Multiple sequence alignment - TraesCS5A01G019800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G019800 chr5A 100.000 2631 0 0 1371 4001 16415269 16412639 0.000000e+00 4859
1 TraesCS5A01G019800 chr5A 100.000 1139 0 0 1 1139 16416639 16415501 0.000000e+00 2104
2 TraesCS5A01G019800 chr5A 93.947 1239 72 1 1788 3023 18680395 18681633 0.000000e+00 1869
3 TraesCS5A01G019800 chr5A 77.087 1222 240 30 1786 2986 18679116 18680318 0.000000e+00 669
4 TraesCS5A01G019800 chr5A 80.240 334 32 15 2 324 535225768 535225458 1.870000e-53 220
5 TraesCS5A01G019800 chr5D 96.934 1892 50 3 1371 3254 22796323 22798214 0.000000e+00 3166
6 TraesCS5A01G019800 chr5D 90.006 1641 127 23 1788 3409 27054591 27056213 0.000000e+00 2087
7 TraesCS5A01G019800 chr5D 89.232 1653 127 26 1788 3404 27260510 27258873 0.000000e+00 2019
8 TraesCS5A01G019800 chr5D 96.205 606 19 2 3399 4001 22800943 22801547 0.000000e+00 989
9 TraesCS5A01G019800 chr5D 76.911 1295 256 34 1713 2986 27053242 27054514 0.000000e+00 695
10 TraesCS5A01G019800 chr5D 89.881 336 26 6 1 334 328516991 328516662 3.700000e-115 425
11 TraesCS5A01G019800 chr5D 88.235 255 13 6 899 1139 22795993 22796244 5.060000e-74 289
12 TraesCS5A01G019800 chr5D 94.118 102 6 0 3308 3409 22800810 22800911 5.350000e-34 156
13 TraesCS5A01G019800 chr1B 90.573 1570 110 22 1788 3342 630922268 630920722 0.000000e+00 2045
14 TraesCS5A01G019800 chr1B 76.979 1238 234 39 1786 2995 630923550 630922336 0.000000e+00 660
15 TraesCS5A01G019800 chr4A 95.717 467 15 5 335 801 588511892 588511431 0.000000e+00 747
16 TraesCS5A01G019800 chr7A 94.670 469 20 4 335 802 301639173 301639637 0.000000e+00 723
17 TraesCS5A01G019800 chr7A 84.053 301 30 6 35 334 575338797 575339080 1.420000e-69 274
18 TraesCS5A01G019800 chr7D 94.456 469 24 2 334 801 219836550 219837017 0.000000e+00 721
19 TraesCS5A01G019800 chr7D 94.444 468 20 5 335 802 379317899 379317438 0.000000e+00 715
20 TraesCS5A01G019800 chr7D 83.526 346 23 14 2 334 623765725 623765401 3.910000e-75 292
21 TraesCS5A01G019800 chr7D 79.646 339 27 19 1 334 566126466 566126767 5.240000e-49 206
22 TraesCS5A01G019800 chr3A 94.468 470 23 3 332 800 209407677 209408144 0.000000e+00 721
23 TraesCS5A01G019800 chr6A 94.456 469 23 3 335 802 105536744 105536278 0.000000e+00 719
24 TraesCS5A01G019800 chr3B 94.292 473 21 5 332 802 690854219 690854687 0.000000e+00 719
25 TraesCS5A01G019800 chr2B 94.218 467 23 4 335 800 622642179 622641716 0.000000e+00 710
26 TraesCS5A01G019800 chr2B 94.030 469 24 4 334 801 466215866 466216331 0.000000e+00 708
27 TraesCS5A01G019800 chr1A 88.485 330 24 8 2 328 4386697 4386379 1.740000e-103 387
28 TraesCS5A01G019800 chr2D 72.831 1222 290 35 1786 2982 17830585 17831789 2.920000e-101 379
29 TraesCS5A01G019800 chr2D 75.686 765 163 17 1785 2535 17955196 17955951 1.060000e-95 361
30 TraesCS5A01G019800 chr2D 74.898 737 168 16 1786 2513 18185845 18186573 1.790000e-83 320
31 TraesCS5A01G019800 chr2D 81.081 333 30 20 2 328 146729507 146729812 6.680000e-58 235
32 TraesCS5A01G019800 chr2D 86.818 220 8 8 2 221 29492356 29492554 4.020000e-55 226
33 TraesCS5A01G019800 chr2D 85.561 187 23 3 152 334 42870953 42870767 4.080000e-45 193
34 TraesCS5A01G019800 chr7B 72.445 1223 290 38 1786 2982 643128037 643126836 8.230000e-92 348
35 TraesCS5A01G019800 chr1D 86.527 334 22 10 2 334 482916331 482916020 2.960000e-91 346
36 TraesCS5A01G019800 chr1D 83.481 339 23 16 2 329 269500632 269500948 6.540000e-73 285
37 TraesCS5A01G019800 chr1D 81.020 353 28 19 4 329 361099360 361099020 1.110000e-60 244
38 TraesCS5A01G019800 chr1D 81.065 338 32 18 2 334 455549741 455550051 1.440000e-59 241
39 TraesCS5A01G019800 chr6B 88.055 293 27 6 3410 3698 707976542 707976254 1.380000e-89 340
40 TraesCS5A01G019800 chr6B 80.745 322 37 16 2 320 688158404 688158703 1.120000e-55 228
41 TraesCS5A01G019800 chr6B 79.197 274 38 10 3138 3409 707976834 707976578 5.320000e-39 172
42 TraesCS5A01G019800 chr2A 81.395 344 36 12 1 328 699444469 699444800 5.130000e-64 255
43 TraesCS5A01G019800 chr2A 75.265 283 57 11 2728 3002 50917408 50917685 5.430000e-24 122
44 TraesCS5A01G019800 chr4D 84.360 211 19 4 1 210 450362561 450362364 1.130000e-45 195
45 TraesCS5A01G019800 chr6D 85.088 114 16 1 1786 1899 395371304 395371192 9.090000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G019800 chr5A 16412639 16416639 4000 True 3481.5 4859 100.0000 1 4001 2 chr5A.!!$R2 4000
1 TraesCS5A01G019800 chr5A 18679116 18681633 2517 False 1269.0 1869 85.5170 1786 3023 2 chr5A.!!$F1 1237
2 TraesCS5A01G019800 chr5D 27258873 27260510 1637 True 2019.0 2019 89.2320 1788 3404 1 chr5D.!!$R1 1616
3 TraesCS5A01G019800 chr5D 27053242 27056213 2971 False 1391.0 2087 83.4585 1713 3409 2 chr5D.!!$F2 1696
4 TraesCS5A01G019800 chr5D 22795993 22801547 5554 False 1150.0 3166 93.8730 899 4001 4 chr5D.!!$F1 3102
5 TraesCS5A01G019800 chr1B 630920722 630923550 2828 True 1352.5 2045 83.7760 1786 3342 2 chr1B.!!$R1 1556
6 TraesCS5A01G019800 chr2D 17830585 17831789 1204 False 379.0 379 72.8310 1786 2982 1 chr2D.!!$F1 1196
7 TraesCS5A01G019800 chr2D 17955196 17955951 755 False 361.0 361 75.6860 1785 2535 1 chr2D.!!$F2 750
8 TraesCS5A01G019800 chr2D 18185845 18186573 728 False 320.0 320 74.8980 1786 2513 1 chr2D.!!$F3 727
9 TraesCS5A01G019800 chr7B 643126836 643128037 1201 True 348.0 348 72.4450 1786 2982 1 chr7B.!!$R1 1196
10 TraesCS5A01G019800 chr6B 707976254 707976834 580 True 256.0 340 83.6260 3138 3698 2 chr6B.!!$R1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 726 0.033504 ATAGTAATCGTGCCCTGGCG 59.966 55.0 3.32 0.0 45.51 5.69 F
868 869 0.106918 TTTGGCCAAACGACCTGTCT 60.107 50.0 27.13 0.0 0.00 3.41 F
869 870 0.106918 TTGGCCAAACGACCTGTCTT 60.107 50.0 17.98 0.0 0.00 3.01 F
945 946 0.253894 CCGTCCCGAACCCCTTTTAT 59.746 55.0 0.00 0.0 0.00 1.40 F
1680 1701 1.200519 GGCTCCCTATACACACCACA 58.799 55.0 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2660 3969 0.178953 AATTCCCTTGGTGTGCAGCT 60.179 50.000 0.00 0.0 0.00 4.24 R
2815 4127 4.672862 CGCATCATCGTCAGTAAAGTAGAG 59.327 45.833 0.00 0.0 0.00 2.43 R
2833 4145 5.333339 CCTTATGCACAGTTATGTACGCATC 60.333 44.000 8.82 0.0 42.34 3.91 R
2997 4312 1.064389 GCCTTCTTGAACCAGCCCTAT 60.064 52.381 0.00 0.0 0.00 2.57 R
3269 4601 1.168407 AGCCACACACACACATCAGC 61.168 55.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.069232 CCCGCGTCAAGCAGGAGA 62.069 66.667 4.92 0.00 46.36 3.71
18 19 3.589654 CCCGCGTCAAGCAGGAGAA 62.590 63.158 4.92 0.00 46.36 2.87
21 22 3.882025 CGTCAAGCAGGAGAAGGC 58.118 61.111 0.00 0.00 0.00 4.35
22 23 1.743252 CGTCAAGCAGGAGAAGGCC 60.743 63.158 0.00 0.00 0.00 5.19
23 24 1.743252 GTCAAGCAGGAGAAGGCCG 60.743 63.158 0.00 0.00 0.00 6.13
24 25 1.913262 TCAAGCAGGAGAAGGCCGA 60.913 57.895 0.00 0.00 0.00 5.54
25 26 1.743252 CAAGCAGGAGAAGGCCGAC 60.743 63.158 0.00 0.00 0.00 4.79
26 27 2.217038 AAGCAGGAGAAGGCCGACA 61.217 57.895 0.00 0.00 0.00 4.35
27 28 1.768684 AAGCAGGAGAAGGCCGACAA 61.769 55.000 0.00 0.00 0.00 3.18
28 29 1.078143 GCAGGAGAAGGCCGACAAT 60.078 57.895 0.00 0.00 0.00 2.71
29 30 1.372087 GCAGGAGAAGGCCGACAATG 61.372 60.000 0.00 0.00 0.00 2.82
30 31 0.250234 CAGGAGAAGGCCGACAATGA 59.750 55.000 0.00 0.00 0.00 2.57
31 32 0.250513 AGGAGAAGGCCGACAATGAC 59.749 55.000 0.00 0.00 0.00 3.06
32 33 0.036388 GGAGAAGGCCGACAATGACA 60.036 55.000 0.00 0.00 0.00 3.58
33 34 1.610624 GGAGAAGGCCGACAATGACAA 60.611 52.381 0.00 0.00 0.00 3.18
34 35 1.464997 GAGAAGGCCGACAATGACAAC 59.535 52.381 0.00 0.00 0.00 3.32
35 36 0.165944 GAAGGCCGACAATGACAACG 59.834 55.000 0.00 0.00 0.00 4.10
36 37 1.234615 AAGGCCGACAATGACAACGG 61.235 55.000 0.00 0.00 46.74 4.44
38 39 2.474266 CCGACAATGACAACGGCG 59.526 61.111 4.80 4.80 38.98 6.46
39 40 2.474266 CGACAATGACAACGGCGG 59.526 61.111 13.24 0.00 0.00 6.13
40 41 2.314647 CGACAATGACAACGGCGGT 61.315 57.895 13.24 0.00 0.00 5.68
41 42 1.206578 GACAATGACAACGGCGGTG 59.793 57.895 25.44 25.44 0.00 4.94
42 43 1.225376 GACAATGACAACGGCGGTGA 61.225 55.000 34.02 11.02 0.00 4.02
43 44 1.227999 ACAATGACAACGGCGGTGAG 61.228 55.000 34.02 16.93 0.00 3.51
44 45 1.671054 AATGACAACGGCGGTGAGG 60.671 57.895 34.02 5.35 0.00 3.86
45 46 2.107041 AATGACAACGGCGGTGAGGA 62.107 55.000 34.02 14.80 0.00 3.71
46 47 1.899437 ATGACAACGGCGGTGAGGAT 61.899 55.000 34.02 16.48 0.00 3.24
47 48 2.047274 ACAACGGCGGTGAGGATG 60.047 61.111 34.02 3.52 0.00 3.51
48 49 2.819595 CAACGGCGGTGAGGATGG 60.820 66.667 22.63 0.00 0.00 3.51
49 50 4.778143 AACGGCGGTGAGGATGGC 62.778 66.667 13.24 0.00 0.00 4.40
67 68 2.276306 GGCGACGACGACGACTAC 60.276 66.667 22.94 5.31 42.66 2.73
68 69 2.734673 GGCGACGACGACGACTACT 61.735 63.158 22.94 0.00 42.66 2.57
69 70 1.295787 GCGACGACGACGACTACTC 60.296 63.158 22.94 0.00 42.66 2.59
70 71 1.343147 CGACGACGACGACTACTCC 59.657 63.158 15.32 0.00 42.66 3.85
71 72 1.343147 GACGACGACGACTACTCCG 59.657 63.158 15.32 0.00 42.66 4.63
72 73 2.021106 CGACGACGACTACTCCGC 59.979 66.667 0.00 0.00 42.66 5.54
73 74 2.021106 GACGACGACTACTCCGCG 59.979 66.667 0.00 0.00 34.57 6.46
74 75 2.734673 GACGACGACTACTCCGCGT 61.735 63.158 4.92 0.00 40.33 6.01
75 76 2.233007 GACGACGACTACTCCGCGTT 62.233 60.000 4.92 0.00 38.83 4.84
76 77 1.579626 CGACGACTACTCCGCGTTC 60.580 63.158 4.92 0.00 38.51 3.95
77 78 1.499056 GACGACTACTCCGCGTTCA 59.501 57.895 4.92 0.00 38.51 3.18
78 79 0.520827 GACGACTACTCCGCGTTCAG 60.521 60.000 4.92 0.00 38.51 3.02
79 80 1.868251 CGACTACTCCGCGTTCAGC 60.868 63.158 4.92 0.00 43.95 4.26
80 81 1.516603 GACTACTCCGCGTTCAGCC 60.517 63.158 4.92 0.00 44.76 4.85
81 82 2.209064 GACTACTCCGCGTTCAGCCA 62.209 60.000 4.92 0.00 44.76 4.75
82 83 1.517257 CTACTCCGCGTTCAGCCAG 60.517 63.158 4.92 0.00 44.76 4.85
83 84 2.214181 CTACTCCGCGTTCAGCCAGT 62.214 60.000 4.92 0.00 44.76 4.00
84 85 1.812686 TACTCCGCGTTCAGCCAGTT 61.813 55.000 4.92 0.00 44.76 3.16
85 86 2.357034 TCCGCGTTCAGCCAGTTC 60.357 61.111 4.92 0.00 44.76 3.01
86 87 3.423154 CCGCGTTCAGCCAGTTCC 61.423 66.667 4.92 0.00 44.76 3.62
87 88 2.357517 CGCGTTCAGCCAGTTCCT 60.358 61.111 0.00 0.00 44.76 3.36
88 89 1.961277 CGCGTTCAGCCAGTTCCTT 60.961 57.895 0.00 0.00 44.76 3.36
89 90 1.507141 CGCGTTCAGCCAGTTCCTTT 61.507 55.000 0.00 0.00 44.76 3.11
90 91 0.668535 GCGTTCAGCCAGTTCCTTTT 59.331 50.000 0.00 0.00 40.81 2.27
91 92 1.067060 GCGTTCAGCCAGTTCCTTTTT 59.933 47.619 0.00 0.00 40.81 1.94
129 130 5.778161 TTGCTATGTAATATGAATCCGCG 57.222 39.130 0.00 0.00 0.00 6.46
130 131 5.066968 TGCTATGTAATATGAATCCGCGA 57.933 39.130 8.23 0.00 0.00 5.87
131 132 5.474825 TGCTATGTAATATGAATCCGCGAA 58.525 37.500 8.23 0.00 0.00 4.70
132 133 5.347635 TGCTATGTAATATGAATCCGCGAAC 59.652 40.000 8.23 0.00 0.00 3.95
133 134 5.347635 GCTATGTAATATGAATCCGCGAACA 59.652 40.000 8.23 1.92 0.00 3.18
134 135 6.036083 GCTATGTAATATGAATCCGCGAACAT 59.964 38.462 8.23 9.91 0.00 2.71
135 136 5.590104 TGTAATATGAATCCGCGAACATG 57.410 39.130 8.23 0.00 0.00 3.21
136 137 5.053811 TGTAATATGAATCCGCGAACATGT 58.946 37.500 8.23 0.00 0.00 3.21
137 138 5.525745 TGTAATATGAATCCGCGAACATGTT 59.474 36.000 11.78 11.78 0.00 2.71
138 139 5.499139 AATATGAATCCGCGAACATGTTT 57.501 34.783 13.36 0.00 0.00 2.83
139 140 6.612247 AATATGAATCCGCGAACATGTTTA 57.388 33.333 13.36 0.00 0.00 2.01
140 141 4.955925 ATGAATCCGCGAACATGTTTAA 57.044 36.364 13.36 0.00 0.00 1.52
141 142 4.335082 TGAATCCGCGAACATGTTTAAG 57.665 40.909 13.36 8.72 0.00 1.85
142 143 3.749088 TGAATCCGCGAACATGTTTAAGT 59.251 39.130 13.36 0.00 0.00 2.24
143 144 4.214545 TGAATCCGCGAACATGTTTAAGTT 59.785 37.500 13.36 3.84 0.00 2.66
144 145 4.759516 ATCCGCGAACATGTTTAAGTTT 57.240 36.364 13.36 0.00 0.00 2.66
145 146 3.879427 TCCGCGAACATGTTTAAGTTTG 58.121 40.909 13.36 0.00 33.28 2.93
146 147 2.403698 CCGCGAACATGTTTAAGTTTGC 59.596 45.455 13.36 3.81 46.64 3.68
150 151 6.304788 GCGAACATGTTTAAGTTTGCTATG 57.695 37.500 13.36 0.00 46.61 2.23
151 152 6.083630 GCGAACATGTTTAAGTTTGCTATGA 58.916 36.000 13.36 0.00 46.61 2.15
152 153 6.580791 GCGAACATGTTTAAGTTTGCTATGAA 59.419 34.615 13.36 0.00 46.61 2.57
153 154 7.273381 GCGAACATGTTTAAGTTTGCTATGAAT 59.727 33.333 13.36 0.00 46.61 2.57
154 155 9.767684 CGAACATGTTTAAGTTTGCTATGAATA 57.232 29.630 13.36 0.00 0.00 1.75
165 166 8.469309 AGTTTGCTATGAATATATGCCAAAGT 57.531 30.769 0.00 0.00 0.00 2.66
166 167 8.917088 AGTTTGCTATGAATATATGCCAAAGTT 58.083 29.630 0.00 0.00 0.00 2.66
167 168 9.533253 GTTTGCTATGAATATATGCCAAAGTTT 57.467 29.630 0.00 0.00 0.00 2.66
168 169 9.531942 TTTGCTATGAATATATGCCAAAGTTTG 57.468 29.630 8.73 8.73 0.00 2.93
169 170 7.147312 TGCTATGAATATATGCCAAAGTTTGC 58.853 34.615 10.25 6.59 0.00 3.68
170 171 6.587608 GCTATGAATATATGCCAAAGTTTGCC 59.412 38.462 10.25 0.00 0.00 4.52
171 172 4.930963 TGAATATATGCCAAAGTTTGCCG 58.069 39.130 10.25 0.00 0.00 5.69
172 173 4.642437 TGAATATATGCCAAAGTTTGCCGA 59.358 37.500 10.25 0.00 0.00 5.54
173 174 5.126222 TGAATATATGCCAAAGTTTGCCGAA 59.874 36.000 10.25 0.00 0.00 4.30
174 175 3.951775 ATATGCCAAAGTTTGCCGAAA 57.048 38.095 10.25 0.00 0.00 3.46
175 176 2.837532 ATGCCAAAGTTTGCCGAAAT 57.162 40.000 10.25 0.00 0.00 2.17
176 177 2.611225 TGCCAAAGTTTGCCGAAATT 57.389 40.000 10.25 0.00 0.00 1.82
177 178 2.911484 TGCCAAAGTTTGCCGAAATTT 58.089 38.095 10.25 0.00 36.07 1.82
178 179 4.060038 TGCCAAAGTTTGCCGAAATTTA 57.940 36.364 10.25 0.00 34.10 1.40
179 180 4.054671 TGCCAAAGTTTGCCGAAATTTAG 58.945 39.130 10.25 0.00 34.10 1.85
180 181 4.202161 TGCCAAAGTTTGCCGAAATTTAGA 60.202 37.500 10.25 0.00 34.10 2.10
181 182 4.149922 GCCAAAGTTTGCCGAAATTTAGAC 59.850 41.667 10.25 0.00 34.10 2.59
182 183 4.381566 CCAAAGTTTGCCGAAATTTAGACG 59.618 41.667 10.25 0.00 34.10 4.18
183 184 4.823790 AAGTTTGCCGAAATTTAGACGT 57.176 36.364 0.00 0.00 0.00 4.34
184 185 4.141855 AGTTTGCCGAAATTTAGACGTG 57.858 40.909 0.00 0.00 0.00 4.49
185 186 3.562557 AGTTTGCCGAAATTTAGACGTGT 59.437 39.130 0.00 0.00 0.00 4.49
186 187 4.035909 AGTTTGCCGAAATTTAGACGTGTT 59.964 37.500 0.00 0.00 0.00 3.32
187 188 4.555348 TTGCCGAAATTTAGACGTGTTT 57.445 36.364 0.00 0.00 0.00 2.83
188 189 5.670149 TTGCCGAAATTTAGACGTGTTTA 57.330 34.783 0.00 0.00 0.00 2.01
189 190 5.272167 TGCCGAAATTTAGACGTGTTTAG 57.728 39.130 0.00 0.00 0.00 1.85
190 191 4.086574 GCCGAAATTTAGACGTGTTTAGC 58.913 43.478 0.00 0.00 0.00 3.09
191 192 4.644954 CCGAAATTTAGACGTGTTTAGCC 58.355 43.478 0.00 0.00 0.00 3.93
192 193 4.320491 CGAAATTTAGACGTGTTTAGCCG 58.680 43.478 0.00 0.00 0.00 5.52
193 194 4.090354 CGAAATTTAGACGTGTTTAGCCGA 59.910 41.667 0.00 0.00 0.00 5.54
194 195 5.388682 CGAAATTTAGACGTGTTTAGCCGAA 60.389 40.000 0.00 0.00 0.00 4.30
195 196 4.916099 ATTTAGACGTGTTTAGCCGAAC 57.084 40.909 0.00 0.00 0.00 3.95
196 197 3.648339 TTAGACGTGTTTAGCCGAACT 57.352 42.857 0.00 0.00 0.00 3.01
197 198 2.521105 AGACGTGTTTAGCCGAACTT 57.479 45.000 0.00 0.00 0.00 2.66
198 199 2.401351 AGACGTGTTTAGCCGAACTTC 58.599 47.619 0.00 0.00 0.00 3.01
199 200 1.123756 GACGTGTTTAGCCGAACTTCG 59.876 52.381 4.07 4.07 40.07 3.79
200 201 0.179258 CGTGTTTAGCCGAACTTCGC 60.179 55.000 5.61 2.03 38.82 4.70
201 202 0.165295 GTGTTTAGCCGAACTTCGCC 59.835 55.000 5.61 0.00 38.82 5.54
202 203 1.286354 TGTTTAGCCGAACTTCGCCG 61.286 55.000 5.61 0.00 38.82 6.46
203 204 1.010419 GTTTAGCCGAACTTCGCCGA 61.010 55.000 5.61 0.00 38.82 5.54
204 205 0.319727 TTTAGCCGAACTTCGCCGAA 60.320 50.000 5.61 0.00 38.82 4.30
205 206 1.010419 TTAGCCGAACTTCGCCGAAC 61.010 55.000 5.61 0.00 38.82 3.95
206 207 4.130281 GCCGAACTTCGCCGAACG 62.130 66.667 5.61 0.00 45.62 3.95
207 208 2.732094 CCGAACTTCGCCGAACGT 60.732 61.111 5.61 0.00 44.19 3.99
208 209 2.305127 CCGAACTTCGCCGAACGTT 61.305 57.895 0.00 0.00 44.19 3.99
209 210 1.561250 CGAACTTCGCCGAACGTTT 59.439 52.632 0.46 0.98 44.19 3.60
210 211 0.042794 CGAACTTCGCCGAACGTTTT 60.043 50.000 0.46 0.00 44.19 2.43
211 212 1.655587 GAACTTCGCCGAACGTTTTC 58.344 50.000 0.46 0.00 44.19 2.29
212 213 1.259770 GAACTTCGCCGAACGTTTTCT 59.740 47.619 0.46 0.00 44.19 2.52
213 214 1.292992 ACTTCGCCGAACGTTTTCTT 58.707 45.000 0.46 0.00 44.19 2.52
214 215 1.667212 ACTTCGCCGAACGTTTTCTTT 59.333 42.857 0.46 0.00 44.19 2.52
215 216 2.096335 ACTTCGCCGAACGTTTTCTTTT 59.904 40.909 0.46 0.00 44.19 2.27
216 217 2.828874 TCGCCGAACGTTTTCTTTTT 57.171 40.000 0.46 0.00 44.19 1.94
231 232 2.727103 TTTTTGAACGAGCCTGGGG 58.273 52.632 0.00 0.00 0.00 4.96
232 233 0.825840 TTTTTGAACGAGCCTGGGGG 60.826 55.000 0.00 0.00 0.00 5.40
254 255 4.135153 CCTGGGGCGACGACTGAG 62.135 72.222 0.00 0.00 0.00 3.35
255 256 4.135153 CTGGGGCGACGACTGAGG 62.135 72.222 0.00 0.00 0.00 3.86
256 257 4.671590 TGGGGCGACGACTGAGGA 62.672 66.667 0.00 0.00 0.00 3.71
257 258 4.131088 GGGGCGACGACTGAGGAC 62.131 72.222 0.00 0.00 0.00 3.85
258 259 3.063084 GGGCGACGACTGAGGACT 61.063 66.667 0.00 0.00 0.00 3.85
259 260 1.748122 GGGCGACGACTGAGGACTA 60.748 63.158 0.00 0.00 0.00 2.59
260 261 1.716826 GGGCGACGACTGAGGACTAG 61.717 65.000 0.00 0.00 0.00 2.57
261 262 1.062845 GCGACGACTGAGGACTAGC 59.937 63.158 0.00 0.00 0.00 3.42
262 263 1.370587 GCGACGACTGAGGACTAGCT 61.371 60.000 0.00 0.00 0.00 3.32
263 264 0.653636 CGACGACTGAGGACTAGCTC 59.346 60.000 0.00 0.00 0.00 4.09
264 265 1.740297 GACGACTGAGGACTAGCTCA 58.260 55.000 0.00 0.85 0.00 4.26
265 266 1.399089 GACGACTGAGGACTAGCTCAC 59.601 57.143 0.00 0.00 0.00 3.51
266 267 0.736053 CGACTGAGGACTAGCTCACC 59.264 60.000 0.00 0.00 0.00 4.02
267 268 1.107945 GACTGAGGACTAGCTCACCC 58.892 60.000 0.00 0.00 0.00 4.61
268 269 0.324830 ACTGAGGACTAGCTCACCCC 60.325 60.000 0.00 0.00 0.00 4.95
269 270 1.001760 TGAGGACTAGCTCACCCCC 59.998 63.158 0.00 0.00 0.00 5.40
270 271 1.001760 GAGGACTAGCTCACCCCCA 59.998 63.158 0.00 0.00 0.00 4.96
271 272 1.002274 AGGACTAGCTCACCCCCAG 59.998 63.158 0.00 0.00 0.00 4.45
272 273 2.066999 GGACTAGCTCACCCCCAGG 61.067 68.421 0.00 0.00 40.04 4.45
273 274 2.689034 ACTAGCTCACCCCCAGGC 60.689 66.667 0.00 0.00 36.11 4.85
274 275 3.483869 CTAGCTCACCCCCAGGCC 61.484 72.222 0.00 0.00 36.11 5.19
278 279 3.411517 CTCACCCCCAGGCCGATT 61.412 66.667 0.00 0.00 36.11 3.34
279 280 2.938798 TCACCCCCAGGCCGATTT 60.939 61.111 0.00 0.00 36.11 2.17
280 281 2.037208 CACCCCCAGGCCGATTTT 59.963 61.111 0.00 0.00 36.11 1.82
281 282 1.609210 CACCCCCAGGCCGATTTTT 60.609 57.895 0.00 0.00 36.11 1.94
295 296 3.972276 TTTTTGCGCCGGCTCACC 61.972 61.111 26.68 10.54 40.82 4.02
296 297 4.947147 TTTTGCGCCGGCTCACCT 62.947 61.111 26.68 0.00 40.82 4.00
305 306 4.459089 GGCTCACCTCCAGGCGAC 62.459 72.222 0.00 0.00 39.32 5.19
306 307 4.803426 GCTCACCTCCAGGCGACG 62.803 72.222 0.00 0.00 39.32 5.12
307 308 3.062466 CTCACCTCCAGGCGACGA 61.062 66.667 0.00 0.00 39.32 4.20
308 309 2.362503 TCACCTCCAGGCGACGAT 60.363 61.111 0.00 0.00 39.32 3.73
309 310 1.949847 CTCACCTCCAGGCGACGATT 61.950 60.000 0.00 0.00 39.32 3.34
310 311 1.079127 CACCTCCAGGCGACGATTT 60.079 57.895 0.00 0.00 39.32 2.17
311 312 0.673644 CACCTCCAGGCGACGATTTT 60.674 55.000 0.00 0.00 39.32 1.82
312 313 0.899720 ACCTCCAGGCGACGATTTTA 59.100 50.000 0.00 0.00 39.32 1.52
313 314 1.134788 ACCTCCAGGCGACGATTTTAG 60.135 52.381 0.00 0.00 39.32 1.85
314 315 1.571919 CTCCAGGCGACGATTTTAGG 58.428 55.000 0.00 0.00 0.00 2.69
315 316 0.461339 TCCAGGCGACGATTTTAGGC 60.461 55.000 0.00 0.00 0.00 3.93
316 317 1.636340 CAGGCGACGATTTTAGGCG 59.364 57.895 0.00 0.00 44.15 5.52
317 318 1.082117 CAGGCGACGATTTTAGGCGT 61.082 55.000 0.00 0.00 43.06 5.68
323 324 2.295253 ACGATTTTAGGCGTCCTCTG 57.705 50.000 1.46 0.00 35.59 3.35
324 325 1.134788 ACGATTTTAGGCGTCCTCTGG 60.135 52.381 1.46 0.00 35.59 3.86
325 326 1.136305 CGATTTTAGGCGTCCTCTGGA 59.864 52.381 1.46 0.00 34.61 3.86
326 327 2.799917 CGATTTTAGGCGTCCTCTGGAG 60.800 54.545 1.46 0.00 34.61 3.86
339 340 2.630580 CCTCTGGAGGGTCAACTATAGC 59.369 54.545 8.68 0.00 44.87 2.97
340 341 3.571590 CTCTGGAGGGTCAACTATAGCT 58.428 50.000 0.00 0.00 0.00 3.32
341 342 3.300388 TCTGGAGGGTCAACTATAGCTG 58.700 50.000 0.00 0.00 0.00 4.24
342 343 2.366916 CTGGAGGGTCAACTATAGCTGG 59.633 54.545 0.00 0.00 0.00 4.85
343 344 1.070914 GGAGGGTCAACTATAGCTGGC 59.929 57.143 0.00 0.00 0.00 4.85
344 345 1.070914 GAGGGTCAACTATAGCTGGCC 59.929 57.143 16.97 16.97 35.27 5.36
345 346 0.837272 GGGTCAACTATAGCTGGCCA 59.163 55.000 24.45 4.71 37.62 5.36
346 347 1.211949 GGGTCAACTATAGCTGGCCAA 59.788 52.381 24.45 0.00 37.62 4.52
347 348 2.356741 GGGTCAACTATAGCTGGCCAAA 60.357 50.000 24.45 0.00 37.62 3.28
348 349 3.555966 GGTCAACTATAGCTGGCCAAAT 58.444 45.455 19.69 3.30 36.02 2.32
349 350 3.316308 GGTCAACTATAGCTGGCCAAATG 59.684 47.826 19.69 0.00 36.02 2.32
350 351 3.316308 GTCAACTATAGCTGGCCAAATGG 59.684 47.826 7.01 5.55 38.53 3.16
351 352 2.624838 CAACTATAGCTGGCCAAATGGG 59.375 50.000 7.01 0.00 40.85 4.00
360 361 3.477582 CCAAATGGGCCGGGTTTT 58.522 55.556 2.18 0.00 0.00 2.43
361 362 1.757949 CCAAATGGGCCGGGTTTTT 59.242 52.632 2.18 0.00 0.00 1.94
362 363 0.321210 CCAAATGGGCCGGGTTTTTC 60.321 55.000 2.18 0.00 0.00 2.29
363 364 0.669012 CAAATGGGCCGGGTTTTTCG 60.669 55.000 2.18 0.00 0.00 3.46
365 366 4.978705 TGGGCCGGGTTTTTCGGG 62.979 66.667 2.18 0.00 46.86 5.14
413 414 4.641645 CTTGGGCCAGGCACGACA 62.642 66.667 15.19 3.34 32.76 4.35
414 415 4.947147 TTGGGCCAGGCACGACAC 62.947 66.667 15.19 0.00 32.76 3.67
419 420 3.991051 CCAGGCACGACACGGTCT 61.991 66.667 0.00 0.00 0.00 3.85
420 421 2.632544 CCAGGCACGACACGGTCTA 61.633 63.158 0.00 0.00 0.00 2.59
421 422 1.287815 CAGGCACGACACGGTCTAA 59.712 57.895 0.00 0.00 0.00 2.10
422 423 0.319211 CAGGCACGACACGGTCTAAA 60.319 55.000 0.00 0.00 0.00 1.85
423 424 0.319297 AGGCACGACACGGTCTAAAC 60.319 55.000 0.00 0.00 0.00 2.01
424 425 1.611592 GGCACGACACGGTCTAAACG 61.612 60.000 0.00 0.00 37.36 3.60
425 426 1.611592 GCACGACACGGTCTAAACGG 61.612 60.000 0.00 0.00 35.23 4.44
426 427 1.005294 CACGACACGGTCTAAACGGG 61.005 60.000 0.00 0.00 41.32 5.28
427 428 2.090524 CGACACGGTCTAAACGGGC 61.091 63.158 0.00 0.00 38.56 6.13
428 429 1.739196 GACACGGTCTAAACGGGCC 60.739 63.158 0.00 0.00 38.56 5.80
431 432 4.825252 CGGTCTAAACGGGCCGGG 62.825 72.222 31.78 16.63 40.45 5.73
517 518 6.490566 GGCACGACCCGATTATATATTTTT 57.509 37.500 0.00 0.00 0.00 1.94
553 554 6.392911 ACATCTATATATGGCCCAACATGT 57.607 37.500 0.00 0.00 32.39 3.21
554 555 7.509236 ACATCTATATATGGCCCAACATGTA 57.491 36.000 0.00 0.00 32.39 2.29
555 556 7.927788 ACATCTATATATGGCCCAACATGTAA 58.072 34.615 0.00 0.00 30.02 2.41
556 557 8.390143 ACATCTATATATGGCCCAACATGTAAA 58.610 33.333 0.00 0.00 30.02 2.01
557 558 9.241919 CATCTATATATGGCCCAACATGTAAAA 57.758 33.333 0.00 0.00 30.02 1.52
558 559 9.821240 ATCTATATATGGCCCAACATGTAAAAA 57.179 29.630 0.00 0.00 30.02 1.94
559 560 9.821240 TCTATATATGGCCCAACATGTAAAAAT 57.179 29.630 0.00 0.00 30.02 1.82
562 563 5.612725 ATGGCCCAACATGTAAAAATAGG 57.387 39.130 0.00 0.00 0.00 2.57
563 564 3.196685 TGGCCCAACATGTAAAAATAGGC 59.803 43.478 0.00 4.05 37.14 3.93
564 565 3.450817 GGCCCAACATGTAAAAATAGGCT 59.549 43.478 0.00 0.00 37.98 4.58
565 566 4.647399 GGCCCAACATGTAAAAATAGGCTA 59.353 41.667 0.00 0.00 37.98 3.93
566 567 5.128008 GGCCCAACATGTAAAAATAGGCTAA 59.872 40.000 0.00 0.00 37.98 3.09
567 568 6.351456 GGCCCAACATGTAAAAATAGGCTAAA 60.351 38.462 0.00 0.00 37.98 1.85
568 569 7.100409 GCCCAACATGTAAAAATAGGCTAAAA 58.900 34.615 0.00 0.00 35.00 1.52
569 570 7.604545 GCCCAACATGTAAAAATAGGCTAAAAA 59.395 33.333 0.00 0.00 35.00 1.94
592 593 3.536158 GCTCAGTGCGTCAAATAACAA 57.464 42.857 0.00 0.00 0.00 2.83
593 594 3.482786 GCTCAGTGCGTCAAATAACAAG 58.517 45.455 0.00 0.00 0.00 3.16
594 595 3.482786 CTCAGTGCGTCAAATAACAAGC 58.517 45.455 0.00 0.00 0.00 4.01
595 596 3.138304 TCAGTGCGTCAAATAACAAGCT 58.862 40.909 0.00 0.00 0.00 3.74
596 597 4.311606 TCAGTGCGTCAAATAACAAGCTA 58.688 39.130 0.00 0.00 0.00 3.32
597 598 4.752604 TCAGTGCGTCAAATAACAAGCTAA 59.247 37.500 0.00 0.00 0.00 3.09
598 599 5.237561 TCAGTGCGTCAAATAACAAGCTAAA 59.762 36.000 0.00 0.00 0.00 1.85
599 600 5.912396 CAGTGCGTCAAATAACAAGCTAAAA 59.088 36.000 0.00 0.00 0.00 1.52
600 601 6.416455 CAGTGCGTCAAATAACAAGCTAAAAA 59.584 34.615 0.00 0.00 0.00 1.94
601 602 7.114811 CAGTGCGTCAAATAACAAGCTAAAAAT 59.885 33.333 0.00 0.00 0.00 1.82
602 603 8.293867 AGTGCGTCAAATAACAAGCTAAAAATA 58.706 29.630 0.00 0.00 0.00 1.40
603 604 8.363029 GTGCGTCAAATAACAAGCTAAAAATAC 58.637 33.333 0.00 0.00 0.00 1.89
604 605 7.269511 TGCGTCAAATAACAAGCTAAAAATACG 59.730 33.333 0.00 0.00 0.00 3.06
605 606 7.588834 CGTCAAATAACAAGCTAAAAATACGC 58.411 34.615 0.00 0.00 0.00 4.42
606 607 7.509381 CGTCAAATAACAAGCTAAAAATACGCG 60.509 37.037 3.53 3.53 0.00 6.01
607 608 6.743627 TCAAATAACAAGCTAAAAATACGCGG 59.256 34.615 12.47 0.00 0.00 6.46
608 609 2.537639 ACAAGCTAAAAATACGCGGC 57.462 45.000 12.47 0.36 0.00 6.53
609 610 1.131693 ACAAGCTAAAAATACGCGGCC 59.868 47.619 12.47 0.00 0.00 6.13
610 611 0.736636 AAGCTAAAAATACGCGGCCC 59.263 50.000 12.47 0.00 0.00 5.80
611 612 0.393267 AGCTAAAAATACGCGGCCCA 60.393 50.000 12.47 0.00 0.00 5.36
612 613 0.248336 GCTAAAAATACGCGGCCCAC 60.248 55.000 12.47 0.00 0.00 4.61
613 614 0.379316 CTAAAAATACGCGGCCCACC 59.621 55.000 12.47 0.00 0.00 4.61
631 632 2.559330 GTGCTAAACGGGCCAACG 59.441 61.111 4.39 1.48 40.31 4.10
645 646 4.622650 AACGTGCCGGCCCGTTTA 62.623 61.111 38.23 11.19 44.16 2.01
648 649 2.265424 GTGCCGGCCCGTTTACTA 59.735 61.111 26.77 0.00 0.00 1.82
649 650 1.375780 GTGCCGGCCCGTTTACTAA 60.376 57.895 26.77 0.00 0.00 2.24
650 651 1.375780 TGCCGGCCCGTTTACTAAC 60.376 57.895 26.77 0.00 0.00 2.34
651 652 1.078918 GCCGGCCCGTTTACTAACT 60.079 57.895 18.11 0.00 31.89 2.24
652 653 1.363885 GCCGGCCCGTTTACTAACTG 61.364 60.000 18.11 0.00 31.89 3.16
653 654 0.741927 CCGGCCCGTTTACTAACTGG 60.742 60.000 0.85 0.00 40.48 4.00
654 655 0.741927 CGGCCCGTTTACTAACTGGG 60.742 60.000 0.00 11.19 44.21 4.45
656 657 3.164026 CCCGTTTACTAACTGGGCC 57.836 57.895 0.00 0.00 39.48 5.80
657 658 0.741927 CCCGTTTACTAACTGGGCCG 60.742 60.000 0.00 0.00 39.48 6.13
658 659 0.037046 CCGTTTACTAACTGGGCCGT 60.037 55.000 0.00 0.00 31.89 5.68
659 660 1.073177 CGTTTACTAACTGGGCCGTG 58.927 55.000 0.00 0.00 31.89 4.94
660 661 0.800631 GTTTACTAACTGGGCCGTGC 59.199 55.000 0.00 0.00 0.00 5.34
706 707 4.367023 GGCACAGCACGACCCGTA 62.367 66.667 0.00 0.00 38.32 4.02
707 708 2.125673 GCACAGCACGACCCGTAT 60.126 61.111 0.00 0.00 38.32 3.06
708 709 1.140161 GCACAGCACGACCCGTATA 59.860 57.895 0.00 0.00 38.32 1.47
709 710 0.870307 GCACAGCACGACCCGTATAG 60.870 60.000 0.00 0.00 38.32 1.31
710 711 0.454600 CACAGCACGACCCGTATAGT 59.545 55.000 0.00 0.00 38.32 2.12
711 712 1.672363 CACAGCACGACCCGTATAGTA 59.328 52.381 0.00 0.00 38.32 1.82
712 713 2.097954 CACAGCACGACCCGTATAGTAA 59.902 50.000 0.00 0.00 38.32 2.24
713 714 2.954318 ACAGCACGACCCGTATAGTAAT 59.046 45.455 0.00 0.00 38.32 1.89
714 715 3.004106 ACAGCACGACCCGTATAGTAATC 59.996 47.826 0.00 0.00 38.32 1.75
715 716 2.225019 AGCACGACCCGTATAGTAATCG 59.775 50.000 0.00 0.00 38.32 3.34
716 717 2.031682 GCACGACCCGTATAGTAATCGT 60.032 50.000 0.00 0.00 43.08 3.73
717 718 3.885484 ACGACCCGTATAGTAATCGTG 57.115 47.619 0.00 0.00 40.95 4.35
718 719 2.031682 ACGACCCGTATAGTAATCGTGC 60.032 50.000 0.00 0.00 40.95 5.34
719 720 2.666619 CGACCCGTATAGTAATCGTGCC 60.667 54.545 0.00 0.00 0.00 5.01
720 721 1.615392 ACCCGTATAGTAATCGTGCCC 59.385 52.381 0.00 0.00 0.00 5.36
721 722 1.891150 CCCGTATAGTAATCGTGCCCT 59.109 52.381 0.00 0.00 0.00 5.19
722 723 2.352421 CCCGTATAGTAATCGTGCCCTG 60.352 54.545 0.00 0.00 0.00 4.45
723 724 2.352421 CCGTATAGTAATCGTGCCCTGG 60.352 54.545 0.00 0.00 0.00 4.45
724 725 2.685100 GTATAGTAATCGTGCCCTGGC 58.315 52.381 0.00 0.00 42.35 4.85
725 726 0.033504 ATAGTAATCGTGCCCTGGCG 59.966 55.000 3.32 0.00 45.51 5.69
726 727 2.023414 TAGTAATCGTGCCCTGGCGG 62.023 60.000 3.32 0.00 45.51 6.13
752 753 2.895372 GGGCCAGGCACGATTACG 60.895 66.667 15.19 0.00 45.75 3.18
753 754 2.185867 GGCCAGGCACGATTACGA 59.814 61.111 15.19 0.00 42.66 3.43
754 755 1.448893 GGCCAGGCACGATTACGAA 60.449 57.895 15.19 0.00 42.66 3.85
755 756 0.814010 GGCCAGGCACGATTACGAAT 60.814 55.000 15.19 0.00 42.66 3.34
756 757 0.304705 GCCAGGCACGATTACGAATG 59.695 55.000 6.55 0.00 42.66 2.67
757 758 0.937304 CCAGGCACGATTACGAATGG 59.063 55.000 0.00 0.00 42.66 3.16
758 759 0.937304 CAGGCACGATTACGAATGGG 59.063 55.000 0.00 0.00 42.66 4.00
759 760 0.814010 AGGCACGATTACGAATGGGC 60.814 55.000 0.00 0.00 42.66 5.36
760 761 1.647084 GCACGATTACGAATGGGCC 59.353 57.895 0.00 0.00 42.66 5.80
761 762 1.931551 CACGATTACGAATGGGCCG 59.068 57.895 0.00 0.00 42.66 6.13
762 763 1.227438 ACGATTACGAATGGGCCGG 60.227 57.895 0.00 0.00 42.66 6.13
763 764 1.959226 CGATTACGAATGGGCCGGG 60.959 63.158 2.18 0.00 42.66 5.73
764 765 2.203294 ATTACGAATGGGCCGGGC 60.203 61.111 22.00 22.00 0.00 6.13
800 801 3.918544 CCGGTTTGGCCAGGTATG 58.081 61.111 5.11 0.00 36.97 2.39
809 810 2.124320 CCAGGTATGGGGCCAACG 60.124 66.667 4.39 0.00 43.54 4.10
810 811 2.124320 CAGGTATGGGGCCAACGG 60.124 66.667 4.39 0.00 0.00 4.44
811 812 3.416880 AGGTATGGGGCCAACGGG 61.417 66.667 4.39 0.00 37.18 5.28
812 813 3.735097 GGTATGGGGCCAACGGGT 61.735 66.667 4.39 0.00 36.17 5.28
813 814 2.439519 GTATGGGGCCAACGGGTG 60.440 66.667 4.39 0.00 36.17 4.61
824 825 2.332063 CAACGGGTGGAGATGCTATT 57.668 50.000 0.00 0.00 0.00 1.73
825 826 3.469008 CAACGGGTGGAGATGCTATTA 57.531 47.619 0.00 0.00 0.00 0.98
826 827 4.008074 CAACGGGTGGAGATGCTATTAT 57.992 45.455 0.00 0.00 0.00 1.28
827 828 5.147330 CAACGGGTGGAGATGCTATTATA 57.853 43.478 0.00 0.00 0.00 0.98
828 829 5.171476 CAACGGGTGGAGATGCTATTATAG 58.829 45.833 0.00 0.00 0.00 1.31
845 846 8.367943 CTATTATAGCAATCTCATGAGCCATC 57.632 38.462 18.36 7.23 0.00 3.51
846 847 4.635699 ATAGCAATCTCATGAGCCATCA 57.364 40.909 18.36 0.17 40.50 3.07
847 848 2.573369 AGCAATCTCATGAGCCATCAC 58.427 47.619 18.36 5.17 38.57 3.06
848 849 2.092592 AGCAATCTCATGAGCCATCACA 60.093 45.455 18.36 0.00 38.57 3.58
849 850 2.885266 GCAATCTCATGAGCCATCACAT 59.115 45.455 18.36 1.33 38.57 3.21
850 851 3.318275 GCAATCTCATGAGCCATCACATT 59.682 43.478 18.36 7.70 38.57 2.71
851 852 4.202121 GCAATCTCATGAGCCATCACATTT 60.202 41.667 18.36 0.00 38.57 2.32
852 853 5.281727 CAATCTCATGAGCCATCACATTTG 58.718 41.667 18.36 6.38 38.57 2.32
853 854 3.284617 TCTCATGAGCCATCACATTTGG 58.715 45.455 18.36 0.00 38.57 3.28
860 861 1.712401 CCATCACATTTGGCCAAACG 58.288 50.000 32.62 27.32 32.51 3.60
861 862 1.271934 CCATCACATTTGGCCAAACGA 59.728 47.619 32.62 26.56 32.51 3.85
862 863 2.327568 CATCACATTTGGCCAAACGAC 58.672 47.619 32.62 0.00 32.51 4.34
863 864 0.671251 TCACATTTGGCCAAACGACC 59.329 50.000 32.62 0.00 32.51 4.79
864 865 0.673437 CACATTTGGCCAAACGACCT 59.327 50.000 32.62 14.33 32.51 3.85
865 866 0.673437 ACATTTGGCCAAACGACCTG 59.327 50.000 32.62 26.36 32.51 4.00
866 867 0.673437 CATTTGGCCAAACGACCTGT 59.327 50.000 32.62 12.76 32.51 4.00
867 868 0.958822 ATTTGGCCAAACGACCTGTC 59.041 50.000 32.62 0.00 32.51 3.51
868 869 0.106918 TTTGGCCAAACGACCTGTCT 60.107 50.000 27.13 0.00 0.00 3.41
869 870 0.106918 TTGGCCAAACGACCTGTCTT 60.107 50.000 17.98 0.00 0.00 3.01
870 871 0.759959 TGGCCAAACGACCTGTCTTA 59.240 50.000 0.61 0.00 0.00 2.10
871 872 1.270625 TGGCCAAACGACCTGTCTTAG 60.271 52.381 0.61 0.00 0.00 2.18
872 873 1.001633 GGCCAAACGACCTGTCTTAGA 59.998 52.381 0.00 0.00 0.00 2.10
873 874 2.549349 GGCCAAACGACCTGTCTTAGAA 60.549 50.000 0.00 0.00 0.00 2.10
874 875 3.135994 GCCAAACGACCTGTCTTAGAAA 58.864 45.455 0.00 0.00 0.00 2.52
875 876 3.562557 GCCAAACGACCTGTCTTAGAAAA 59.437 43.478 0.00 0.00 0.00 2.29
876 877 4.035909 GCCAAACGACCTGTCTTAGAAAAA 59.964 41.667 0.00 0.00 0.00 1.94
917 918 1.859302 TCCTCTTCTTCCTCCTCAGC 58.141 55.000 0.00 0.00 0.00 4.26
935 936 2.678934 CCTCACTCCCGTCCCGAA 60.679 66.667 0.00 0.00 0.00 4.30
944 945 1.678724 CCGTCCCGAACCCCTTTTA 59.321 57.895 0.00 0.00 0.00 1.52
945 946 0.253894 CCGTCCCGAACCCCTTTTAT 59.746 55.000 0.00 0.00 0.00 1.40
947 948 1.744798 CGTCCCGAACCCCTTTTATCC 60.745 57.143 0.00 0.00 0.00 2.59
963 964 2.972153 ATCCTCTCCCAAACCCTACT 57.028 50.000 0.00 0.00 0.00 2.57
974 975 4.323257 CCCAAACCCTACTACAAATCGAGT 60.323 45.833 0.00 0.00 0.00 4.18
975 976 5.105228 CCCAAACCCTACTACAAATCGAGTA 60.105 44.000 0.00 0.00 0.00 2.59
1008 1023 3.416119 GACACTCCGTCAATGTCGATA 57.584 47.619 0.81 0.00 44.69 2.92
1011 1026 1.681793 ACTCCGTCAATGTCGATAGGG 59.318 52.381 0.81 0.00 0.00 3.53
1018 1033 4.310769 GTCAATGTCGATAGGGATGGAAG 58.689 47.826 0.00 0.00 0.00 3.46
1096 1111 2.191641 GCTCTGTGGATGGGCTCC 59.808 66.667 0.00 0.00 45.19 4.70
1097 1112 2.373707 GCTCTGTGGATGGGCTCCT 61.374 63.158 0.00 0.00 45.21 3.69
1098 1113 1.828768 CTCTGTGGATGGGCTCCTC 59.171 63.158 0.00 0.00 45.21 3.71
1680 1701 1.200519 GGCTCCCTATACACACCACA 58.799 55.000 0.00 0.00 0.00 4.17
1767 1789 6.291648 AGCTCACTGAATATTCTCAAGACA 57.708 37.500 16.24 0.00 0.00 3.41
1768 1790 6.105333 AGCTCACTGAATATTCTCAAGACAC 58.895 40.000 16.24 0.55 0.00 3.67
1771 1793 6.166279 TCACTGAATATTCTCAAGACACCAC 58.834 40.000 16.24 0.00 0.00 4.16
1772 1794 5.352569 CACTGAATATTCTCAAGACACCACC 59.647 44.000 16.24 0.00 0.00 4.61
1773 1795 5.013079 ACTGAATATTCTCAAGACACCACCA 59.987 40.000 16.24 0.00 0.00 4.17
1774 1796 5.245531 TGAATATTCTCAAGACACCACCAC 58.754 41.667 16.24 0.00 0.00 4.16
1775 1797 5.013079 TGAATATTCTCAAGACACCACCACT 59.987 40.000 16.24 0.00 0.00 4.00
1776 1798 6.212589 TGAATATTCTCAAGACACCACCACTA 59.787 38.462 16.24 0.00 0.00 2.74
1777 1799 3.746045 TTCTCAAGACACCACCACTAC 57.254 47.619 0.00 0.00 0.00 2.73
1778 1800 2.958818 TCTCAAGACACCACCACTACT 58.041 47.619 0.00 0.00 0.00 2.57
1780 1802 2.628178 CTCAAGACACCACCACTACTGA 59.372 50.000 0.00 0.00 0.00 3.41
1782 1804 4.412843 TCAAGACACCACCACTACTGATA 58.587 43.478 0.00 0.00 0.00 2.15
1784 1806 4.317530 AGACACCACCACTACTGATAGA 57.682 45.455 0.00 0.00 32.23 1.98
1785 1807 4.274147 AGACACCACCACTACTGATAGAG 58.726 47.826 0.00 0.00 32.23 2.43
1786 1808 3.366396 ACACCACCACTACTGATAGAGG 58.634 50.000 0.00 0.00 43.04 3.69
1974 3274 1.205893 ACCTCTGAATCTTCCAGCGAC 59.794 52.381 0.00 0.00 0.00 5.19
2019 3319 2.701107 GTGGAGAAGAGGGTTTACAGC 58.299 52.381 0.00 0.00 0.00 4.40
2815 4127 2.675348 CCTGCTCTCAAGGAAAATCGTC 59.325 50.000 0.00 0.00 0.00 4.20
2997 4312 8.349245 ACAATGATGAAACTGTCGTTGAATAAA 58.651 29.630 12.66 0.00 41.59 1.40
3004 4319 5.099042 ACTGTCGTTGAATAAATAGGGCT 57.901 39.130 0.00 0.00 0.00 5.19
3062 4377 2.679996 TAGGCGAGCTGGAGTGCA 60.680 61.111 0.00 0.00 34.99 4.57
3118 4433 1.353091 GTCCAGGAGGAGAAGGTTGT 58.647 55.000 0.00 0.00 46.92 3.32
3214 4544 8.740123 TCAGTTATCAAGTGTTTAGGTTTCAA 57.260 30.769 0.00 0.00 33.51 2.69
3215 4545 9.349713 TCAGTTATCAAGTGTTTAGGTTTCAAT 57.650 29.630 0.00 0.00 33.51 2.57
3366 7275 5.971895 ACTTGTTGTGATTTGTCATTTGC 57.028 34.783 0.00 0.00 0.00 3.68
3502 7455 3.488384 CGTCTCTGATCTCTGTTACTGCC 60.488 52.174 0.00 0.00 0.00 4.85
3540 7493 9.428097 GAAATACATCAAGAAGCCAAGAAAAAT 57.572 29.630 0.00 0.00 0.00 1.82
3615 7568 8.622948 AGAAATAAGTTAAGGTTCAAGAGTGG 57.377 34.615 6.94 0.00 0.00 4.00
3718 7671 4.148128 ACATCATTGTTGTTTTTGCCCA 57.852 36.364 0.00 0.00 29.55 5.36
3725 7678 1.872952 GTTGTTTTTGCCCATGGAAGC 59.127 47.619 15.22 9.96 0.00 3.86
3728 7681 1.003464 GTTTTTGCCCATGGAAGCCAT 59.997 47.619 15.22 0.00 46.37 4.40
3793 7746 4.102681 CCCGGATCCAAAAGGATAACTACT 59.897 45.833 13.41 0.00 0.00 2.57
3823 7776 4.415150 TAGGCACTGGCAGGCAGC 62.415 66.667 23.61 18.44 43.71 5.25
3914 7870 9.627123 AGCTTTATAGGCATAATGACAACTTTA 57.373 29.630 0.00 0.00 0.00 1.85
3981 7937 6.350864 CCTCACTGACATGACCTGATATATCC 60.351 46.154 10.25 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.048222 TTCTCCTGCTTGACGCGG 60.048 61.111 12.47 0.00 44.89 6.46
3 4 2.394563 GCCTTCTCCTGCTTGACGC 61.395 63.158 0.00 0.00 39.77 5.19
5 6 1.743252 CGGCCTTCTCCTGCTTGAC 60.743 63.158 0.00 0.00 0.00 3.18
6 7 1.913262 TCGGCCTTCTCCTGCTTGA 60.913 57.895 0.00 0.00 0.00 3.02
7 8 1.743252 GTCGGCCTTCTCCTGCTTG 60.743 63.158 0.00 0.00 0.00 4.01
8 9 1.768684 TTGTCGGCCTTCTCCTGCTT 61.769 55.000 0.00 0.00 0.00 3.91
9 10 1.557269 ATTGTCGGCCTTCTCCTGCT 61.557 55.000 0.00 0.00 0.00 4.24
10 11 1.078143 ATTGTCGGCCTTCTCCTGC 60.078 57.895 0.00 0.00 0.00 4.85
11 12 0.250234 TCATTGTCGGCCTTCTCCTG 59.750 55.000 0.00 0.00 0.00 3.86
12 13 0.250513 GTCATTGTCGGCCTTCTCCT 59.749 55.000 0.00 0.00 0.00 3.69
13 14 0.036388 TGTCATTGTCGGCCTTCTCC 60.036 55.000 0.00 0.00 0.00 3.71
14 15 1.464997 GTTGTCATTGTCGGCCTTCTC 59.535 52.381 0.00 0.00 0.00 2.87
15 16 1.523758 GTTGTCATTGTCGGCCTTCT 58.476 50.000 0.00 0.00 0.00 2.85
16 17 0.165944 CGTTGTCATTGTCGGCCTTC 59.834 55.000 0.00 0.00 0.00 3.46
17 18 1.234615 CCGTTGTCATTGTCGGCCTT 61.235 55.000 0.00 0.00 36.68 4.35
18 19 1.671054 CCGTTGTCATTGTCGGCCT 60.671 57.895 0.00 0.00 36.68 5.19
19 20 2.867472 CCGTTGTCATTGTCGGCC 59.133 61.111 0.00 0.00 36.68 6.13
21 22 2.474266 CGCCGTTGTCATTGTCGG 59.526 61.111 0.00 0.00 44.86 4.79
22 23 2.314647 ACCGCCGTTGTCATTGTCG 61.315 57.895 0.00 0.00 0.00 4.35
23 24 1.206578 CACCGCCGTTGTCATTGTC 59.793 57.895 0.00 0.00 0.00 3.18
24 25 1.227704 TCACCGCCGTTGTCATTGT 60.228 52.632 0.00 0.00 0.00 2.71
25 26 1.497278 CTCACCGCCGTTGTCATTG 59.503 57.895 0.00 0.00 0.00 2.82
26 27 1.671054 CCTCACCGCCGTTGTCATT 60.671 57.895 0.00 0.00 0.00 2.57
27 28 1.899437 ATCCTCACCGCCGTTGTCAT 61.899 55.000 0.00 0.00 0.00 3.06
28 29 2.579657 ATCCTCACCGCCGTTGTCA 61.580 57.895 0.00 0.00 0.00 3.58
29 30 2.100631 CATCCTCACCGCCGTTGTC 61.101 63.158 0.00 0.00 0.00 3.18
30 31 2.047274 CATCCTCACCGCCGTTGT 60.047 61.111 0.00 0.00 0.00 3.32
31 32 2.819595 CCATCCTCACCGCCGTTG 60.820 66.667 0.00 0.00 0.00 4.10
32 33 4.778143 GCCATCCTCACCGCCGTT 62.778 66.667 0.00 0.00 0.00 4.44
49 50 3.842126 TAGTCGTCGTCGTCGCCG 61.842 66.667 7.01 0.00 39.77 6.46
50 51 2.276306 GTAGTCGTCGTCGTCGCC 60.276 66.667 7.01 0.00 38.33 5.54
51 52 1.295787 GAGTAGTCGTCGTCGTCGC 60.296 63.158 7.01 3.07 38.33 5.19
52 53 1.343147 GGAGTAGTCGTCGTCGTCG 59.657 63.158 5.50 5.50 38.33 5.12
53 54 1.343147 CGGAGTAGTCGTCGTCGTC 59.657 63.158 1.33 0.00 38.33 4.20
54 55 2.734673 GCGGAGTAGTCGTCGTCGT 61.735 63.158 1.33 0.00 38.33 4.34
55 56 2.021106 GCGGAGTAGTCGTCGTCG 59.979 66.667 0.00 0.00 38.55 5.12
56 57 2.021106 CGCGGAGTAGTCGTCGTC 59.979 66.667 0.00 0.00 0.00 4.20
57 58 2.233007 GAACGCGGAGTAGTCGTCGT 62.233 60.000 12.47 9.14 40.07 4.34
58 59 1.579626 GAACGCGGAGTAGTCGTCG 60.580 63.158 12.47 8.08 35.18 5.12
59 60 0.520827 CTGAACGCGGAGTAGTCGTC 60.521 60.000 12.47 0.00 35.18 4.20
60 61 1.500844 CTGAACGCGGAGTAGTCGT 59.499 57.895 12.47 0.00 38.15 4.34
61 62 1.868251 GCTGAACGCGGAGTAGTCG 60.868 63.158 12.47 0.00 0.00 4.18
62 63 1.516603 GGCTGAACGCGGAGTAGTC 60.517 63.158 12.47 0.32 40.44 2.59
63 64 2.214181 CTGGCTGAACGCGGAGTAGT 62.214 60.000 12.47 0.00 40.44 2.73
64 65 1.517257 CTGGCTGAACGCGGAGTAG 60.517 63.158 12.47 4.20 40.44 2.57
65 66 1.812686 AACTGGCTGAACGCGGAGTA 61.813 55.000 12.47 0.00 40.44 2.59
66 67 3.165160 AACTGGCTGAACGCGGAGT 62.165 57.895 12.47 0.00 40.44 3.85
67 68 2.357517 AACTGGCTGAACGCGGAG 60.358 61.111 12.47 4.16 40.44 4.63
68 69 2.357034 GAACTGGCTGAACGCGGA 60.357 61.111 12.47 0.00 40.44 5.54
69 70 3.423154 GGAACTGGCTGAACGCGG 61.423 66.667 12.47 0.00 40.44 6.46
70 71 1.507141 AAAGGAACTGGCTGAACGCG 61.507 55.000 3.53 3.53 40.86 6.01
71 72 0.668535 AAAAGGAACTGGCTGAACGC 59.331 50.000 0.00 0.00 40.86 4.84
103 104 8.551205 CGCGGATTCATATTACATAGCAAATAT 58.449 33.333 0.00 0.00 0.00 1.28
104 105 7.762159 TCGCGGATTCATATTACATAGCAAATA 59.238 33.333 6.13 0.00 0.00 1.40
105 106 6.593770 TCGCGGATTCATATTACATAGCAAAT 59.406 34.615 6.13 0.00 0.00 2.32
106 107 5.929415 TCGCGGATTCATATTACATAGCAAA 59.071 36.000 6.13 0.00 0.00 3.68
107 108 5.474825 TCGCGGATTCATATTACATAGCAA 58.525 37.500 6.13 0.00 0.00 3.91
108 109 5.066968 TCGCGGATTCATATTACATAGCA 57.933 39.130 6.13 0.00 0.00 3.49
109 110 5.347635 TGTTCGCGGATTCATATTACATAGC 59.652 40.000 6.13 0.00 0.00 2.97
110 111 6.944557 TGTTCGCGGATTCATATTACATAG 57.055 37.500 6.13 0.00 0.00 2.23
111 112 6.871492 ACATGTTCGCGGATTCATATTACATA 59.129 34.615 6.13 0.00 0.00 2.29
112 113 5.700832 ACATGTTCGCGGATTCATATTACAT 59.299 36.000 6.13 0.00 0.00 2.29
113 114 5.053811 ACATGTTCGCGGATTCATATTACA 58.946 37.500 6.13 0.00 0.00 2.41
114 115 5.591643 ACATGTTCGCGGATTCATATTAC 57.408 39.130 6.13 0.00 0.00 1.89
115 116 6.612247 AAACATGTTCGCGGATTCATATTA 57.388 33.333 12.39 0.00 0.00 0.98
116 117 5.499139 AAACATGTTCGCGGATTCATATT 57.501 34.783 12.39 0.00 0.00 1.28
117 118 6.260050 ACTTAAACATGTTCGCGGATTCATAT 59.740 34.615 12.39 0.00 0.00 1.78
118 119 5.583061 ACTTAAACATGTTCGCGGATTCATA 59.417 36.000 12.39 0.00 0.00 2.15
119 120 4.394920 ACTTAAACATGTTCGCGGATTCAT 59.605 37.500 12.39 0.00 0.00 2.57
120 121 3.749088 ACTTAAACATGTTCGCGGATTCA 59.251 39.130 12.39 0.00 0.00 2.57
121 122 4.336532 ACTTAAACATGTTCGCGGATTC 57.663 40.909 12.39 0.00 0.00 2.52
122 123 4.759516 AACTTAAACATGTTCGCGGATT 57.240 36.364 12.39 0.00 0.00 3.01
123 124 4.472286 CAAACTTAAACATGTTCGCGGAT 58.528 39.130 12.39 0.00 0.00 4.18
124 125 3.850374 GCAAACTTAAACATGTTCGCGGA 60.850 43.478 12.39 0.00 0.00 5.54
125 126 2.403698 GCAAACTTAAACATGTTCGCGG 59.596 45.455 12.39 5.52 0.00 6.46
126 127 3.296628 AGCAAACTTAAACATGTTCGCG 58.703 40.909 12.39 0.00 32.10 5.87
127 128 6.083630 TCATAGCAAACTTAAACATGTTCGC 58.916 36.000 12.39 6.38 0.00 4.70
128 129 8.673626 ATTCATAGCAAACTTAAACATGTTCG 57.326 30.769 12.39 6.27 0.00 3.95
139 140 8.917088 ACTTTGGCATATATTCATAGCAAACTT 58.083 29.630 0.00 0.00 0.00 2.66
140 141 8.469309 ACTTTGGCATATATTCATAGCAAACT 57.531 30.769 0.00 0.00 0.00 2.66
141 142 9.533253 AAACTTTGGCATATATTCATAGCAAAC 57.467 29.630 0.00 0.00 0.00 2.93
142 143 9.531942 CAAACTTTGGCATATATTCATAGCAAA 57.468 29.630 0.00 0.00 0.00 3.68
143 144 7.652909 GCAAACTTTGGCATATATTCATAGCAA 59.347 33.333 3.69 0.00 0.00 3.91
144 145 7.147312 GCAAACTTTGGCATATATTCATAGCA 58.853 34.615 3.69 0.00 0.00 3.49
145 146 7.572502 GCAAACTTTGGCATATATTCATAGC 57.427 36.000 3.69 0.00 0.00 2.97
159 160 4.381566 CGTCTAAATTTCGGCAAACTTTGG 59.618 41.667 0.00 0.00 0.00 3.28
160 161 4.973663 ACGTCTAAATTTCGGCAAACTTTG 59.026 37.500 0.00 0.00 0.00 2.77
161 162 4.973663 CACGTCTAAATTTCGGCAAACTTT 59.026 37.500 0.00 0.00 0.00 2.66
162 163 4.035909 ACACGTCTAAATTTCGGCAAACTT 59.964 37.500 0.00 0.00 0.00 2.66
163 164 3.562557 ACACGTCTAAATTTCGGCAAACT 59.437 39.130 0.00 0.00 0.00 2.66
164 165 3.880610 ACACGTCTAAATTTCGGCAAAC 58.119 40.909 0.00 0.00 0.00 2.93
165 166 4.555348 AACACGTCTAAATTTCGGCAAA 57.445 36.364 0.00 0.00 0.00 3.68
166 167 4.555348 AAACACGTCTAAATTTCGGCAA 57.445 36.364 0.00 0.00 0.00 4.52
167 168 4.377635 GCTAAACACGTCTAAATTTCGGCA 60.378 41.667 0.00 0.00 0.00 5.69
168 169 4.086574 GCTAAACACGTCTAAATTTCGGC 58.913 43.478 0.00 0.00 0.00 5.54
169 170 4.644954 GGCTAAACACGTCTAAATTTCGG 58.355 43.478 0.00 0.00 0.00 4.30
170 171 4.090354 TCGGCTAAACACGTCTAAATTTCG 59.910 41.667 0.00 0.00 0.00 3.46
171 172 5.520022 TCGGCTAAACACGTCTAAATTTC 57.480 39.130 0.00 0.00 0.00 2.17
172 173 5.467735 AGTTCGGCTAAACACGTCTAAATTT 59.532 36.000 0.00 0.00 0.00 1.82
173 174 4.992951 AGTTCGGCTAAACACGTCTAAATT 59.007 37.500 0.00 0.00 0.00 1.82
174 175 4.563061 AGTTCGGCTAAACACGTCTAAAT 58.437 39.130 0.00 0.00 0.00 1.40
175 176 3.981211 AGTTCGGCTAAACACGTCTAAA 58.019 40.909 0.00 0.00 0.00 1.85
176 177 3.648339 AGTTCGGCTAAACACGTCTAA 57.352 42.857 0.00 0.00 0.00 2.10
177 178 3.568538 GAAGTTCGGCTAAACACGTCTA 58.431 45.455 0.00 0.00 0.00 2.59
178 179 2.401351 GAAGTTCGGCTAAACACGTCT 58.599 47.619 0.00 0.00 0.00 4.18
179 180 1.123756 CGAAGTTCGGCTAAACACGTC 59.876 52.381 17.61 0.00 36.00 4.34
180 181 1.134226 CGAAGTTCGGCTAAACACGT 58.866 50.000 17.61 0.00 36.00 4.49
181 182 0.179258 GCGAAGTTCGGCTAAACACG 60.179 55.000 25.55 0.00 40.84 4.49
182 183 3.652018 GCGAAGTTCGGCTAAACAC 57.348 52.632 25.55 3.60 40.84 3.32
190 191 1.824272 AAACGTTCGGCGAAGTTCGG 61.824 55.000 27.00 15.90 44.77 4.30
191 192 0.042794 AAAACGTTCGGCGAAGTTCG 60.043 50.000 24.41 23.94 44.77 3.95
192 193 1.259770 AGAAAACGTTCGGCGAAGTTC 59.740 47.619 24.41 21.22 44.77 3.01
193 194 1.292992 AGAAAACGTTCGGCGAAGTT 58.707 45.000 24.41 23.29 44.77 2.66
194 195 1.292992 AAGAAAACGTTCGGCGAAGT 58.707 45.000 24.41 19.09 44.77 3.01
195 196 2.378507 AAAGAAAACGTTCGGCGAAG 57.621 45.000 24.41 18.45 44.77 3.79
196 197 2.828874 AAAAGAAAACGTTCGGCGAA 57.171 40.000 19.83 19.83 44.77 4.70
197 198 2.828874 AAAAAGAAAACGTTCGGCGA 57.171 40.000 4.99 4.99 44.77 5.54
213 214 0.825840 CCCCCAGGCTCGTTCAAAAA 60.826 55.000 0.00 0.00 0.00 1.94
214 215 1.228429 CCCCCAGGCTCGTTCAAAA 60.228 57.895 0.00 0.00 0.00 2.44
215 216 2.434331 CCCCCAGGCTCGTTCAAA 59.566 61.111 0.00 0.00 0.00 2.69
237 238 4.135153 CTCAGTCGTCGCCCCAGG 62.135 72.222 0.00 0.00 0.00 4.45
238 239 4.135153 CCTCAGTCGTCGCCCCAG 62.135 72.222 0.00 0.00 0.00 4.45
239 240 4.671590 TCCTCAGTCGTCGCCCCA 62.672 66.667 0.00 0.00 0.00 4.96
240 241 4.131088 GTCCTCAGTCGTCGCCCC 62.131 72.222 0.00 0.00 0.00 5.80
241 242 1.716826 CTAGTCCTCAGTCGTCGCCC 61.717 65.000 0.00 0.00 0.00 6.13
242 243 1.722677 CTAGTCCTCAGTCGTCGCC 59.277 63.158 0.00 0.00 0.00 5.54
243 244 1.062845 GCTAGTCCTCAGTCGTCGC 59.937 63.158 0.00 0.00 0.00 5.19
244 245 0.653636 GAGCTAGTCCTCAGTCGTCG 59.346 60.000 0.00 0.00 0.00 5.12
245 246 1.399089 GTGAGCTAGTCCTCAGTCGTC 59.601 57.143 0.74 0.00 42.14 4.20
246 247 1.455248 GTGAGCTAGTCCTCAGTCGT 58.545 55.000 0.74 0.00 42.14 4.34
247 248 0.736053 GGTGAGCTAGTCCTCAGTCG 59.264 60.000 0.74 0.00 42.14 4.18
248 249 1.107945 GGGTGAGCTAGTCCTCAGTC 58.892 60.000 0.74 0.00 42.14 3.51
249 250 0.324830 GGGGTGAGCTAGTCCTCAGT 60.325 60.000 0.74 0.00 42.14 3.41
250 251 1.045911 GGGGGTGAGCTAGTCCTCAG 61.046 65.000 0.74 0.00 42.14 3.35
251 252 1.001760 GGGGGTGAGCTAGTCCTCA 59.998 63.158 0.00 0.00 39.42 3.86
252 253 1.001760 TGGGGGTGAGCTAGTCCTC 59.998 63.158 0.00 0.00 0.00 3.71
253 254 1.002274 CTGGGGGTGAGCTAGTCCT 59.998 63.158 0.00 0.00 0.00 3.85
254 255 2.066999 CCTGGGGGTGAGCTAGTCC 61.067 68.421 0.00 0.00 0.00 3.85
255 256 2.736826 GCCTGGGGGTGAGCTAGTC 61.737 68.421 0.00 0.00 34.45 2.59
256 257 2.689034 GCCTGGGGGTGAGCTAGT 60.689 66.667 0.00 0.00 34.45 2.57
257 258 3.483869 GGCCTGGGGGTGAGCTAG 61.484 72.222 0.00 0.00 34.45 3.42
261 262 2.499303 AAAATCGGCCTGGGGGTGAG 62.499 60.000 0.00 0.00 34.45 3.51
262 263 2.087857 AAAAATCGGCCTGGGGGTGA 62.088 55.000 0.00 0.00 34.45 4.02
263 264 1.609210 AAAAATCGGCCTGGGGGTG 60.609 57.895 0.00 0.00 34.45 4.61
264 265 2.858655 AAAAATCGGCCTGGGGGT 59.141 55.556 0.00 0.00 34.45 4.95
278 279 3.972276 GGTGAGCCGGCGCAAAAA 61.972 61.111 34.87 9.47 37.52 1.94
279 280 4.947147 AGGTGAGCCGGCGCAAAA 62.947 61.111 34.87 9.90 40.50 2.44
292 293 0.673644 AAAATCGTCGCCTGGAGGTG 60.674 55.000 0.00 0.00 46.72 4.00
293 294 0.899720 TAAAATCGTCGCCTGGAGGT 59.100 50.000 0.00 0.00 37.57 3.85
294 295 1.571919 CTAAAATCGTCGCCTGGAGG 58.428 55.000 0.00 0.00 38.53 4.30
295 296 1.571919 CCTAAAATCGTCGCCTGGAG 58.428 55.000 0.00 0.00 0.00 3.86
296 297 0.461339 GCCTAAAATCGTCGCCTGGA 60.461 55.000 0.00 0.00 0.00 3.86
297 298 1.762222 CGCCTAAAATCGTCGCCTGG 61.762 60.000 0.00 0.00 0.00 4.45
298 299 1.082117 ACGCCTAAAATCGTCGCCTG 61.082 55.000 0.00 0.00 33.09 4.85
299 300 0.804933 GACGCCTAAAATCGTCGCCT 60.805 55.000 0.00 0.00 44.18 5.52
300 301 1.634753 GACGCCTAAAATCGTCGCC 59.365 57.895 0.00 0.00 44.18 5.54
304 305 1.134788 CCAGAGGACGCCTAAAATCGT 60.135 52.381 0.00 0.00 42.09 3.73
305 306 1.136305 TCCAGAGGACGCCTAAAATCG 59.864 52.381 0.00 0.00 31.76 3.34
306 307 2.827652 CTCCAGAGGACGCCTAAAATC 58.172 52.381 0.00 0.00 31.76 2.17
307 308 2.990066 CTCCAGAGGACGCCTAAAAT 57.010 50.000 0.00 0.00 31.76 1.82
319 320 3.320541 CAGCTATAGTTGACCCTCCAGAG 59.679 52.174 10.88 0.00 0.00 3.35
320 321 3.300388 CAGCTATAGTTGACCCTCCAGA 58.700 50.000 10.88 0.00 0.00 3.86
321 322 2.366916 CCAGCTATAGTTGACCCTCCAG 59.633 54.545 17.34 0.00 0.00 3.86
322 323 2.398588 CCAGCTATAGTTGACCCTCCA 58.601 52.381 17.34 0.00 0.00 3.86
323 324 1.070914 GCCAGCTATAGTTGACCCTCC 59.929 57.143 17.34 0.00 0.00 4.30
324 325 1.070914 GGCCAGCTATAGTTGACCCTC 59.929 57.143 17.34 2.26 0.00 4.30
325 326 1.132500 GGCCAGCTATAGTTGACCCT 58.868 55.000 17.34 0.00 0.00 4.34
326 327 0.837272 TGGCCAGCTATAGTTGACCC 59.163 55.000 17.26 15.92 28.16 4.46
327 328 2.710096 TTGGCCAGCTATAGTTGACC 57.290 50.000 17.34 15.58 29.93 4.02
328 329 3.316308 CCATTTGGCCAGCTATAGTTGAC 59.684 47.826 17.34 6.26 0.00 3.18
329 330 3.554934 CCATTTGGCCAGCTATAGTTGA 58.445 45.455 17.34 0.00 0.00 3.18
330 331 2.624838 CCCATTTGGCCAGCTATAGTTG 59.375 50.000 5.11 9.49 0.00 3.16
331 332 2.949447 CCCATTTGGCCAGCTATAGTT 58.051 47.619 5.11 0.00 0.00 2.24
332 333 2.664402 CCCATTTGGCCAGCTATAGT 57.336 50.000 5.11 0.00 0.00 2.12
343 344 0.321210 GAAAAACCCGGCCCATTTGG 60.321 55.000 0.00 0.00 37.09 3.28
344 345 0.669012 CGAAAAACCCGGCCCATTTG 60.669 55.000 0.00 0.00 0.00 2.32
345 346 1.668867 CGAAAAACCCGGCCCATTT 59.331 52.632 0.00 0.00 0.00 2.32
346 347 2.279810 CCGAAAAACCCGGCCCATT 61.280 57.895 0.00 0.00 40.54 3.16
347 348 2.678580 CCGAAAAACCCGGCCCAT 60.679 61.111 0.00 0.00 40.54 4.00
348 349 4.978705 CCCGAAAAACCCGGCCCA 62.979 66.667 0.00 0.00 45.24 5.36
396 397 4.641645 TGTCGTGCCTGGCCCAAG 62.642 66.667 17.53 4.85 0.00 3.61
397 398 4.947147 GTGTCGTGCCTGGCCCAA 62.947 66.667 17.53 0.00 0.00 4.12
402 403 2.149803 TTAGACCGTGTCGTGCCTGG 62.150 60.000 0.00 0.00 37.67 4.45
403 404 0.319211 TTTAGACCGTGTCGTGCCTG 60.319 55.000 0.00 0.00 37.67 4.85
404 405 0.319297 GTTTAGACCGTGTCGTGCCT 60.319 55.000 0.00 0.00 37.67 4.75
405 406 1.611592 CGTTTAGACCGTGTCGTGCC 61.612 60.000 0.00 0.00 37.67 5.01
406 407 1.611592 CCGTTTAGACCGTGTCGTGC 61.612 60.000 0.00 0.00 37.67 5.34
407 408 1.005294 CCCGTTTAGACCGTGTCGTG 61.005 60.000 0.00 0.00 37.67 4.35
408 409 1.286880 CCCGTTTAGACCGTGTCGT 59.713 57.895 0.00 0.00 37.67 4.34
409 410 2.090524 GCCCGTTTAGACCGTGTCG 61.091 63.158 0.00 0.00 37.67 4.35
410 411 1.739196 GGCCCGTTTAGACCGTGTC 60.739 63.158 0.00 0.00 0.00 3.67
411 412 2.344872 GGCCCGTTTAGACCGTGT 59.655 61.111 0.00 0.00 0.00 4.49
412 413 2.812178 CGGCCCGTTTAGACCGTG 60.812 66.667 0.00 0.00 40.77 4.94
413 414 4.073200 CCGGCCCGTTTAGACCGT 62.073 66.667 0.85 0.00 44.14 4.83
414 415 4.825252 CCCGGCCCGTTTAGACCG 62.825 72.222 0.85 0.00 45.21 4.79
490 491 3.864218 TATAATCGGGTCGTGCCGTGC 62.864 57.143 0.00 0.00 38.44 5.34
491 492 0.031043 TATAATCGGGTCGTGCCGTG 59.969 55.000 0.00 0.00 38.44 4.94
492 493 0.963962 ATATAATCGGGTCGTGCCGT 59.036 50.000 0.00 0.00 38.44 5.68
493 494 2.925578 TATATAATCGGGTCGTGCCG 57.074 50.000 0.00 0.00 38.44 5.69
494 495 6.490566 AAAAATATATAATCGGGTCGTGCC 57.509 37.500 0.00 0.00 0.00 5.01
527 528 9.224486 ACATGTTGGGCCATATATAGATGTATA 57.776 33.333 14.29 0.00 0.00 1.47
528 529 8.106017 ACATGTTGGGCCATATATAGATGTAT 57.894 34.615 14.29 0.00 0.00 2.29
529 530 7.509236 ACATGTTGGGCCATATATAGATGTA 57.491 36.000 14.29 0.00 0.00 2.29
530 531 6.392911 ACATGTTGGGCCATATATAGATGT 57.607 37.500 7.26 9.71 0.00 3.06
531 532 8.806429 TTTACATGTTGGGCCATATATAGATG 57.194 34.615 7.26 8.99 0.00 2.90
532 533 9.821240 TTTTTACATGTTGGGCCATATATAGAT 57.179 29.630 7.26 0.00 0.00 1.98
533 534 9.821240 ATTTTTACATGTTGGGCCATATATAGA 57.179 29.630 7.26 0.00 0.00 1.98
536 537 9.034800 CCTATTTTTACATGTTGGGCCATATAT 57.965 33.333 7.26 0.00 0.00 0.86
537 538 7.039363 GCCTATTTTTACATGTTGGGCCATATA 60.039 37.037 7.26 0.00 0.00 0.86
538 539 6.239572 GCCTATTTTTACATGTTGGGCCATAT 60.240 38.462 7.26 1.89 0.00 1.78
539 540 5.069781 GCCTATTTTTACATGTTGGGCCATA 59.930 40.000 7.26 0.00 0.00 2.74
540 541 4.141733 GCCTATTTTTACATGTTGGGCCAT 60.142 41.667 7.26 0.00 0.00 4.40
541 542 3.196685 GCCTATTTTTACATGTTGGGCCA 59.803 43.478 0.00 0.00 0.00 5.36
542 543 3.450817 AGCCTATTTTTACATGTTGGGCC 59.549 43.478 15.83 0.00 37.98 5.80
543 544 4.736126 AGCCTATTTTTACATGTTGGGC 57.264 40.909 12.57 12.57 37.57 5.36
572 573 3.482786 CTTGTTATTTGACGCACTGAGC 58.517 45.455 0.00 0.00 40.87 4.26
573 574 3.187227 AGCTTGTTATTTGACGCACTGAG 59.813 43.478 0.00 0.00 0.00 3.35
574 575 3.138304 AGCTTGTTATTTGACGCACTGA 58.862 40.909 0.00 0.00 0.00 3.41
575 576 3.542712 AGCTTGTTATTTGACGCACTG 57.457 42.857 0.00 0.00 0.00 3.66
576 577 5.682943 TTTAGCTTGTTATTTGACGCACT 57.317 34.783 0.00 0.00 0.00 4.40
577 578 6.741448 TTTTTAGCTTGTTATTTGACGCAC 57.259 33.333 0.00 0.00 0.00 5.34
578 579 7.269511 CGTATTTTTAGCTTGTTATTTGACGCA 59.730 33.333 0.00 0.00 0.00 5.24
579 580 7.588834 CGTATTTTTAGCTTGTTATTTGACGC 58.411 34.615 0.00 0.00 0.00 5.19
580 581 7.509381 CGCGTATTTTTAGCTTGTTATTTGACG 60.509 37.037 0.00 0.00 0.00 4.35
581 582 7.253190 CCGCGTATTTTTAGCTTGTTATTTGAC 60.253 37.037 4.92 0.00 0.00 3.18
582 583 6.743627 CCGCGTATTTTTAGCTTGTTATTTGA 59.256 34.615 4.92 0.00 0.00 2.69
583 584 6.505732 GCCGCGTATTTTTAGCTTGTTATTTG 60.506 38.462 4.92 0.00 0.00 2.32
584 585 5.513849 GCCGCGTATTTTTAGCTTGTTATTT 59.486 36.000 4.92 0.00 0.00 1.40
585 586 5.032220 GCCGCGTATTTTTAGCTTGTTATT 58.968 37.500 4.92 0.00 0.00 1.40
586 587 4.496840 GGCCGCGTATTTTTAGCTTGTTAT 60.497 41.667 4.92 0.00 0.00 1.89
587 588 3.181508 GGCCGCGTATTTTTAGCTTGTTA 60.182 43.478 4.92 0.00 0.00 2.41
588 589 2.414957 GGCCGCGTATTTTTAGCTTGTT 60.415 45.455 4.92 0.00 0.00 2.83
589 590 1.131693 GGCCGCGTATTTTTAGCTTGT 59.868 47.619 4.92 0.00 0.00 3.16
590 591 1.533129 GGGCCGCGTATTTTTAGCTTG 60.533 52.381 4.92 0.00 0.00 4.01
591 592 0.736636 GGGCCGCGTATTTTTAGCTT 59.263 50.000 4.92 0.00 0.00 3.74
592 593 0.393267 TGGGCCGCGTATTTTTAGCT 60.393 50.000 4.92 0.00 0.00 3.32
593 594 0.248336 GTGGGCCGCGTATTTTTAGC 60.248 55.000 4.92 0.00 0.00 3.09
594 595 0.379316 GGTGGGCCGCGTATTTTTAG 59.621 55.000 11.61 0.00 0.00 1.85
595 596 2.480100 GGTGGGCCGCGTATTTTTA 58.520 52.632 11.61 0.00 0.00 1.52
596 597 3.280211 GGTGGGCCGCGTATTTTT 58.720 55.556 11.61 0.00 0.00 1.94
606 607 3.428282 CGTTTAGCACGGTGGGCC 61.428 66.667 10.60 0.00 45.89 5.80
614 615 2.255881 ACGTTGGCCCGTTTAGCAC 61.256 57.895 0.00 0.00 37.96 4.40
615 616 2.111460 ACGTTGGCCCGTTTAGCA 59.889 55.556 0.00 0.00 37.96 3.49
616 617 2.559330 CACGTTGGCCCGTTTAGC 59.441 61.111 4.13 0.00 39.45 3.09
617 618 2.559330 GCACGTTGGCCCGTTTAG 59.441 61.111 4.13 0.00 39.45 1.85
631 632 1.375780 TTAGTAAACGGGCCGGCAC 60.376 57.895 31.78 26.77 0.00 5.01
632 633 1.375780 GTTAGTAAACGGGCCGGCA 60.376 57.895 31.78 11.85 0.00 5.69
633 634 1.078918 AGTTAGTAAACGGGCCGGC 60.079 57.895 31.78 21.18 40.73 6.13
634 635 0.741927 CCAGTTAGTAAACGGGCCGG 60.742 60.000 31.78 12.53 42.77 6.13
635 636 0.741927 CCCAGTTAGTAAACGGGCCG 60.742 60.000 27.06 27.06 46.22 6.13
636 637 3.164026 CCCAGTTAGTAAACGGGCC 57.836 57.895 0.00 0.00 46.22 5.80
638 639 0.741927 CGGCCCAGTTAGTAAACGGG 60.742 60.000 11.93 11.93 46.88 5.28
639 640 0.037046 ACGGCCCAGTTAGTAAACGG 60.037 55.000 0.00 0.00 40.73 4.44
640 641 1.073177 CACGGCCCAGTTAGTAAACG 58.927 55.000 0.00 0.00 40.73 3.60
641 642 0.800631 GCACGGCCCAGTTAGTAAAC 59.199 55.000 0.00 0.00 35.72 2.01
642 643 0.321830 GGCACGGCCCAGTTAGTAAA 60.322 55.000 0.00 0.00 44.06 2.01
643 644 1.297364 GGCACGGCCCAGTTAGTAA 59.703 57.895 0.00 0.00 44.06 2.24
644 645 2.983791 GGCACGGCCCAGTTAGTA 59.016 61.111 0.00 0.00 44.06 1.82
689 690 2.287457 TATACGGGTCGTGCTGTGCC 62.287 60.000 3.03 0.00 41.39 5.01
690 691 0.870307 CTATACGGGTCGTGCTGTGC 60.870 60.000 3.03 0.00 41.39 4.57
691 692 0.454600 ACTATACGGGTCGTGCTGTG 59.545 55.000 3.03 0.00 41.39 3.66
692 693 2.042686 TACTATACGGGTCGTGCTGT 57.957 50.000 3.03 2.17 41.39 4.40
693 694 3.562505 GATTACTATACGGGTCGTGCTG 58.437 50.000 3.03 0.00 41.39 4.41
694 695 2.225019 CGATTACTATACGGGTCGTGCT 59.775 50.000 3.03 0.00 41.39 4.40
695 696 2.031682 ACGATTACTATACGGGTCGTGC 60.032 50.000 3.03 0.00 41.39 5.34
696 697 3.885484 ACGATTACTATACGGGTCGTG 57.115 47.619 3.03 0.00 41.39 4.35
697 698 2.031682 GCACGATTACTATACGGGTCGT 60.032 50.000 0.00 0.00 44.35 4.34
698 699 2.578495 GCACGATTACTATACGGGTCG 58.422 52.381 0.00 0.00 32.80 4.79
699 700 2.352127 GGGCACGATTACTATACGGGTC 60.352 54.545 0.00 0.00 34.22 4.46
700 701 1.615392 GGGCACGATTACTATACGGGT 59.385 52.381 0.00 0.00 32.80 5.28
701 702 1.891150 AGGGCACGATTACTATACGGG 59.109 52.381 0.00 0.00 0.00 5.28
702 703 2.352421 CCAGGGCACGATTACTATACGG 60.352 54.545 0.00 0.00 0.00 4.02
703 704 2.925306 GCCAGGGCACGATTACTATACG 60.925 54.545 5.20 0.00 41.49 3.06
704 705 2.685100 GCCAGGGCACGATTACTATAC 58.315 52.381 5.20 0.00 41.49 1.47
705 706 1.271379 CGCCAGGGCACGATTACTATA 59.729 52.381 11.42 0.00 42.06 1.31
706 707 0.033504 CGCCAGGGCACGATTACTAT 59.966 55.000 11.42 0.00 42.06 2.12
707 708 1.440060 CGCCAGGGCACGATTACTA 59.560 57.895 11.42 0.00 42.06 1.82
708 709 2.186903 CGCCAGGGCACGATTACT 59.813 61.111 11.42 0.00 42.06 2.24
709 710 2.895372 CCGCCAGGGCACGATTAC 60.895 66.667 11.42 0.00 42.06 1.89
733 734 4.169696 TAATCGTGCCTGGCCCGG 62.170 66.667 22.84 9.24 0.00 5.73
734 735 2.895372 GTAATCGTGCCTGGCCCG 60.895 66.667 17.67 17.67 0.00 6.13
735 736 2.862674 TTCGTAATCGTGCCTGGCCC 62.863 60.000 17.53 2.94 38.33 5.80
736 737 0.814010 ATTCGTAATCGTGCCTGGCC 60.814 55.000 17.53 6.66 38.33 5.36
737 738 0.304705 CATTCGTAATCGTGCCTGGC 59.695 55.000 12.87 12.87 38.33 4.85
738 739 0.937304 CCATTCGTAATCGTGCCTGG 59.063 55.000 0.00 0.00 38.33 4.45
739 740 0.937304 CCCATTCGTAATCGTGCCTG 59.063 55.000 0.00 0.00 38.33 4.85
740 741 0.814010 GCCCATTCGTAATCGTGCCT 60.814 55.000 0.00 0.00 38.33 4.75
741 742 1.647084 GCCCATTCGTAATCGTGCC 59.353 57.895 0.00 0.00 38.33 5.01
742 743 1.647084 GGCCCATTCGTAATCGTGC 59.353 57.895 0.00 0.00 38.33 5.34
743 744 1.495584 CCGGCCCATTCGTAATCGTG 61.496 60.000 0.00 0.00 38.33 4.35
744 745 1.227438 CCGGCCCATTCGTAATCGT 60.227 57.895 0.00 0.00 38.33 3.73
745 746 1.959226 CCCGGCCCATTCGTAATCG 60.959 63.158 0.00 0.00 38.55 3.34
746 747 2.258726 GCCCGGCCCATTCGTAATC 61.259 63.158 0.00 0.00 0.00 1.75
747 748 2.203294 GCCCGGCCCATTCGTAAT 60.203 61.111 0.00 0.00 0.00 1.89
748 749 4.493049 GGCCCGGCCCATTCGTAA 62.493 66.667 18.83 0.00 44.06 3.18
783 784 1.752694 CCATACCTGGCCAAACCGG 60.753 63.158 7.01 7.12 45.52 5.28
784 785 1.752694 CCCATACCTGGCCAAACCG 60.753 63.158 7.01 0.00 43.94 4.44
785 786 1.381191 CCCCATACCTGGCCAAACC 60.381 63.158 7.01 0.00 41.64 3.27
786 787 2.058001 GCCCCATACCTGGCCAAAC 61.058 63.158 7.01 0.00 41.97 2.93
787 788 2.362565 GCCCCATACCTGGCCAAA 59.637 61.111 7.01 0.00 41.97 3.28
792 793 2.124320 CGTTGGCCCCATACCTGG 60.124 66.667 0.00 0.00 42.73 4.45
793 794 2.124320 CCGTTGGCCCCATACCTG 60.124 66.667 0.00 0.00 0.00 4.00
794 795 3.416880 CCCGTTGGCCCCATACCT 61.417 66.667 0.00 0.00 0.00 3.08
795 796 3.735097 ACCCGTTGGCCCCATACC 61.735 66.667 0.00 0.00 33.59 2.73
796 797 2.439519 CACCCGTTGGCCCCATAC 60.440 66.667 0.00 0.00 33.59 2.39
797 798 3.733972 CCACCCGTTGGCCCCATA 61.734 66.667 0.00 0.00 39.07 2.74
801 802 3.728373 ATCTCCACCCGTTGGCCC 61.728 66.667 0.00 0.00 46.47 5.80
802 803 2.438434 CATCTCCACCCGTTGGCC 60.438 66.667 0.00 0.00 46.47 5.36
803 804 2.252072 TAGCATCTCCACCCGTTGGC 62.252 60.000 0.00 0.00 46.47 4.52
805 806 2.332063 AATAGCATCTCCACCCGTTG 57.668 50.000 0.00 0.00 0.00 4.10
806 807 5.407407 CTATAATAGCATCTCCACCCGTT 57.593 43.478 0.00 0.00 0.00 4.44
820 821 7.985752 TGATGGCTCATGAGATTGCTATAATAG 59.014 37.037 27.04 0.00 0.00 1.73
821 822 7.767659 GTGATGGCTCATGAGATTGCTATAATA 59.232 37.037 27.04 3.08 32.98 0.98
822 823 6.598457 GTGATGGCTCATGAGATTGCTATAAT 59.402 38.462 27.04 5.25 32.98 1.28
823 824 5.936372 GTGATGGCTCATGAGATTGCTATAA 59.064 40.000 27.04 5.46 32.98 0.98
824 825 5.012354 TGTGATGGCTCATGAGATTGCTATA 59.988 40.000 27.04 2.88 32.98 1.31
825 826 4.202430 TGTGATGGCTCATGAGATTGCTAT 60.202 41.667 27.04 14.59 32.98 2.97
826 827 3.135167 TGTGATGGCTCATGAGATTGCTA 59.865 43.478 27.04 10.06 32.98 3.49
827 828 2.092592 TGTGATGGCTCATGAGATTGCT 60.093 45.455 27.04 5.22 32.98 3.91
828 829 2.294979 TGTGATGGCTCATGAGATTGC 58.705 47.619 27.04 11.53 32.98 3.56
829 830 5.281727 CAAATGTGATGGCTCATGAGATTG 58.718 41.667 27.04 11.21 32.98 2.67
830 831 4.341235 CCAAATGTGATGGCTCATGAGATT 59.659 41.667 27.04 11.81 32.98 2.40
831 832 3.889538 CCAAATGTGATGGCTCATGAGAT 59.110 43.478 27.04 11.77 32.98 2.75
832 833 3.284617 CCAAATGTGATGGCTCATGAGA 58.715 45.455 27.04 6.75 32.98 3.27
833 834 3.710326 CCAAATGTGATGGCTCATGAG 57.290 47.619 18.84 18.84 32.98 2.90
841 842 1.271934 TCGTTTGGCCAAATGTGATGG 59.728 47.619 37.35 20.15 41.08 3.51
842 843 2.327568 GTCGTTTGGCCAAATGTGATG 58.672 47.619 37.35 21.34 38.22 3.07
843 844 1.272212 GGTCGTTTGGCCAAATGTGAT 59.728 47.619 37.35 0.00 38.22 3.06
844 845 0.671251 GGTCGTTTGGCCAAATGTGA 59.329 50.000 37.35 28.78 38.22 3.58
845 846 0.673437 AGGTCGTTTGGCCAAATGTG 59.327 50.000 37.35 27.37 38.22 3.21
846 847 0.673437 CAGGTCGTTTGGCCAAATGT 59.327 50.000 37.35 23.18 38.22 2.71
847 848 0.673437 ACAGGTCGTTTGGCCAAATG 59.327 50.000 35.20 35.20 38.35 2.32
848 849 0.958822 GACAGGTCGTTTGGCCAAAT 59.041 50.000 32.52 15.82 32.36 2.32
849 850 0.106918 AGACAGGTCGTTTGGCCAAA 60.107 50.000 27.13 27.13 34.09 3.28
850 851 0.106918 AAGACAGGTCGTTTGGCCAA 60.107 50.000 16.05 16.05 34.09 4.52
851 852 0.759959 TAAGACAGGTCGTTTGGCCA 59.240 50.000 0.00 0.00 34.09 5.36
852 853 1.001633 TCTAAGACAGGTCGTTTGGCC 59.998 52.381 0.00 0.00 34.09 5.36
853 854 2.450609 TCTAAGACAGGTCGTTTGGC 57.549 50.000 0.00 0.00 34.09 4.52
854 855 5.744666 TTTTTCTAAGACAGGTCGTTTGG 57.255 39.130 0.00 0.00 34.09 3.28
876 877 9.717942 GAGGATGCAGTATTAGACATAGATTTT 57.282 33.333 0.00 0.00 0.00 1.82
877 878 9.099071 AGAGGATGCAGTATTAGACATAGATTT 57.901 33.333 0.00 0.00 0.00 2.17
878 879 8.663209 AGAGGATGCAGTATTAGACATAGATT 57.337 34.615 0.00 0.00 0.00 2.40
879 880 8.663209 AAGAGGATGCAGTATTAGACATAGAT 57.337 34.615 0.00 0.00 0.00 1.98
880 881 7.947332 AGAAGAGGATGCAGTATTAGACATAGA 59.053 37.037 0.00 0.00 0.00 1.98
881 882 8.121305 AGAAGAGGATGCAGTATTAGACATAG 57.879 38.462 0.00 0.00 0.00 2.23
882 883 8.484214 AAGAAGAGGATGCAGTATTAGACATA 57.516 34.615 0.00 0.00 0.00 2.29
883 884 6.992664 AGAAGAGGATGCAGTATTAGACAT 57.007 37.500 0.00 0.00 0.00 3.06
884 885 6.183360 GGAAGAAGAGGATGCAGTATTAGACA 60.183 42.308 0.00 0.00 0.00 3.41
885 886 6.041523 AGGAAGAAGAGGATGCAGTATTAGAC 59.958 42.308 0.00 0.00 0.00 2.59
886 887 6.139671 AGGAAGAAGAGGATGCAGTATTAGA 58.860 40.000 0.00 0.00 0.00 2.10
887 888 6.418057 AGGAAGAAGAGGATGCAGTATTAG 57.582 41.667 0.00 0.00 0.00 1.73
888 889 5.305644 GGAGGAAGAAGAGGATGCAGTATTA 59.694 44.000 0.00 0.00 0.00 0.98
889 890 4.102367 GGAGGAAGAAGAGGATGCAGTATT 59.898 45.833 0.00 0.00 0.00 1.89
890 891 3.645687 GGAGGAAGAAGAGGATGCAGTAT 59.354 47.826 0.00 0.00 0.00 2.12
891 892 3.034635 GGAGGAAGAAGAGGATGCAGTA 58.965 50.000 0.00 0.00 0.00 2.74
892 893 1.836802 GGAGGAAGAAGAGGATGCAGT 59.163 52.381 0.00 0.00 0.00 4.40
893 894 2.102925 GAGGAGGAAGAAGAGGATGCAG 59.897 54.545 0.00 0.00 0.00 4.41
894 895 2.114616 GAGGAGGAAGAAGAGGATGCA 58.885 52.381 0.00 0.00 0.00 3.96
895 896 2.102925 CTGAGGAGGAAGAAGAGGATGC 59.897 54.545 0.00 0.00 0.00 3.91
896 897 2.102925 GCTGAGGAGGAAGAAGAGGATG 59.897 54.545 0.00 0.00 0.00 3.51
897 898 2.397597 GCTGAGGAGGAAGAAGAGGAT 58.602 52.381 0.00 0.00 0.00 3.24
900 901 0.829990 GGGCTGAGGAGGAAGAAGAG 59.170 60.000 0.00 0.00 0.00 2.85
935 936 2.680439 TGGGAGAGGATAAAAGGGGT 57.320 50.000 0.00 0.00 0.00 4.95
944 945 2.972153 AGTAGGGTTTGGGAGAGGAT 57.028 50.000 0.00 0.00 0.00 3.24
945 946 2.384375 TGTAGTAGGGTTTGGGAGAGGA 59.616 50.000 0.00 0.00 0.00 3.71
947 948 4.903045 TTTGTAGTAGGGTTTGGGAGAG 57.097 45.455 0.00 0.00 0.00 3.20
963 964 5.494632 TGCTCGATCTTACTCGATTTGTA 57.505 39.130 0.00 0.00 45.77 2.41
974 975 2.427453 GGAGTGTCCTTGCTCGATCTTA 59.573 50.000 0.00 0.00 32.53 2.10
975 976 1.205893 GGAGTGTCCTTGCTCGATCTT 59.794 52.381 0.00 0.00 32.53 2.40
1008 1023 4.115199 GCCGGTGCTTCCATCCCT 62.115 66.667 1.90 0.00 35.57 4.20
1041 1056 0.417437 TCACAGGAGGGGAGGATTCA 59.583 55.000 0.00 0.00 0.00 2.57
1096 1111 2.285180 CCTGGGGAGGAGGAGGAG 59.715 72.222 0.00 0.00 31.48 3.69
1097 1112 4.095400 GCCTGGGGAGGAGGAGGA 62.095 72.222 0.00 0.00 31.48 3.71
1411 1426 1.177401 GGGGCTTGTGGAATCAGAAC 58.823 55.000 0.00 0.00 0.00 3.01
1509 1524 7.221450 TGTGGCTATATTTATAGGTGACCAAC 58.779 38.462 3.63 0.00 36.90 3.77
1680 1701 1.901833 AGGGAGCGCAAATCCAAATTT 59.098 42.857 11.47 0.00 38.70 1.82
1765 1787 3.366396 CCTCTATCAGTAGTGGTGGTGT 58.634 50.000 0.00 0.00 37.00 4.16
1767 1789 2.023888 AGCCTCTATCAGTAGTGGTGGT 60.024 50.000 0.00 0.00 41.53 4.16
1768 1790 2.672098 AGCCTCTATCAGTAGTGGTGG 58.328 52.381 0.00 0.00 41.53 4.61
1771 1793 4.465886 AGTGTAGCCTCTATCAGTAGTGG 58.534 47.826 0.00 0.42 42.10 4.00
1772 1794 4.517453 GGAGTGTAGCCTCTATCAGTAGTG 59.483 50.000 0.00 0.00 0.00 2.74
1773 1795 4.446600 GGGAGTGTAGCCTCTATCAGTAGT 60.447 50.000 0.00 0.00 0.00 2.73
1774 1796 4.076394 GGGAGTGTAGCCTCTATCAGTAG 58.924 52.174 0.00 0.00 0.00 2.57
1775 1797 3.496337 CGGGAGTGTAGCCTCTATCAGTA 60.496 52.174 0.00 0.00 0.00 2.74
1776 1798 2.750135 CGGGAGTGTAGCCTCTATCAGT 60.750 54.545 0.00 0.00 0.00 3.41
1777 1799 1.883275 CGGGAGTGTAGCCTCTATCAG 59.117 57.143 0.00 0.00 0.00 2.90
1778 1800 1.478837 CCGGGAGTGTAGCCTCTATCA 60.479 57.143 0.00 0.00 0.00 2.15
1780 1802 0.851469 TCCGGGAGTGTAGCCTCTAT 59.149 55.000 0.00 0.00 0.00 1.98
1782 1804 1.076632 CTCCGGGAGTGTAGCCTCT 60.077 63.158 16.15 0.00 0.00 3.69
1784 1806 1.934459 TAGCTCCGGGAGTGTAGCCT 61.934 60.000 24.30 14.08 35.54 4.58
1785 1807 1.455217 TAGCTCCGGGAGTGTAGCC 60.455 63.158 24.30 7.39 35.54 3.93
1786 1808 1.734748 GTAGCTCCGGGAGTGTAGC 59.265 63.158 24.30 11.27 35.16 3.58
1974 3274 2.159787 GCTGTAGAGACACGCAACATTG 60.160 50.000 0.00 0.00 32.92 2.82
2019 3319 2.491022 CGGCTCCGGGAGAGTTAGG 61.491 68.421 27.95 0.06 45.21 2.69
2356 3659 1.448985 GATAGCTGACCAAACGGCAA 58.551 50.000 0.00 0.00 43.72 4.52
2660 3969 0.178953 AATTCCCTTGGTGTGCAGCT 60.179 50.000 0.00 0.00 0.00 4.24
2815 4127 4.672862 CGCATCATCGTCAGTAAAGTAGAG 59.327 45.833 0.00 0.00 0.00 2.43
2833 4145 5.333339 CCTTATGCACAGTTATGTACGCATC 60.333 44.000 8.82 0.00 42.34 3.91
2997 4312 1.064389 GCCTTCTTGAACCAGCCCTAT 60.064 52.381 0.00 0.00 0.00 2.57
3004 4319 5.642063 CGTCTTATTAAGCCTTCTTGAACCA 59.358 40.000 0.00 0.00 33.85 3.67
3062 4377 3.131478 GGCCTACGCAATGCCGTT 61.131 61.111 0.00 0.00 42.20 4.44
3118 4433 4.768130 TTGTCTTTGTGTCGTTGGAAAA 57.232 36.364 0.00 0.00 0.00 2.29
3207 4537 8.791355 AATAAAACAGACACGTTATTGAAACC 57.209 30.769 0.00 0.00 0.00 3.27
3214 4544 8.447833 CCACACATAATAAAACAGACACGTTAT 58.552 33.333 0.00 0.00 0.00 1.89
3215 4545 7.441760 ACCACACATAATAAAACAGACACGTTA 59.558 33.333 0.00 0.00 0.00 3.18
3269 4601 1.168407 AGCCACACACACACATCAGC 61.168 55.000 0.00 0.00 0.00 4.26
3342 7251 6.129378 CGCAAATGACAAATCACAACAAGTAG 60.129 38.462 0.00 0.00 37.79 2.57
3343 7252 5.685068 CGCAAATGACAAATCACAACAAGTA 59.315 36.000 0.00 0.00 37.79 2.24
3344 7253 4.503734 CGCAAATGACAAATCACAACAAGT 59.496 37.500 0.00 0.00 37.79 3.16
3366 7275 2.428530 TCCAGTGATCATCAGAAGTCCG 59.571 50.000 0.00 0.00 0.00 4.79
3404 7313 5.882557 GGAACTCATCTCATGGCTAGAAAAA 59.117 40.000 0.00 0.00 0.00 1.94
3408 7358 3.921104 AGGAACTCATCTCATGGCTAGA 58.079 45.455 0.00 0.00 0.00 2.43
3478 7428 3.692101 CAGTAACAGAGATCAGAGACGGT 59.308 47.826 0.00 0.00 0.00 4.83
3532 7485 9.729281 ATCATTGCATCCAAACTTATTTTTCTT 57.271 25.926 0.00 0.00 34.05 2.52
3540 7493 7.394077 TCTCTTGAATCATTGCATCCAAACTTA 59.606 33.333 0.00 0.00 34.05 2.24
3615 7568 3.311871 CAGCAGCAGTTCAGATTCATACC 59.688 47.826 0.00 0.00 0.00 2.73
3725 7678 5.005094 ACCAATTGAAAGCCAAAATGATGG 58.995 37.500 7.12 0.00 43.70 3.51
3728 7681 3.814283 GCACCAATTGAAAGCCAAAATGA 59.186 39.130 7.12 0.00 38.43 2.57
3793 7746 2.294839 TGCCTAGGCCGCAAAGGTA 61.295 57.895 30.81 5.87 43.70 3.08
3914 7870 9.461312 TGTGCAATTTACAGAAGAACCTAATAT 57.539 29.630 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.