Multiple sequence alignment - TraesCS5A01G018100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G018100 chr5A 100.000 2678 0 0 1 2678 14256163 14253486 0.000000e+00 4946.0
1 TraesCS5A01G018100 chr5A 81.140 684 119 7 1000 1679 14416682 14417359 8.430000e-150 540.0
2 TraesCS5A01G018100 chr5A 83.333 156 23 3 575 727 548241759 548241914 1.000000e-29 141.0
3 TraesCS5A01G018100 chr5A 95.918 49 0 2 763 811 14255355 14255309 7.950000e-11 78.7
4 TraesCS5A01G018100 chr5A 95.918 49 0 2 809 855 14255401 14255353 7.950000e-11 78.7
5 TraesCS5A01G018100 chr5B 90.472 1081 78 13 809 1871 15192171 15191098 0.000000e+00 1402.0
6 TraesCS5A01G018100 chr5B 89.349 845 67 11 1041 1871 15015055 15015890 0.000000e+00 1040.0
7 TraesCS5A01G018100 chr5B 84.772 1031 109 27 883 1868 15050491 15051518 0.000000e+00 990.0
8 TraesCS5A01G018100 chr5B 88.142 565 60 4 1158 1722 15094138 15094695 0.000000e+00 665.0
9 TraesCS5A01G018100 chr5B 83.287 718 74 24 1185 1868 15075229 15075934 1.050000e-173 619.0
10 TraesCS5A01G018100 chr5B 82.507 686 109 9 998 1679 15197073 15197751 2.300000e-165 592.0
11 TraesCS5A01G018100 chr5B 84.276 566 77 6 253 810 15192685 15192124 2.350000e-150 542.0
12 TraesCS5A01G018100 chr5B 80.775 723 68 37 1159 1847 15128103 15128788 1.430000e-137 499.0
13 TraesCS5A01G018100 chr5B 84.016 488 59 7 324 810 15014432 15014901 4.070000e-123 451.0
14 TraesCS5A01G018100 chr5B 91.327 196 11 3 810 1001 15014855 15015048 2.040000e-66 263.0
15 TraesCS5A01G018100 chr5B 88.439 173 14 3 31 202 15192852 15192685 1.260000e-48 204.0
16 TraesCS5A01G018100 chr5B 95.370 108 5 0 28 135 15013739 15013846 3.540000e-39 172.0
17 TraesCS5A01G018100 chr5B 86.813 91 9 1 244 331 15013929 15014019 6.100000e-17 99.0
18 TraesCS5A01G018100 chr5B 94.737 38 1 1 794 830 15050468 15050505 1.040000e-04 58.4
19 TraesCS5A01G018100 chr2D 86.905 840 76 20 1871 2678 639150807 639149970 0.000000e+00 911.0
20 TraesCS5A01G018100 chr2D 82.639 144 19 5 591 730 113090767 113090626 3.620000e-24 122.0
21 TraesCS5A01G018100 chr7D 87.936 688 54 15 1871 2532 636797105 636796421 0.000000e+00 784.0
22 TraesCS5A01G018100 chr7D 80.193 414 52 12 2290 2675 1851495 1851906 1.570000e-72 283.0
23 TraesCS5A01G018100 chr4D 84.390 820 80 21 1878 2672 487231845 487232641 0.000000e+00 761.0
24 TraesCS5A01G018100 chr2A 83.572 767 77 23 1878 2609 486467851 486467099 0.000000e+00 673.0
25 TraesCS5A01G018100 chr2A 80.206 778 107 31 1939 2678 676995324 676994556 8.430000e-150 540.0
26 TraesCS5A01G018100 chr2A 85.890 163 20 2 575 734 154199218 154199056 1.270000e-38 171.0
27 TraesCS5A01G018100 chr1D 82.740 759 77 21 1878 2609 479766519 479765788 6.290000e-176 627.0
28 TraesCS5A01G018100 chr4B 81.472 761 82 32 1878 2609 634731268 634731998 1.080000e-158 569.0
29 TraesCS5A01G018100 chr3B 86.340 388 40 5 2290 2674 540466158 540465781 6.900000e-111 411.0
30 TraesCS5A01G018100 chr3B 79.612 103 17 3 329 427 12295367 12295469 1.330000e-08 71.3
31 TraesCS5A01G018100 chr3B 80.460 87 13 3 345 427 12145401 12145315 2.230000e-06 63.9
32 TraesCS5A01G018100 chr5D 78.305 696 70 34 1863 2527 8265329 8265974 9.050000e-100 374.0
33 TraesCS5A01G018100 chr5D 78.166 687 70 27 1872 2527 546028446 546029083 5.450000e-97 364.0
34 TraesCS5A01G018100 chr5D 77.434 678 73 30 1879 2527 88166242 88166868 5.530000e-87 331.0
35 TraesCS5A01G018100 chr5D 87.037 162 14 5 574 730 97190532 97190373 2.740000e-40 176.0
36 TraesCS5A01G018100 chr2B 83.846 390 48 9 2290 2674 577431348 577430969 9.120000e-95 357.0
37 TraesCS5A01G018100 chr2B 88.400 250 27 2 2425 2673 563933146 563932898 1.560000e-77 300.0
38 TraesCS5A01G018100 chr2B 84.868 152 19 3 574 721 736242312 736242463 1.660000e-32 150.0
39 TraesCS5A01G018100 chr6B 87.814 279 30 4 2400 2675 15817262 15817539 9.250000e-85 324.0
40 TraesCS5A01G018100 chr1B 87.410 278 32 3 2400 2675 505115882 505116158 1.550000e-82 316.0
41 TraesCS5A01G018100 chr6D 85.211 142 20 1 593 733 461485224 461485083 7.730000e-31 145.0
42 TraesCS5A01G018100 chr7B 82.530 166 25 3 572 733 695503345 695503180 2.780000e-30 143.0
43 TraesCS5A01G018100 chrUn 77.670 103 19 3 329 427 35269678 35269780 2.880000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G018100 chr5A 14253486 14256163 2677 True 1701.133333 4946 97.278667 1 2678 3 chr5A.!!$R1 2677
1 TraesCS5A01G018100 chr5A 14416682 14417359 677 False 540.000000 540 81.140000 1000 1679 1 chr5A.!!$F1 679
2 TraesCS5A01G018100 chr5B 15191098 15192852 1754 True 716.000000 1402 87.729000 31 1871 3 chr5B.!!$R1 1840
3 TraesCS5A01G018100 chr5B 15094138 15094695 557 False 665.000000 665 88.142000 1158 1722 1 chr5B.!!$F2 564
4 TraesCS5A01G018100 chr5B 15075229 15075934 705 False 619.000000 619 83.287000 1185 1868 1 chr5B.!!$F1 683
5 TraesCS5A01G018100 chr5B 15197073 15197751 678 False 592.000000 592 82.507000 998 1679 1 chr5B.!!$F4 681
6 TraesCS5A01G018100 chr5B 15050468 15051518 1050 False 524.200000 990 89.754500 794 1868 2 chr5B.!!$F6 1074
7 TraesCS5A01G018100 chr5B 15128103 15128788 685 False 499.000000 499 80.775000 1159 1847 1 chr5B.!!$F3 688
8 TraesCS5A01G018100 chr5B 15013739 15015890 2151 False 405.000000 1040 89.375000 28 1871 5 chr5B.!!$F5 1843
9 TraesCS5A01G018100 chr2D 639149970 639150807 837 True 911.000000 911 86.905000 1871 2678 1 chr2D.!!$R2 807
10 TraesCS5A01G018100 chr7D 636796421 636797105 684 True 784.000000 784 87.936000 1871 2532 1 chr7D.!!$R1 661
11 TraesCS5A01G018100 chr4D 487231845 487232641 796 False 761.000000 761 84.390000 1878 2672 1 chr4D.!!$F1 794
12 TraesCS5A01G018100 chr2A 486467099 486467851 752 True 673.000000 673 83.572000 1878 2609 1 chr2A.!!$R2 731
13 TraesCS5A01G018100 chr2A 676994556 676995324 768 True 540.000000 540 80.206000 1939 2678 1 chr2A.!!$R3 739
14 TraesCS5A01G018100 chr1D 479765788 479766519 731 True 627.000000 627 82.740000 1878 2609 1 chr1D.!!$R1 731
15 TraesCS5A01G018100 chr4B 634731268 634731998 730 False 569.000000 569 81.472000 1878 2609 1 chr4B.!!$F1 731
16 TraesCS5A01G018100 chr5D 8265329 8265974 645 False 374.000000 374 78.305000 1863 2527 1 chr5D.!!$F1 664
17 TraesCS5A01G018100 chr5D 546028446 546029083 637 False 364.000000 364 78.166000 1872 2527 1 chr5D.!!$F3 655
18 TraesCS5A01G018100 chr5D 88166242 88166868 626 False 331.000000 331 77.434000 1879 2527 1 chr5D.!!$F2 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 978 0.030638 TTTTGAGCAGCGCTGGAAAC 59.969 50.0 36.47 20.88 39.88 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2697 0.185901 AACTCTCCCCTTTGCAGCAA 59.814 50.0 2.83 2.83 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.646715 TTGGGCCCCTCAGTTCCG 61.647 66.667 22.27 0.00 0.00 4.30
20 21 4.097361 GGCCCCTCAGTTCCGGAC 62.097 72.222 1.83 0.00 0.00 4.79
21 22 4.097361 GCCCCTCAGTTCCGGACC 62.097 72.222 1.83 0.00 0.00 4.46
22 23 2.284699 CCCCTCAGTTCCGGACCT 60.285 66.667 1.83 0.00 0.00 3.85
23 24 2.359967 CCCCTCAGTTCCGGACCTC 61.360 68.421 1.83 0.00 0.00 3.85
24 25 1.609501 CCCTCAGTTCCGGACCTCA 60.610 63.158 1.83 0.00 0.00 3.86
25 26 0.978146 CCCTCAGTTCCGGACCTCAT 60.978 60.000 1.83 0.00 0.00 2.90
26 27 0.905357 CCTCAGTTCCGGACCTCATT 59.095 55.000 1.83 0.00 0.00 2.57
27 28 1.406069 CCTCAGTTCCGGACCTCATTG 60.406 57.143 1.83 0.00 0.00 2.82
28 29 1.550524 CTCAGTTCCGGACCTCATTGA 59.449 52.381 1.83 0.58 0.00 2.57
29 30 1.974957 TCAGTTCCGGACCTCATTGAA 59.025 47.619 1.83 0.00 0.00 2.69
72 73 6.292865 CCATGTCGAATGTAATAATTGCGAGT 60.293 38.462 0.00 0.00 0.00 4.18
135 136 0.445436 CCTGAGCTTGTTGATGTCGC 59.555 55.000 0.00 0.00 0.00 5.19
137 138 1.225854 GAGCTTGTTGATGTCGCGC 60.226 57.895 0.00 0.00 0.00 6.86
138 139 2.571611 GCTTGTTGATGTCGCGCG 60.572 61.111 26.76 26.76 0.00 6.86
139 140 2.096406 CTTGTTGATGTCGCGCGG 59.904 61.111 31.69 11.75 0.00 6.46
140 141 2.663520 TTGTTGATGTCGCGCGGT 60.664 55.556 31.69 16.64 0.00 5.68
141 142 2.548587 CTTGTTGATGTCGCGCGGTC 62.549 60.000 31.69 24.09 0.00 4.79
163 189 0.323957 ACCTAGACCGCCTTTGTTCC 59.676 55.000 0.00 0.00 0.00 3.62
164 190 0.613777 CCTAGACCGCCTTTGTTCCT 59.386 55.000 0.00 0.00 0.00 3.36
165 191 1.676014 CCTAGACCGCCTTTGTTCCTG 60.676 57.143 0.00 0.00 0.00 3.86
181 207 6.911250 TGTTCCTGTGTACTCATCTCTTAA 57.089 37.500 0.00 0.00 0.00 1.85
210 236 9.847224 AATATGGAAATGATAAGTACCGAAGTT 57.153 29.630 0.00 0.00 0.00 2.66
211 237 7.787725 ATGGAAATGATAAGTACCGAAGTTC 57.212 36.000 0.00 0.00 0.00 3.01
212 238 5.808540 TGGAAATGATAAGTACCGAAGTTCG 59.191 40.000 18.40 18.40 40.07 3.95
222 248 3.748021 CGAAGTTCGGCTTTTGACC 57.252 52.632 17.61 0.00 37.59 4.02
223 249 0.941542 CGAAGTTCGGCTTTTGACCA 59.058 50.000 17.61 0.00 37.59 4.02
224 250 1.535462 CGAAGTTCGGCTTTTGACCAT 59.465 47.619 17.61 0.00 37.59 3.55
225 251 2.665519 CGAAGTTCGGCTTTTGACCATG 60.666 50.000 17.61 0.00 37.59 3.66
226 252 1.247567 AGTTCGGCTTTTGACCATGG 58.752 50.000 11.19 11.19 0.00 3.66
227 253 0.388520 GTTCGGCTTTTGACCATGGC 60.389 55.000 13.04 5.35 0.00 4.40
228 254 1.531739 TTCGGCTTTTGACCATGGCC 61.532 55.000 13.04 0.00 39.43 5.36
229 255 2.274645 CGGCTTTTGACCATGGCCA 61.275 57.895 13.04 8.56 42.56 5.36
230 256 1.814772 CGGCTTTTGACCATGGCCAA 61.815 55.000 10.96 11.28 42.56 4.52
231 257 0.614812 GGCTTTTGACCATGGCCAAT 59.385 50.000 14.76 0.00 42.08 3.16
232 258 1.405933 GGCTTTTGACCATGGCCAATC 60.406 52.381 14.76 8.97 42.08 2.67
233 259 1.736696 GCTTTTGACCATGGCCAATCG 60.737 52.381 14.76 9.51 0.00 3.34
234 260 1.818060 CTTTTGACCATGGCCAATCGA 59.182 47.619 14.76 5.06 0.00 3.59
235 261 1.916506 TTTGACCATGGCCAATCGAA 58.083 45.000 14.76 11.50 0.00 3.71
236 262 2.142356 TTGACCATGGCCAATCGAAT 57.858 45.000 10.96 0.00 0.00 3.34
237 263 1.391577 TGACCATGGCCAATCGAATG 58.608 50.000 10.96 1.10 0.00 2.67
238 264 1.340893 TGACCATGGCCAATCGAATGT 60.341 47.619 10.96 0.00 0.00 2.71
239 265 1.750778 GACCATGGCCAATCGAATGTT 59.249 47.619 10.96 0.00 0.00 2.71
240 266 2.166254 GACCATGGCCAATCGAATGTTT 59.834 45.455 10.96 0.00 0.00 2.83
241 267 2.566724 ACCATGGCCAATCGAATGTTTT 59.433 40.909 10.96 0.00 0.00 2.43
242 268 3.007831 ACCATGGCCAATCGAATGTTTTT 59.992 39.130 10.96 0.00 0.00 1.94
243 269 4.221703 ACCATGGCCAATCGAATGTTTTTA 59.778 37.500 10.96 0.00 0.00 1.52
244 270 5.174395 CCATGGCCAATCGAATGTTTTTAA 58.826 37.500 10.96 0.00 0.00 1.52
245 271 5.816777 CCATGGCCAATCGAATGTTTTTAAT 59.183 36.000 10.96 0.00 0.00 1.40
246 272 6.238157 CCATGGCCAATCGAATGTTTTTAATG 60.238 38.462 10.96 0.00 0.00 1.90
247 273 5.174395 TGGCCAATCGAATGTTTTTAATGG 58.826 37.500 0.61 0.00 0.00 3.16
248 274 5.142635 GCCAATCGAATGTTTTTAATGGC 57.857 39.130 0.00 0.00 43.31 4.40
250 276 6.718454 CCAATCGAATGTTTTTAATGGCAA 57.282 33.333 0.00 0.00 0.00 4.52
251 277 6.533185 CCAATCGAATGTTTTTAATGGCAAC 58.467 36.000 0.00 0.00 0.00 4.17
252 278 6.368516 CCAATCGAATGTTTTTAATGGCAACT 59.631 34.615 0.00 0.00 37.61 3.16
256 282 8.873215 TCGAATGTTTTTAATGGCAACTTTAA 57.127 26.923 0.00 0.00 42.47 1.52
263 289 9.051679 GTTTTTAATGGCAACTTTAATTGACCT 57.948 29.630 0.00 0.00 43.29 3.85
265 291 5.806654 AATGGCAACTTTAATTGACCTGT 57.193 34.783 0.00 0.00 36.71 4.00
276 302 0.251297 TTGACCTGTGGATGGCAAGG 60.251 55.000 0.59 0.59 0.00 3.61
336 785 8.494016 AATAAACTAAGACAGACTTACCATGC 57.506 34.615 0.00 0.00 39.72 4.06
337 786 4.473477 ACTAAGACAGACTTACCATGCC 57.527 45.455 0.00 0.00 39.72 4.40
349 798 4.760204 ACTTACCATGCCTGTCAACTAAAC 59.240 41.667 0.00 0.00 0.00 2.01
455 905 7.952101 CGTCAATATTAATACGATGAGGCAAAG 59.048 37.037 10.15 0.00 37.53 2.77
520 970 5.844301 AACCATTTTAATTTTGAGCAGCG 57.156 34.783 0.00 0.00 0.00 5.18
528 978 0.030638 TTTTGAGCAGCGCTGGAAAC 59.969 50.000 36.47 20.88 39.88 2.78
532 982 1.639298 GAGCAGCGCTGGAAACGAAT 61.639 55.000 36.47 6.13 39.88 3.34
534 984 1.911293 GCAGCGCTGGAAACGAATGA 61.911 55.000 36.47 0.00 0.00 2.57
542 992 3.365969 GCTGGAAACGAATGAAAACCGAT 60.366 43.478 0.00 0.00 0.00 4.18
548 998 6.403855 GGAAACGAATGAAAACCGATAATCCA 60.404 38.462 0.00 0.00 0.00 3.41
551 1001 7.095695 ACGAATGAAAACCGATAATCCATTT 57.904 32.000 0.00 0.00 0.00 2.32
558 1008 9.906660 TGAAAACCGATAATCCATTTAATATGC 57.093 29.630 0.00 0.00 0.00 3.14
568 1018 3.554752 CCATTTAATATGCCCGGCCTTTG 60.555 47.826 7.03 0.00 0.00 2.77
569 1019 1.036707 TTAATATGCCCGGCCTTTGC 58.963 50.000 7.03 0.35 0.00 3.68
579 1029 2.098831 GGCCTTTGCGTCGTACTCC 61.099 63.158 0.00 0.00 38.85 3.85
580 1030 1.080025 GCCTTTGCGTCGTACTCCT 60.080 57.895 0.00 0.00 0.00 3.69
582 1032 1.347320 CCTTTGCGTCGTACTCCTTC 58.653 55.000 0.00 0.00 0.00 3.46
583 1033 1.347320 CTTTGCGTCGTACTCCTTCC 58.653 55.000 0.00 0.00 0.00 3.46
588 1038 0.519999 CGTCGTACTCCTTCCGTTCG 60.520 60.000 0.00 0.00 0.00 3.95
595 1047 5.296780 TCGTACTCCTTCCGTTCGTAAATAT 59.703 40.000 0.00 0.00 0.00 1.28
632 1086 6.778834 TTTGACTATGGACTACATACGGAA 57.221 37.500 0.00 0.00 41.03 4.30
639 1093 8.698210 ACTATGGACTACATACGGAACAAAATA 58.302 33.333 0.00 0.00 41.03 1.40
646 1100 8.715088 ACTACATACGGAACAAAATAAGTGAAC 58.285 33.333 0.00 0.00 0.00 3.18
650 1104 8.889717 CATACGGAACAAAATAAGTGAACCTAT 58.110 33.333 0.00 0.00 0.00 2.57
700 1154 7.611467 TCTGTATGCAGTTTGTATTGAAATCCT 59.389 33.333 10.80 0.00 43.05 3.24
701 1155 8.800370 TGTATGCAGTTTGTATTGAAATCCTA 57.200 30.769 0.00 0.00 0.00 2.94
751 1205 6.584942 GTGAATACGTATTAATCGCCTGATGA 59.415 38.462 20.37 0.00 34.24 2.92
808 1262 9.823647 AAATGAGTGCTTATATATATTCGGAGG 57.176 33.333 0.00 0.00 0.00 4.30
809 1263 7.956328 TGAGTGCTTATATATATTCGGAGGT 57.044 36.000 0.00 0.00 0.00 3.85
810 1264 7.772166 TGAGTGCTTATATATATTCGGAGGTG 58.228 38.462 0.00 0.00 0.00 4.00
811 1265 7.113658 AGTGCTTATATATATTCGGAGGTGG 57.886 40.000 0.00 0.00 0.00 4.61
812 1266 5.753921 GTGCTTATATATATTCGGAGGTGGC 59.246 44.000 0.00 0.00 0.00 5.01
813 1267 5.661312 TGCTTATATATATTCGGAGGTGGCT 59.339 40.000 0.00 0.00 0.00 4.75
814 1268 6.183360 TGCTTATATATATTCGGAGGTGGCTC 60.183 42.308 0.00 0.00 0.00 4.70
815 1269 6.183360 GCTTATATATATTCGGAGGTGGCTCA 60.183 42.308 0.00 0.00 0.00 4.26
816 1270 7.472100 GCTTATATATATTCGGAGGTGGCTCAT 60.472 40.741 0.00 0.00 0.00 2.90
817 1271 6.814954 ATATATATTCGGAGGTGGCTCATT 57.185 37.500 0.00 0.00 0.00 2.57
818 1272 7.914427 ATATATATTCGGAGGTGGCTCATTA 57.086 36.000 0.00 0.00 0.00 1.90
819 1273 4.974645 ATATTCGGAGGTGGCTCATTAA 57.025 40.909 0.00 0.00 0.00 1.40
820 1274 2.691409 TTCGGAGGTGGCTCATTAAG 57.309 50.000 0.00 0.00 0.00 1.85
821 1275 1.860641 TCGGAGGTGGCTCATTAAGA 58.139 50.000 0.00 0.00 0.00 2.10
822 1276 2.398588 TCGGAGGTGGCTCATTAAGAT 58.601 47.619 0.00 0.00 0.00 2.40
823 1277 2.365617 TCGGAGGTGGCTCATTAAGATC 59.634 50.000 0.00 0.00 0.00 2.75
824 1278 2.103094 CGGAGGTGGCTCATTAAGATCA 59.897 50.000 0.00 0.00 0.00 2.92
825 1279 3.244353 CGGAGGTGGCTCATTAAGATCAT 60.244 47.826 0.00 0.00 0.00 2.45
826 1280 4.021104 CGGAGGTGGCTCATTAAGATCATA 60.021 45.833 0.00 0.00 0.00 2.15
827 1281 5.337894 CGGAGGTGGCTCATTAAGATCATAT 60.338 44.000 0.00 0.00 0.00 1.78
828 1282 6.127338 CGGAGGTGGCTCATTAAGATCATATA 60.127 42.308 0.00 0.00 0.00 0.86
829 1283 7.579531 CGGAGGTGGCTCATTAAGATCATATAA 60.580 40.741 0.00 0.00 0.00 0.98
830 1284 8.103305 GGAGGTGGCTCATTAAGATCATATAAA 58.897 37.037 0.00 0.00 0.00 1.40
831 1285 9.678260 GAGGTGGCTCATTAAGATCATATAAAT 57.322 33.333 0.00 0.00 0.00 1.40
832 1286 9.458727 AGGTGGCTCATTAAGATCATATAAATG 57.541 33.333 0.00 0.00 0.00 2.32
833 1287 9.453572 GGTGGCTCATTAAGATCATATAAATGA 57.546 33.333 0.00 2.32 46.01 2.57
852 1306 9.823647 ATAAATGAGTGCTTATATATTCGGAGG 57.176 33.333 0.00 0.00 0.00 4.30
853 1307 6.859112 ATGAGTGCTTATATATTCGGAGGT 57.141 37.500 0.00 0.00 0.00 3.85
859 1313 9.251440 AGTGCTTATATATTCGGAGGTGTATAA 57.749 33.333 0.00 0.00 0.00 0.98
869 1323 6.479972 TCGGAGGTGTATAAAATCTGACAT 57.520 37.500 0.00 0.00 0.00 3.06
1056 1519 3.204827 GCAATCGCTGCCACCGAT 61.205 61.111 0.00 0.00 46.13 4.18
1104 1567 4.404098 CCCTACACGGTGTGGCCC 62.404 72.222 23.36 0.00 37.94 5.80
1200 1663 3.464494 GCTGGCAGGATTTGGGGC 61.464 66.667 17.64 0.00 0.00 5.80
1314 1777 3.138798 ACCACGCTCGCCGAGTAT 61.139 61.111 16.50 0.86 41.02 2.12
1453 1917 1.445926 ATCAACGCAAAATGCCCGC 60.446 52.632 0.00 0.00 41.12 6.13
1455 1919 3.610669 AACGCAAAATGCCCGCCA 61.611 55.556 0.00 0.00 41.12 5.69
1481 1945 4.459089 GGTGGACGGAGGCTGCTC 62.459 72.222 4.02 0.75 0.00 4.26
1632 2096 1.532868 GACGACAAGAGCAGCACATTT 59.467 47.619 0.00 0.00 0.00 2.32
1641 2105 1.802636 CAGCACATTTACCTGCCCG 59.197 57.895 0.00 0.00 33.57 6.13
1704 2168 5.448632 GCGATTGGGATTCAATTTACTTCGT 60.449 40.000 0.00 0.00 45.36 3.85
1705 2169 6.192360 CGATTGGGATTCAATTTACTTCGTC 58.808 40.000 0.00 0.00 45.36 4.20
1706 2170 6.183360 CGATTGGGATTCAATTTACTTCGTCA 60.183 38.462 0.00 0.00 45.36 4.35
1722 2186 7.113658 ACTTCGTCAATGGATAAGTCTGTAT 57.886 36.000 0.00 0.00 30.64 2.29
1723 2187 7.203910 ACTTCGTCAATGGATAAGTCTGTATC 58.796 38.462 0.00 0.00 30.64 2.24
1725 2189 4.917998 CGTCAATGGATAAGTCTGTATCGG 59.082 45.833 0.00 0.00 32.18 4.18
1726 2190 5.507482 CGTCAATGGATAAGTCTGTATCGGT 60.507 44.000 0.00 0.00 32.18 4.69
1728 2192 7.431249 GTCAATGGATAAGTCTGTATCGGTAA 58.569 38.462 0.00 0.00 32.18 2.85
1729 2193 8.088981 GTCAATGGATAAGTCTGTATCGGTAAT 58.911 37.037 0.00 0.00 32.18 1.89
1731 2195 6.971726 TGGATAAGTCTGTATCGGTAATGT 57.028 37.500 0.00 0.00 32.18 2.71
1735 2227 7.974501 GGATAAGTCTGTATCGGTAATGTATGG 59.025 40.741 0.00 0.00 32.18 2.74
1737 2229 3.918591 GTCTGTATCGGTAATGTATGGCG 59.081 47.826 0.00 0.00 0.00 5.69
1753 2247 2.455557 TGGCGGATGATTCCACAAAAT 58.544 42.857 0.00 0.00 42.74 1.82
1858 2361 5.811100 GGACAAAAATACTACTCCCTTCGAG 59.189 44.000 0.00 0.00 44.95 4.04
1891 2394 2.560542 AGGAAATTGTTTATGTGCGGCA 59.439 40.909 0.00 0.00 0.00 5.69
1978 2492 4.589675 GGTCCCAACACCGCCCAA 62.590 66.667 0.00 0.00 0.00 4.12
2060 2602 1.339631 CCATGGGAACGGCAACTCTTA 60.340 52.381 2.85 0.00 0.00 2.10
2091 2653 0.821711 CCTCTCTCTACCCCGAGCTG 60.822 65.000 0.00 0.00 0.00 4.24
2111 2673 1.072015 GCAGAGGGCTATTGAGAGCAT 59.928 52.381 0.00 0.00 44.76 3.79
2133 2697 2.932234 CGCGACACCCCTTCAGAGT 61.932 63.158 0.00 0.00 0.00 3.24
2147 2711 0.538057 CAGAGTTGCTGCAAAGGGGA 60.538 55.000 17.80 0.00 37.90 4.81
2327 2916 1.830408 CCGTGTTTTTGGGGAGGCA 60.830 57.895 0.00 0.00 0.00 4.75
2404 2995 3.524606 GCTACTACCCCAGCGCGA 61.525 66.667 12.10 0.00 0.00 5.87
2448 3061 0.750850 GAGCTACAACCATAGGCCGA 59.249 55.000 0.00 0.00 0.00 5.54
2513 3126 4.365505 TTGCGATGGTCACGGCGA 62.366 61.111 16.62 0.00 0.00 5.54
2605 3224 5.453587 GCAACGATGATTCATAGTTTTGCTC 59.546 40.000 18.82 6.28 37.53 4.26
2611 3230 4.937620 TGATTCATAGTTTTGCTCGAAGCT 59.062 37.500 8.07 0.00 42.97 3.74
2641 3263 5.118286 ACTTTTGCTGGAACCATTTTCTTG 58.882 37.500 0.00 0.00 0.00 3.02
2646 3268 6.227298 TGCTGGAACCATTTTCTTGTTTTA 57.773 33.333 0.00 0.00 0.00 1.52
2675 3297 8.662141 GCAAGCATGATTTCTTTTTGTTATCAT 58.338 29.630 0.00 0.00 36.62 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.646715 CGGAACTGAGGGGCCCAA 61.647 66.667 27.72 11.99 0.00 4.12
3 4 4.097361 GTCCGGAACTGAGGGGCC 62.097 72.222 5.23 0.00 0.00 5.80
4 5 4.097361 GGTCCGGAACTGAGGGGC 62.097 72.222 13.76 0.00 0.00 5.80
5 6 2.284699 AGGTCCGGAACTGAGGGG 60.285 66.667 24.49 0.00 0.00 4.79
6 7 0.978146 ATGAGGTCCGGAACTGAGGG 60.978 60.000 30.85 0.00 0.00 4.30
7 8 0.905357 AATGAGGTCCGGAACTGAGG 59.095 55.000 30.85 0.00 0.00 3.86
8 9 1.550524 TCAATGAGGTCCGGAACTGAG 59.449 52.381 30.85 13.66 0.00 3.35
9 10 1.639722 TCAATGAGGTCCGGAACTGA 58.360 50.000 30.85 21.77 0.00 3.41
10 11 2.472695 TTCAATGAGGTCCGGAACTG 57.527 50.000 30.85 14.12 0.00 3.16
11 12 3.721087 AATTCAATGAGGTCCGGAACT 57.279 42.857 25.49 25.49 0.00 3.01
12 13 4.783764 AAAATTCAATGAGGTCCGGAAC 57.216 40.909 13.02 13.02 0.00 3.62
13 14 8.582657 TTATTAAAATTCAATGAGGTCCGGAA 57.417 30.769 5.23 0.00 0.00 4.30
14 15 7.284489 CCTTATTAAAATTCAATGAGGTCCGGA 59.716 37.037 0.00 0.00 35.47 5.14
15 16 7.068226 ACCTTATTAAAATTCAATGAGGTCCGG 59.932 37.037 17.07 0.00 44.66 5.14
16 17 7.996385 ACCTTATTAAAATTCAATGAGGTCCG 58.004 34.615 17.07 2.50 44.66 4.79
26 27 9.308000 ACATGGAAGTGACCTTATTAAAATTCA 57.692 29.630 0.00 0.00 0.00 2.57
27 28 9.788960 GACATGGAAGTGACCTTATTAAAATTC 57.211 33.333 0.00 0.00 0.00 2.17
28 29 8.458843 CGACATGGAAGTGACCTTATTAAAATT 58.541 33.333 0.00 0.00 0.00 1.82
29 30 7.827236 TCGACATGGAAGTGACCTTATTAAAAT 59.173 33.333 0.00 0.00 0.00 1.82
135 136 4.180496 GGTCTAGGTTTGACCGCG 57.820 61.111 0.00 0.00 44.90 6.46
139 140 1.804748 CAAAGGCGGTCTAGGTTTGAC 59.195 52.381 0.00 0.00 31.10 3.18
140 141 1.418637 ACAAAGGCGGTCTAGGTTTGA 59.581 47.619 0.00 0.00 33.31 2.69
141 142 1.892209 ACAAAGGCGGTCTAGGTTTG 58.108 50.000 0.00 0.00 34.85 2.93
154 180 4.899502 AGATGAGTACACAGGAACAAAGG 58.100 43.478 0.00 0.00 0.00 3.11
188 214 5.808540 CGAACTTCGGTACTTATCATTTCCA 59.191 40.000 3.06 0.00 36.00 3.53
204 230 0.941542 TGGTCAAAAGCCGAACTTCG 59.058 50.000 4.07 4.07 37.75 3.79
205 231 2.351738 CCATGGTCAAAAGCCGAACTTC 60.352 50.000 2.57 0.00 37.75 3.01
206 232 1.613437 CCATGGTCAAAAGCCGAACTT 59.387 47.619 2.57 0.00 41.70 2.66
207 233 1.247567 CCATGGTCAAAAGCCGAACT 58.752 50.000 2.57 0.00 0.00 3.01
208 234 0.388520 GCCATGGTCAAAAGCCGAAC 60.389 55.000 14.67 0.00 0.00 3.95
209 235 1.531739 GGCCATGGTCAAAAGCCGAA 61.532 55.000 12.68 0.00 33.18 4.30
210 236 1.976474 GGCCATGGTCAAAAGCCGA 60.976 57.895 12.68 0.00 33.18 5.54
211 237 1.814772 TTGGCCATGGTCAAAAGCCG 61.815 55.000 29.23 0.00 46.92 5.52
212 238 0.614812 ATTGGCCATGGTCAAAAGCC 59.385 50.000 34.01 17.15 43.25 4.35
213 239 1.736696 CGATTGGCCATGGTCAAAAGC 60.737 52.381 34.01 23.61 43.25 3.51
214 240 1.818060 TCGATTGGCCATGGTCAAAAG 59.182 47.619 34.01 27.88 43.25 2.27
215 241 1.916506 TCGATTGGCCATGGTCAAAA 58.083 45.000 34.01 19.93 43.25 2.44
216 242 1.916506 TTCGATTGGCCATGGTCAAA 58.083 45.000 34.01 16.68 43.25 2.69
217 243 1.750206 CATTCGATTGGCCATGGTCAA 59.250 47.619 32.71 32.71 44.19 3.18
218 244 1.340893 ACATTCGATTGGCCATGGTCA 60.341 47.619 17.02 17.02 0.00 4.02
219 245 1.392589 ACATTCGATTGGCCATGGTC 58.607 50.000 10.20 10.20 0.00 4.02
220 246 1.851304 AACATTCGATTGGCCATGGT 58.149 45.000 14.67 0.00 0.00 3.55
221 247 2.965572 AAACATTCGATTGGCCATGG 57.034 45.000 6.09 7.63 0.00 3.66
222 248 6.238157 CCATTAAAAACATTCGATTGGCCATG 60.238 38.462 6.09 2.50 0.00 3.66
223 249 5.816777 CCATTAAAAACATTCGATTGGCCAT 59.183 36.000 6.09 0.00 0.00 4.40
224 250 5.174395 CCATTAAAAACATTCGATTGGCCA 58.826 37.500 0.00 0.00 0.00 5.36
225 251 4.033932 GCCATTAAAAACATTCGATTGGCC 59.966 41.667 11.67 0.00 40.90 5.36
226 252 4.629200 TGCCATTAAAAACATTCGATTGGC 59.371 37.500 11.67 0.00 45.63 4.52
227 253 6.368516 AGTTGCCATTAAAAACATTCGATTGG 59.631 34.615 11.67 0.00 0.00 3.16
228 254 7.350110 AGTTGCCATTAAAAACATTCGATTG 57.650 32.000 5.78 5.78 0.00 2.67
229 255 7.961325 AAGTTGCCATTAAAAACATTCGATT 57.039 28.000 0.00 0.00 0.00 3.34
230 256 7.961325 AAAGTTGCCATTAAAAACATTCGAT 57.039 28.000 0.00 0.00 0.00 3.59
231 257 8.873215 TTAAAGTTGCCATTAAAAACATTCGA 57.127 26.923 0.00 0.00 0.00 3.71
236 262 8.831550 GGTCAATTAAAGTTGCCATTAAAAACA 58.168 29.630 0.00 0.00 0.00 2.83
237 263 9.051679 AGGTCAATTAAAGTTGCCATTAAAAAC 57.948 29.630 0.00 0.00 31.77 2.43
238 264 9.050601 CAGGTCAATTAAAGTTGCCATTAAAAA 57.949 29.630 0.00 0.00 31.77 1.94
239 265 8.207545 ACAGGTCAATTAAAGTTGCCATTAAAA 58.792 29.630 0.00 0.00 31.77 1.52
240 266 7.655328 CACAGGTCAATTAAAGTTGCCATTAAA 59.345 33.333 0.00 0.00 31.77 1.52
241 267 7.151308 CACAGGTCAATTAAAGTTGCCATTAA 58.849 34.615 0.00 0.00 31.77 1.40
242 268 6.295011 CCACAGGTCAATTAAAGTTGCCATTA 60.295 38.462 0.00 0.00 31.77 1.90
243 269 5.511202 CCACAGGTCAATTAAAGTTGCCATT 60.511 40.000 0.00 0.00 31.77 3.16
244 270 4.021192 CCACAGGTCAATTAAAGTTGCCAT 60.021 41.667 0.00 0.00 31.77 4.40
245 271 3.320541 CCACAGGTCAATTAAAGTTGCCA 59.679 43.478 0.00 0.00 31.77 4.92
246 272 3.572255 TCCACAGGTCAATTAAAGTTGCC 59.428 43.478 0.00 0.00 0.00 4.52
247 273 4.846779 TCCACAGGTCAATTAAAGTTGC 57.153 40.909 0.00 0.00 0.00 4.17
248 274 5.713025 CCATCCACAGGTCAATTAAAGTTG 58.287 41.667 0.00 0.00 0.00 3.16
249 275 4.220602 GCCATCCACAGGTCAATTAAAGTT 59.779 41.667 0.00 0.00 0.00 2.66
250 276 3.763897 GCCATCCACAGGTCAATTAAAGT 59.236 43.478 0.00 0.00 0.00 2.66
251 277 3.763360 TGCCATCCACAGGTCAATTAAAG 59.237 43.478 0.00 0.00 0.00 1.85
252 278 3.772387 TGCCATCCACAGGTCAATTAAA 58.228 40.909 0.00 0.00 0.00 1.52
256 282 1.617804 CCTTGCCATCCACAGGTCAAT 60.618 52.381 0.00 0.00 0.00 2.57
263 289 2.890311 CAACTAAACCTTGCCATCCACA 59.110 45.455 0.00 0.00 0.00 4.17
265 291 2.158385 ACCAACTAAACCTTGCCATCCA 60.158 45.455 0.00 0.00 0.00 3.41
276 302 2.419667 TGCCGAGCTTACCAACTAAAC 58.580 47.619 0.00 0.00 0.00 2.01
332 781 4.275689 TGACAAGTTTAGTTGACAGGCATG 59.724 41.667 0.00 0.00 30.31 4.06
349 798 0.778815 GTTGACGCGAGACTGACAAG 59.221 55.000 15.93 0.00 0.00 3.16
388 837 7.871973 TGTTCAGATTTTGACCATGTAAATTGG 59.128 33.333 0.00 0.00 40.26 3.16
389 838 8.815141 TGTTCAGATTTTGACCATGTAAATTG 57.185 30.769 0.00 0.00 34.94 2.32
391 840 9.643693 GAATGTTCAGATTTTGACCATGTAAAT 57.356 29.630 0.00 0.00 37.90 1.40
407 857 4.982295 CGCCGATAAGTATGAATGTTCAGA 59.018 41.667 1.65 0.00 41.08 3.27
409 859 4.689071 ACGCCGATAAGTATGAATGTTCA 58.311 39.130 0.00 0.00 42.14 3.18
414 864 9.647797 TTAATATTGACGCCGATAAGTATGAAT 57.352 29.630 0.00 0.00 0.00 2.57
419 869 8.450180 TCGTATTAATATTGACGCCGATAAGTA 58.550 33.333 12.10 0.00 35.33 2.24
455 905 7.546778 TTGTTTGAAATTAAGGAGGCAAAAC 57.453 32.000 0.00 0.00 0.00 2.43
487 937 8.513774 CAAAATTAAAATGGTTAGCCTTGCAAT 58.486 29.630 0.00 0.00 35.27 3.56
493 943 7.003402 TGCTCAAAATTAAAATGGTTAGCCT 57.997 32.000 0.00 0.00 35.27 4.58
520 970 2.031508 TCGGTTTTCATTCGTTTCCAGC 60.032 45.455 0.00 0.00 0.00 4.85
528 978 9.677567 ATTAAATGGATTATCGGTTTTCATTCG 57.322 29.630 0.00 0.00 0.00 3.34
532 982 9.906660 GCATATTAAATGGATTATCGGTTTTCA 57.093 29.630 0.28 0.00 0.00 2.69
534 984 8.311109 GGGCATATTAAATGGATTATCGGTTTT 58.689 33.333 0.00 0.00 0.00 2.43
542 992 4.020543 GGCCGGGCATATTAAATGGATTA 58.979 43.478 25.33 0.00 0.00 1.75
548 998 2.037121 GCAAAGGCCGGGCATATTAAAT 59.963 45.455 31.59 3.02 0.00 1.40
551 1001 1.169661 CGCAAAGGCCGGGCATATTA 61.170 55.000 31.59 0.00 36.38 0.98
558 1008 4.745751 TACGACGCAAAGGCCGGG 62.746 66.667 2.18 0.00 36.38 5.73
568 1018 0.796113 GAACGGAAGGAGTACGACGC 60.796 60.000 0.00 0.00 0.00 5.19
569 1019 0.519999 CGAACGGAAGGAGTACGACG 60.520 60.000 0.00 0.00 0.00 5.12
579 1029 9.685005 CTAAAAAGACATATTTACGAACGGAAG 57.315 33.333 0.00 0.00 0.00 3.46
580 1030 9.421806 TCTAAAAAGACATATTTACGAACGGAA 57.578 29.630 0.00 0.00 0.00 4.30
582 1032 9.079833 TCTCTAAAAAGACATATTTACGAACGG 57.920 33.333 0.00 0.00 0.00 4.44
595 1047 9.436957 GTCCATAGTCAAATCTCTAAAAAGACA 57.563 33.333 0.00 0.00 0.00 3.41
609 1061 6.153170 TGTTCCGTATGTAGTCCATAGTCAAA 59.847 38.462 0.00 0.00 36.71 2.69
612 1064 5.762825 TGTTCCGTATGTAGTCCATAGTC 57.237 43.478 0.00 0.00 36.71 2.59
617 1071 7.332430 CACTTATTTTGTTCCGTATGTAGTCCA 59.668 37.037 0.00 0.00 0.00 4.02
676 1130 7.701539 AGGATTTCAATACAAACTGCATACA 57.298 32.000 0.00 0.00 0.00 2.29
723 1177 6.016527 TCAGGCGATTAATACGTATTCACTCT 60.017 38.462 23.51 12.03 0.00 3.24
727 1181 6.683715 TCATCAGGCGATTAATACGTATTCA 58.316 36.000 23.51 14.05 0.00 2.57
730 1184 7.358931 CGTTTTCATCAGGCGATTAATACGTAT 60.359 37.037 1.14 1.14 36.39 3.06
826 1280 9.823647 CCTCCGAATATATAAGCACTCATTTAT 57.176 33.333 0.00 0.00 0.00 1.40
827 1281 8.812972 ACCTCCGAATATATAAGCACTCATTTA 58.187 33.333 0.00 0.00 0.00 1.40
828 1282 7.604164 CACCTCCGAATATATAAGCACTCATTT 59.396 37.037 0.00 0.00 0.00 2.32
829 1283 7.099764 CACCTCCGAATATATAAGCACTCATT 58.900 38.462 0.00 0.00 0.00 2.57
830 1284 6.211584 ACACCTCCGAATATATAAGCACTCAT 59.788 38.462 0.00 0.00 0.00 2.90
831 1285 5.538813 ACACCTCCGAATATATAAGCACTCA 59.461 40.000 0.00 0.00 0.00 3.41
832 1286 6.026947 ACACCTCCGAATATATAAGCACTC 57.973 41.667 0.00 0.00 0.00 3.51
833 1287 7.719871 ATACACCTCCGAATATATAAGCACT 57.280 36.000 0.00 0.00 0.00 4.40
834 1288 9.865321 TTTATACACCTCCGAATATATAAGCAC 57.135 33.333 0.00 0.00 0.00 4.40
842 1296 8.647796 TGTCAGATTTTATACACCTCCGAATAT 58.352 33.333 0.00 0.00 0.00 1.28
843 1297 8.014070 TGTCAGATTTTATACACCTCCGAATA 57.986 34.615 0.00 0.00 0.00 1.75
844 1298 6.884832 TGTCAGATTTTATACACCTCCGAAT 58.115 36.000 0.00 0.00 0.00 3.34
845 1299 6.288941 TGTCAGATTTTATACACCTCCGAA 57.711 37.500 0.00 0.00 0.00 4.30
846 1300 5.925506 TGTCAGATTTTATACACCTCCGA 57.074 39.130 0.00 0.00 0.00 4.55
847 1301 8.307483 AGATATGTCAGATTTTATACACCTCCG 58.693 37.037 0.00 0.00 0.00 4.63
893 1347 5.435686 TCTGTGTAAATGTGCCCTCTTAT 57.564 39.130 0.00 0.00 0.00 1.73
941 1395 0.779997 AAAACCTGGGATGCTCCTGT 59.220 50.000 0.00 0.00 36.57 4.00
954 1408 5.256474 CCTGTAGTGAATGATGGAAAACCT 58.744 41.667 0.00 0.00 0.00 3.50
958 1412 4.299586 TGCCTGTAGTGAATGATGGAAA 57.700 40.909 0.00 0.00 0.00 3.13
959 1413 3.998913 TGCCTGTAGTGAATGATGGAA 57.001 42.857 0.00 0.00 0.00 3.53
1056 1519 0.679505 GTAGGTGGACAGTGACAGCA 59.320 55.000 18.65 6.99 37.55 4.41
1143 1606 2.769652 GAATGGCTGCCACCTGACCA 62.770 60.000 25.99 0.00 35.80 4.02
1297 1760 1.820906 TATACTCGGCGAGCGTGGT 60.821 57.895 34.76 19.37 32.04 4.16
1446 1910 3.694058 CTTCAGCTCTGGCGGGCAT 62.694 63.158 4.16 0.00 44.37 4.40
1453 1917 1.079543 CGTCCACCTTCAGCTCTGG 60.080 63.158 0.00 0.00 0.00 3.86
1455 1919 1.228894 TCCGTCCACCTTCAGCTCT 60.229 57.895 0.00 0.00 0.00 4.09
1480 1944 1.758440 AACTTGAGGCAGGCACTCGA 61.758 55.000 0.00 0.00 34.60 4.04
1481 1945 1.294659 GAACTTGAGGCAGGCACTCG 61.295 60.000 0.00 0.00 34.60 4.18
1492 1956 1.966451 GTGGGGTGCCGAACTTGAG 60.966 63.158 0.00 0.00 0.00 3.02
1641 2105 2.099427 GAGTTGGTAGTCTGATCCGACC 59.901 54.545 13.06 3.59 36.57 4.79
1704 2168 7.591421 TTACCGATACAGACTTATCCATTGA 57.409 36.000 0.00 0.00 0.00 2.57
1705 2169 7.872993 ACATTACCGATACAGACTTATCCATTG 59.127 37.037 0.00 0.00 0.00 2.82
1706 2170 7.963532 ACATTACCGATACAGACTTATCCATT 58.036 34.615 0.00 0.00 0.00 3.16
1722 2186 1.964933 TCATCCGCCATACATTACCGA 59.035 47.619 0.00 0.00 0.00 4.69
1723 2187 2.448926 TCATCCGCCATACATTACCG 57.551 50.000 0.00 0.00 0.00 4.02
1725 2189 4.946784 GGAATCATCCGCCATACATTAC 57.053 45.455 0.00 0.00 35.59 1.89
1737 2229 8.055279 TCAGTAGAAATTTTGTGGAATCATCC 57.945 34.615 0.00 0.00 46.76 3.51
1978 2492 2.557901 GGAGATAAGGATAGGAGGGCGT 60.558 54.545 0.00 0.00 0.00 5.68
2054 2591 5.193728 AGAGAGGAAGGAGATGAGTAAGAGT 59.806 44.000 0.00 0.00 0.00 3.24
2060 2602 4.141251 GGTAGAGAGAGGAAGGAGATGAGT 60.141 50.000 0.00 0.00 0.00 3.41
2091 2653 0.467384 TGCTCTCAATAGCCCTCTGC 59.533 55.000 0.00 0.00 42.05 4.26
2122 2684 0.538057 TTGCAGCAACTCTGAAGGGG 60.538 55.000 2.83 0.00 45.72 4.79
2133 2697 0.185901 AACTCTCCCCTTTGCAGCAA 59.814 50.000 2.83 2.83 0.00 3.91
2147 2711 2.009042 GCATTCAGGCTACGCAACTCT 61.009 52.381 0.00 0.00 0.00 3.24
2161 2725 1.441738 CATGGTGACGAGTGCATTCA 58.558 50.000 10.08 0.00 0.00 2.57
2163 2727 0.677731 CCCATGGTGACGAGTGCATT 60.678 55.000 11.73 0.00 0.00 3.56
2327 2916 1.676014 GCTCACTTGTAGCCCATCGTT 60.676 52.381 0.00 0.00 33.73 3.85
2575 3192 1.031571 TGAATCATCGTTGCTGGGGC 61.032 55.000 0.00 0.00 39.26 5.80
2605 3224 4.377431 CCAGCAAAAGTACTTACAGCTTCG 60.377 45.833 20.34 13.27 0.00 3.79
2611 3230 4.783055 TGGTTCCAGCAAAAGTACTTACA 58.217 39.130 8.92 0.00 0.00 2.41
2641 3263 9.667989 AAAAAGAAATCATGCTTGCAATAAAAC 57.332 25.926 0.00 0.00 0.00 2.43
2646 3268 6.870971 ACAAAAAGAAATCATGCTTGCAAT 57.129 29.167 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.