1881 1991 1.538666 GGATGGGGCTAGGCATGTT 59.461 57.895 19.14 0.00 0.00 2.71
1886 2016 1.037579 GGGGCTAGGCATGTTTGGTC 61.038 60.000 19.14 0.00 0.00 4.02
1982 2117 4.013050 CTCCTTTTTCCACTTGGATCTCC 58.987 47.826 0.00 0.00 44.98 3.71
1983 2118 3.397618 TCCTTTTTCCACTTGGATCTCCA 59.602 43.478 0.00 0.00 44.98 3.86
2010 2145 6.765036 TCTTGTGAGAAATCATCCTCTATTGC 59.235 38.462 0.00 0.00 0.00 3.56
2017 2152 8.204903 AGAAATCATCCTCTATTGCTATGAGT 57.795 34.615 0.00 0.00 30.65 3.41
2021 2156 7.936496 TCATCCTCTATTGCTATGAGTCTAG 57.064 40.000 0.00 0.00 0.00 2.43
2023 2158 8.335484 TCATCCTCTATTGCTATGAGTCTAGAT 58.665 37.037 0.00 0.00 0.00 1.98
2024 2159 9.625747 CATCCTCTATTGCTATGAGTCTAGATA 57.374 37.037 0.00 0.00 0.00 1.98
2025 2160 9.851686 ATCCTCTATTGCTATGAGTCTAGATAG 57.148 37.037 0.00 0.00 0.00 2.08
2028 2163 9.851686 CTCTATTGCTATGAGTCTAGATAGGAT 57.148 37.037 0.00 0.00 0.00 3.24
2031 2166 8.752005 ATTGCTATGAGTCTAGATAGGATCTC 57.248 38.462 0.00 0.00 40.76 2.75
2032 2167 7.264294 TGCTATGAGTCTAGATAGGATCTCA 57.736 40.000 10.02 10.02 40.76 3.27
2034 2169 7.992608 TGCTATGAGTCTAGATAGGATCTCATC 59.007 40.741 19.17 10.54 41.09 2.92
2035 2170 8.213679 GCTATGAGTCTAGATAGGATCTCATCT 58.786 40.741 19.17 12.33 41.09 2.90
2036 2171 9.551734 CTATGAGTCTAGATAGGATCTCATCTG 57.448 40.741 19.17 12.49 41.09 2.90
2040 2208 9.295825 GAGTCTAGATAGGATCTCATCTGAAAA 57.704 37.037 15.62 0.86 40.76 2.29
2045 2213 8.365060 AGATAGGATCTCATCTGAAAATCGAT 57.635 34.615 8.30 0.00 33.42 3.59
2046 2214 8.469200 AGATAGGATCTCATCTGAAAATCGATC 58.531 37.037 0.00 0.00 33.42 3.69
2152 2330 3.057456 GGCGATCTATGGTACGTCTGAAT 60.057 47.826 0.00 0.00 0.00 2.57
2219 2401 5.070313 TGAAAATTTTGCTTCTGGCCTTACT 59.930 36.000 8.47 0.00 40.92 2.24
2231 2413 3.857052 TGGCCTTACTGATTCGTAACTG 58.143 45.455 3.32 0.00 0.00 3.16
2247 2429 5.644636 TCGTAACTGACACTTTCCACTTTTT 59.355 36.000 0.00 0.00 0.00 1.94
2383 2565 2.170607 AGGCCGCCCATATGATATGTAC 59.829 50.000 5.55 2.47 0.00 2.90
2398 2580 2.045242 TACGACGCAGCCCTCTCT 60.045 61.111 0.00 0.00 0.00 3.10
2443 2625 7.337942 CCAATTGATATCCAGGTAAGATAAGCC 59.662 40.741 7.12 0.00 30.31 4.35
2458 2644 6.770746 AGATAAGCCGAAGAAGTTACTGTA 57.229 37.500 0.00 0.00 0.00 2.74
2459 2645 6.797454 AGATAAGCCGAAGAAGTTACTGTAG 58.203 40.000 0.00 0.00 0.00 2.74
2463 2652 6.038997 AGCCGAAGAAGTTACTGTAGAATT 57.961 37.500 0.00 0.00 0.00 2.17
2476 2665 9.148104 GTTACTGTAGAATTTATGAAACTCCGT 57.852 33.333 0.00 0.00 0.00 4.69
2478 2667 7.383687 ACTGTAGAATTTATGAAACTCCGTCA 58.616 34.615 0.00 0.00 0.00 4.35
2490 2679 7.406031 TGAAACTCCGTCAGATAGAAGTTAT 57.594 36.000 0.00 0.00 0.00 1.89
2493 2682 6.150396 ACTCCGTCAGATAGAAGTTATTGG 57.850 41.667 0.00 0.00 0.00 3.16
2527 2752 7.539712 TCATAATCTCTTTTCTTTACAGCCG 57.460 36.000 0.00 0.00 0.00 5.52
2536 2761 4.537135 TTCTTTACAGCCGTTCAGAGAT 57.463 40.909 0.00 0.00 0.00 2.75
2557 2782 3.967467 ATGATTGAAGGGATGAGGCTT 57.033 42.857 0.00 0.00 0.00 4.35
2580 2805 6.494666 TGACCTTTGGAAATCGAGGTATAT 57.505 37.500 0.00 0.00 42.35 0.86
2800 3025 4.889409 ACTCCATTATTACAAGCCATGTGG 59.111 41.667 3.13 0.00 43.77 4.17
2936 3244 7.752239 TGCAACTACGACTAGTGTATTTTACTC 59.248 37.037 0.00 0.00 33.14 2.59
2937 3245 7.967303 GCAACTACGACTAGTGTATTTTACTCT 59.033 37.037 0.00 0.00 33.14 3.24
3205 3513 0.909610 TTGATGAGGCCGAGAAGGGT 60.910 55.000 0.00 0.00 41.48 4.34
3223 3531 2.697751 GGGTGTCATGCATCTAGACTCT 59.302 50.000 14.61 0.00 33.56 3.24
3292 3600 8.114331 TGAGATGCTGTCAAACAAAATAAGAT 57.886 30.769 0.00 0.00 0.00 2.40
3293 3601 8.579006 TGAGATGCTGTCAAACAAAATAAGATT 58.421 29.630 0.00 0.00 0.00 2.40
3294 3602 9.415544 GAGATGCTGTCAAACAAAATAAGATTT 57.584 29.630 0.00 0.00 0.00 2.17
3295 3603 9.768662 AGATGCTGTCAAACAAAATAAGATTTT 57.231 25.926 0.00 0.00 0.00 1.82
3469 3777 0.738389 ACAACAACTTCACCAAGCGG 59.262 50.000 0.00 0.00 38.77 5.52
3472 3780 1.898574 CAACTTCACCAAGCGGGCT 60.899 57.895 0.00 0.00 42.05 5.19
3496 3804 0.467290 TGGGCAAGGCGAAGAAGTTT 60.467 50.000 0.00 0.00 0.00 2.66
3511 3819 0.526662 AGTTTCTGTCTCTACCGGCG 59.473 55.000 0.00 0.00 0.00 6.46
3564 3872 3.135994 CAAAGCAAAGCAAAGCAATCCT 58.864 40.909 0.00 0.00 0.00 3.24
3578 3886 5.627182 AGCAATCCTGTAGATCAGATGTT 57.373 39.130 0.00 0.00 46.27 2.71
3655 3963 6.866010 TTGGCTGTTGTATATATTCAGCTG 57.134 37.500 23.06 7.63 46.92 4.24
3674 3982 1.675552 GTATGTTTGCCATACGCCCT 58.324 50.000 0.00 0.00 44.73 5.19
3676 3984 1.095228 ATGTTTGCCATACGCCCTCG 61.095 55.000 0.00 0.00 42.43 4.63
3721 4029 1.076014 TCGGGTCCTGCTGTACTGA 59.924 57.895 3.61 0.00 0.00 3.41
3793 4108 6.197096 CCAGTTGAATGAAGAAGAAACAAACG 59.803 38.462 0.00 0.00 0.00 3.60
3842 4157 4.502016 TCAACATCACTCAGATTCAGAGC 58.498 43.478 6.03 0.00 36.58 4.09
3861 4176 1.742268 GCTCACCTCTGCAAATCCTTC 59.258 52.381 0.00 0.00 0.00 3.46
3866 4181 2.238395 ACCTCTGCAAATCCTTCTCTCC 59.762 50.000 0.00 0.00 0.00 3.71
3877 4192 7.597386 CAAATCCTTCTCTCCTTTTTGGTTAG 58.403 38.462 0.00 0.00 37.07 2.34
3881 4196 5.935206 CCTTCTCTCCTTTTTGGTTAGAGAC 59.065 44.000 0.00 0.00 42.21 3.36
3929 4244 1.410882 GGCTAGGAGGCTAACACTGAG 59.589 57.143 0.00 0.00 37.85 3.35
3969 4284 3.851051 CTCCAGAGCCCAGACTTTC 57.149 57.895 0.00 0.00 0.00 2.62
3970 4285 1.274712 CTCCAGAGCCCAGACTTTCT 58.725 55.000 0.00 0.00 0.00 2.52
4067 4402 5.503634 TCATCTTGAATTCTGGAACTGGA 57.496 39.130 7.05 0.76 0.00 3.86
4116 4451 2.504367 AGTGTTGGCCAAGTGTATGTC 58.496 47.619 21.21 4.81 0.00 3.06
4119 4454 2.224992 TGTTGGCCAAGTGTATGTCCAT 60.225 45.455 21.21 0.00 0.00 3.41
4120 4455 2.418368 TGGCCAAGTGTATGTCCATC 57.582 50.000 0.61 0.00 0.00 3.51
4127 4462 4.444733 CCAAGTGTATGTCCATCTGGCATA 60.445 45.833 8.40 8.40 35.01 3.14
4130 4465 4.410228 AGTGTATGTCCATCTGGCATAAGT 59.590 41.667 12.09 6.34 36.60 2.24
4131 4466 5.602561 AGTGTATGTCCATCTGGCATAAGTA 59.397 40.000 12.09 3.88 36.60 2.24
4132 4467 6.270927 AGTGTATGTCCATCTGGCATAAGTAT 59.729 38.462 12.09 1.90 36.60 2.12
4133 4468 6.591834 GTGTATGTCCATCTGGCATAAGTATC 59.408 42.308 12.09 4.42 36.60 2.24
4134 4469 6.498303 TGTATGTCCATCTGGCATAAGTATCT 59.502 38.462 12.09 0.00 36.60 1.98
4135 4470 5.894298 TGTCCATCTGGCATAAGTATCTT 57.106 39.130 0.00 0.00 34.44 2.40
4136 4471 5.858381 TGTCCATCTGGCATAAGTATCTTC 58.142 41.667 0.00 0.00 34.44 2.87
4137 4472 5.366477 TGTCCATCTGGCATAAGTATCTTCA 59.634 40.000 0.00 0.00 34.44 3.02
4139 4474 6.593382 GTCCATCTGGCATAAGTATCTTCATC 59.407 42.308 0.00 0.00 34.44 2.92
4140 4475 6.270695 TCCATCTGGCATAAGTATCTTCATCA 59.729 38.462 0.00 0.00 34.44 3.07
4141 4476 7.037802 TCCATCTGGCATAAGTATCTTCATCAT 60.038 37.037 0.00 0.00 34.44 2.45
4142 4477 8.262933 CCATCTGGCATAAGTATCTTCATCATA 58.737 37.037 0.00 0.00 0.00 2.15
4143 4478 9.662947 CATCTGGCATAAGTATCTTCATCATAA 57.337 33.333 0.00 0.00 0.00 1.90
4145 4480 9.881649 TCTGGCATAAGTATCTTCATCATAATC 57.118 33.333 0.00 0.00 0.00 1.75
4188 4531 0.539051 AAGGAAGGAGAGCCACATCG 59.461 55.000 0.00 0.00 36.29 3.84
4234 4577 3.695830 TTTGGACGCTTTATGGACTCT 57.304 42.857 0.00 0.00 0.00 3.24
4246 4589 1.248486 TGGACTCTGTCGTCTCCTTG 58.752 55.000 0.00 0.00 34.38 3.61
4249 4592 0.885196 ACTCTGTCGTCTCCTTGCTC 59.115 55.000 0.00 0.00 0.00 4.26
4371 4722 2.165641 AGGATGTGTCTGCAATGCAATG 59.834 45.455 9.92 0.00 38.41 2.82
4431 4782 1.373570 CATTCTGGTTCCCTTCGCTC 58.626 55.000 0.00 0.00 0.00 5.03
4474 4825 1.172812 GGTGGTGACCTGCCTGTTTC 61.173 60.000 2.11 0.00 39.47 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.831715 AAATCCAAAAATACAAGCTAAGGTTG 57.168 30.769 0.00 0.00 45.13 3.77
8 9 9.845740 AAAAATCCAAAAATACAAGCTAAGGTT 57.154 25.926 0.00 0.00 0.00 3.50
9 10 9.489084 GAAAAATCCAAAAATACAAGCTAAGGT 57.511 29.630 0.00 0.00 0.00 3.50
10 11 9.710900 AGAAAAATCCAAAAATACAAGCTAAGG 57.289 29.630 0.00 0.00 0.00 2.69
22 23 9.771534 CCTACCATTGTTAGAAAAATCCAAAAA 57.228 29.630 0.00 0.00 0.00 1.94
23 24 8.371699 CCCTACCATTGTTAGAAAAATCCAAAA 58.628 33.333 0.00 0.00 0.00 2.44
24 25 7.511028 ACCCTACCATTGTTAGAAAAATCCAAA 59.489 33.333 0.00 0.00 0.00 3.28
25 26 7.013834 ACCCTACCATTGTTAGAAAAATCCAA 58.986 34.615 0.00 0.00 0.00 3.53
26 27 6.557568 ACCCTACCATTGTTAGAAAAATCCA 58.442 36.000 0.00 0.00 0.00 3.41
27 28 6.661805 TGACCCTACCATTGTTAGAAAAATCC 59.338 38.462 0.00 0.00 0.00 3.01
28 29 7.175990 TGTGACCCTACCATTGTTAGAAAAATC 59.824 37.037 0.00 0.00 0.00 2.17
29 30 7.007723 TGTGACCCTACCATTGTTAGAAAAAT 58.992 34.615 0.00 0.00 0.00 1.82
30 31 6.366340 TGTGACCCTACCATTGTTAGAAAAA 58.634 36.000 0.00 0.00 0.00 1.94
31 32 5.942961 TGTGACCCTACCATTGTTAGAAAA 58.057 37.500 0.00 0.00 0.00 2.29
32 33 5.570205 TGTGACCCTACCATTGTTAGAAA 57.430 39.130 0.00 0.00 0.00 2.52
33 34 5.570205 TTGTGACCCTACCATTGTTAGAA 57.430 39.130 0.00 0.00 0.00 2.10
34 35 5.514136 CCTTTGTGACCCTACCATTGTTAGA 60.514 44.000 0.00 0.00 0.00 2.10
35 36 4.700213 CCTTTGTGACCCTACCATTGTTAG 59.300 45.833 0.00 0.00 0.00 2.34
36 37 4.351407 TCCTTTGTGACCCTACCATTGTTA 59.649 41.667 0.00 0.00 0.00 2.41
37 38 3.139397 TCCTTTGTGACCCTACCATTGTT 59.861 43.478 0.00 0.00 0.00 2.83
38 39 2.714250 TCCTTTGTGACCCTACCATTGT 59.286 45.455 0.00 0.00 0.00 2.71
39 40 3.081804 GTCCTTTGTGACCCTACCATTG 58.918 50.000 0.00 0.00 0.00 2.82
40 41 3.434940 GTCCTTTGTGACCCTACCATT 57.565 47.619 0.00 0.00 0.00 3.16
49 50 0.251341 ATGGCTGGGTCCTTTGTGAC 60.251 55.000 0.00 0.00 34.42 3.67
50 51 0.038166 GATGGCTGGGTCCTTTGTGA 59.962 55.000 0.00 0.00 0.00 3.58
51 52 0.967380 GGATGGCTGGGTCCTTTGTG 60.967 60.000 0.00 0.00 0.00 3.33
52 53 1.384191 GGATGGCTGGGTCCTTTGT 59.616 57.895 0.00 0.00 0.00 2.83
53 54 0.032813 ATGGATGGCTGGGTCCTTTG 60.033 55.000 0.00 0.00 35.49 2.77
54 55 0.712380 AATGGATGGCTGGGTCCTTT 59.288 50.000 0.00 0.00 35.49 3.11
55 56 0.032813 CAATGGATGGCTGGGTCCTT 60.033 55.000 0.00 0.00 35.49 3.36
56 57 1.217057 ACAATGGATGGCTGGGTCCT 61.217 55.000 0.00 0.00 35.49 3.85
57 58 0.550914 TACAATGGATGGCTGGGTCC 59.449 55.000 0.00 0.00 35.02 4.46
58 59 2.024414 GTTACAATGGATGGCTGGGTC 58.976 52.381 0.00 0.00 0.00 4.46
59 60 1.681780 CGTTACAATGGATGGCTGGGT 60.682 52.381 0.00 0.00 0.00 4.51
60 61 1.024271 CGTTACAATGGATGGCTGGG 58.976 55.000 0.00 0.00 0.00 4.45
61 62 2.036958 TCGTTACAATGGATGGCTGG 57.963 50.000 0.00 0.00 0.00 4.85
62 63 5.106555 GGATATTCGTTACAATGGATGGCTG 60.107 44.000 0.00 0.00 0.00 4.85
63 64 5.003804 GGATATTCGTTACAATGGATGGCT 58.996 41.667 0.00 0.00 0.00 4.75
64 65 4.142902 CGGATATTCGTTACAATGGATGGC 60.143 45.833 0.00 0.00 0.00 4.40
65 66 5.234752 TCGGATATTCGTTACAATGGATGG 58.765 41.667 2.72 0.00 0.00 3.51
66 67 6.645003 TCTTCGGATATTCGTTACAATGGATG 59.355 38.462 2.72 0.00 0.00 3.51
67 68 6.755206 TCTTCGGATATTCGTTACAATGGAT 58.245 36.000 2.72 0.00 0.00 3.41
68 69 6.151663 TCTTCGGATATTCGTTACAATGGA 57.848 37.500 2.72 0.00 0.00 3.41
69 70 5.983720 ACTCTTCGGATATTCGTTACAATGG 59.016 40.000 2.72 0.00 0.00 3.16
70 71 6.144080 GGACTCTTCGGATATTCGTTACAATG 59.856 42.308 2.72 0.00 0.00 2.82
71 72 6.183360 TGGACTCTTCGGATATTCGTTACAAT 60.183 38.462 2.72 0.00 0.00 2.71
72 73 5.125900 TGGACTCTTCGGATATTCGTTACAA 59.874 40.000 2.72 0.00 0.00 2.41
73 74 4.641541 TGGACTCTTCGGATATTCGTTACA 59.358 41.667 2.72 0.00 0.00 2.41
74 75 5.179045 TGGACTCTTCGGATATTCGTTAC 57.821 43.478 2.72 0.00 0.00 2.50
75 76 5.533528 TCATGGACTCTTCGGATATTCGTTA 59.466 40.000 2.72 0.00 0.00 3.18
76 77 4.341235 TCATGGACTCTTCGGATATTCGTT 59.659 41.667 2.72 0.00 0.00 3.85
77 78 3.889538 TCATGGACTCTTCGGATATTCGT 59.110 43.478 2.72 0.00 0.00 3.85
78 79 4.022762 ACTCATGGACTCTTCGGATATTCG 60.023 45.833 0.00 0.00 0.00 3.34
79 80 5.010112 TCACTCATGGACTCTTCGGATATTC 59.990 44.000 0.00 0.00 0.00 1.75
80 81 4.895889 TCACTCATGGACTCTTCGGATATT 59.104 41.667 0.00 0.00 0.00 1.28
81 82 4.474394 TCACTCATGGACTCTTCGGATAT 58.526 43.478 0.00 0.00 0.00 1.63
82 83 3.898482 TCACTCATGGACTCTTCGGATA 58.102 45.455 0.00 0.00 0.00 2.59
83 84 2.739943 TCACTCATGGACTCTTCGGAT 58.260 47.619 0.00 0.00 0.00 4.18
84 85 2.215942 TCACTCATGGACTCTTCGGA 57.784 50.000 0.00 0.00 0.00 4.55
85 86 3.193263 CAATCACTCATGGACTCTTCGG 58.807 50.000 0.00 0.00 0.00 4.30
86 87 2.606725 GCAATCACTCATGGACTCTTCG 59.393 50.000 0.00 0.00 0.00 3.79
87 88 3.870419 GAGCAATCACTCATGGACTCTTC 59.130 47.826 0.00 0.00 36.65 2.87
88 89 3.518705 AGAGCAATCACTCATGGACTCTT 59.481 43.478 0.00 0.00 39.26 2.85
89 90 3.106054 AGAGCAATCACTCATGGACTCT 58.894 45.455 0.00 0.00 39.26 3.24
90 91 3.540314 AGAGCAATCACTCATGGACTC 57.460 47.619 0.00 0.00 39.26 3.36
91 92 3.771479 TGTAGAGCAATCACTCATGGACT 59.229 43.478 0.00 0.00 39.26 3.85
92 93 4.128925 TGTAGAGCAATCACTCATGGAC 57.871 45.455 0.00 0.00 39.26 4.02
93 94 4.406649 TCATGTAGAGCAATCACTCATGGA 59.593 41.667 0.00 0.00 39.26 3.41
94 95 4.700700 TCATGTAGAGCAATCACTCATGG 58.299 43.478 0.00 0.00 39.26 3.66
95 96 5.908916 CTCATGTAGAGCAATCACTCATG 57.091 43.478 0.00 0.00 39.26 3.07
133 134 9.872721 GCTAACTTACTACTACTCCATTTTCTT 57.127 33.333 0.00 0.00 0.00 2.52
134 135 9.257428 AGCTAACTTACTACTACTCCATTTTCT 57.743 33.333 0.00 0.00 0.00 2.52
137 138 9.471702 TGTAGCTAACTTACTACTACTCCATTT 57.528 33.333 0.00 0.00 39.60 2.32
138 139 9.471702 TTGTAGCTAACTTACTACTACTCCATT 57.528 33.333 0.00 0.00 39.60 3.16
139 140 9.643735 ATTGTAGCTAACTTACTACTACTCCAT 57.356 33.333 0.00 0.00 39.60 3.41
146 147 9.341078 GTCCTCTATTGTAGCTAACTTACTACT 57.659 37.037 0.00 0.00 39.60 2.57
147 148 9.118300 TGTCCTCTATTGTAGCTAACTTACTAC 57.882 37.037 0.00 0.00 39.38 2.73
148 149 9.863650 ATGTCCTCTATTGTAGCTAACTTACTA 57.136 33.333 0.00 0.00 0.00 1.82
149 150 8.634444 CATGTCCTCTATTGTAGCTAACTTACT 58.366 37.037 0.00 0.00 0.00 2.24
150 151 7.868415 CCATGTCCTCTATTGTAGCTAACTTAC 59.132 40.741 0.00 0.00 0.00 2.34
151 152 7.563924 ACCATGTCCTCTATTGTAGCTAACTTA 59.436 37.037 0.00 0.00 0.00 2.24
152 153 6.384305 ACCATGTCCTCTATTGTAGCTAACTT 59.616 38.462 0.00 0.00 0.00 2.66
153 154 5.900123 ACCATGTCCTCTATTGTAGCTAACT 59.100 40.000 0.00 0.00 0.00 2.24
154 155 6.163135 ACCATGTCCTCTATTGTAGCTAAC 57.837 41.667 0.00 0.00 0.00 2.34
155 156 9.769677 ATATACCATGTCCTCTATTGTAGCTAA 57.230 33.333 0.00 0.00 0.00 3.09
156 157 9.190317 CATATACCATGTCCTCTATTGTAGCTA 57.810 37.037 0.00 0.00 0.00 3.32
157 158 7.895962 TCATATACCATGTCCTCTATTGTAGCT 59.104 37.037 0.00 0.00 0.00 3.32
158 159 8.067751 TCATATACCATGTCCTCTATTGTAGC 57.932 38.462 0.00 0.00 0.00 3.58
160 161 8.903820 CGATCATATACCATGTCCTCTATTGTA 58.096 37.037 0.00 0.00 0.00 2.41
161 162 7.397476 ACGATCATATACCATGTCCTCTATTGT 59.603 37.037 0.00 0.00 0.00 2.71
162 163 7.776107 ACGATCATATACCATGTCCTCTATTG 58.224 38.462 0.00 0.00 0.00 1.90
163 164 7.962995 ACGATCATATACCATGTCCTCTATT 57.037 36.000 0.00 0.00 0.00 1.73
164 165 8.275758 ACTACGATCATATACCATGTCCTCTAT 58.724 37.037 0.00 0.00 0.00 1.98
165 166 7.631007 ACTACGATCATATACCATGTCCTCTA 58.369 38.462 0.00 0.00 0.00 2.43
166 167 6.486056 ACTACGATCATATACCATGTCCTCT 58.514 40.000 0.00 0.00 0.00 3.69
167 168 6.600032 AGACTACGATCATATACCATGTCCTC 59.400 42.308 0.00 0.00 0.00 3.71
168 169 6.486056 AGACTACGATCATATACCATGTCCT 58.514 40.000 0.00 0.00 0.00 3.85
169 170 6.761099 AGACTACGATCATATACCATGTCC 57.239 41.667 0.00 0.00 0.00 4.02
170 171 7.539022 CACAAGACTACGATCATATACCATGTC 59.461 40.741 0.00 0.00 0.00 3.06
171 172 7.371159 CACAAGACTACGATCATATACCATGT 58.629 38.462 0.00 0.00 0.00 3.21
172 173 6.808704 CCACAAGACTACGATCATATACCATG 59.191 42.308 0.00 0.00 0.00 3.66
173 174 6.719829 TCCACAAGACTACGATCATATACCAT 59.280 38.462 0.00 0.00 0.00 3.55
174 175 6.066032 TCCACAAGACTACGATCATATACCA 58.934 40.000 0.00 0.00 0.00 3.25
175 176 6.570672 TCCACAAGACTACGATCATATACC 57.429 41.667 0.00 0.00 0.00 2.73
176 177 6.087522 GCTCCACAAGACTACGATCATATAC 58.912 44.000 0.00 0.00 0.00 1.47
190 191 1.982395 ATCGTCCGGCTCCACAAGA 60.982 57.895 0.00 0.00 0.00 3.02
201 202 1.860950 GTCACATTCATCCATCGTCCG 59.139 52.381 0.00 0.00 0.00 4.79
203 204 2.609459 GGTGTCACATTCATCCATCGTC 59.391 50.000 5.12 0.00 0.00 4.20
205 206 1.594397 CGGTGTCACATTCATCCATCG 59.406 52.381 5.12 0.00 0.00 3.84
215 216 1.377202 GGCATGGACGGTGTCACAT 60.377 57.895 5.12 0.00 33.68 3.21
217 218 1.302511 AAGGCATGGACGGTGTCAC 60.303 57.895 0.00 0.00 33.68 3.67
219 220 1.302511 ACAAGGCATGGACGGTGTC 60.303 57.895 0.00 0.00 0.00 3.67
220 221 1.600636 CACAAGGCATGGACGGTGT 60.601 57.895 0.00 0.00 0.00 4.16
222 223 2.034066 CCACAAGGCATGGACGGT 59.966 61.111 0.00 0.00 39.87 4.83
230 231 1.555075 GTCATCTAGGACCACAAGGCA 59.445 52.381 0.00 0.00 39.06 4.75
253 254 1.894466 TCGAACCGTATCCTTTCCACA 59.106 47.619 0.00 0.00 0.00 4.17
290 291 2.586425 TGGGCTCCAACTTTGAAGAAG 58.414 47.619 0.00 0.00 0.00 2.85
296 299 0.681175 CCCTTTGGGCTCCAACTTTG 59.319 55.000 6.19 0.00 43.82 2.77
360 363 9.403110 GTGTCGTCCAATTATCGTTTACTATAT 57.597 33.333 0.00 0.00 0.00 0.86
361 364 7.862372 GGTGTCGTCCAATTATCGTTTACTATA 59.138 37.037 0.00 0.00 0.00 1.31
379 382 0.949105 ATGGTTGCTTCGGTGTCGTC 60.949 55.000 0.00 0.00 37.69 4.20
384 387 2.480555 GCGATGGTTGCTTCGGTG 59.519 61.111 0.00 0.00 35.93 4.94
400 403 2.202932 ATGCTCGACATGTCCCGC 60.203 61.111 20.03 20.61 37.70 6.13
401 404 1.946156 CGATGCTCGACATGTCCCG 60.946 63.158 20.03 10.38 43.74 5.14
417 420 1.358725 GCTTGTTGATAGTGCCGCGA 61.359 55.000 8.23 0.00 0.00 5.87
428 431 8.991026 CATTCCATTTCAAAATAAGCTTGTTGA 58.009 29.630 9.86 12.85 0.00 3.18
435 438 7.922811 CCTCCTACATTCCATTTCAAAATAAGC 59.077 37.037 0.00 0.00 0.00 3.09
436 439 7.922811 GCCTCCTACATTCCATTTCAAAATAAG 59.077 37.037 0.00 0.00 0.00 1.73
439 442 5.129320 GGCCTCCTACATTCCATTTCAAAAT 59.871 40.000 0.00 0.00 0.00 1.82
446 449 1.496429 CCTGGCCTCCTACATTCCATT 59.504 52.381 3.32 0.00 0.00 3.16
450 453 3.926058 TTTACCTGGCCTCCTACATTC 57.074 47.619 3.32 0.00 0.00 2.67
452 455 2.092375 GCTTTTACCTGGCCTCCTACAT 60.092 50.000 3.32 0.00 0.00 2.29
454 457 1.408405 GGCTTTTACCTGGCCTCCTAC 60.408 57.143 3.32 0.00 42.31 3.18
455 458 0.916809 GGCTTTTACCTGGCCTCCTA 59.083 55.000 3.32 0.00 42.31 2.94
456 459 1.691823 GGCTTTTACCTGGCCTCCT 59.308 57.895 3.32 0.00 42.31 3.69
457 460 1.749258 CGGCTTTTACCTGGCCTCC 60.749 63.158 3.32 0.00 43.29 4.30
472 475 0.517316 ATTTGTCTTCGAGCAACGGC 59.483 50.000 3.74 0.00 42.82 5.68
473 476 4.600012 AATATTTGTCTTCGAGCAACGG 57.400 40.909 3.74 0.00 42.82 4.44
475 478 4.260656 CGCAAATATTTGTCTTCGAGCAAC 59.739 41.667 25.15 6.92 40.24 4.17
479 482 5.858475 ACTTCGCAAATATTTGTCTTCGAG 58.142 37.500 25.15 19.09 40.24 4.04
480 483 5.856126 ACTTCGCAAATATTTGTCTTCGA 57.144 34.783 25.15 21.58 40.24 3.71
487 490 5.263185 CCTCGGTTACTTCGCAAATATTTG 58.737 41.667 21.54 21.54 41.03 2.32
489 492 3.875134 CCCTCGGTTACTTCGCAAATATT 59.125 43.478 0.00 0.00 0.00 1.28
490 493 3.133362 TCCCTCGGTTACTTCGCAAATAT 59.867 43.478 0.00 0.00 0.00 1.28
491 494 2.496871 TCCCTCGGTTACTTCGCAAATA 59.503 45.455 0.00 0.00 0.00 1.40
494 497 0.037975 GTCCCTCGGTTACTTCGCAA 60.038 55.000 0.00 0.00 0.00 4.85
495 498 0.896940 AGTCCCTCGGTTACTTCGCA 60.897 55.000 0.00 0.00 0.00 5.10
496 499 0.179142 GAGTCCCTCGGTTACTTCGC 60.179 60.000 0.00 0.00 0.00 4.70
507 510 0.964358 TTCTTCGTCCCGAGTCCCTC 60.964 60.000 0.00 0.00 37.14 4.30
508 511 0.966370 CTTCTTCGTCCCGAGTCCCT 60.966 60.000 0.00 0.00 37.14 4.20
509 512 0.964358 TCTTCTTCGTCCCGAGTCCC 60.964 60.000 0.00 0.00 37.14 4.46
510 513 0.886563 TTCTTCTTCGTCCCGAGTCC 59.113 55.000 0.00 0.00 37.14 3.85
511 514 2.719426 TTTCTTCTTCGTCCCGAGTC 57.281 50.000 0.00 0.00 37.14 3.36
512 515 2.561419 TCATTTCTTCTTCGTCCCGAGT 59.439 45.455 0.00 0.00 37.14 4.18
513 516 3.232213 TCATTTCTTCTTCGTCCCGAG 57.768 47.619 0.00 0.00 37.14 4.63
514 517 3.323243 GTTCATTTCTTCTTCGTCCCGA 58.677 45.455 0.00 0.00 0.00 5.14
515 518 2.415512 GGTTCATTTCTTCTTCGTCCCG 59.584 50.000 0.00 0.00 0.00 5.14
516 519 3.188667 GTGGTTCATTTCTTCTTCGTCCC 59.811 47.826 0.00 0.00 0.00 4.46
517 520 3.188667 GGTGGTTCATTTCTTCTTCGTCC 59.811 47.826 0.00 0.00 0.00 4.79
518 521 4.065789 AGGTGGTTCATTTCTTCTTCGTC 58.934 43.478 0.00 0.00 0.00 4.20
519 522 4.065789 GAGGTGGTTCATTTCTTCTTCGT 58.934 43.478 0.00 0.00 0.00 3.85
520 523 3.437049 GGAGGTGGTTCATTTCTTCTTCG 59.563 47.826 0.00 0.00 0.00 3.79
525 528 2.158475 TGCTGGAGGTGGTTCATTTCTT 60.158 45.455 0.00 0.00 0.00 2.52
532 535 1.834263 AGATAGTGCTGGAGGTGGTTC 59.166 52.381 0.00 0.00 0.00 3.62
535 538 2.968574 ACATAGATAGTGCTGGAGGTGG 59.031 50.000 0.00 0.00 0.00 4.61
538 541 6.708054 CCTTTTTACATAGATAGTGCTGGAGG 59.292 42.308 0.00 0.00 0.00 4.30
543 546 7.792032 TGCTACCTTTTTACATAGATAGTGCT 58.208 34.615 0.00 0.00 0.00 4.40
544 547 7.711339 ACTGCTACCTTTTTACATAGATAGTGC 59.289 37.037 0.00 0.00 0.00 4.40
579 582 2.031191 ACATTATTTTTACCGGCGCTCG 59.969 45.455 7.64 9.53 38.88 5.03
580 583 3.359654 CACATTATTTTTACCGGCGCTC 58.640 45.455 7.64 0.00 0.00 5.03
584 587 2.849473 CGTGCACATTATTTTTACCGGC 59.151 45.455 18.64 0.00 0.00 6.13
622 625 3.564225 GGAAAATGAAGACACGACTTGGT 59.436 43.478 0.00 0.00 0.00 3.67
629 632 2.546368 TCAACCGGAAAATGAAGACACG 59.454 45.455 9.46 0.00 0.00 4.49
659 662 3.476552 TGGATGCGGATGGTAAAGAATC 58.523 45.455 0.00 0.00 0.00 2.52
690 693 2.531522 AAATGTTCTTGGCAGTTGGC 57.468 45.000 0.00 0.00 43.74 4.52
691 694 3.181467 TGGAAAATGTTCTTGGCAGTTGG 60.181 43.478 0.00 0.00 33.92 3.77
692 695 4.053295 CTGGAAAATGTTCTTGGCAGTTG 58.947 43.478 0.00 0.00 33.92 3.16
693 696 3.070015 CCTGGAAAATGTTCTTGGCAGTT 59.930 43.478 0.00 0.00 33.92 3.16
694 697 2.629617 CCTGGAAAATGTTCTTGGCAGT 59.370 45.455 0.00 0.00 33.92 4.40
695 698 2.028748 CCCTGGAAAATGTTCTTGGCAG 60.029 50.000 0.00 0.00 33.92 4.85
696 699 1.969923 CCCTGGAAAATGTTCTTGGCA 59.030 47.619 0.00 0.00 33.92 4.92
697 700 1.970640 ACCCTGGAAAATGTTCTTGGC 59.029 47.619 0.00 0.00 33.92 4.52
698 701 5.799827 TTTACCCTGGAAAATGTTCTTGG 57.200 39.130 0.00 0.00 33.92 3.61
699 702 6.650390 CCATTTTACCCTGGAAAATGTTCTTG 59.350 38.462 22.13 10.30 46.12 3.02
700 703 6.744056 GCCATTTTACCCTGGAAAATGTTCTT 60.744 38.462 22.13 0.00 46.12 2.52
701 704 5.279960 GCCATTTTACCCTGGAAAATGTTCT 60.280 40.000 22.13 0.00 46.12 3.01
702 705 4.935205 GCCATTTTACCCTGGAAAATGTTC 59.065 41.667 22.13 14.43 46.12 3.18
703 706 4.263287 GGCCATTTTACCCTGGAAAATGTT 60.263 41.667 22.13 0.00 46.12 2.71
704 707 3.263170 GGCCATTTTACCCTGGAAAATGT 59.737 43.478 22.13 5.60 46.12 2.71
705 708 3.678529 CGGCCATTTTACCCTGGAAAATG 60.679 47.826 19.27 19.27 46.68 2.32
706 709 2.499693 CGGCCATTTTACCCTGGAAAAT 59.500 45.455 2.24 0.00 37.04 1.82
707 710 1.896465 CGGCCATTTTACCCTGGAAAA 59.104 47.619 2.24 0.00 34.24 2.29
708 711 1.203075 ACGGCCATTTTACCCTGGAAA 60.203 47.619 2.24 0.00 34.24 3.13
709 712 0.406361 ACGGCCATTTTACCCTGGAA 59.594 50.000 2.24 0.00 34.24 3.53
710 713 0.034863 GACGGCCATTTTACCCTGGA 60.035 55.000 2.24 0.00 34.24 3.86
711 714 1.373590 CGACGGCCATTTTACCCTGG 61.374 60.000 2.24 0.00 35.53 4.45
712 715 1.988834 GCGACGGCCATTTTACCCTG 61.989 60.000 2.24 0.00 0.00 4.45
713 716 1.747745 GCGACGGCCATTTTACCCT 60.748 57.895 2.24 0.00 0.00 4.34
714 717 1.381165 ATGCGACGGCCATTTTACCC 61.381 55.000 2.24 0.00 38.85 3.69
715 718 0.454196 AATGCGACGGCCATTTTACC 59.546 50.000 2.24 0.00 38.85 2.85
716 719 1.917303 CAAATGCGACGGCCATTTTAC 59.083 47.619 13.14 0.00 38.85 2.01
717 720 1.135257 CCAAATGCGACGGCCATTTTA 60.135 47.619 13.14 0.00 38.85 1.52
718 721 0.389687 CCAAATGCGACGGCCATTTT 60.390 50.000 13.14 0.00 38.85 1.82
719 722 1.215117 CCAAATGCGACGGCCATTT 59.785 52.632 2.24 10.76 38.85 2.32
720 723 1.247419 TTCCAAATGCGACGGCCATT 61.247 50.000 2.24 0.00 38.85 3.16
721 724 1.037030 ATTCCAAATGCGACGGCCAT 61.037 50.000 2.24 0.00 38.85 4.40
722 725 1.247419 AATTCCAAATGCGACGGCCA 61.247 50.000 2.24 0.00 38.85 5.36
723 726 0.108851 AAATTCCAAATGCGACGGCC 60.109 50.000 0.00 0.00 38.85 6.13
724 727 1.389784 CAAAATTCCAAATGCGACGGC 59.610 47.619 0.00 0.00 40.52 5.68
725 728 2.940147 TCAAAATTCCAAATGCGACGG 58.060 42.857 0.00 0.00 0.00 4.79
726 729 5.514059 AAATCAAAATTCCAAATGCGACG 57.486 34.783 0.00 0.00 0.00 5.12
727 730 7.351223 TGAAAAATCAAAATTCCAAATGCGAC 58.649 30.769 0.00 0.00 0.00 5.19
728 731 7.440556 TCTGAAAAATCAAAATTCCAAATGCGA 59.559 29.630 0.00 0.00 0.00 5.10
729 732 7.574496 TCTGAAAAATCAAAATTCCAAATGCG 58.426 30.769 0.00 0.00 0.00 4.73
730 733 8.562052 ACTCTGAAAAATCAAAATTCCAAATGC 58.438 29.630 0.00 0.00 0.00 3.56
731 734 9.872757 CACTCTGAAAAATCAAAATTCCAAATG 57.127 29.630 0.00 0.00 0.00 2.32
732 735 9.059260 CCACTCTGAAAAATCAAAATTCCAAAT 57.941 29.630 0.00 0.00 0.00 2.32
733 736 8.046107 ACCACTCTGAAAAATCAAAATTCCAAA 58.954 29.630 0.00 0.00 0.00 3.28
734 737 7.563906 ACCACTCTGAAAAATCAAAATTCCAA 58.436 30.769 0.00 0.00 0.00 3.53
735 738 7.123355 ACCACTCTGAAAAATCAAAATTCCA 57.877 32.000 0.00 0.00 0.00 3.53
736 739 7.329471 GCTACCACTCTGAAAAATCAAAATTCC 59.671 37.037 0.00 0.00 0.00 3.01
737 740 7.329471 GGCTACCACTCTGAAAAATCAAAATTC 59.671 37.037 0.00 0.00 0.00 2.17
738 741 7.154656 GGCTACCACTCTGAAAAATCAAAATT 58.845 34.615 0.00 0.00 0.00 1.82
739 742 6.570378 CGGCTACCACTCTGAAAAATCAAAAT 60.570 38.462 0.00 0.00 0.00 1.82
740 743 5.278266 CGGCTACCACTCTGAAAAATCAAAA 60.278 40.000 0.00 0.00 0.00 2.44
741 744 4.215399 CGGCTACCACTCTGAAAAATCAAA 59.785 41.667 0.00 0.00 0.00 2.69
742 745 3.751175 CGGCTACCACTCTGAAAAATCAA 59.249 43.478 0.00 0.00 0.00 2.57
743 746 3.007506 TCGGCTACCACTCTGAAAAATCA 59.992 43.478 0.00 0.00 0.00 2.57
744 747 3.596214 TCGGCTACCACTCTGAAAAATC 58.404 45.455 0.00 0.00 0.00 2.17
745 748 3.260884 TCTCGGCTACCACTCTGAAAAAT 59.739 43.478 0.00 0.00 0.00 1.82
746 749 2.631062 TCTCGGCTACCACTCTGAAAAA 59.369 45.455 0.00 0.00 0.00 1.94
747 750 2.231478 CTCTCGGCTACCACTCTGAAAA 59.769 50.000 0.00 0.00 0.00 2.29
748 751 1.819288 CTCTCGGCTACCACTCTGAAA 59.181 52.381 0.00 0.00 0.00 2.69
749 752 1.464734 CTCTCGGCTACCACTCTGAA 58.535 55.000 0.00 0.00 0.00 3.02
750 753 0.394488 CCTCTCGGCTACCACTCTGA 60.394 60.000 0.00 0.00 0.00 3.27
751 754 0.394488 TCCTCTCGGCTACCACTCTG 60.394 60.000 0.00 0.00 0.00 3.35
752 755 0.106918 CTCCTCTCGGCTACCACTCT 60.107 60.000 0.00 0.00 0.00 3.24
753 756 1.104577 CCTCCTCTCGGCTACCACTC 61.105 65.000 0.00 0.00 0.00 3.51
754 757 1.076632 CCTCCTCTCGGCTACCACT 60.077 63.158 0.00 0.00 0.00 4.00
755 758 2.128507 CCCTCCTCTCGGCTACCAC 61.129 68.421 0.00 0.00 0.00 4.16
756 759 2.279073 CCCTCCTCTCGGCTACCA 59.721 66.667 0.00 0.00 0.00 3.25
757 760 3.228017 GCCCTCCTCTCGGCTACC 61.228 72.222 0.00 0.00 42.21 3.18
758 761 3.597728 CGCCCTCCTCTCGGCTAC 61.598 72.222 0.00 0.00 43.38 3.58
759 762 4.896829 CCGCCCTCCTCTCGGCTA 62.897 72.222 0.00 0.00 43.38 3.93
775 778 0.741221 CTTTCCACTCTACGGCAGCC 60.741 60.000 0.00 0.00 0.00 4.85
776 779 0.037232 ACTTTCCACTCTACGGCAGC 60.037 55.000 0.00 0.00 0.00 5.25
777 780 1.000955 ACACTTTCCACTCTACGGCAG 59.999 52.381 0.00 0.00 0.00 4.85
778 781 1.045407 ACACTTTCCACTCTACGGCA 58.955 50.000 0.00 0.00 0.00 5.69
779 782 1.798813 CAACACTTTCCACTCTACGGC 59.201 52.381 0.00 0.00 0.00 5.68
780 783 2.224209 ACCAACACTTTCCACTCTACGG 60.224 50.000 0.00 0.00 0.00 4.02
781 784 3.107642 ACCAACACTTTCCACTCTACG 57.892 47.619 0.00 0.00 0.00 3.51
829 832 1.608025 CGCTCCAGCTTTTCACCAGTA 60.608 52.381 0.00 0.00 39.32 2.74
831 834 1.871772 CGCTCCAGCTTTTCACCAG 59.128 57.895 0.00 0.00 39.32 4.00
832 835 2.260869 GCGCTCCAGCTTTTCACCA 61.261 57.895 0.00 0.00 39.32 4.17
833 836 2.563427 GCGCTCCAGCTTTTCACC 59.437 61.111 0.00 0.00 39.32 4.02
835 838 2.672996 GGGCGCTCCAGCTTTTCA 60.673 61.111 7.64 0.00 39.32 2.69
844 856 0.179111 GGCTTTTAAATGGGCGCTCC 60.179 55.000 3.94 6.36 0.00 4.70
893 906 0.105709 CTCTTGGGTTGGGTTGGGTT 60.106 55.000 0.00 0.00 0.00 4.11
901 914 0.179020 TGTGTGCTCTCTTGGGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
903 916 0.109342 CCTGTGTGCTCTCTTGGGTT 59.891 55.000 0.00 0.00 0.00 4.11
907 920 1.673665 GGCCCTGTGTGCTCTCTTG 60.674 63.158 0.00 0.00 0.00 3.02
908 921 1.835927 GAGGCCCTGTGTGCTCTCTT 61.836 60.000 0.00 0.00 0.00 2.85
909 922 2.203907 AGGCCCTGTGTGCTCTCT 60.204 61.111 0.00 0.00 0.00 3.10
910 923 2.237534 GAGAGGCCCTGTGTGCTCTC 62.238 65.000 0.00 0.00 0.00 3.20
911 924 2.203907 AGAGGCCCTGTGTGCTCT 60.204 61.111 0.00 0.00 0.00 4.09
915 928 1.896694 GAGAGAGAGGCCCTGTGTG 59.103 63.158 0.00 0.00 0.00 3.82
1164 1218 3.066190 TACACCGCCTCCTCCGTG 61.066 66.667 0.00 0.00 0.00 4.94
1405 1488 1.063806 GTTGCAGAGTAGTGAGTGCG 58.936 55.000 0.00 0.00 38.84 5.34
1406 1489 2.029470 AGAGTTGCAGAGTAGTGAGTGC 60.029 50.000 0.00 0.00 36.42 4.40
1476 1565 4.657075 ACGGTTAAATTACTCGTTGCAG 57.343 40.909 0.00 0.00 0.00 4.41
1503 1592 6.120812 CGAACGATCTTTTATTTGTCGATCC 58.879 40.000 0.00 0.00 36.28 3.36
1504 1593 6.619854 CACGAACGATCTTTTATTTGTCGATC 59.380 38.462 0.14 0.00 36.28 3.69
1508 1598 9.916397 AATATCACGAACGATCTTTTATTTGTC 57.084 29.630 0.14 0.00 0.00 3.18
1511 1601 9.104965 TGGAATATCACGAACGATCTTTTATTT 57.895 29.630 0.14 0.00 0.00 1.40
1605 1710 0.177604 CTGCCTGACAGTCATCCTCC 59.822 60.000 2.97 0.00 41.86 4.30
1632 1738 3.069443 ACTCTAGATAAGCTTCAGGCAGC 59.931 47.826 0.00 0.00 44.79 5.25
1633 1739 4.584325 AGACTCTAGATAAGCTTCAGGCAG 59.416 45.833 0.00 0.00 44.79 4.85
1634 1740 4.541705 AGACTCTAGATAAGCTTCAGGCA 58.458 43.478 0.00 0.00 44.79 4.75
1672 1778 3.242284 CGGCTTTTATATCCGTGTGTGTG 60.242 47.826 0.00 0.00 38.47 3.82
1676 1782 3.121279 CGATCGGCTTTTATATCCGTGTG 59.879 47.826 7.38 0.00 43.35 3.82
1720 1830 1.150536 ACCCACGTGCACCATCTTT 59.849 52.632 10.91 0.00 0.00 2.52
1788 1898 2.557490 GACGACTAACTGAACACTCCCT 59.443 50.000 0.00 0.00 0.00 4.20
1790 1900 2.295349 TGGACGACTAACTGAACACTCC 59.705 50.000 0.00 0.00 0.00 3.85
1791 1901 3.306818 GTGGACGACTAACTGAACACTC 58.693 50.000 0.00 0.00 0.00 3.51
1792 1902 2.287427 CGTGGACGACTAACTGAACACT 60.287 50.000 0.00 0.00 43.02 3.55
1793 1903 2.049228 CGTGGACGACTAACTGAACAC 58.951 52.381 0.00 0.00 43.02 3.32
1794 1904 1.677576 ACGTGGACGACTAACTGAACA 59.322 47.619 6.12 0.00 43.02 3.18
1797 1907 0.514255 CGACGTGGACGACTAACTGA 59.486 55.000 6.12 0.00 43.02 3.41
1798 1908 1.063951 GCGACGTGGACGACTAACTG 61.064 60.000 6.12 0.00 43.02 3.16
1799 1909 1.208614 GCGACGTGGACGACTAACT 59.791 57.895 6.12 0.00 43.02 2.24
1800 1910 2.142239 CGCGACGTGGACGACTAAC 61.142 63.158 0.00 0.00 43.02 2.34
1801 1911 2.174107 CGCGACGTGGACGACTAA 59.826 61.111 0.00 0.00 43.02 2.24
1802 1912 3.792047 CCGCGACGTGGACGACTA 61.792 66.667 22.98 0.00 43.02 2.59
1807 1917 4.446413 AATCCCCGCGACGTGGAC 62.446 66.667 28.52 0.00 36.09 4.02
1808 1918 4.444838 CAATCCCCGCGACGTGGA 62.445 66.667 28.52 16.14 37.85 4.02
1809 1919 4.444838 TCAATCCCCGCGACGTGG 62.445 66.667 20.61 20.61 0.00 4.94
1811 1921 2.642254 TTCTCAATCCCCGCGACGT 61.642 57.895 8.23 0.00 0.00 4.34
1812 1922 2.165301 GTTCTCAATCCCCGCGACG 61.165 63.158 8.23 0.00 0.00 5.12
1813 1923 1.814169 GGTTCTCAATCCCCGCGAC 60.814 63.158 8.23 0.00 0.00 5.19
1814 1924 2.287274 TGGTTCTCAATCCCCGCGA 61.287 57.895 8.23 0.00 0.00 5.87
1815 1925 2.106683 GTGGTTCTCAATCCCCGCG 61.107 63.158 0.00 0.00 0.00 6.46
1816 1926 1.026718 CAGTGGTTCTCAATCCCCGC 61.027 60.000 0.00 0.00 0.00 6.13
1817 1927 0.392998 CCAGTGGTTCTCAATCCCCG 60.393 60.000 0.00 0.00 0.00 5.73
1818 1928 0.698818 ACCAGTGGTTCTCAATCCCC 59.301 55.000 9.70 0.00 27.29 4.81
1819 1929 1.351017 TCACCAGTGGTTCTCAATCCC 59.649 52.381 13.62 0.00 31.02 3.85
1820 1930 2.859165 TCACCAGTGGTTCTCAATCC 57.141 50.000 13.62 0.00 31.02 3.01
1821 1931 8.682936 ATTAATATCACCAGTGGTTCTCAATC 57.317 34.615 13.62 0.00 31.02 2.67
1862 1972 2.033141 CATGCCTAGCCCCATCCG 59.967 66.667 0.00 0.00 0.00 4.18
1869 1979 1.376609 CCGACCAAACATGCCTAGCC 61.377 60.000 0.00 0.00 0.00 3.93
1870 1980 1.376609 CCCGACCAAACATGCCTAGC 61.377 60.000 0.00 0.00 0.00 3.42
1871 1981 0.035439 ACCCGACCAAACATGCCTAG 60.035 55.000 0.00 0.00 0.00 3.02
1872 1982 0.402504 AACCCGACCAAACATGCCTA 59.597 50.000 0.00 0.00 0.00 3.93
1876 1986 1.313772 TGTCAACCCGACCAAACATG 58.686 50.000 0.00 0.00 44.71 3.21
1877 1987 1.885887 CATGTCAACCCGACCAAACAT 59.114 47.619 0.00 0.00 44.71 2.71
1878 1988 1.134068 TCATGTCAACCCGACCAAACA 60.134 47.619 0.00 0.00 44.71 2.83
1880 1990 2.158559 CATCATGTCAACCCGACCAAA 58.841 47.619 0.00 0.00 44.71 3.28
1881 1991 1.073125 ACATCATGTCAACCCGACCAA 59.927 47.619 0.00 0.00 44.71 3.67
1886 2016 1.066215 TCTCCACATCATGTCAACCCG 60.066 52.381 0.00 0.00 0.00 5.28
1945 2075 9.635404 TGGAAAAAGGAGAACAAAACTAGAATA 57.365 29.630 0.00 0.00 0.00 1.75
1946 2076 8.414003 GTGGAAAAAGGAGAACAAAACTAGAAT 58.586 33.333 0.00 0.00 0.00 2.40
1947 2077 7.614192 AGTGGAAAAAGGAGAACAAAACTAGAA 59.386 33.333 0.00 0.00 0.00 2.10
1949 2079 7.334844 AGTGGAAAAAGGAGAACAAAACTAG 57.665 36.000 0.00 0.00 0.00 2.57
1952 2082 5.580691 CCAAGTGGAAAAAGGAGAACAAAAC 59.419 40.000 0.00 0.00 37.39 2.43
1982 2117 8.905660 ATAGAGGATGATTTCTCACAAGATTG 57.094 34.615 0.00 0.00 33.22 2.67
1983 2118 9.339850 CAATAGAGGATGATTTCTCACAAGATT 57.660 33.333 0.00 0.00 33.22 2.40
2010 2145 9.551734 CAGATGAGATCCTATCTAGACTCATAG 57.448 40.741 16.89 11.24 42.51 2.23
2017 2152 8.955388 CGATTTTCAGATGAGATCCTATCTAGA 58.045 37.037 8.52 0.00 40.38 2.43
2021 2156 8.469200 AGATCGATTTTCAGATGAGATCCTATC 58.531 37.037 0.00 0.00 35.07 2.08
2023 2158 7.773489 AGATCGATTTTCAGATGAGATCCTA 57.227 36.000 0.00 0.00 35.07 2.94
2024 2159 6.669125 AGATCGATTTTCAGATGAGATCCT 57.331 37.500 0.00 0.00 35.07 3.24
2025 2160 7.727331 AAAGATCGATTTTCAGATGAGATCC 57.273 36.000 0.00 0.00 35.07 3.36
2028 2163 8.206867 ACCATAAAGATCGATTTTCAGATGAGA 58.793 33.333 14.62 0.00 0.00 3.27
2031 2166 8.375608 AGACCATAAAGATCGATTTTCAGATG 57.624 34.615 0.00 5.45 0.00 2.90
2032 2167 8.970859 AAGACCATAAAGATCGATTTTCAGAT 57.029 30.769 0.00 0.00 0.00 2.90
2035 2170 9.667107 ACTAAAGACCATAAAGATCGATTTTCA 57.333 29.630 0.00 0.00 0.00 2.69
2040 2208 9.535878 GAGAAACTAAAGACCATAAAGATCGAT 57.464 33.333 0.00 0.00 0.00 3.59
2045 2213 8.647796 TCTGTGAGAAACTAAAGACCATAAAGA 58.352 33.333 0.00 0.00 0.00 2.52
2046 2214 8.833231 TCTGTGAGAAACTAAAGACCATAAAG 57.167 34.615 0.00 0.00 0.00 1.85
2133 2304 5.289595 TGCAATTCAGACGTACCATAGATC 58.710 41.667 0.00 0.00 0.00 2.75
2219 2401 4.748102 GTGGAAAGTGTCAGTTACGAATCA 59.252 41.667 0.00 0.00 0.00 2.57
2247 2429 3.492309 CCTGCACCATACTGCAAAAACAA 60.492 43.478 0.00 0.00 46.46 2.83
2248 2430 2.035704 CCTGCACCATACTGCAAAAACA 59.964 45.455 0.00 0.00 46.46 2.83
2326 2508 1.710816 ATCTCTTCTCCCACCGATCC 58.289 55.000 0.00 0.00 0.00 3.36
2383 2565 3.443925 TCAGAGAGGGCTGCGTCG 61.444 66.667 0.00 0.00 35.86 5.12
2472 2661 6.978674 ATCCAATAACTTCTATCTGACGGA 57.021 37.500 0.00 0.00 0.00 4.69
2507 2732 5.763204 TGAACGGCTGTAAAGAAAAGAGATT 59.237 36.000 0.00 0.00 0.00 2.40
2509 2734 4.699637 TGAACGGCTGTAAAGAAAAGAGA 58.300 39.130 0.00 0.00 0.00 3.10
2527 2752 7.448420 TCATCCCTTCAATCATATCTCTGAAC 58.552 38.462 0.00 0.00 0.00 3.18
2536 2761 4.413189 TCAAGCCTCATCCCTTCAATCATA 59.587 41.667 0.00 0.00 0.00 2.15
2557 2782 4.837093 ATACCTCGATTTCCAAAGGTCA 57.163 40.909 0.00 0.00 41.20 4.02
2580 2805 2.367567 AGGTAAAGCTCGTCAAAGGTCA 59.632 45.455 0.00 0.00 0.00 4.02
2796 3021 4.160329 ACTTACTGAGACAGGAATCCACA 58.840 43.478 0.61 0.00 33.45 4.17
2800 3025 6.231211 TCCAAAACTTACTGAGACAGGAATC 58.769 40.000 0.00 0.00 33.45 2.52
2908 3216 5.640189 AATACACTAGTCGTAGTTGCAGT 57.360 39.130 0.00 0.00 37.40 4.40
2918 3226 8.967552 ACAAGAAGAGTAAAATACACTAGTCG 57.032 34.615 0.00 0.00 0.00 4.18
2936 3244 7.055667 TGGTTAGCCTGATAGATACAAGAAG 57.944 40.000 0.00 0.00 35.27 2.85
2937 3245 7.272978 GTTGGTTAGCCTGATAGATACAAGAA 58.727 38.462 0.00 0.00 35.27 2.52
3205 3513 2.223665 CGCAGAGTCTAGATGCATGACA 60.224 50.000 2.46 0.00 39.97 3.58
3299 3607 4.957684 TTCTTATTTTCCCCCGCAAAAA 57.042 36.364 0.00 0.00 0.00 1.94
3300 3608 4.957684 TTTCTTATTTTCCCCCGCAAAA 57.042 36.364 0.00 0.00 0.00 2.44
3301 3609 4.957684 TTTTCTTATTTTCCCCCGCAAA 57.042 36.364 0.00 0.00 0.00 3.68
3469 3777 3.440415 GCCTTGCCCACGTAAGCC 61.440 66.667 6.53 0.00 45.62 4.35
3472 3780 1.669760 CTTCGCCTTGCCCACGTAA 60.670 57.895 0.00 0.00 0.00 3.18
3496 3804 3.138798 GCCGCCGGTAGAGACAGA 61.139 66.667 4.45 0.00 0.00 3.41
3544 3852 3.135994 CAGGATTGCTTTGCTTTGCTTT 58.864 40.909 0.00 0.00 0.00 3.51
3674 3982 2.428171 CCCTTGACCTAAATACCGACGA 59.572 50.000 0.00 0.00 0.00 4.20
3676 3984 3.790091 GTCCCTTGACCTAAATACCGAC 58.210 50.000 0.00 0.00 35.34 4.79
3711 4019 4.570772 GTGTTTCAGACTTTCAGTACAGCA 59.429 41.667 0.00 0.00 0.00 4.41
3721 4029 7.065443 GTGGTAGTAACAAGTGTTTCAGACTTT 59.935 37.037 1.35 0.00 39.31 2.66
3740 4048 4.974645 TTTGATTCTCCACTGTGGTAGT 57.025 40.909 25.15 12.27 41.36 2.73
3842 4157 3.055240 AGAGAAGGATTTGCAGAGGTGAG 60.055 47.826 0.00 0.00 0.00 3.51
3861 4176 7.442656 TGTTAGTCTCTAACCAAAAAGGAGAG 58.557 38.462 14.41 0.00 38.91 3.20
3877 4192 6.578023 AGTATGCCTGAAGATTGTTAGTCTC 58.422 40.000 0.00 0.00 0.00 3.36
3905 4220 0.822164 TGTTAGCCTCCTAGCCGAAC 59.178 55.000 0.00 0.00 32.43 3.95
3962 4277 5.523588 TGACTCCCATATCAGAGAAAGTCT 58.476 41.667 5.68 0.00 34.44 3.24
3963 4278 5.362430 ACTGACTCCCATATCAGAGAAAGTC 59.638 44.000 8.18 0.00 44.32 3.01
3964 4279 5.128499 CACTGACTCCCATATCAGAGAAAGT 59.872 44.000 8.18 5.67 44.32 2.66
3967 4282 3.963374 CCACTGACTCCCATATCAGAGAA 59.037 47.826 8.18 0.00 44.32 2.87
3968 4283 3.052566 ACCACTGACTCCCATATCAGAGA 60.053 47.826 8.18 0.00 44.32 3.10
3969 4284 3.069300 CACCACTGACTCCCATATCAGAG 59.931 52.174 8.18 0.40 44.32 3.35
3970 4285 3.033909 CACCACTGACTCCCATATCAGA 58.966 50.000 8.18 0.00 44.32 3.27
4031 4366 5.094260 TTCAAGATGAACTCCGTTTACCGG 61.094 45.833 0.00 0.00 44.14 5.28
4051 4386 3.588842 ACCATCTCCAGTTCCAGAATTCA 59.411 43.478 8.44 0.00 0.00 2.57
4059 4394 0.984230 TCACCACCATCTCCAGTTCC 59.016 55.000 0.00 0.00 0.00 3.62
4067 4402 3.371273 CCAGAACATCATCACCACCATCT 60.371 47.826 0.00 0.00 0.00 2.90
4116 4451 6.470278 TGATGAAGATACTTATGCCAGATGG 58.530 40.000 0.00 0.00 38.53 3.51
4119 4454 9.881649 GATTATGATGAAGATACTTATGCCAGA 57.118 33.333 0.00 0.00 0.00 3.86
4120 4455 9.887629 AGATTATGATGAAGATACTTATGCCAG 57.112 33.333 0.00 0.00 0.00 4.85
4130 4465 9.939802 CCACAAGATGAGATTATGATGAAGATA 57.060 33.333 0.00 0.00 0.00 1.98
4131 4466 8.438373 ACCACAAGATGAGATTATGATGAAGAT 58.562 33.333 0.00 0.00 0.00 2.40
4132 4467 7.713942 CACCACAAGATGAGATTATGATGAAGA 59.286 37.037 0.00 0.00 0.00 2.87
4133 4468 7.713942 TCACCACAAGATGAGATTATGATGAAG 59.286 37.037 0.00 0.00 0.00 3.02
4134 4469 7.567458 TCACCACAAGATGAGATTATGATGAA 58.433 34.615 0.00 0.00 0.00 2.57
4135 4470 7.128234 TCACCACAAGATGAGATTATGATGA 57.872 36.000 0.00 0.00 0.00 2.92
4136 4471 6.427242 CCTCACCACAAGATGAGATTATGATG 59.573 42.308 2.83 0.00 44.32 3.07
4137 4472 6.100859 ACCTCACCACAAGATGAGATTATGAT 59.899 38.462 2.83 0.00 44.32 2.45
4139 4474 5.678583 ACCTCACCACAAGATGAGATTATG 58.321 41.667 2.83 0.00 44.32 1.90
4140 4475 5.664908 AGACCTCACCACAAGATGAGATTAT 59.335 40.000 2.83 0.00 44.32 1.28
4141 4476 5.026121 AGACCTCACCACAAGATGAGATTA 58.974 41.667 2.83 0.00 44.32 1.75
4142 4477 3.843027 AGACCTCACCACAAGATGAGATT 59.157 43.478 2.83 0.00 44.32 2.40
4143 4478 3.197333 CAGACCTCACCACAAGATGAGAT 59.803 47.826 2.83 0.00 44.32 2.75
4144 4479 2.564504 CAGACCTCACCACAAGATGAGA 59.435 50.000 2.83 0.00 44.32 3.27
4145 4480 2.564504 TCAGACCTCACCACAAGATGAG 59.435 50.000 0.00 0.00 41.75 2.90
4188 4531 4.351054 CCACAGGACCACAGGCCC 62.351 72.222 0.00 0.00 0.00 5.80
4204 4547 3.373565 CGTCCAAAAGGGCTGGCC 61.374 66.667 13.15 13.15 36.21 5.36
4206 4549 1.463553 AAAGCGTCCAAAAGGGCTGG 61.464 55.000 0.00 0.00 35.59 4.85
4234 4577 2.258591 GCGAGCAAGGAGACGACA 59.741 61.111 0.00 0.00 0.00 4.35
4371 4722 1.327303 TCCACTTGTCCCATGTTTGC 58.673 50.000 0.00 0.00 0.00 3.68
4431 4782 0.248825 CACGGCAGAATCGAGAGGAG 60.249 60.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.