Multiple sequence alignment - TraesCS5A01G019600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G019600 chr5A 100.000 3522 0 0 1496 5017 15845217 15848738 0.000000e+00 6505.0
1 TraesCS5A01G019600 chr5A 100.000 2977 0 0 5225 8201 15848946 15851922 0.000000e+00 5498.0
2 TraesCS5A01G019600 chr5A 100.000 1096 0 0 1 1096 15843722 15844817 0.000000e+00 2025.0
3 TraesCS5A01G019600 chr5A 75.424 472 102 13 183 646 132960561 132961026 4.980000e-52 217.0
4 TraesCS5A01G019600 chr5D 96.811 2195 58 9 2800 4989 22376534 22378721 0.000000e+00 3655.0
5 TraesCS5A01G019600 chr5D 93.958 1506 66 10 6223 7720 22379915 22381403 0.000000e+00 2254.0
6 TraesCS5A01G019600 chr5D 93.570 731 34 5 5255 5980 22378713 22379435 0.000000e+00 1077.0
7 TraesCS5A01G019600 chr5D 94.793 653 28 3 2146 2797 22375831 22376478 0.000000e+00 1013.0
8 TraesCS5A01G019600 chr5D 91.042 614 37 5 1496 2095 22375221 22375830 0.000000e+00 813.0
9 TraesCS5A01G019600 chr5D 87.086 302 11 14 810 1096 22374408 22374696 4.780000e-82 316.0
10 TraesCS5A01G019600 chr5D 89.610 154 7 2 5996 6140 22379720 22379873 3.910000e-43 187.0
11 TraesCS5A01G019600 chr5D 92.523 107 8 0 69 175 53753932 53753826 3.960000e-33 154.0
12 TraesCS5A01G019600 chr5D 91.150 113 4 3 8094 8201 22381578 22381689 1.840000e-31 148.0
13 TraesCS5A01G019600 chr5D 94.366 71 4 0 715 785 22374279 22374349 8.700000e-20 110.0
14 TraesCS5A01G019600 chr5D 96.552 58 2 0 1496 1553 22375006 22375063 6.770000e-16 97.1
15 TraesCS5A01G019600 chr5D 100.000 28 0 0 4989 5016 329780450 329780477 1.500000e-02 52.8
16 TraesCS5A01G019600 chr5B 94.073 2227 88 14 2800 4989 15549068 15551287 0.000000e+00 3341.0
17 TraesCS5A01G019600 chr5B 90.455 1320 86 16 6223 7508 15552215 15553528 0.000000e+00 1703.0
18 TraesCS5A01G019600 chr5B 91.578 938 48 10 5256 6178 15551280 15552201 0.000000e+00 1266.0
19 TraesCS5A01G019600 chr5B 92.966 654 33 6 2146 2797 15548370 15549012 0.000000e+00 941.0
20 TraesCS5A01G019600 chr5B 82.975 605 62 13 1511 2095 15547784 15548367 7.340000e-140 508.0
21 TraesCS5A01G019600 chr5B 86.768 393 24 15 7817 8201 15554271 15554643 5.920000e-111 412.0
22 TraesCS5A01G019600 chr5B 84.266 286 17 16 822 1096 15546910 15547178 3.800000e-63 254.0
23 TraesCS5A01G019600 chr5B 85.632 174 18 4 1 171 244527897 244527728 8.460000e-40 176.0
24 TraesCS5A01G019600 chr5B 92.982 57 3 1 6170 6225 458149193 458149137 1.900000e-11 82.4
25 TraesCS5A01G019600 chr7B 79.773 529 97 7 183 705 135187884 135188408 7.770000e-100 375.0
26 TraesCS5A01G019600 chr7B 78.748 527 106 4 183 705 135171726 135172250 1.690000e-91 348.0
27 TraesCS5A01G019600 chr7B 81.235 405 70 6 300 700 524789041 524788639 1.030000e-83 322.0
28 TraesCS5A01G019600 chr7B 76.307 287 62 6 423 705 716619864 716619580 1.840000e-31 148.0
29 TraesCS5A01G019600 chr7B 85.246 122 18 0 183 304 524797744 524797623 8.640000e-25 126.0
30 TraesCS5A01G019600 chr4B 76.504 532 110 13 183 704 226561642 226561116 8.110000e-70 276.0
31 TraesCS5A01G019600 chr4A 83.712 264 41 2 7916 8178 676208029 676208291 1.770000e-61 248.0
32 TraesCS5A01G019600 chr7D 76.471 442 79 16 195 626 610673066 610673492 4.980000e-52 217.0
33 TraesCS5A01G019600 chr7D 75.907 386 78 11 7805 8178 394188004 394188386 5.060000e-42 183.0
34 TraesCS5A01G019600 chr7D 92.174 115 9 0 65 179 237557691 237557805 6.590000e-36 163.0
35 TraesCS5A01G019600 chr7D 90.351 114 11 0 64 177 289877684 289877571 5.130000e-32 150.0
36 TraesCS5A01G019600 chr2B 76.108 406 77 10 183 588 413048328 413048713 2.340000e-45 195.0
37 TraesCS5A01G019600 chr2B 76.471 289 65 3 7915 8201 613207000 613207287 3.960000e-33 154.0
38 TraesCS5A01G019600 chr2B 91.304 46 4 0 6177 6222 663781254 663781299 6.870000e-06 63.9
39 TraesCS5A01G019600 chr2B 100.000 28 0 0 4989 5016 359277370 359277343 1.500000e-02 52.8
40 TraesCS5A01G019600 chr2B 96.875 32 0 1 6198 6228 798324748 798324717 1.500000e-02 52.8
41 TraesCS5A01G019600 chr4D 76.166 386 77 11 7805 8178 235449441 235449823 1.090000e-43 189.0
42 TraesCS5A01G019600 chr4D 89.209 139 10 5 1 136 273926296 273926432 1.420000e-37 169.0
43 TraesCS5A01G019600 chr4D 86.239 109 13 1 1 109 285904972 285905078 5.200000e-22 117.0
44 TraesCS5A01G019600 chr4D 100.000 28 0 0 4989 5016 437292419 437292392 1.500000e-02 52.8
45 TraesCS5A01G019600 chr7A 77.481 262 59 0 328 589 398949865 398949604 3.060000e-34 158.0
46 TraesCS5A01G019600 chr6D 91.818 110 9 0 64 173 131849874 131849983 3.960000e-33 154.0
47 TraesCS5A01G019600 chr6D 89.344 122 12 1 71 192 366982995 366982875 1.430000e-32 152.0
48 TraesCS5A01G019600 chr6D 82.558 172 26 2 1 171 194003413 194003245 1.840000e-31 148.0
49 TraesCS5A01G019600 chr6D 83.333 162 18 3 1 161 301258977 301259130 3.090000e-29 141.0
50 TraesCS5A01G019600 chr2D 94.737 38 2 0 183 220 266509490 266509453 8.890000e-05 60.2
51 TraesCS5A01G019600 chr2D 100.000 30 0 0 4987 5016 185386104 185386133 1.000000e-03 56.5
52 TraesCS5A01G019600 chr2D 100.000 28 0 0 5225 5252 185386218 185386245 1.500000e-02 52.8
53 TraesCS5A01G019600 chr1D 88.636 44 4 1 260 303 4935943 4935985 1.500000e-02 52.8
54 TraesCS5A01G019600 chr1D 100.000 28 0 0 4989 5016 263872747 263872774 1.500000e-02 52.8
55 TraesCS5A01G019600 chr1B 100.000 28 0 0 4989 5016 3938103 3938076 1.500000e-02 52.8
56 TraesCS5A01G019600 chr1A 100.000 28 0 0 4989 5016 7112060 7112087 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G019600 chr5A 15843722 15851922 8200 False 4676.000000 6505 100.000000 1 8201 3 chr5A.!!$F2 8200
1 TraesCS5A01G019600 chr5D 22374279 22381689 7410 False 967.010000 3655 92.893800 715 8201 10 chr5D.!!$F2 7486
2 TraesCS5A01G019600 chr5B 15546910 15554643 7733 False 1203.571429 3341 89.011571 822 8201 7 chr5B.!!$F1 7379
3 TraesCS5A01G019600 chr7B 135187884 135188408 524 False 375.000000 375 79.773000 183 705 1 chr7B.!!$F2 522
4 TraesCS5A01G019600 chr7B 135171726 135172250 524 False 348.000000 348 78.748000 183 705 1 chr7B.!!$F1 522
5 TraesCS5A01G019600 chr4B 226561116 226561642 526 True 276.000000 276 76.504000 183 704 1 chr4B.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 440 0.111061 AAGGAGTGACATGCAGGCAA 59.889 50.000 0.00 0.0 36.65 4.52 F
1980 2456 0.035056 ATGCTCAGCCCACAACTACC 60.035 55.000 0.00 0.0 0.00 3.18 F
2023 2506 0.510359 GCAGTGCTTCGACTTCTGTG 59.490 55.000 8.18 0.0 0.00 3.66 F
2129 2614 0.537371 CCGGTTGGAAGGAGCAACTT 60.537 55.000 0.00 0.0 37.49 2.66 F
2355 2840 0.592637 TTGCACATCAGAAACTGCCG 59.407 50.000 0.00 0.0 0.00 5.69 F
2793 3279 1.000506 GTGTGGACACGCCTCTCTTAA 59.999 52.381 4.72 0.0 37.10 1.85 F
3276 3817 1.338890 TTCTGTGGACAACGGGGTCA 61.339 55.000 10.32 0.0 39.59 4.02 F
4785 5367 1.988107 ACCTGCTTGGATTTGGAGAGA 59.012 47.619 3.40 0.0 39.71 3.10 F
5694 6282 0.467804 TGCCAGGCATGCGATACTTA 59.532 50.000 11.22 0.0 31.71 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2491 0.389025 TCTGCACAGAAGTCGAAGCA 59.611 50.000 0.00 0.0 33.91 3.91 R
3042 3583 3.243839 GCCATTTCTCAAGGAAGTTTGCA 60.244 43.478 0.00 0.0 35.16 4.08 R
3979 4532 3.319689 CCAACCCAAATAACAACCGACTT 59.680 43.478 0.00 0.0 0.00 3.01 R
4029 4583 0.469917 GGAAGGCAGATCGATTCCCA 59.530 55.000 0.00 0.0 36.08 4.37 R
4151 4727 6.204108 GCAACACTAAAATACCACAGTACAGT 59.796 38.462 0.00 0.0 0.00 3.55 R
4451 5031 4.039245 CCAGACAGTCAGGTAAGAGTGAAA 59.961 45.833 2.66 0.0 40.60 2.69 R
4996 5578 0.737019 CGCCTTACGGACGCCTTAAA 60.737 55.000 0.00 0.0 38.44 1.52 R
6249 7117 0.174617 GCAGGGTGCAGACTAGAGAC 59.825 60.000 0.00 0.0 44.26 3.36 R
7286 8195 0.102300 CGGTCATCGATACCACTGCA 59.898 55.000 18.21 0.0 42.43 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.560493 CGATATATTACACGCCTCATTCTG 57.440 41.667 0.00 0.00 0.00 3.02
24 25 6.322491 CGATATATTACACGCCTCATTCTGA 58.678 40.000 0.00 0.00 0.00 3.27
25 26 6.251589 CGATATATTACACGCCTCATTCTGAC 59.748 42.308 0.00 0.00 0.00 3.51
26 27 2.380084 TTACACGCCTCATTCTGACC 57.620 50.000 0.00 0.00 0.00 4.02
27 28 1.262417 TACACGCCTCATTCTGACCA 58.738 50.000 0.00 0.00 0.00 4.02
28 29 0.396435 ACACGCCTCATTCTGACCAA 59.604 50.000 0.00 0.00 0.00 3.67
29 30 1.202758 ACACGCCTCATTCTGACCAAA 60.203 47.619 0.00 0.00 0.00 3.28
30 31 1.879380 CACGCCTCATTCTGACCAAAA 59.121 47.619 0.00 0.00 0.00 2.44
31 32 2.293122 CACGCCTCATTCTGACCAAAAA 59.707 45.455 0.00 0.00 0.00 1.94
71 72 9.959721 TTTTTGAACTAGATAGGCTGATAAGTT 57.040 29.630 0.00 1.93 0.00 2.66
72 73 9.601217 TTTTGAACTAGATAGGCTGATAAGTTC 57.399 33.333 19.30 19.30 40.94 3.01
73 74 6.971602 TGAACTAGATAGGCTGATAAGTTCG 58.028 40.000 20.07 0.00 42.56 3.95
74 75 6.771267 TGAACTAGATAGGCTGATAAGTTCGA 59.229 38.462 20.07 12.15 42.56 3.71
75 76 6.563222 ACTAGATAGGCTGATAAGTTCGAC 57.437 41.667 0.00 0.00 0.00 4.20
76 77 4.491234 AGATAGGCTGATAAGTTCGACG 57.509 45.455 0.00 0.00 0.00 5.12
77 78 4.135306 AGATAGGCTGATAAGTTCGACGA 58.865 43.478 0.00 0.00 0.00 4.20
78 79 2.853731 AGGCTGATAAGTTCGACGAG 57.146 50.000 0.00 0.00 0.00 4.18
79 80 2.366533 AGGCTGATAAGTTCGACGAGA 58.633 47.619 0.00 0.00 0.00 4.04
80 81 2.952978 AGGCTGATAAGTTCGACGAGAT 59.047 45.455 0.00 0.00 0.00 2.75
81 82 3.046390 GGCTGATAAGTTCGACGAGATG 58.954 50.000 0.00 0.00 0.00 2.90
82 83 3.243101 GGCTGATAAGTTCGACGAGATGA 60.243 47.826 0.00 0.00 0.00 2.92
83 84 4.352039 GCTGATAAGTTCGACGAGATGAA 58.648 43.478 0.00 0.00 0.00 2.57
84 85 4.798907 GCTGATAAGTTCGACGAGATGAAA 59.201 41.667 0.00 0.00 0.00 2.69
85 86 5.288712 GCTGATAAGTTCGACGAGATGAAAA 59.711 40.000 0.00 0.00 0.00 2.29
86 87 6.019479 GCTGATAAGTTCGACGAGATGAAAAT 60.019 38.462 0.00 0.00 0.00 1.82
87 88 7.451281 TGATAAGTTCGACGAGATGAAAATC 57.549 36.000 0.00 0.00 0.00 2.17
88 89 7.033185 TGATAAGTTCGACGAGATGAAAATCA 58.967 34.615 0.00 0.66 0.00 2.57
89 90 7.706607 TGATAAGTTCGACGAGATGAAAATCAT 59.293 33.333 0.00 0.00 40.34 2.45
102 103 5.856126 TGAAAATCATCAGTACAACCGTC 57.144 39.130 0.00 0.00 0.00 4.79
103 104 5.547465 TGAAAATCATCAGTACAACCGTCT 58.453 37.500 0.00 0.00 0.00 4.18
104 105 5.408299 TGAAAATCATCAGTACAACCGTCTG 59.592 40.000 0.00 0.00 0.00 3.51
105 106 4.801330 AATCATCAGTACAACCGTCTGA 57.199 40.909 0.00 0.00 41.43 3.27
106 107 4.801330 ATCATCAGTACAACCGTCTGAA 57.199 40.909 0.00 0.00 40.73 3.02
107 108 4.594123 TCATCAGTACAACCGTCTGAAA 57.406 40.909 0.00 0.00 40.73 2.69
108 109 4.304110 TCATCAGTACAACCGTCTGAAAC 58.696 43.478 0.00 0.00 40.73 2.78
109 110 3.102052 TCAGTACAACCGTCTGAAACC 57.898 47.619 0.00 0.00 35.65 3.27
110 111 1.790623 CAGTACAACCGTCTGAAACCG 59.209 52.381 0.00 0.00 0.00 4.44
111 112 1.410153 AGTACAACCGTCTGAAACCGT 59.590 47.619 0.00 0.00 0.00 4.83
112 113 1.788886 GTACAACCGTCTGAAACCGTC 59.211 52.381 0.00 0.00 0.00 4.79
113 114 0.176219 ACAACCGTCTGAAACCGTCA 59.824 50.000 0.00 0.00 34.17 4.35
114 115 1.292061 CAACCGTCTGAAACCGTCAA 58.708 50.000 0.00 0.00 35.22 3.18
115 116 1.871039 CAACCGTCTGAAACCGTCAAT 59.129 47.619 0.00 0.00 35.22 2.57
116 117 2.249844 ACCGTCTGAAACCGTCAATT 57.750 45.000 0.00 0.00 35.22 2.32
117 118 2.140717 ACCGTCTGAAACCGTCAATTC 58.859 47.619 0.00 0.00 35.22 2.17
118 119 2.139917 CCGTCTGAAACCGTCAATTCA 58.860 47.619 0.00 0.00 35.22 2.57
119 120 2.546368 CCGTCTGAAACCGTCAATTCAA 59.454 45.455 0.00 0.00 35.31 2.69
120 121 3.002862 CCGTCTGAAACCGTCAATTCAAA 59.997 43.478 0.00 0.00 35.31 2.69
121 122 4.320202 CCGTCTGAAACCGTCAATTCAAAT 60.320 41.667 0.00 0.00 35.31 2.32
122 123 5.106869 CCGTCTGAAACCGTCAATTCAAATA 60.107 40.000 0.00 0.00 35.31 1.40
123 124 6.015504 CGTCTGAAACCGTCAATTCAAATAG 58.984 40.000 0.00 0.00 35.31 1.73
124 125 6.314784 GTCTGAAACCGTCAATTCAAATAGG 58.685 40.000 0.00 0.00 35.31 2.57
125 126 5.414454 TCTGAAACCGTCAATTCAAATAGGG 59.586 40.000 0.00 0.00 35.31 3.53
126 127 5.074115 TGAAACCGTCAATTCAAATAGGGT 58.926 37.500 0.00 0.00 32.89 4.34
127 128 6.239396 TGAAACCGTCAATTCAAATAGGGTA 58.761 36.000 0.00 0.00 32.89 3.69
128 129 6.715718 TGAAACCGTCAATTCAAATAGGGTAA 59.284 34.615 0.00 0.00 32.89 2.85
129 130 6.505044 AACCGTCAATTCAAATAGGGTAAC 57.495 37.500 0.00 0.00 0.00 2.50
130 131 5.562635 ACCGTCAATTCAAATAGGGTAACA 58.437 37.500 0.00 0.00 39.74 2.41
131 132 6.005198 ACCGTCAATTCAAATAGGGTAACAA 58.995 36.000 0.00 0.00 39.74 2.83
132 133 6.490721 ACCGTCAATTCAAATAGGGTAACAAA 59.509 34.615 0.00 0.00 39.74 2.83
133 134 7.014422 ACCGTCAATTCAAATAGGGTAACAAAA 59.986 33.333 0.00 0.00 39.74 2.44
134 135 8.032451 CCGTCAATTCAAATAGGGTAACAAAAT 58.968 33.333 0.00 0.00 39.74 1.82
149 150 9.961265 GGGTAACAAAATAATATTCTGTTAGGC 57.039 33.333 11.04 2.94 34.17 3.93
150 151 9.659830 GGTAACAAAATAATATTCTGTTAGGCG 57.340 33.333 11.04 0.00 34.17 5.52
162 163 7.659652 ATTCTGTTAGGCGAAATAGAATAGC 57.340 36.000 18.76 0.00 42.21 2.97
163 164 6.651225 ATTCTGTTAGGCGAAATAGAATAGCC 59.349 38.462 18.76 0.00 42.21 3.93
169 170 4.798574 GGCGAAATAGAATAGCCCAAATG 58.201 43.478 0.00 0.00 41.81 2.32
170 171 4.278419 GGCGAAATAGAATAGCCCAAATGT 59.722 41.667 0.00 0.00 41.81 2.71
171 172 5.215160 GCGAAATAGAATAGCCCAAATGTG 58.785 41.667 0.00 0.00 0.00 3.21
172 173 5.221048 GCGAAATAGAATAGCCCAAATGTGT 60.221 40.000 0.00 0.00 0.00 3.72
173 174 6.201517 CGAAATAGAATAGCCCAAATGTGTG 58.798 40.000 0.00 0.00 0.00 3.82
174 175 6.183360 CGAAATAGAATAGCCCAAATGTGTGT 60.183 38.462 0.00 0.00 0.00 3.72
175 176 6.455360 AATAGAATAGCCCAAATGTGTGTG 57.545 37.500 0.00 0.00 0.00 3.82
176 177 3.766545 AGAATAGCCCAAATGTGTGTGT 58.233 40.909 0.00 0.00 0.00 3.72
177 178 3.507233 AGAATAGCCCAAATGTGTGTGTG 59.493 43.478 0.00 0.00 0.00 3.82
178 179 2.356665 TAGCCCAAATGTGTGTGTGT 57.643 45.000 0.00 0.00 0.00 3.72
179 180 0.746063 AGCCCAAATGTGTGTGTGTG 59.254 50.000 0.00 0.00 0.00 3.82
180 181 0.459489 GCCCAAATGTGTGTGTGTGT 59.541 50.000 0.00 0.00 0.00 3.72
181 182 1.802136 GCCCAAATGTGTGTGTGTGTG 60.802 52.381 0.00 0.00 0.00 3.82
221 222 4.497473 TGCAGGGAAATAACAGAAAACG 57.503 40.909 0.00 0.00 0.00 3.60
224 225 5.242838 TGCAGGGAAATAACAGAAAACGAAT 59.757 36.000 0.00 0.00 0.00 3.34
245 246 2.292828 AAACAGTGGCAATACAGGCT 57.707 45.000 0.00 0.00 34.73 4.58
251 252 2.162681 GTGGCAATACAGGCTCTTTGT 58.837 47.619 0.00 0.00 34.73 2.83
255 256 2.484264 GCAATACAGGCTCTTTGTCGTT 59.516 45.455 0.00 0.00 0.00 3.85
258 259 2.038387 ACAGGCTCTTTGTCGTTTGT 57.962 45.000 0.00 0.00 0.00 2.83
263 264 1.657538 GCTCTTTGTCGTTTGTCAGCG 60.658 52.381 0.00 0.00 0.00 5.18
287 288 2.612200 CAAAGACCTTTGCCGTCGA 58.388 52.632 9.25 0.00 42.66 4.20
314 315 2.112297 GGCAAAGGGGACACGTGA 59.888 61.111 25.01 0.00 0.00 4.35
317 318 1.098712 GCAAAGGGGACACGTGACAA 61.099 55.000 25.01 0.00 0.00 3.18
326 327 2.542597 GACACGTGACAACAACCTGTA 58.457 47.619 25.01 0.00 0.00 2.74
334 335 3.055021 TGACAACAACCTGTACAACCTGA 60.055 43.478 0.00 0.00 0.00 3.86
374 376 4.342951 CCATTTGGTCATTATGCCATCTGT 59.657 41.667 8.66 0.00 34.37 3.41
392 395 1.295792 GTTGGCAGACGACAAAGACA 58.704 50.000 0.00 0.00 43.47 3.41
400 403 3.123621 CAGACGACAAAGACATACAAGGC 59.876 47.826 0.00 0.00 0.00 4.35
428 431 4.503296 GGCAAAGTCTTAGAAGGAGTGACA 60.503 45.833 0.00 0.00 0.00 3.58
437 440 0.111061 AAGGAGTGACATGCAGGCAA 59.889 50.000 0.00 0.00 36.65 4.52
458 461 5.221106 GCAAAGCCATGCTAAAGTCATATGA 60.221 40.000 0.00 0.00 43.06 2.15
464 467 9.474054 AGCCATGCTAAAGTCATATGACAGACA 62.474 40.741 32.01 22.63 41.66 3.41
486 490 1.615392 CAAAGGGCTCTGGTTCTTTGG 59.385 52.381 0.00 0.00 41.11 3.28
493 497 0.468226 TCTGGTTCTTTGGCGTCAGT 59.532 50.000 0.00 0.00 0.00 3.41
494 498 1.134220 TCTGGTTCTTTGGCGTCAGTT 60.134 47.619 0.00 0.00 0.00 3.16
501 505 3.545124 TTGGCGTCAGTTGGCGGAT 62.545 57.895 8.30 0.00 44.35 4.18
566 570 4.540359 TTTTGCCATCCAAGATCTTTGG 57.460 40.909 17.12 17.12 40.87 3.28
572 576 2.559698 TCCAAGATCTTTGGCGTCAA 57.440 45.000 4.86 0.00 39.38 3.18
589 593 0.667993 CAACTTGGCCAAGAAAGCGA 59.332 50.000 44.50 11.10 40.79 4.93
609 616 0.591170 ACGACAAACTTTGCCATCCG 59.409 50.000 1.14 1.55 0.00 4.18
646 656 4.865776 ACAACAAACAATGTCATTACCGG 58.134 39.130 0.00 0.00 42.99 5.28
647 657 4.580995 ACAACAAACAATGTCATTACCGGA 59.419 37.500 9.46 0.00 42.99 5.14
648 658 5.153513 CAACAAACAATGTCATTACCGGAG 58.846 41.667 9.46 0.00 42.99 4.63
652 662 4.481368 ACAATGTCATTACCGGAGCTTA 57.519 40.909 9.46 0.00 0.00 3.09
653 663 4.839121 ACAATGTCATTACCGGAGCTTAA 58.161 39.130 9.46 0.00 0.00 1.85
654 664 5.437060 ACAATGTCATTACCGGAGCTTAAT 58.563 37.500 9.46 0.00 0.00 1.40
658 668 4.081365 TGTCATTACCGGAGCTTAATGTGA 60.081 41.667 9.46 0.76 37.11 3.58
663 673 2.439507 ACCGGAGCTTAATGTGATGGAT 59.560 45.455 9.46 0.00 0.00 3.41
664 674 3.117888 ACCGGAGCTTAATGTGATGGATT 60.118 43.478 9.46 0.00 0.00 3.01
707 717 1.838913 CAAAGTGGTTTGCCGTCTTG 58.161 50.000 0.00 0.00 36.86 3.02
708 718 1.134175 CAAAGTGGTTTGCCGTCTTGT 59.866 47.619 0.00 0.00 36.86 3.16
709 719 2.335316 AAGTGGTTTGCCGTCTTGTA 57.665 45.000 0.00 0.00 37.67 2.41
710 720 1.878953 AGTGGTTTGCCGTCTTGTAG 58.121 50.000 0.00 0.00 37.67 2.74
711 721 1.140252 AGTGGTTTGCCGTCTTGTAGT 59.860 47.619 0.00 0.00 37.67 2.73
712 722 1.263217 GTGGTTTGCCGTCTTGTAGTG 59.737 52.381 0.00 0.00 37.67 2.74
713 723 0.237498 GGTTTGCCGTCTTGTAGTGC 59.763 55.000 0.00 0.00 0.00 4.40
866 929 1.078637 CTTGCAGCCTGCTAGAGCA 60.079 57.895 21.31 6.13 46.54 4.26
886 949 3.366374 GCAAACGGAAGAAGAATGAAGGG 60.366 47.826 0.00 0.00 0.00 3.95
895 972 0.543749 AGAATGAAGGGGAAGCTCCG 59.456 55.000 0.00 0.00 37.43 4.63
950 1032 2.184579 CTTTCTCCCCGCCGTCTC 59.815 66.667 0.00 0.00 0.00 3.36
951 1033 3.372554 CTTTCTCCCCGCCGTCTCC 62.373 68.421 0.00 0.00 0.00 3.71
952 1034 3.899545 TTTCTCCCCGCCGTCTCCT 62.900 63.158 0.00 0.00 0.00 3.69
953 1035 4.816984 TCTCCCCGCCGTCTCCTC 62.817 72.222 0.00 0.00 0.00 3.71
1561 2029 6.502652 CAAATTTGGATATGTTGCGGATGTA 58.497 36.000 10.49 0.00 0.00 2.29
1718 2190 3.133003 ACGATGATGTAGCTACTTTGGCT 59.867 43.478 23.84 4.91 43.02 4.75
1724 2196 4.884668 TGTAGCTACTTTGGCTAACTGT 57.115 40.909 23.84 0.00 42.79 3.55
1816 2292 6.662755 AGGTATGTTTGCCATTCTTCTATCA 58.337 36.000 0.00 0.00 34.86 2.15
1871 2347 4.563140 TTTAGGAATAGTCACACCCACC 57.437 45.455 0.00 0.00 0.00 4.61
1881 2357 1.086696 CACACCCACCATAGCTTTCG 58.913 55.000 0.00 0.00 0.00 3.46
1882 2358 0.676782 ACACCCACCATAGCTTTCGC 60.677 55.000 0.00 0.00 0.00 4.70
1890 2366 1.732259 CCATAGCTTTCGCACTCGTTT 59.268 47.619 0.00 0.00 39.10 3.60
1908 2384 6.144402 ACTCGTTTCGTATTTTAACGTGATGT 59.856 34.615 13.32 4.52 43.58 3.06
1913 2389 9.796062 GTTTCGTATTTTAACGTGATGTTTCTA 57.204 29.630 0.00 0.00 43.31 2.10
1920 2396 4.882671 AACGTGATGTTTCTATCCATGC 57.117 40.909 0.00 0.00 37.59 4.06
1921 2397 3.206150 ACGTGATGTTTCTATCCATGCC 58.794 45.455 0.00 0.00 0.00 4.40
1922 2398 3.205338 CGTGATGTTTCTATCCATGCCA 58.795 45.455 0.00 0.00 0.00 4.92
1935 2411 3.634504 TCCATGCCAAGCTCAAACATAT 58.365 40.909 0.00 0.00 0.00 1.78
1965 2441 2.025605 ACCATCATCCACAGTTCATGCT 60.026 45.455 0.00 0.00 0.00 3.79
1967 2443 3.275999 CATCATCCACAGTTCATGCTCA 58.724 45.455 0.00 0.00 0.00 4.26
1978 2454 0.983467 TCATGCTCAGCCCACAACTA 59.017 50.000 0.00 0.00 0.00 2.24
1980 2456 0.035056 ATGCTCAGCCCACAACTACC 60.035 55.000 0.00 0.00 0.00 3.18
1981 2457 1.374947 GCTCAGCCCACAACTACCA 59.625 57.895 0.00 0.00 0.00 3.25
1983 2459 1.817740 GCTCAGCCCACAACTACCAAA 60.818 52.381 0.00 0.00 0.00 3.28
2001 2484 7.773690 ACTACCAAATTTGTCTTACAGTTCTGT 59.226 33.333 16.73 10.33 0.00 3.41
2003 2486 6.183360 ACCAAATTTGTCTTACAGTTCTGTGG 60.183 38.462 16.73 8.14 0.00 4.17
2004 2487 6.208644 CAAATTTGTCTTACAGTTCTGTGGG 58.791 40.000 14.69 7.84 0.00 4.61
2008 2491 2.047061 TCTTACAGTTCTGTGGGCAGT 58.953 47.619 14.69 0.00 43.05 4.40
2014 2497 1.597854 TTCTGTGGGCAGTGCTTCG 60.598 57.895 16.11 0.00 43.05 3.79
2023 2506 0.510359 GCAGTGCTTCGACTTCTGTG 59.490 55.000 8.18 0.00 0.00 3.66
2030 2513 1.795286 CTTCGACTTCTGTGCAGAACC 59.205 52.381 10.26 5.36 42.06 3.62
2033 2516 1.795286 CGACTTCTGTGCAGAACCTTC 59.205 52.381 10.26 6.87 42.06 3.46
2095 2580 5.643777 GTCAAATTGGCAAGTAGCTCTAGAA 59.356 40.000 5.96 0.00 44.79 2.10
2096 2581 5.643777 TCAAATTGGCAAGTAGCTCTAGAAC 59.356 40.000 5.96 0.00 44.79 3.01
2098 2583 4.891992 TTGGCAAGTAGCTCTAGAACTT 57.108 40.909 0.00 1.70 44.79 2.66
2109 2594 9.640952 AGTAGCTCTAGAACTTGATTAATCTCT 57.359 33.333 16.24 12.34 0.00 3.10
2110 2595 9.893305 GTAGCTCTAGAACTTGATTAATCTCTC 57.107 37.037 16.24 7.54 0.00 3.20
2111 2596 7.951591 AGCTCTAGAACTTGATTAATCTCTCC 58.048 38.462 16.24 2.92 0.00 3.71
2112 2597 6.861055 GCTCTAGAACTTGATTAATCTCTCCG 59.139 42.308 16.24 6.28 0.00 4.63
2113 2598 7.278461 TCTAGAACTTGATTAATCTCTCCGG 57.722 40.000 16.24 0.00 0.00 5.14
2114 2599 5.941555 AGAACTTGATTAATCTCTCCGGT 57.058 39.130 16.24 4.04 0.00 5.28
2115 2600 6.301169 AGAACTTGATTAATCTCTCCGGTT 57.699 37.500 16.24 10.92 0.00 4.44
2116 2601 6.109359 AGAACTTGATTAATCTCTCCGGTTG 58.891 40.000 16.24 0.00 0.00 3.77
2117 2602 4.770795 ACTTGATTAATCTCTCCGGTTGG 58.229 43.478 16.24 0.00 0.00 3.77
2118 2603 4.469945 ACTTGATTAATCTCTCCGGTTGGA 59.530 41.667 16.24 0.00 43.88 3.53
2119 2604 5.045869 ACTTGATTAATCTCTCCGGTTGGAA 60.046 40.000 16.24 0.00 45.87 3.53
2120 2605 5.023533 TGATTAATCTCTCCGGTTGGAAG 57.976 43.478 16.24 0.00 45.87 3.46
2121 2606 3.906720 TTAATCTCTCCGGTTGGAAGG 57.093 47.619 0.00 0.00 45.87 3.46
2122 2607 1.952621 AATCTCTCCGGTTGGAAGGA 58.047 50.000 0.00 0.00 45.87 3.36
2125 2610 3.068881 CTCCGGTTGGAAGGAGCA 58.931 61.111 0.00 0.00 46.23 4.26
2126 2611 1.374947 CTCCGGTTGGAAGGAGCAA 59.625 57.895 0.00 0.00 46.23 3.91
2127 2612 0.955919 CTCCGGTTGGAAGGAGCAAC 60.956 60.000 0.00 0.00 46.23 4.17
2128 2613 1.073199 CCGGTTGGAAGGAGCAACT 59.927 57.895 0.00 0.00 37.49 3.16
2129 2614 0.537371 CCGGTTGGAAGGAGCAACTT 60.537 55.000 0.00 0.00 37.49 2.66
2130 2615 0.593128 CGGTTGGAAGGAGCAACTTG 59.407 55.000 0.00 0.00 0.00 3.16
2131 2616 0.961753 GGTTGGAAGGAGCAACTTGG 59.038 55.000 0.00 0.00 0.00 3.61
2132 2617 1.692411 GTTGGAAGGAGCAACTTGGT 58.308 50.000 0.00 0.00 0.00 3.67
2133 2618 2.031870 GTTGGAAGGAGCAACTTGGTT 58.968 47.619 0.00 0.00 0.00 3.67
2134 2619 1.691196 TGGAAGGAGCAACTTGGTTG 58.309 50.000 6.10 6.10 45.24 3.77
2135 2620 1.064017 TGGAAGGAGCAACTTGGTTGT 60.064 47.619 11.27 0.21 44.40 3.32
2136 2621 2.031870 GGAAGGAGCAACTTGGTTGTT 58.968 47.619 11.27 5.95 44.40 2.83
2185 2670 6.636454 TCTAGACTGTTGGGTTGGAAATAT 57.364 37.500 0.00 0.00 0.00 1.28
2253 2738 8.242053 CACTGAATAATATCCAAGGATGATTGC 58.758 37.037 11.82 4.67 36.17 3.56
2302 2787 7.325097 GCACAAGTTTGTACATTATGTGGTTAC 59.675 37.037 22.29 0.00 39.91 2.50
2355 2840 0.592637 TTGCACATCAGAAACTGCCG 59.407 50.000 0.00 0.00 0.00 5.69
2442 2927 4.439253 AGTGGCCCTTATAAACTGATCC 57.561 45.455 0.00 0.00 0.00 3.36
2473 2958 3.754850 TGAAATGCAGGATCTTGAGTGTG 59.245 43.478 9.36 0.00 0.00 3.82
2506 2991 8.699130 ACTCTGACAGTGATGATGATAATGTTA 58.301 33.333 11.37 0.00 32.26 2.41
2610 3095 7.168972 GCAGAGTGTATTGTACAAGATGATCTC 59.831 40.741 14.65 14.60 40.93 2.75
2634 3119 2.778659 GAACAGAACAATGAGATGCGC 58.221 47.619 0.00 0.00 0.00 6.09
2754 3239 2.430546 TATTGCTTGGTTTGGTTGCG 57.569 45.000 0.00 0.00 0.00 4.85
2780 3266 5.577164 GTCTGTAGTTATGTCATGTGTGGAC 59.423 44.000 0.00 0.00 35.83 4.02
2793 3279 1.000506 GTGTGGACACGCCTCTCTTAA 59.999 52.381 4.72 0.00 37.10 1.85
2797 3283 3.751698 GTGGACACGCCTCTCTTAAAATT 59.248 43.478 0.00 0.00 37.63 1.82
2849 3388 2.293122 CCCTCGAAGCAAACATGAAACA 59.707 45.455 0.00 0.00 0.00 2.83
3169 3710 9.146984 CATCCTTTTTACAATGTACTTCTCGTA 57.853 33.333 0.00 0.00 0.00 3.43
3276 3817 1.338890 TTCTGTGGACAACGGGGTCA 61.339 55.000 10.32 0.00 39.59 4.02
3509 4050 6.959639 TTTGTTCTTTCTAAGGCAGACAAT 57.040 33.333 0.00 0.00 31.12 2.71
3885 4426 4.443621 GACTACTGGCCTTTCTGGTATTC 58.556 47.826 3.32 0.00 38.35 1.75
3958 4511 8.767478 TTGTACGACTTCTTCTTTAATAAGGG 57.233 34.615 0.00 0.00 32.02 3.95
3979 4532 4.827284 GGGAGAATGTGAACAAGAGGAAAA 59.173 41.667 0.00 0.00 0.00 2.29
4029 4583 8.514594 CCATATTCTGTGAACACTGTATTTGTT 58.485 33.333 6.51 0.00 39.94 2.83
4054 4629 5.066593 GGAATCGATCTGCCTTCCTTATTT 58.933 41.667 0.00 0.00 35.36 1.40
4079 4654 6.417191 TTTGAACCTGTCGTATATTTCTGC 57.583 37.500 0.00 0.00 0.00 4.26
4384 4964 7.646548 ACTGTATGTACTCTGCAGATCTTAA 57.353 36.000 18.63 2.73 0.00 1.85
4451 5031 5.577164 CGTTTCTTATGATTCGAGAAGTGGT 59.423 40.000 0.00 0.00 31.67 4.16
4495 5075 7.803659 GTCTGGATTTCTGCTTAACTAAAACAC 59.196 37.037 0.00 0.00 0.00 3.32
4512 5092 9.243105 ACTAAAACACATAATGCATACCTTTCT 57.757 29.630 0.00 0.00 0.00 2.52
4635 5215 3.153919 GGCAGTAATTTCTGTGGGACAA 58.846 45.455 12.93 0.00 44.16 3.18
4749 5329 3.066342 CGAGTGTTCCTACCGTATCATGT 59.934 47.826 0.00 0.00 0.00 3.21
4784 5366 2.363683 GACCTGCTTGGATTTGGAGAG 58.636 52.381 3.40 0.00 39.71 3.20
4785 5367 1.988107 ACCTGCTTGGATTTGGAGAGA 59.012 47.619 3.40 0.00 39.71 3.10
4880 5462 7.562135 TCGTTTAAATAGACTGGCCTTCTTAT 58.438 34.615 12.12 0.00 0.00 1.73
4978 5560 7.156000 TGTTTGATTCCTTATCGTACAGTGAA 58.844 34.615 0.00 0.00 35.94 3.18
4980 5562 8.665685 GTTTGATTCCTTATCGTACAGTGAATT 58.334 33.333 0.00 0.00 35.94 2.17
4981 5563 7.770801 TGATTCCTTATCGTACAGTGAATTG 57.229 36.000 0.00 0.00 35.94 2.32
4982 5564 7.327975 TGATTCCTTATCGTACAGTGAATTGT 58.672 34.615 0.00 0.00 35.94 2.71
4983 5565 7.822334 TGATTCCTTATCGTACAGTGAATTGTT 59.178 33.333 0.00 0.00 35.94 2.83
4984 5566 9.309516 GATTCCTTATCGTACAGTGAATTGTTA 57.690 33.333 0.00 0.00 32.56 2.41
4985 5567 9.661563 ATTCCTTATCGTACAGTGAATTGTTAA 57.338 29.630 0.00 0.00 32.56 2.01
4986 5568 9.661563 TTCCTTATCGTACAGTGAATTGTTAAT 57.338 29.630 0.00 0.00 32.56 1.40
4987 5569 9.661563 TCCTTATCGTACAGTGAATTGTTAATT 57.338 29.630 0.00 0.00 32.56 1.40
4988 5570 9.916397 CCTTATCGTACAGTGAATTGTTAATTC 57.084 33.333 0.00 7.21 45.86 2.17
4989 5571 9.916397 CTTATCGTACAGTGAATTGTTAATTCC 57.084 33.333 10.72 4.14 45.23 3.01
4990 5572 9.661563 TTATCGTACAGTGAATTGTTAATTCCT 57.338 29.630 10.72 5.91 45.23 3.36
4992 5574 9.832445 ATCGTACAGTGAATTGTTAATTCCTAT 57.168 29.630 10.72 2.03 45.23 2.57
4993 5575 9.093970 TCGTACAGTGAATTGTTAATTCCTATG 57.906 33.333 10.72 9.17 45.23 2.23
4994 5576 8.879759 CGTACAGTGAATTGTTAATTCCTATGT 58.120 33.333 10.72 13.04 45.23 2.29
5004 5586 8.973835 TTGTTAATTCCTATGTTTTTAAGGCG 57.026 30.769 0.00 0.00 0.00 5.52
5005 5587 8.113173 TGTTAATTCCTATGTTTTTAAGGCGT 57.887 30.769 0.00 0.00 0.00 5.68
5006 5588 8.238631 TGTTAATTCCTATGTTTTTAAGGCGTC 58.761 33.333 0.00 0.00 0.00 5.19
5007 5589 5.830000 ATTCCTATGTTTTTAAGGCGTCC 57.170 39.130 0.00 0.00 0.00 4.79
5008 5590 3.264104 TCCTATGTTTTTAAGGCGTCCG 58.736 45.455 0.00 0.00 0.00 4.79
5009 5591 3.004862 CCTATGTTTTTAAGGCGTCCGT 58.995 45.455 0.00 0.00 0.00 4.69
5010 5592 4.081752 TCCTATGTTTTTAAGGCGTCCGTA 60.082 41.667 0.00 0.00 0.00 4.02
5011 5593 4.630940 CCTATGTTTTTAAGGCGTCCGTAA 59.369 41.667 0.00 0.00 0.00 3.18
5012 5594 4.673534 ATGTTTTTAAGGCGTCCGTAAG 57.326 40.909 4.97 0.00 30.10 2.34
5251 5833 3.196007 CGAAGCATCGCCTTAAAAACA 57.804 42.857 0.00 0.00 42.96 2.83
5252 5834 3.758300 CGAAGCATCGCCTTAAAAACAT 58.242 40.909 0.00 0.00 42.96 2.71
5253 5835 4.904116 CGAAGCATCGCCTTAAAAACATA 58.096 39.130 0.00 0.00 42.96 2.29
5308 5890 8.532977 AATTTGTTATTGCCATAACTTGACAC 57.467 30.769 18.45 0.00 43.73 3.67
5362 5944 3.883669 TGACCAACATATACATGCTGCA 58.116 40.909 4.13 4.13 35.39 4.41
5423 6011 4.036734 TCACACATCCAAAAGAAAGCAGAC 59.963 41.667 0.00 0.00 0.00 3.51
5480 6068 6.478673 CCTTGTGGTGGTTTTTATTTGTTCTC 59.521 38.462 0.00 0.00 0.00 2.87
5634 6222 5.376625 TGCCACAACCTCCATCTATTATTC 58.623 41.667 0.00 0.00 0.00 1.75
5661 6249 6.001449 TCAGTTGTTCAGATAATAAGGGGG 57.999 41.667 0.00 0.00 0.00 5.40
5694 6282 0.467804 TGCCAGGCATGCGATACTTA 59.532 50.000 11.22 0.00 31.71 2.24
5718 6306 1.224069 TGAGACTGAAGCTTGCGCAC 61.224 55.000 11.12 0.00 39.10 5.34
5781 6369 4.881273 CCAGTTCCATCGTTGATATTTGGA 59.119 41.667 0.00 0.00 34.74 3.53
5870 6458 3.350219 ACTGAAGGTACGCCATTTCAT 57.650 42.857 0.00 0.00 37.19 2.57
5881 6469 3.065786 ACGCCATTTCATGTATTGCTCAG 59.934 43.478 0.00 0.00 0.00 3.35
5883 6471 4.439153 CGCCATTTCATGTATTGCTCAGTT 60.439 41.667 0.00 0.00 0.00 3.16
5884 6472 5.220835 CGCCATTTCATGTATTGCTCAGTTA 60.221 40.000 0.00 0.00 0.00 2.24
5885 6473 6.513884 CGCCATTTCATGTATTGCTCAGTTAT 60.514 38.462 0.00 0.00 0.00 1.89
5886 6474 7.307930 CGCCATTTCATGTATTGCTCAGTTATA 60.308 37.037 0.00 0.00 0.00 0.98
5887 6475 8.352201 GCCATTTCATGTATTGCTCAGTTATAA 58.648 33.333 0.00 0.00 0.00 0.98
5888 6476 9.669353 CCATTTCATGTATTGCTCAGTTATAAC 57.331 33.333 7.57 7.57 0.00 1.89
5921 6509 6.757897 TTTGTGTTCTTTCATGTCTGTCTT 57.242 33.333 0.00 0.00 0.00 3.01
5922 6510 5.739752 TGTGTTCTTTCATGTCTGTCTTG 57.260 39.130 0.00 0.00 0.00 3.02
5923 6511 4.576053 TGTGTTCTTTCATGTCTGTCTTGG 59.424 41.667 0.00 0.00 0.00 3.61
5929 6517 4.897509 TTCATGTCTGTCTTGGAGTCAT 57.102 40.909 0.00 0.00 0.00 3.06
5936 6524 5.471116 TGTCTGTCTTGGAGTCATGAAAATG 59.529 40.000 0.00 0.00 0.00 2.32
5937 6525 5.471456 GTCTGTCTTGGAGTCATGAAAATGT 59.529 40.000 0.00 0.00 0.00 2.71
5938 6526 5.702670 TCTGTCTTGGAGTCATGAAAATGTC 59.297 40.000 0.00 0.00 0.00 3.06
5939 6527 5.375773 TGTCTTGGAGTCATGAAAATGTCA 58.624 37.500 0.00 0.00 41.67 3.58
5942 6530 7.014518 TGTCTTGGAGTCATGAAAATGTCAATT 59.985 33.333 0.00 0.00 40.50 2.32
5944 6532 9.246670 TCTTGGAGTCATGAAAATGTCAATTAT 57.753 29.630 0.00 0.00 40.50 1.28
5958 6546 9.816354 AAATGTCAATTATTATTGTACCAAGCC 57.184 29.630 4.48 0.00 41.54 4.35
5980 6568 8.404107 AGCCTCTGAGAAGTATATAACTCTTC 57.596 38.462 6.17 8.20 37.50 2.87
5983 6571 7.662258 CCTCTGAGAAGTATATAACTCTTCGGA 59.338 40.741 6.17 9.01 41.36 4.55
6025 6882 9.736023 ACTAAATGCTCACTAAAAGAAAACAAG 57.264 29.630 0.00 0.00 0.00 3.16
6094 6960 8.729805 TGTTTTTGTAAGGATTGCTCATTTTT 57.270 26.923 0.00 0.00 0.00 1.94
6197 7063 9.476928 AGTATTACTACCTCTGTAGACAAATGT 57.523 33.333 6.73 0.00 46.18 2.71
6201 7067 9.524496 TTACTACCTCTGTAGACAAATGTAAGA 57.476 33.333 6.73 0.00 46.18 2.10
6202 7068 8.596781 ACTACCTCTGTAGACAAATGTAAGAT 57.403 34.615 6.73 0.00 46.18 2.40
6203 7069 8.470805 ACTACCTCTGTAGACAAATGTAAGATG 58.529 37.037 6.73 0.00 46.18 2.90
6204 7070 7.246171 ACCTCTGTAGACAAATGTAAGATGT 57.754 36.000 0.00 0.00 0.00 3.06
6205 7071 7.680730 ACCTCTGTAGACAAATGTAAGATGTT 58.319 34.615 0.00 0.00 0.00 2.71
6206 7072 8.157476 ACCTCTGTAGACAAATGTAAGATGTTT 58.843 33.333 0.00 0.00 0.00 2.83
6207 7073 9.003658 CCTCTGTAGACAAATGTAAGATGTTTT 57.996 33.333 0.00 0.00 0.00 2.43
6211 7077 9.787435 TGTAGACAAATGTAAGATGTTTTAGGT 57.213 29.630 0.00 0.00 0.00 3.08
6213 7079 8.918202 AGACAAATGTAAGATGTTTTAGGTCA 57.082 30.769 0.00 0.00 0.00 4.02
6214 7080 8.784043 AGACAAATGTAAGATGTTTTAGGTCAC 58.216 33.333 0.00 0.00 0.00 3.67
6215 7081 8.691661 ACAAATGTAAGATGTTTTAGGTCACT 57.308 30.769 0.00 0.00 0.00 3.41
6216 7082 9.787435 ACAAATGTAAGATGTTTTAGGTCACTA 57.213 29.630 0.00 0.00 0.00 2.74
6249 7117 0.310854 GTGGCTCCTGTTTGGTTTCG 59.689 55.000 0.00 0.00 37.07 3.46
6257 7125 3.640029 TCCTGTTTGGTTTCGTCTCTAGT 59.360 43.478 0.00 0.00 37.07 2.57
6343 7211 9.923143 ATAGTTTAAATTAACCCTGTTTTCTGC 57.077 29.630 0.00 0.00 0.00 4.26
6639 7507 5.585445 AGATCAATTCAGCATTGTCACTCTC 59.415 40.000 0.00 0.00 42.79 3.20
6643 7511 3.049708 TCAGCATTGTCACTCTCCAAG 57.950 47.619 0.00 0.00 0.00 3.61
6664 7534 6.381801 CAAGGAGGCTTTTACAGTGTAATTG 58.618 40.000 16.26 10.96 0.00 2.32
6678 7548 6.310224 ACAGTGTAATTGTTGCAAGTTTTGAC 59.690 34.615 0.00 0.00 29.90 3.18
6698 7568 1.739466 CCATGATTGGTGAACGTCTGG 59.261 52.381 0.00 0.00 38.30 3.86
6700 7570 0.605319 TGATTGGTGAACGTCTGGCC 60.605 55.000 0.00 0.00 0.00 5.36
6702 7572 2.391724 ATTGGTGAACGTCTGGCCGT 62.392 55.000 0.00 0.00 44.23 5.68
6797 7669 2.335316 TACCTTGCAGTGTTCCGTTT 57.665 45.000 0.00 0.00 0.00 3.60
6798 7670 0.738389 ACCTTGCAGTGTTCCGTTTG 59.262 50.000 0.00 0.00 0.00 2.93
6799 7671 1.021202 CCTTGCAGTGTTCCGTTTGA 58.979 50.000 0.00 0.00 0.00 2.69
6800 7672 1.608590 CCTTGCAGTGTTCCGTTTGAT 59.391 47.619 0.00 0.00 0.00 2.57
6801 7673 2.811431 CCTTGCAGTGTTCCGTTTGATA 59.189 45.455 0.00 0.00 0.00 2.15
6802 7674 3.440173 CCTTGCAGTGTTCCGTTTGATAT 59.560 43.478 0.00 0.00 0.00 1.63
6803 7675 4.406069 CTTGCAGTGTTCCGTTTGATATG 58.594 43.478 0.00 0.00 0.00 1.78
7118 8015 0.882484 TTTGATGAACAGCGCCGTCA 60.882 50.000 2.29 5.65 0.00 4.35
7167 8071 6.515696 GCTTCTAATATCTGGAACATTTGGCC 60.516 42.308 0.00 0.00 38.20 5.36
7243 8147 4.851639 AGTTGTTGATTGGCTAGAGGAT 57.148 40.909 0.00 0.00 0.00 3.24
7259 8163 3.960755 AGAGGATTATCACATGGACGACA 59.039 43.478 0.00 0.00 0.00 4.35
7277 8186 3.394719 GACAAACTGAGGAACTGACTCC 58.605 50.000 0.00 0.00 41.55 3.85
7286 8195 2.040813 AGGAACTGACTCCAATGTGCAT 59.959 45.455 0.00 0.00 37.18 3.96
7351 8262 1.684450 TGTTTGTCGGTGTAGCTCTCA 59.316 47.619 0.00 0.00 0.00 3.27
7375 8286 5.086888 GTTTGTCGAAACTTGTACCGATT 57.913 39.130 0.00 0.00 38.78 3.34
7388 8299 4.439057 TGTACCGATTGAGTAGATTTGGC 58.561 43.478 0.00 0.00 0.00 4.52
7398 8309 2.930040 AGTAGATTTGGCGTGTGAATCG 59.070 45.455 0.00 0.00 35.49 3.34
7404 8315 0.249120 TGGCGTGTGAATCGAAGGAT 59.751 50.000 0.00 0.00 0.00 3.24
7411 8322 4.862574 CGTGTGAATCGAAGGATCTTTGTA 59.137 41.667 0.00 0.00 30.81 2.41
7453 8364 8.893727 AGCTGTTTGTTATGAGTATATTGTTCC 58.106 33.333 0.00 0.00 0.00 3.62
7468 8379 9.669353 GTATATTGTTCCAGCTCATTTATGTTG 57.331 33.333 0.00 0.00 0.00 3.33
7524 8445 9.726438 CCTTGTCTAAATATACTATTCTTGGGG 57.274 37.037 0.00 0.00 0.00 4.96
7542 8477 3.454812 TGGGGAATCTTAACTAGCAGACC 59.545 47.826 0.00 0.00 0.00 3.85
7590 8525 6.328934 TGAACTACCTATCAGCCATTGGATTA 59.671 38.462 6.95 0.00 32.05 1.75
7620 8555 2.163211 GGATCTCAAAGCAGTCAAAGGC 59.837 50.000 0.00 0.00 0.00 4.35
7666 8601 0.814010 GCTGGGAACGTGTGAACTGT 60.814 55.000 0.00 0.00 0.00 3.55
7715 8650 2.679342 CCCTCCTCCCCATTTCGCA 61.679 63.158 0.00 0.00 0.00 5.10
7721 8656 2.124320 CCCCATTTCGCATCCCGT 60.124 61.111 0.00 0.00 38.35 5.28
7722 8657 2.186826 CCCCATTTCGCATCCCGTC 61.187 63.158 0.00 0.00 38.35 4.79
7723 8658 1.451207 CCCATTTCGCATCCCGTCA 60.451 57.895 0.00 0.00 38.35 4.35
7724 8659 1.714899 CCCATTTCGCATCCCGTCAC 61.715 60.000 0.00 0.00 38.35 3.67
7725 8660 1.714899 CCATTTCGCATCCCGTCACC 61.715 60.000 0.00 0.00 38.35 4.02
7726 8661 1.451387 ATTTCGCATCCCGTCACCC 60.451 57.895 0.00 0.00 38.35 4.61
7737 8672 3.371063 GTCACCCGCGGAGTGAGA 61.371 66.667 34.89 20.77 44.57 3.27
7738 8673 3.062466 TCACCCGCGGAGTGAGAG 61.062 66.667 32.34 17.18 43.07 3.20
7739 8674 3.062466 CACCCGCGGAGTGAGAGA 61.062 66.667 31.05 0.00 43.07 3.10
7740 8675 2.752238 ACCCGCGGAGTGAGAGAG 60.752 66.667 30.73 8.96 43.07 3.20
7741 8676 3.522731 CCCGCGGAGTGAGAGAGG 61.523 72.222 30.73 0.44 43.07 3.69
7742 8677 3.522731 CCGCGGAGTGAGAGAGGG 61.523 72.222 24.07 0.00 43.07 4.30
7748 8683 1.314730 GGAGTGAGAGAGGGATCGAC 58.685 60.000 0.00 0.00 0.00 4.20
7749 8684 1.408961 GGAGTGAGAGAGGGATCGACA 60.409 57.143 0.00 0.00 0.00 4.35
7751 8686 2.096248 AGTGAGAGAGGGATCGACAAC 58.904 52.381 0.00 0.00 0.00 3.32
7753 8688 1.272480 TGAGAGAGGGATCGACAACCA 60.272 52.381 4.88 0.00 0.00 3.67
7754 8689 2.035632 GAGAGAGGGATCGACAACCAT 58.964 52.381 4.88 0.00 0.00 3.55
7755 8690 1.759445 AGAGAGGGATCGACAACCATG 59.241 52.381 4.88 0.00 0.00 3.66
7758 8693 0.833287 AGGGATCGACAACCATGAGG 59.167 55.000 0.00 0.00 42.21 3.86
7759 8694 0.815615 GGGATCGACAACCATGAGGC 60.816 60.000 0.00 0.00 39.06 4.70
7761 8696 0.179111 GATCGACAACCATGAGGCGA 60.179 55.000 12.01 12.01 39.06 5.54
7763 8698 2.100631 CGACAACCATGAGGCGACC 61.101 63.158 0.00 0.00 39.06 4.79
7766 8701 1.003355 CAACCATGAGGCGACCTGT 60.003 57.895 2.98 0.00 39.06 4.00
7767 8702 1.003355 AACCATGAGGCGACCTGTG 60.003 57.895 2.98 2.85 39.06 3.66
7769 8704 1.448540 CCATGAGGCGACCTGTGAC 60.449 63.158 2.98 0.00 31.76 3.67
7771 8706 3.006756 ATGAGGCGACCTGTGACGG 62.007 63.158 2.98 0.00 31.76 4.79
7772 8707 4.436998 GAGGCGACCTGTGACGGG 62.437 72.222 9.35 9.35 31.76 5.28
7773 8708 4.988716 AGGCGACCTGTGACGGGA 62.989 66.667 19.07 0.00 33.36 5.14
7775 8710 2.737376 GCGACCTGTGACGGGAAC 60.737 66.667 19.07 9.67 33.36 3.62
7809 9086 3.353029 CGTGGCGTGGTTGCATCA 61.353 61.111 0.00 0.00 36.28 3.07
7828 9189 4.347360 TCATCCCATGTAGCATCTTCTG 57.653 45.455 0.00 0.00 0.00 3.02
7880 9241 4.331968 TGAACAACCGGCAGATTATTTCT 58.668 39.130 0.00 0.00 33.90 2.52
7881 9242 4.764823 TGAACAACCGGCAGATTATTTCTT 59.235 37.500 0.00 0.00 29.93 2.52
7882 9243 4.701956 ACAACCGGCAGATTATTTCTTG 57.298 40.909 0.00 0.00 29.93 3.02
7883 9244 3.443681 ACAACCGGCAGATTATTTCTTGG 59.556 43.478 0.00 0.00 29.93 3.61
7884 9245 3.366052 ACCGGCAGATTATTTCTTGGT 57.634 42.857 0.00 0.00 29.93 3.67
7885 9246 4.497291 ACCGGCAGATTATTTCTTGGTA 57.503 40.909 0.00 0.00 32.67 3.25
7886 9247 4.196971 ACCGGCAGATTATTTCTTGGTAC 58.803 43.478 0.00 0.00 32.67 3.34
7887 9248 3.564225 CCGGCAGATTATTTCTTGGTACC 59.436 47.826 4.43 4.43 29.93 3.34
7888 9249 3.564225 CGGCAGATTATTTCTTGGTACCC 59.436 47.826 10.07 0.00 29.93 3.69
7889 9250 3.564225 GGCAGATTATTTCTTGGTACCCG 59.436 47.826 10.07 0.09 29.93 5.28
7890 9251 3.003378 GCAGATTATTTCTTGGTACCCGC 59.997 47.826 10.07 0.00 29.93 6.13
7906 9267 1.674057 CGCCTGACTTGGAGAACCT 59.326 57.895 0.00 0.00 37.04 3.50
7908 9269 0.390472 GCCTGACTTGGAGAACCTCG 60.390 60.000 0.00 0.00 37.04 4.63
7952 9323 3.393687 TCACCATTGGTAGATTAGGGCT 58.606 45.455 8.31 0.00 32.11 5.19
7959 9330 5.825593 TTGGTAGATTAGGGCTAGGAATG 57.174 43.478 0.00 0.00 0.00 2.67
7960 9331 4.168101 TGGTAGATTAGGGCTAGGAATGG 58.832 47.826 0.00 0.00 0.00 3.16
7961 9332 4.140543 TGGTAGATTAGGGCTAGGAATGGA 60.141 45.833 0.00 0.00 0.00 3.41
7962 9333 5.033522 GGTAGATTAGGGCTAGGAATGGAT 58.966 45.833 0.00 0.00 0.00 3.41
7963 9334 5.489278 GGTAGATTAGGGCTAGGAATGGATT 59.511 44.000 0.00 0.00 0.00 3.01
7964 9335 6.012421 GGTAGATTAGGGCTAGGAATGGATTT 60.012 42.308 0.00 0.00 0.00 2.17
7965 9336 7.182206 GGTAGATTAGGGCTAGGAATGGATTTA 59.818 40.741 0.00 0.00 0.00 1.40
7966 9337 7.837359 AGATTAGGGCTAGGAATGGATTTAT 57.163 36.000 0.00 0.00 0.00 1.40
7967 9338 7.637511 AGATTAGGGCTAGGAATGGATTTATG 58.362 38.462 0.00 0.00 0.00 1.90
7968 9339 4.664688 AGGGCTAGGAATGGATTTATGG 57.335 45.455 0.00 0.00 0.00 2.74
7969 9340 3.092301 GGGCTAGGAATGGATTTATGGC 58.908 50.000 0.00 0.00 0.00 4.40
7997 9368 0.674581 TTCTTCAGCTGGCCGACATG 60.675 55.000 15.13 0.00 0.00 3.21
8018 9389 6.983890 ACATGAAAAACAGGGTGTATTTTCAC 59.016 34.615 20.12 0.00 42.54 3.18
8019 9390 6.531503 TGAAAAACAGGGTGTATTTTCACA 57.468 33.333 17.01 5.93 39.45 3.58
8068 9439 0.177604 CTTGCCCACCTTTTGCACAA 59.822 50.000 0.00 0.00 34.16 3.33
8069 9440 0.835941 TTGCCCACCTTTTGCACAAT 59.164 45.000 0.00 0.00 34.16 2.71
8072 9443 1.606224 GCCCACCTTTTGCACAATCAG 60.606 52.381 0.00 0.00 0.00 2.90
8129 9500 1.005215 CCCTCTGAATCCAAAGGCTGT 59.995 52.381 0.00 0.00 0.00 4.40
8183 9560 6.443849 ACCATATCTCCCACTTCAAAAGACTA 59.556 38.462 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.322491 TCAGAATGAGGCGTGTAATATATCG 58.678 40.000 0.00 0.00 42.56 2.92
45 46 9.959721 AACTTATCAGCCTATCTAGTTCAAAAA 57.040 29.630 0.00 0.00 0.00 1.94
46 47 9.601217 GAACTTATCAGCCTATCTAGTTCAAAA 57.399 33.333 0.00 0.00 39.63 2.44
47 48 7.921214 CGAACTTATCAGCCTATCTAGTTCAAA 59.079 37.037 0.00 0.00 39.75 2.69
48 49 7.284716 TCGAACTTATCAGCCTATCTAGTTCAA 59.715 37.037 0.00 0.00 39.75 2.69
49 50 6.771267 TCGAACTTATCAGCCTATCTAGTTCA 59.229 38.462 0.00 0.00 39.75 3.18
50 51 7.079475 GTCGAACTTATCAGCCTATCTAGTTC 58.921 42.308 0.00 0.00 37.64 3.01
51 52 6.293516 CGTCGAACTTATCAGCCTATCTAGTT 60.294 42.308 0.00 0.00 0.00 2.24
52 53 5.179742 CGTCGAACTTATCAGCCTATCTAGT 59.820 44.000 0.00 0.00 0.00 2.57
53 54 5.408909 TCGTCGAACTTATCAGCCTATCTAG 59.591 44.000 0.00 0.00 0.00 2.43
54 55 5.303165 TCGTCGAACTTATCAGCCTATCTA 58.697 41.667 0.00 0.00 0.00 1.98
55 56 4.135306 TCGTCGAACTTATCAGCCTATCT 58.865 43.478 0.00 0.00 0.00 1.98
56 57 4.213694 TCTCGTCGAACTTATCAGCCTATC 59.786 45.833 0.00 0.00 0.00 2.08
57 58 4.135306 TCTCGTCGAACTTATCAGCCTAT 58.865 43.478 0.00 0.00 0.00 2.57
58 59 3.538591 TCTCGTCGAACTTATCAGCCTA 58.461 45.455 0.00 0.00 0.00 3.93
59 60 2.366533 TCTCGTCGAACTTATCAGCCT 58.633 47.619 0.00 0.00 0.00 4.58
60 61 2.846039 TCTCGTCGAACTTATCAGCC 57.154 50.000 0.00 0.00 0.00 4.85
61 62 3.953766 TCATCTCGTCGAACTTATCAGC 58.046 45.455 0.00 0.00 0.00 4.26
62 63 6.871044 TTTTCATCTCGTCGAACTTATCAG 57.129 37.500 0.00 0.00 0.00 2.90
63 64 7.033185 TGATTTTCATCTCGTCGAACTTATCA 58.967 34.615 0.00 0.00 0.00 2.15
64 65 7.451281 TGATTTTCATCTCGTCGAACTTATC 57.549 36.000 0.00 0.00 0.00 1.75
79 80 6.092670 CAGACGGTTGTACTGATGATTTTCAT 59.907 38.462 0.00 0.00 40.34 2.57
80 81 5.408299 CAGACGGTTGTACTGATGATTTTCA 59.592 40.000 0.00 0.00 34.07 2.69
81 82 5.637810 TCAGACGGTTGTACTGATGATTTTC 59.362 40.000 0.00 0.00 36.04 2.29
82 83 5.547465 TCAGACGGTTGTACTGATGATTTT 58.453 37.500 0.00 0.00 36.04 1.82
83 84 5.147330 TCAGACGGTTGTACTGATGATTT 57.853 39.130 0.00 0.00 36.04 2.17
84 85 4.801330 TCAGACGGTTGTACTGATGATT 57.199 40.909 0.00 0.00 36.04 2.57
85 86 4.801330 TTCAGACGGTTGTACTGATGAT 57.199 40.909 0.00 0.00 39.78 2.45
86 87 4.304110 GTTTCAGACGGTTGTACTGATGA 58.696 43.478 0.00 0.00 39.78 2.92
87 88 3.432252 GGTTTCAGACGGTTGTACTGATG 59.568 47.826 0.00 0.00 39.78 3.07
88 89 3.660865 GGTTTCAGACGGTTGTACTGAT 58.339 45.455 0.00 0.00 39.78 2.90
89 90 2.544277 CGGTTTCAGACGGTTGTACTGA 60.544 50.000 0.00 0.00 38.61 3.41
90 91 1.790623 CGGTTTCAGACGGTTGTACTG 59.209 52.381 0.00 0.00 0.00 2.74
91 92 1.410153 ACGGTTTCAGACGGTTGTACT 59.590 47.619 0.00 0.00 38.51 2.73
92 93 1.788886 GACGGTTTCAGACGGTTGTAC 59.211 52.381 0.00 0.00 41.32 2.90
93 94 1.408340 TGACGGTTTCAGACGGTTGTA 59.592 47.619 0.00 0.00 41.32 2.41
94 95 0.176219 TGACGGTTTCAGACGGTTGT 59.824 50.000 0.00 0.00 41.32 3.32
95 96 1.292061 TTGACGGTTTCAGACGGTTG 58.708 50.000 0.00 0.00 41.32 3.77
96 97 2.249844 ATTGACGGTTTCAGACGGTT 57.750 45.000 0.00 0.00 41.32 4.44
97 98 2.140717 GAATTGACGGTTTCAGACGGT 58.859 47.619 0.00 0.00 43.60 4.83
98 99 2.139917 TGAATTGACGGTTTCAGACGG 58.860 47.619 0.00 0.00 34.94 4.79
99 100 3.870723 TTGAATTGACGGTTTCAGACG 57.129 42.857 0.00 0.00 34.94 4.18
100 101 6.314784 CCTATTTGAATTGACGGTTTCAGAC 58.685 40.000 0.00 0.00 34.94 3.51
101 102 5.414454 CCCTATTTGAATTGACGGTTTCAGA 59.586 40.000 0.00 0.00 34.94 3.27
102 103 5.183140 ACCCTATTTGAATTGACGGTTTCAG 59.817 40.000 0.00 0.00 34.94 3.02
103 104 5.074115 ACCCTATTTGAATTGACGGTTTCA 58.926 37.500 0.00 0.00 0.00 2.69
104 105 5.638596 ACCCTATTTGAATTGACGGTTTC 57.361 39.130 0.00 0.00 0.00 2.78
105 106 6.490721 TGTTACCCTATTTGAATTGACGGTTT 59.509 34.615 0.00 0.00 0.00 3.27
106 107 6.005198 TGTTACCCTATTTGAATTGACGGTT 58.995 36.000 0.00 0.00 0.00 4.44
107 108 5.562635 TGTTACCCTATTTGAATTGACGGT 58.437 37.500 0.00 0.00 0.00 4.83
108 109 6.503589 TTGTTACCCTATTTGAATTGACGG 57.496 37.500 0.00 0.00 0.00 4.79
109 110 8.980143 ATTTTGTTACCCTATTTGAATTGACG 57.020 30.769 0.00 0.00 0.00 4.35
123 124 9.961265 GCCTAACAGAATATTATTTTGTTACCC 57.039 33.333 20.36 13.73 34.22 3.69
124 125 9.659830 CGCCTAACAGAATATTATTTTGTTACC 57.340 33.333 20.36 15.36 34.22 2.85
136 137 9.372369 GCTATTCTATTTCGCCTAACAGAATAT 57.628 33.333 6.63 0.00 34.22 1.28
137 138 7.817962 GGCTATTCTATTTCGCCTAACAGAATA 59.182 37.037 6.21 6.21 37.76 1.75
138 139 6.651225 GGCTATTCTATTTCGCCTAACAGAAT 59.349 38.462 4.86 4.86 37.76 2.40
139 140 5.989777 GGCTATTCTATTTCGCCTAACAGAA 59.010 40.000 0.00 0.00 37.76 3.02
140 141 5.510861 GGGCTATTCTATTTCGCCTAACAGA 60.511 44.000 0.00 0.00 40.52 3.41
141 142 4.691216 GGGCTATTCTATTTCGCCTAACAG 59.309 45.833 0.00 0.00 40.52 3.16
142 143 4.101898 TGGGCTATTCTATTTCGCCTAACA 59.898 41.667 0.00 0.00 40.52 2.41
143 144 4.638304 TGGGCTATTCTATTTCGCCTAAC 58.362 43.478 0.00 0.00 40.52 2.34
144 145 4.967084 TGGGCTATTCTATTTCGCCTAA 57.033 40.909 0.00 0.00 40.52 2.69
145 146 4.967084 TTGGGCTATTCTATTTCGCCTA 57.033 40.909 0.00 0.00 40.52 3.93
146 147 3.857157 TTGGGCTATTCTATTTCGCCT 57.143 42.857 0.00 0.00 40.52 5.52
147 148 4.278419 ACATTTGGGCTATTCTATTTCGCC 59.722 41.667 0.00 0.00 39.98 5.54
148 149 5.215160 CACATTTGGGCTATTCTATTTCGC 58.785 41.667 0.00 0.00 0.00 4.70
149 150 6.183360 ACACACATTTGGGCTATTCTATTTCG 60.183 38.462 0.00 0.00 0.00 3.46
150 151 6.974622 CACACACATTTGGGCTATTCTATTTC 59.025 38.462 0.00 0.00 0.00 2.17
151 152 6.437162 ACACACACATTTGGGCTATTCTATTT 59.563 34.615 0.00 0.00 0.00 1.40
152 153 5.951747 ACACACACATTTGGGCTATTCTATT 59.048 36.000 0.00 0.00 0.00 1.73
153 154 5.357878 CACACACACATTTGGGCTATTCTAT 59.642 40.000 0.00 0.00 0.00 1.98
154 155 4.699735 CACACACACATTTGGGCTATTCTA 59.300 41.667 0.00 0.00 0.00 2.10
155 156 3.507233 CACACACACATTTGGGCTATTCT 59.493 43.478 0.00 0.00 0.00 2.40
156 157 3.255642 ACACACACACATTTGGGCTATTC 59.744 43.478 0.00 0.00 0.00 1.75
157 158 3.005684 CACACACACACATTTGGGCTATT 59.994 43.478 0.00 0.00 0.00 1.73
158 159 2.557924 CACACACACACATTTGGGCTAT 59.442 45.455 0.00 0.00 0.00 2.97
159 160 1.952990 CACACACACACATTTGGGCTA 59.047 47.619 0.00 0.00 0.00 3.93
160 161 0.746063 CACACACACACATTTGGGCT 59.254 50.000 0.00 0.00 0.00 5.19
161 162 0.459489 ACACACACACACATTTGGGC 59.541 50.000 0.00 0.00 0.00 5.36
162 163 1.747924 TCACACACACACACATTTGGG 59.252 47.619 0.00 0.00 0.00 4.12
163 164 3.713858 ATCACACACACACACATTTGG 57.286 42.857 0.00 0.00 0.00 3.28
164 165 6.696583 ACAAATATCACACACACACACATTTG 59.303 34.615 0.00 0.00 37.06 2.32
165 166 6.696583 CACAAATATCACACACACACACATTT 59.303 34.615 0.00 0.00 0.00 2.32
166 167 6.183360 ACACAAATATCACACACACACACATT 60.183 34.615 0.00 0.00 0.00 2.71
167 168 5.299028 ACACAAATATCACACACACACACAT 59.701 36.000 0.00 0.00 0.00 3.21
168 169 4.637977 ACACAAATATCACACACACACACA 59.362 37.500 0.00 0.00 0.00 3.72
169 170 5.168526 ACACAAATATCACACACACACAC 57.831 39.130 0.00 0.00 0.00 3.82
170 171 5.826601 AACACAAATATCACACACACACA 57.173 34.783 0.00 0.00 0.00 3.72
171 172 6.749578 TCAAAACACAAATATCACACACACAC 59.250 34.615 0.00 0.00 0.00 3.82
172 173 6.856895 TCAAAACACAAATATCACACACACA 58.143 32.000 0.00 0.00 0.00 3.72
173 174 7.748031 TTCAAAACACAAATATCACACACAC 57.252 32.000 0.00 0.00 0.00 3.82
174 175 8.763049 TTTTCAAAACACAAATATCACACACA 57.237 26.923 0.00 0.00 0.00 3.72
175 176 9.635632 CATTTTCAAAACACAAATATCACACAC 57.364 29.630 0.00 0.00 0.00 3.82
176 177 8.333908 GCATTTTCAAAACACAAATATCACACA 58.666 29.630 0.00 0.00 0.00 3.72
177 178 8.333908 TGCATTTTCAAAACACAAATATCACAC 58.666 29.630 0.00 0.00 0.00 3.82
178 179 8.429493 TGCATTTTCAAAACACAAATATCACA 57.571 26.923 0.00 0.00 0.00 3.58
179 180 8.011106 CCTGCATTTTCAAAACACAAATATCAC 58.989 33.333 0.00 0.00 0.00 3.06
180 181 7.172875 CCCTGCATTTTCAAAACACAAATATCA 59.827 33.333 0.00 0.00 0.00 2.15
181 182 7.387397 TCCCTGCATTTTCAAAACACAAATATC 59.613 33.333 0.00 0.00 0.00 1.63
221 222 5.102313 GCCTGTATTGCCACTGTTTTATTC 58.898 41.667 0.00 0.00 0.00 1.75
224 225 3.756434 GAGCCTGTATTGCCACTGTTTTA 59.244 43.478 0.00 0.00 0.00 1.52
245 246 0.934496 CCGCTGACAAACGACAAAGA 59.066 50.000 0.00 0.00 0.00 2.52
251 252 2.355363 CCGTCCGCTGACAAACGA 60.355 61.111 9.06 0.00 41.85 3.85
255 256 2.203084 TTTGCCGTCCGCTGACAA 60.203 55.556 9.06 0.00 41.85 3.18
258 259 2.357034 GTCTTTGCCGTCCGCTGA 60.357 61.111 0.00 0.00 38.78 4.26
287 288 0.970427 CCCCTTTGCCGTTTGCCTAT 60.970 55.000 0.00 0.00 40.16 2.57
293 294 2.190841 CGTGTCCCCTTTGCCGTTT 61.191 57.895 0.00 0.00 0.00 3.60
314 315 3.199071 TCTCAGGTTGTACAGGTTGTTGT 59.801 43.478 0.00 0.00 35.09 3.32
317 318 2.224305 GCTCTCAGGTTGTACAGGTTGT 60.224 50.000 0.00 0.00 0.00 3.32
326 327 1.757306 CCTGGTGCTCTCAGGTTGT 59.243 57.895 12.51 0.00 44.97 3.32
334 335 1.915769 GGGTCAGACCTGGTGCTCT 60.916 63.158 19.57 0.00 38.64 4.09
374 376 2.254546 ATGTCTTTGTCGTCTGCCAA 57.745 45.000 0.00 0.00 0.00 4.52
382 384 3.123621 GTCTGCCTTGTATGTCTTTGTCG 59.876 47.826 0.00 0.00 0.00 4.35
392 395 1.271379 ACTTTGCCGTCTGCCTTGTAT 60.271 47.619 0.00 0.00 40.16 2.29
400 403 2.996621 CCTTCTAAGACTTTGCCGTCTG 59.003 50.000 0.00 0.00 43.14 3.51
415 418 1.208052 GCCTGCATGTCACTCCTTCTA 59.792 52.381 0.00 0.00 0.00 2.10
437 440 5.439721 TGTCATATGACTTTAGCATGGCTT 58.560 37.500 30.67 0.00 44.99 4.35
441 444 6.292757 GCTGTCTGTCATATGACTTTAGCATG 60.293 42.308 30.67 16.43 44.99 4.06
442 445 5.757320 GCTGTCTGTCATATGACTTTAGCAT 59.243 40.000 30.67 0.00 44.99 3.79
449 452 4.511527 CCTTTGCTGTCTGTCATATGACT 58.488 43.478 30.67 0.00 44.99 3.41
467 470 2.001076 CCAAAGAACCAGAGCCCTTT 57.999 50.000 0.00 0.00 0.00 3.11
470 473 2.335712 CGCCAAAGAACCAGAGCCC 61.336 63.158 0.00 0.00 0.00 5.19
475 479 1.002468 CAACTGACGCCAAAGAACCAG 60.002 52.381 0.00 0.00 0.00 4.00
481 485 2.252260 CGCCAACTGACGCCAAAG 59.748 61.111 0.00 0.00 0.00 2.77
486 490 3.499737 CCATCCGCCAACTGACGC 61.500 66.667 0.00 0.00 0.00 5.19
493 497 0.531657 CAGATTTTGCCATCCGCCAA 59.468 50.000 0.00 0.00 36.24 4.52
494 498 2.191680 CAGATTTTGCCATCCGCCA 58.808 52.632 0.00 0.00 36.24 5.69
515 519 1.300634 GCCCCGTTAGGTGGCTAAA 59.699 57.895 8.97 0.00 45.02 1.85
557 561 2.154462 CCAAGTTGACGCCAAAGATCT 58.846 47.619 3.87 0.00 33.49 2.75
566 570 0.383949 TTTCTTGGCCAAGTTGACGC 59.616 50.000 37.97 0.00 39.38 5.19
572 576 0.668535 GTTCGCTTTCTTGGCCAAGT 59.331 50.000 37.97 0.00 39.38 3.16
581 585 3.680789 CAAAGTTTGTCGTTCGCTTTCT 58.319 40.909 7.48 0.00 0.00 2.52
589 593 1.001815 CGGATGGCAAAGTTTGTCGTT 60.002 47.619 15.76 5.82 38.34 3.85
635 645 4.081365 TCACATTAAGCTCCGGTAATGACA 60.081 41.667 22.55 10.14 34.86 3.58
646 656 6.035327 GCAAACAAATCCATCACATTAAGCTC 59.965 38.462 0.00 0.00 0.00 4.09
647 657 5.870978 GCAAACAAATCCATCACATTAAGCT 59.129 36.000 0.00 0.00 0.00 3.74
648 658 5.063817 GGCAAACAAATCCATCACATTAAGC 59.936 40.000 0.00 0.00 0.00 3.09
652 662 3.006752 ACGGCAAACAAATCCATCACATT 59.993 39.130 0.00 0.00 0.00 2.71
653 663 2.562298 ACGGCAAACAAATCCATCACAT 59.438 40.909 0.00 0.00 0.00 3.21
654 664 1.959985 ACGGCAAACAAATCCATCACA 59.040 42.857 0.00 0.00 0.00 3.58
658 668 2.030007 CACAGACGGCAAACAAATCCAT 60.030 45.455 0.00 0.00 0.00 3.41
693 703 1.588674 CACTACAAGACGGCAAACCA 58.411 50.000 0.00 0.00 34.57 3.67
713 723 4.193334 TCTCATCGGCGCCTGTCG 62.193 66.667 26.68 11.56 46.81 4.35
725 735 5.897824 TCGTTAGGGTTTTAGATCCTCTCAT 59.102 40.000 0.00 0.00 32.46 2.90
795 805 9.918630 GGTTCAACTAGATACAGTACAAAACTA 57.081 33.333 0.00 0.00 35.76 2.24
796 806 7.876582 GGGTTCAACTAGATACAGTACAAAACT 59.123 37.037 0.00 0.00 39.81 2.66
797 807 7.148689 CGGGTTCAACTAGATACAGTACAAAAC 60.149 40.741 0.00 0.00 0.00 2.43
798 808 6.869913 CGGGTTCAACTAGATACAGTACAAAA 59.130 38.462 0.00 0.00 0.00 2.44
799 809 6.209192 TCGGGTTCAACTAGATACAGTACAAA 59.791 38.462 0.00 0.00 0.00 2.83
800 810 5.711506 TCGGGTTCAACTAGATACAGTACAA 59.288 40.000 0.00 0.00 0.00 2.41
801 811 5.255687 TCGGGTTCAACTAGATACAGTACA 58.744 41.667 0.00 0.00 0.00 2.90
802 812 5.824904 TCGGGTTCAACTAGATACAGTAC 57.175 43.478 0.00 0.00 0.00 2.73
803 813 6.183360 CCATTCGGGTTCAACTAGATACAGTA 60.183 42.308 0.00 0.00 0.00 2.74
804 814 5.395324 CCATTCGGGTTCAACTAGATACAGT 60.395 44.000 0.00 0.00 0.00 3.55
805 815 5.050490 CCATTCGGGTTCAACTAGATACAG 58.950 45.833 0.00 0.00 0.00 2.74
866 929 3.073946 TCCCCTTCATTCTTCTTCCGTTT 59.926 43.478 0.00 0.00 0.00 3.60
867 930 2.642807 TCCCCTTCATTCTTCTTCCGTT 59.357 45.455 0.00 0.00 0.00 4.44
871 934 3.944650 GAGCTTCCCCTTCATTCTTCTTC 59.055 47.826 0.00 0.00 0.00 2.87
872 935 3.308760 GGAGCTTCCCCTTCATTCTTCTT 60.309 47.826 0.00 0.00 0.00 2.52
873 936 2.240921 GGAGCTTCCCCTTCATTCTTCT 59.759 50.000 0.00 0.00 0.00 2.85
951 1033 4.825679 GTGGGGAGGGGAGGGGAG 62.826 77.778 0.00 0.00 0.00 4.30
1718 2190 8.647796 TCATCTTCTGGAAACTCTAAACAGTTA 58.352 33.333 0.00 0.00 35.45 2.24
1724 2196 8.597167 TCATTCTCATCTTCTGGAAACTCTAAA 58.403 33.333 0.00 0.00 0.00 1.85
1816 2292 6.127786 GCTTGCCAAAGATGAATAAGAGACTT 60.128 38.462 0.00 0.00 35.19 3.01
1834 2310 7.838079 ATTCCTAAATGTATATTGCTTGCCA 57.162 32.000 0.00 0.00 0.00 4.92
1862 2338 1.086696 CGAAAGCTATGGTGGGTGTG 58.913 55.000 0.00 0.00 0.00 3.82
1881 2357 4.543177 CACGTTAAAATACGAAACGAGTGC 59.457 41.667 13.08 0.00 46.66 4.40
1882 2358 5.892776 TCACGTTAAAATACGAAACGAGTG 58.107 37.500 13.08 3.12 46.66 3.51
1890 2366 8.810427 GGATAGAAACATCACGTTAAAATACGA 58.190 33.333 2.93 0.00 43.99 3.43
1908 2384 3.650281 TGAGCTTGGCATGGATAGAAA 57.350 42.857 2.33 0.00 0.00 2.52
1913 2389 1.927487 TGTTTGAGCTTGGCATGGAT 58.073 45.000 2.33 0.00 0.00 3.41
1915 2391 4.338964 TGTATATGTTTGAGCTTGGCATGG 59.661 41.667 2.33 0.00 0.00 3.66
1920 2396 9.301153 GGTAAATTTGTATATGTTTGAGCTTGG 57.699 33.333 0.00 0.00 0.00 3.61
1921 2397 9.853555 TGGTAAATTTGTATATGTTTGAGCTTG 57.146 29.630 0.00 0.00 0.00 4.01
1935 2411 7.667635 TGAACTGTGGATGATGGTAAATTTGTA 59.332 33.333 0.00 0.00 0.00 2.41
1954 2430 0.607489 GTGGGCTGAGCATGAACTGT 60.607 55.000 6.82 0.00 0.00 3.55
1965 2441 2.969821 ATTTGGTAGTTGTGGGCTGA 57.030 45.000 0.00 0.00 0.00 4.26
1967 2443 3.304829 ACAAATTTGGTAGTTGTGGGCT 58.695 40.909 21.74 0.00 42.92 5.19
1978 2454 6.183360 CCACAGAACTGTAAGACAAATTTGGT 60.183 38.462 21.74 9.40 42.83 3.67
1980 2456 6.208644 CCCACAGAACTGTAAGACAAATTTG 58.791 40.000 16.67 16.67 42.83 2.32
1981 2457 5.221244 GCCCACAGAACTGTAAGACAAATTT 60.221 40.000 7.15 0.00 42.83 1.82
1983 2459 3.821033 GCCCACAGAACTGTAAGACAAAT 59.179 43.478 7.15 0.00 42.83 2.32
2001 2484 1.301716 GAAGTCGAAGCACTGCCCA 60.302 57.895 0.00 0.00 0.00 5.36
2003 2486 0.601311 ACAGAAGTCGAAGCACTGCC 60.601 55.000 0.00 0.00 32.67 4.85
2004 2487 0.510359 CACAGAAGTCGAAGCACTGC 59.490 55.000 9.11 0.00 32.67 4.40
2008 2491 0.389025 TCTGCACAGAAGTCGAAGCA 59.611 50.000 0.00 0.00 33.91 3.91
2014 2497 2.805099 CAGAAGGTTCTGCACAGAAGTC 59.195 50.000 13.21 10.82 46.93 3.01
2030 2513 5.299949 CCCCCAAACAAAATTCTTCAGAAG 58.700 41.667 3.45 3.45 37.48 2.85
2095 2580 4.469945 TCCAACCGGAGAGATTAATCAAGT 59.530 41.667 17.56 1.30 35.91 3.16
2096 2581 5.023533 TCCAACCGGAGAGATTAATCAAG 57.976 43.478 17.56 3.96 35.91 3.02
2098 2583 4.141711 CCTTCCAACCGGAGAGATTAATCA 60.142 45.833 17.56 0.00 44.10 2.57
2099 2584 4.101119 TCCTTCCAACCGGAGAGATTAATC 59.899 45.833 9.46 7.41 44.10 1.75
2100 2585 4.037927 TCCTTCCAACCGGAGAGATTAAT 58.962 43.478 9.46 0.00 44.10 1.40
2101 2586 3.446968 TCCTTCCAACCGGAGAGATTAA 58.553 45.455 9.46 0.00 44.10 1.40
2102 2587 3.110293 TCCTTCCAACCGGAGAGATTA 57.890 47.619 9.46 0.00 44.10 1.75
2103 2588 1.952621 TCCTTCCAACCGGAGAGATT 58.047 50.000 9.46 0.00 44.10 2.40
2104 2589 3.711849 TCCTTCCAACCGGAGAGAT 57.288 52.632 9.46 0.00 44.10 2.75
2109 2594 1.072505 GTTGCTCCTTCCAACCGGA 59.927 57.895 9.46 0.00 40.60 5.14
2110 2595 0.537371 AAGTTGCTCCTTCCAACCGG 60.537 55.000 0.00 0.00 42.63 5.28
2111 2596 0.593128 CAAGTTGCTCCTTCCAACCG 59.407 55.000 0.00 0.00 42.63 4.44
2112 2597 0.961753 CCAAGTTGCTCCTTCCAACC 59.038 55.000 0.00 0.00 42.63 3.77
2113 2598 1.692411 ACCAAGTTGCTCCTTCCAAC 58.308 50.000 0.00 0.00 42.11 3.77
2114 2599 2.031120 CAACCAAGTTGCTCCTTCCAA 58.969 47.619 0.00 0.00 36.73 3.53
2115 2600 1.064017 ACAACCAAGTTGCTCCTTCCA 60.064 47.619 7.36 0.00 46.20 3.53
2116 2601 1.692411 ACAACCAAGTTGCTCCTTCC 58.308 50.000 7.36 0.00 46.20 3.46
2117 2602 3.355626 GAACAACCAAGTTGCTCCTTC 57.644 47.619 7.36 0.99 46.20 3.46
2129 2614 2.838637 AAAAGGGAGTGGAACAACCA 57.161 45.000 0.00 0.00 44.16 3.67
2152 2637 5.071788 ACCCAACAGTCTAGAAGAAATCACA 59.928 40.000 0.00 0.00 0.00 3.58
2153 2638 5.552178 ACCCAACAGTCTAGAAGAAATCAC 58.448 41.667 0.00 0.00 0.00 3.06
2185 2670 6.240894 AGCACCTCAGTCAGATTATGAAAAA 58.759 36.000 0.00 0.00 40.43 1.94
2253 2738 5.731406 GCACATATTGCCAACAGACACTATG 60.731 44.000 0.00 0.00 46.63 2.23
2302 2787 6.313658 TGCAGAGCAATTACACACTAACATAG 59.686 38.462 0.00 0.00 34.76 2.23
2371 2856 9.897744 GATAGAATCACACAACTGATTTTGAAA 57.102 29.630 0.00 0.00 40.33 2.69
2372 2857 9.288576 AGATAGAATCACACAACTGATTTTGAA 57.711 29.630 0.00 0.00 40.33 2.69
2373 2858 8.853077 AGATAGAATCACACAACTGATTTTGA 57.147 30.769 0.00 0.00 40.33 2.69
2442 2927 3.861276 TCCTGCATTTCAAGCATCAAG 57.139 42.857 0.00 0.00 41.82 3.02
2465 2950 4.885325 TGTCAGAGTAGTACACACACTCAA 59.115 41.667 15.10 4.79 40.94 3.02
2473 2958 5.881777 TCATCACTGTCAGAGTAGTACAC 57.118 43.478 6.91 0.00 31.73 2.90
2534 3019 9.023962 ACTATCACACCACAAAATTCAATATGT 57.976 29.630 0.00 0.00 0.00 2.29
2610 3095 3.482598 GCATCTCATTGTTCTGTTCGTCG 60.483 47.826 0.00 0.00 0.00 5.12
2634 3119 4.183101 TCTTTTGCTTTTTCACAGCCAAG 58.817 39.130 0.00 0.00 36.33 3.61
2754 3239 4.870426 CACACATGACATAACTACAGACCC 59.130 45.833 0.00 0.00 0.00 4.46
2780 3266 7.873739 AAAATCAAATTTTAAGAGAGGCGTG 57.126 32.000 0.00 0.00 40.44 5.34
2781 3267 9.626045 CTAAAAATCAAATTTTAAGAGAGGCGT 57.374 29.630 0.00 0.00 41.30 5.68
2817 3356 3.717707 TGCTTCGAGGGATAGAAATTCG 58.282 45.455 0.00 0.00 0.00 3.34
2849 3388 8.635765 ATCTATAACAACTTGTGTGGTTCAAT 57.364 30.769 0.00 0.00 40.60 2.57
2888 3429 6.930164 AGATCAACATTCAGAAGCATAGCTAG 59.070 38.462 0.00 0.00 38.25 3.42
2984 3525 6.846505 TCAATCCTGATAGAAATCACCTAGGT 59.153 38.462 9.21 9.21 37.20 3.08
3042 3583 3.243839 GCCATTTCTCAAGGAAGTTTGCA 60.244 43.478 0.00 0.00 35.16 4.08
3218 3759 9.690913 TGTTCATCTGAATCCTATTGAAGATTT 57.309 29.630 0.00 0.00 36.33 2.17
3276 3817 6.838401 AGGAGGATCTTTATCACCAGAATT 57.162 37.500 0.00 0.00 34.55 2.17
3509 4050 8.561738 AAATTTCTAAGAGAGCACGGAAAATA 57.438 30.769 0.00 0.00 0.00 1.40
3812 4353 6.774656 AGAACAGGTTTCAAACATGAATCTCT 59.225 34.615 21.27 12.96 45.40 3.10
3885 4426 4.871933 AACAGCCATTTTACAGGGAAAG 57.128 40.909 0.00 0.00 0.00 2.62
3932 4484 9.211485 CCCTTATTAAAGAAGAAGTCGTACAAA 57.789 33.333 0.00 0.00 32.92 2.83
3933 4485 8.587608 TCCCTTATTAAAGAAGAAGTCGTACAA 58.412 33.333 0.00 0.00 32.92 2.41
3935 4487 8.465201 TCTCCCTTATTAAAGAAGAAGTCGTAC 58.535 37.037 2.78 0.00 32.92 3.67
3936 4488 8.585471 TCTCCCTTATTAAAGAAGAAGTCGTA 57.415 34.615 2.78 0.00 32.92 3.43
3937 4489 7.477945 TCTCCCTTATTAAAGAAGAAGTCGT 57.522 36.000 2.78 0.00 32.92 4.34
3938 4490 8.821894 CATTCTCCCTTATTAAAGAAGAAGTCG 58.178 37.037 2.78 0.00 32.92 4.18
3952 4505 5.488919 TCCTCTTGTTCACATTCTCCCTTAT 59.511 40.000 0.00 0.00 0.00 1.73
3958 4511 7.032377 ACTTTTTCCTCTTGTTCACATTCTC 57.968 36.000 0.00 0.00 0.00 2.87
3979 4532 3.319689 CCAACCCAAATAACAACCGACTT 59.680 43.478 0.00 0.00 0.00 3.01
4029 4583 0.469917 GGAAGGCAGATCGATTCCCA 59.530 55.000 0.00 0.00 36.08 4.37
4054 4629 7.174253 AGCAGAAATATACGACAGGTTCAAAAA 59.826 33.333 0.00 0.00 0.00 1.94
4068 4643 9.765795 ACATTCCTTACAGTAGCAGAAATATAC 57.234 33.333 0.00 0.00 0.00 1.47
4079 4654 7.228706 AGGTGTTTGAAACATTCCTTACAGTAG 59.771 37.037 14.40 0.00 44.35 2.57
4151 4727 6.204108 GCAACACTAAAATACCACAGTACAGT 59.796 38.462 0.00 0.00 0.00 3.55
4451 5031 4.039245 CCAGACAGTCAGGTAAGAGTGAAA 59.961 45.833 2.66 0.00 40.60 2.69
4495 5075 8.450578 TTGGAACTAGAAAGGTATGCATTATG 57.549 34.615 3.54 0.00 0.00 1.90
4635 5215 5.363939 GCCTGTCTAAGAATAGCACTCAAT 58.636 41.667 0.00 0.00 0.00 2.57
4978 5560 9.581099 CGCCTTAAAAACATAGGAATTAACAAT 57.419 29.630 0.00 0.00 0.00 2.71
4980 5562 8.113173 ACGCCTTAAAAACATAGGAATTAACA 57.887 30.769 0.00 0.00 0.00 2.41
4981 5563 7.699391 GGACGCCTTAAAAACATAGGAATTAAC 59.301 37.037 0.00 0.00 0.00 2.01
4982 5564 7.414319 CGGACGCCTTAAAAACATAGGAATTAA 60.414 37.037 0.00 0.00 0.00 1.40
4983 5565 6.037391 CGGACGCCTTAAAAACATAGGAATTA 59.963 38.462 0.00 0.00 0.00 1.40
4984 5566 5.163693 CGGACGCCTTAAAAACATAGGAATT 60.164 40.000 0.00 0.00 0.00 2.17
4985 5567 4.334481 CGGACGCCTTAAAAACATAGGAAT 59.666 41.667 0.00 0.00 0.00 3.01
4986 5568 3.685756 CGGACGCCTTAAAAACATAGGAA 59.314 43.478 0.00 0.00 0.00 3.36
4987 5569 3.264104 CGGACGCCTTAAAAACATAGGA 58.736 45.455 0.00 0.00 0.00 2.94
4988 5570 3.004862 ACGGACGCCTTAAAAACATAGG 58.995 45.455 0.00 0.00 0.00 2.57
4989 5571 5.220529 CCTTACGGACGCCTTAAAAACATAG 60.221 44.000 0.00 0.00 0.00 2.23
4990 5572 4.630940 CCTTACGGACGCCTTAAAAACATA 59.369 41.667 0.00 0.00 0.00 2.29
4991 5573 3.437741 CCTTACGGACGCCTTAAAAACAT 59.562 43.478 0.00 0.00 0.00 2.71
4992 5574 2.807392 CCTTACGGACGCCTTAAAAACA 59.193 45.455 0.00 0.00 0.00 2.83
4993 5575 2.413239 GCCTTACGGACGCCTTAAAAAC 60.413 50.000 0.00 0.00 0.00 2.43
4994 5576 1.805943 GCCTTACGGACGCCTTAAAAA 59.194 47.619 0.00 0.00 0.00 1.94
4995 5577 1.441738 GCCTTACGGACGCCTTAAAA 58.558 50.000 0.00 0.00 0.00 1.52
4996 5578 0.737019 CGCCTTACGGACGCCTTAAA 60.737 55.000 0.00 0.00 38.44 1.52
4997 5579 1.153784 CGCCTTACGGACGCCTTAA 60.154 57.895 0.00 0.00 38.44 1.85
4998 5580 2.491152 CGCCTTACGGACGCCTTA 59.509 61.111 0.00 0.00 38.44 2.69
5232 5814 5.163652 ACCTATGTTTTTAAGGCGATGCTTC 60.164 40.000 0.00 0.00 33.42 3.86
5233 5815 4.705023 ACCTATGTTTTTAAGGCGATGCTT 59.295 37.500 0.00 0.00 33.42 3.91
5234 5816 4.270008 ACCTATGTTTTTAAGGCGATGCT 58.730 39.130 0.00 0.00 33.42 3.79
5235 5817 4.632538 ACCTATGTTTTTAAGGCGATGC 57.367 40.909 0.00 0.00 33.42 3.91
5236 5818 9.233232 GAATTAACCTATGTTTTTAAGGCGATG 57.767 33.333 0.00 0.00 35.87 3.84
5237 5819 8.962679 TGAATTAACCTATGTTTTTAAGGCGAT 58.037 29.630 0.00 0.00 35.87 4.58
5238 5820 8.238631 GTGAATTAACCTATGTTTTTAAGGCGA 58.761 33.333 0.00 0.00 35.87 5.54
5239 5821 8.024285 TGTGAATTAACCTATGTTTTTAAGGCG 58.976 33.333 0.00 0.00 35.87 5.52
5240 5822 9.699703 TTGTGAATTAACCTATGTTTTTAAGGC 57.300 29.630 0.00 0.00 35.87 4.35
5245 5827 9.040939 GCAGTTTGTGAATTAACCTATGTTTTT 57.959 29.630 0.00 0.00 35.87 1.94
5246 5828 8.200792 TGCAGTTTGTGAATTAACCTATGTTTT 58.799 29.630 0.00 0.00 35.87 2.43
5247 5829 7.651704 GTGCAGTTTGTGAATTAACCTATGTTT 59.348 33.333 0.00 0.00 35.87 2.83
5248 5830 7.145323 GTGCAGTTTGTGAATTAACCTATGTT 58.855 34.615 0.00 0.00 38.52 2.71
5249 5831 6.294508 GGTGCAGTTTGTGAATTAACCTATGT 60.295 38.462 0.00 0.00 0.00 2.29
5250 5832 6.092748 GGTGCAGTTTGTGAATTAACCTATG 58.907 40.000 0.00 0.00 0.00 2.23
5251 5833 5.772672 TGGTGCAGTTTGTGAATTAACCTAT 59.227 36.000 0.00 0.00 0.00 2.57
5252 5834 5.133941 TGGTGCAGTTTGTGAATTAACCTA 58.866 37.500 0.00 0.00 0.00 3.08
5253 5835 3.957497 TGGTGCAGTTTGTGAATTAACCT 59.043 39.130 0.00 0.00 0.00 3.50
5480 6068 8.182227 GCATATCAATATCCATGTGATGTCAAG 58.818 37.037 6.12 0.00 34.01 3.02
5634 6222 7.497249 CCCCTTATTATCTGAACAACTGAAGAG 59.503 40.741 0.00 0.00 0.00 2.85
5694 6282 1.542108 GCAAGCTTCAGTCTCAGTGGT 60.542 52.381 0.00 0.00 0.00 4.16
5801 6389 0.762418 TGTTTGCTCTTTCGGAGGGA 59.238 50.000 0.00 0.00 42.08 4.20
5807 6395 4.920376 TCCTTTTTCTGTTTGCTCTTTCG 58.080 39.130 0.00 0.00 0.00 3.46
5814 6402 4.119862 GGGTCTTTCCTTTTTCTGTTTGC 58.880 43.478 0.00 0.00 36.25 3.68
5844 6432 1.542915 TGGCGTACCTTCAGTAGTGAC 59.457 52.381 0.00 0.00 36.63 3.67
5870 6458 7.334858 TCCACATGTTATAACTGAGCAATACA 58.665 34.615 16.33 0.00 0.00 2.29
5881 6469 9.691362 AGAACACAAAATTCCACATGTTATAAC 57.309 29.630 8.75 8.75 30.72 1.89
5884 6472 9.260002 GAAAGAACACAAAATTCCACATGTTAT 57.740 29.630 0.00 0.00 30.72 1.89
5885 6473 8.253810 TGAAAGAACACAAAATTCCACATGTTA 58.746 29.630 0.00 0.00 30.72 2.41
5886 6474 7.102346 TGAAAGAACACAAAATTCCACATGTT 58.898 30.769 0.00 0.00 33.15 2.71
5887 6475 6.638610 TGAAAGAACACAAAATTCCACATGT 58.361 32.000 0.00 0.00 0.00 3.21
5888 6476 7.225145 ACATGAAAGAACACAAAATTCCACATG 59.775 33.333 0.00 0.00 37.37 3.21
5958 6546 8.500773 GTCCGAAGAGTTATATACTTCTCAGAG 58.499 40.741 0.00 0.00 37.17 3.35
5980 6568 1.064003 TCATATGGAATGGGGGTCCG 58.936 55.000 2.13 0.00 38.06 4.79
5983 6571 5.644188 CATTTAGTCATATGGAATGGGGGT 58.356 41.667 2.13 0.00 0.00 4.95
6068 6926 7.951530 AAATGAGCAATCCTTACAAAAACAG 57.048 32.000 0.00 0.00 0.00 3.16
6178 7044 8.470805 ACATCTTACATTTGTCTACAGAGGTAG 58.529 37.037 0.00 0.00 46.85 3.18
6179 7045 8.362464 ACATCTTACATTTGTCTACAGAGGTA 57.638 34.615 0.00 0.00 0.00 3.08
6180 7046 7.246171 ACATCTTACATTTGTCTACAGAGGT 57.754 36.000 0.00 0.00 0.00 3.85
6181 7047 8.553459 AAACATCTTACATTTGTCTACAGAGG 57.447 34.615 0.00 0.00 0.00 3.69
6185 7051 9.787435 ACCTAAAACATCTTACATTTGTCTACA 57.213 29.630 0.00 0.00 0.00 2.74
6188 7054 8.784043 GTGACCTAAAACATCTTACATTTGTCT 58.216 33.333 0.00 0.00 0.00 3.41
6189 7055 8.784043 AGTGACCTAAAACATCTTACATTTGTC 58.216 33.333 0.00 0.00 0.00 3.18
6190 7056 8.691661 AGTGACCTAAAACATCTTACATTTGT 57.308 30.769 0.00 0.00 0.00 2.83
6213 7079 3.641906 AGCCACACAGACACTAAAGTAGT 59.358 43.478 0.00 0.00 40.28 2.73
6214 7080 4.238514 GAGCCACACAGACACTAAAGTAG 58.761 47.826 0.00 0.00 0.00 2.57
6215 7081 3.006537 GGAGCCACACAGACACTAAAGTA 59.993 47.826 0.00 0.00 0.00 2.24
6216 7082 2.224305 GGAGCCACACAGACACTAAAGT 60.224 50.000 0.00 0.00 0.00 2.66
6217 7083 2.037772 AGGAGCCACACAGACACTAAAG 59.962 50.000 0.00 0.00 0.00 1.85
6218 7084 2.047061 AGGAGCCACACAGACACTAAA 58.953 47.619 0.00 0.00 0.00 1.85
6219 7085 1.344438 CAGGAGCCACACAGACACTAA 59.656 52.381 0.00 0.00 0.00 2.24
6220 7086 0.969149 CAGGAGCCACACAGACACTA 59.031 55.000 0.00 0.00 0.00 2.74
6221 7087 1.050988 ACAGGAGCCACACAGACACT 61.051 55.000 0.00 0.00 0.00 3.55
6225 7093 0.179020 CCAAACAGGAGCCACACAGA 60.179 55.000 0.00 0.00 41.22 3.41
6249 7117 0.174617 GCAGGGTGCAGACTAGAGAC 59.825 60.000 0.00 0.00 44.26 3.36
6343 7211 0.872388 GTTCCTTGGCACCTAACACG 59.128 55.000 0.00 0.00 0.00 4.49
6392 7260 1.870402 TCGATTGCTGAAAGAACGCAA 59.130 42.857 0.00 0.00 46.25 4.85
6639 7507 2.863809 ACACTGTAAAAGCCTCCTTGG 58.136 47.619 0.00 0.00 39.35 3.61
6643 7511 5.959618 ACAATTACACTGTAAAAGCCTCC 57.040 39.130 5.73 0.00 0.00 4.30
6664 7534 4.211794 CCAATCATGGTCAAAACTTGCAAC 59.788 41.667 0.00 0.00 42.18 4.17
6698 7568 5.212934 GCTTAAAGCTTATATGGAAACGGC 58.787 41.667 0.00 0.00 38.45 5.68
6725 7597 4.305769 TCCCGCAAAATTGAAAGAACATG 58.694 39.130 0.00 0.00 0.00 3.21
6797 7669 6.604396 AGCATTCAAAAGGATGTCACATATCA 59.396 34.615 0.00 0.00 0.00 2.15
6798 7670 6.916387 CAGCATTCAAAAGGATGTCACATATC 59.084 38.462 0.00 0.00 0.00 1.63
6799 7671 6.604396 TCAGCATTCAAAAGGATGTCACATAT 59.396 34.615 0.00 0.00 0.00 1.78
6800 7672 5.945191 TCAGCATTCAAAAGGATGTCACATA 59.055 36.000 0.00 0.00 0.00 2.29
6801 7673 4.768448 TCAGCATTCAAAAGGATGTCACAT 59.232 37.500 0.00 0.00 0.00 3.21
6802 7674 4.143543 TCAGCATTCAAAAGGATGTCACA 58.856 39.130 0.00 0.00 0.00 3.58
6803 7675 4.771590 TCAGCATTCAAAAGGATGTCAC 57.228 40.909 0.00 0.00 0.00 3.67
6967 7854 5.355071 GTCAGGTCTGCAATCATAAACATGA 59.645 40.000 0.00 0.00 34.73 3.07
6980 7867 1.252175 GAGAGTCAGTCAGGTCTGCA 58.748 55.000 0.00 0.00 35.63 4.41
7167 8071 2.252260 CCTGCGAACAAACAGCGG 59.748 61.111 0.00 0.00 37.04 5.52
7243 8147 4.888917 TCAGTTTGTCGTCCATGTGATAA 58.111 39.130 0.00 0.00 0.00 1.75
7259 8163 4.141390 ACATTGGAGTCAGTTCCTCAGTTT 60.141 41.667 0.00 0.00 38.12 2.66
7271 8180 1.170442 CTGCATGCACATTGGAGTCA 58.830 50.000 18.46 0.00 0.00 3.41
7277 8186 2.540157 CGATACCACTGCATGCACATTG 60.540 50.000 18.46 13.77 0.00 2.82
7286 8195 0.102300 CGGTCATCGATACCACTGCA 59.898 55.000 18.21 0.00 42.43 4.41
7367 8278 3.489785 CGCCAAATCTACTCAATCGGTAC 59.510 47.826 0.00 0.00 0.00 3.34
7373 8284 3.937814 TCACACGCCAAATCTACTCAAT 58.062 40.909 0.00 0.00 0.00 2.57
7375 8286 3.394674 TTCACACGCCAAATCTACTCA 57.605 42.857 0.00 0.00 0.00 3.41
7388 8299 3.679980 ACAAAGATCCTTCGATTCACACG 59.320 43.478 0.00 0.00 0.00 4.49
7398 8309 1.936547 CCAGCGCTACAAAGATCCTTC 59.063 52.381 10.99 0.00 0.00 3.46
7404 8315 3.002791 CAGAATTCCAGCGCTACAAAGA 58.997 45.455 10.99 0.00 0.00 2.52
7411 8322 2.404995 GCTGCAGAATTCCAGCGCT 61.405 57.895 20.43 2.64 44.12 5.92
7453 8364 3.872511 TTGGGCAACATAAATGAGCTG 57.127 42.857 0.00 0.00 39.74 4.24
7513 8434 7.509546 TGCTAGTTAAGATTCCCCAAGAATAG 58.490 38.462 0.00 0.00 45.52 1.73
7524 8445 5.129650 AGGGAAGGTCTGCTAGTTAAGATTC 59.870 44.000 0.00 0.00 0.00 2.52
7600 8535 2.159599 CGCCTTTGACTGCTTTGAGATC 60.160 50.000 0.00 0.00 0.00 2.75
7620 8555 2.223157 TGTTTTCTTTTCTGACGTGGCG 60.223 45.455 0.00 0.00 0.00 5.69
7666 8601 0.110509 GTTGTAGACGAGTCGTGCGA 60.111 55.000 25.31 9.91 41.37 5.10
7699 8634 0.536006 GGATGCGAAATGGGGAGGAG 60.536 60.000 0.00 0.00 0.00 3.69
7702 8637 1.893808 CGGGATGCGAAATGGGGAG 60.894 63.158 0.00 0.00 0.00 4.30
7721 8656 3.062466 CTCTCACTCCGCGGGTGA 61.062 66.667 33.01 33.01 40.78 4.02
7722 8657 3.057547 CTCTCTCACTCCGCGGGTG 62.058 68.421 29.72 29.72 36.17 4.61
7723 8658 2.752238 CTCTCTCACTCCGCGGGT 60.752 66.667 27.83 19.40 0.00 5.28
7724 8659 3.522731 CCTCTCTCACTCCGCGGG 61.523 72.222 27.83 18.67 0.00 6.13
7725 8660 3.522731 CCCTCTCTCACTCCGCGG 61.523 72.222 22.12 22.12 0.00 6.46
7726 8661 1.791103 GATCCCTCTCTCACTCCGCG 61.791 65.000 0.00 0.00 0.00 6.46
7728 8663 0.179043 TCGATCCCTCTCTCACTCCG 60.179 60.000 0.00 0.00 0.00 4.63
7730 8665 2.045561 TGTCGATCCCTCTCTCACTC 57.954 55.000 0.00 0.00 0.00 3.51
7733 8668 1.272480 TGGTTGTCGATCCCTCTCTCA 60.272 52.381 0.00 0.00 0.00 3.27
7734 8669 1.475403 TGGTTGTCGATCCCTCTCTC 58.525 55.000 0.00 0.00 0.00 3.20
7735 8670 1.759445 CATGGTTGTCGATCCCTCTCT 59.241 52.381 0.00 0.00 0.00 3.10
7737 8672 1.759445 CTCATGGTTGTCGATCCCTCT 59.241 52.381 0.00 0.00 0.00 3.69
7738 8673 1.202580 CCTCATGGTTGTCGATCCCTC 60.203 57.143 0.00 0.00 0.00 4.30
7739 8674 0.833287 CCTCATGGTTGTCGATCCCT 59.167 55.000 0.00 0.00 0.00 4.20
7740 8675 0.815615 GCCTCATGGTTGTCGATCCC 60.816 60.000 0.00 0.00 35.27 3.85
7741 8676 1.154205 CGCCTCATGGTTGTCGATCC 61.154 60.000 0.00 0.00 35.27 3.36
7742 8677 0.179111 TCGCCTCATGGTTGTCGATC 60.179 55.000 0.00 0.00 35.27 3.69
7748 8683 1.003355 ACAGGTCGCCTCATGGTTG 60.003 57.895 0.00 0.00 35.27 3.77
7749 8684 1.003355 CACAGGTCGCCTCATGGTT 60.003 57.895 0.00 0.00 35.27 3.67
7751 8686 1.448540 GTCACAGGTCGCCTCATGG 60.449 63.158 0.00 0.00 0.00 3.66
7753 8688 2.573869 CGTCACAGGTCGCCTCAT 59.426 61.111 0.00 0.00 0.00 2.90
7754 8689 3.680786 CCGTCACAGGTCGCCTCA 61.681 66.667 0.00 0.00 0.00 3.86
7755 8690 4.436998 CCCGTCACAGGTCGCCTC 62.437 72.222 0.00 0.00 0.00 4.70
7758 8693 2.737376 GTTCCCGTCACAGGTCGC 60.737 66.667 0.00 0.00 0.00 5.19
7759 8694 2.048503 GGTTCCCGTCACAGGTCG 60.049 66.667 0.00 0.00 0.00 4.79
7791 8726 4.759096 GATGCAACCACGCCACGC 62.759 66.667 0.00 0.00 0.00 5.34
7792 8727 2.582202 GATGATGCAACCACGCCACG 62.582 60.000 0.00 0.00 0.00 4.94
7794 8729 2.045708 GGATGATGCAACCACGCCA 61.046 57.895 0.00 0.00 0.00 5.69
7796 8731 1.386525 ATGGGATGATGCAACCACGC 61.387 55.000 0.00 0.00 35.52 5.34
7797 8732 0.382873 CATGGGATGATGCAACCACG 59.617 55.000 0.00 0.00 35.52 4.94
7798 8733 1.477553 ACATGGGATGATGCAACCAC 58.522 50.000 0.00 0.00 35.52 4.16
7799 8734 2.934887 CTACATGGGATGATGCAACCA 58.065 47.619 0.00 0.00 37.41 3.67
7800 8735 1.610522 GCTACATGGGATGATGCAACC 59.389 52.381 0.00 0.00 34.30 3.77
7809 9086 4.202440 CCTTCAGAAGATGCTACATGGGAT 60.202 45.833 12.14 0.00 0.00 3.85
7828 9189 2.224257 TGCAGTGGGAAAATTTGCCTTC 60.224 45.455 16.99 10.12 42.41 3.46
7883 9244 1.218316 CTCCAAGTCAGGCGGGTAC 59.782 63.158 0.00 0.00 0.00 3.34
7884 9245 0.543410 TTCTCCAAGTCAGGCGGGTA 60.543 55.000 0.00 0.00 0.00 3.69
7885 9246 1.841556 TTCTCCAAGTCAGGCGGGT 60.842 57.895 0.00 0.00 0.00 5.28
7886 9247 1.376037 GTTCTCCAAGTCAGGCGGG 60.376 63.158 0.00 0.00 0.00 6.13
7887 9248 1.376037 GGTTCTCCAAGTCAGGCGG 60.376 63.158 0.00 0.00 0.00 6.13
7888 9249 0.390472 GAGGTTCTCCAAGTCAGGCG 60.390 60.000 0.00 0.00 35.89 5.52
7889 9250 0.390472 CGAGGTTCTCCAAGTCAGGC 60.390 60.000 0.00 0.00 35.89 4.85
7890 9251 0.247736 CCGAGGTTCTCCAAGTCAGG 59.752 60.000 0.00 0.00 35.89 3.86
7952 9323 5.539574 CACATTGGCCATAAATCCATTCCTA 59.460 40.000 6.09 0.00 31.54 2.94
7959 9330 3.385755 AGAAGCACATTGGCCATAAATCC 59.614 43.478 6.09 0.00 0.00 3.01
7960 9331 4.660789 AGAAGCACATTGGCCATAAATC 57.339 40.909 6.09 0.00 0.00 2.17
7961 9332 4.467082 TGAAGAAGCACATTGGCCATAAAT 59.533 37.500 6.09 0.00 0.00 1.40
7962 9333 3.831333 TGAAGAAGCACATTGGCCATAAA 59.169 39.130 6.09 0.00 0.00 1.40
7963 9334 3.429492 TGAAGAAGCACATTGGCCATAA 58.571 40.909 6.09 0.00 0.00 1.90
7964 9335 3.018856 CTGAAGAAGCACATTGGCCATA 58.981 45.455 6.09 0.00 0.00 2.74
7965 9336 1.822990 CTGAAGAAGCACATTGGCCAT 59.177 47.619 6.09 0.00 0.00 4.40
7966 9337 1.250328 CTGAAGAAGCACATTGGCCA 58.750 50.000 0.00 0.00 0.00 5.36
7986 9357 1.068333 CCTGTTTTTCATGTCGGCCAG 60.068 52.381 2.24 0.00 0.00 4.85
7991 9362 5.371115 AATACACCCTGTTTTTCATGTCG 57.629 39.130 0.00 0.00 0.00 4.35
7997 9368 6.423604 CCATGTGAAAATACACCCTGTTTTTC 59.576 38.462 0.00 11.64 39.69 2.29
8018 9389 9.520204 CTTATAAACTGCAATTTCCTAACCATG 57.480 33.333 0.00 0.00 0.00 3.66
8019 9390 8.197439 GCTTATAAACTGCAATTTCCTAACCAT 58.803 33.333 0.00 0.00 0.00 3.55
8068 9439 9.533831 AAACAAGTATTATGGACCTTTTCTGAT 57.466 29.630 0.00 0.00 0.00 2.90
8069 9440 8.934023 AAACAAGTATTATGGACCTTTTCTGA 57.066 30.769 0.00 0.00 0.00 3.27
8072 9443 7.870445 TGCAAAACAAGTATTATGGACCTTTTC 59.130 33.333 0.00 0.00 0.00 2.29
8129 9500 8.415950 TTTGAAAATGGCTCCTTACAGATTAA 57.584 30.769 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.