Multiple sequence alignment - TraesCS5A01G017800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G017800 chr5A 100.000 2549 0 0 1 2549 14187348 14184800 0 4708
1 TraesCS5A01G017800 chr5A 96.672 1983 60 5 568 2549 91049247 91051224 0 3291
2 TraesCS5A01G017800 chr5A 96.472 1984 59 8 568 2549 90997658 90999632 0 3265
3 TraesCS5A01G017800 chr7A 96.927 1985 51 7 568 2549 150203038 150201061 0 3319
4 TraesCS5A01G017800 chr7A 96.877 1985 54 6 567 2549 689996370 689994392 0 3315
5 TraesCS5A01G017800 chr6A 96.524 1985 59 8 568 2549 200078199 200080176 0 3275
6 TraesCS5A01G017800 chr6A 96.227 1988 63 8 555 2538 617222882 617220903 0 3245
7 TraesCS5A01G017800 chr4A 96.470 1983 62 5 568 2549 626934246 626932271 0 3267
8 TraesCS5A01G017800 chrUn 96.400 1972 63 6 568 2538 175762113 175764077 0 3241
9 TraesCS5A01G017800 chr7B 96.123 1986 67 8 568 2549 552932143 552930164 0 3232


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G017800 chr5A 14184800 14187348 2548 True 4708 4708 100.000 1 2549 1 chr5A.!!$R1 2548
1 TraesCS5A01G017800 chr5A 91049247 91051224 1977 False 3291 3291 96.672 568 2549 1 chr5A.!!$F2 1981
2 TraesCS5A01G017800 chr5A 90997658 90999632 1974 False 3265 3265 96.472 568 2549 1 chr5A.!!$F1 1981
3 TraesCS5A01G017800 chr7A 150201061 150203038 1977 True 3319 3319 96.927 568 2549 1 chr7A.!!$R1 1981
4 TraesCS5A01G017800 chr7A 689994392 689996370 1978 True 3315 3315 96.877 567 2549 1 chr7A.!!$R2 1982
5 TraesCS5A01G017800 chr6A 200078199 200080176 1977 False 3275 3275 96.524 568 2549 1 chr6A.!!$F1 1981
6 TraesCS5A01G017800 chr6A 617220903 617222882 1979 True 3245 3245 96.227 555 2538 1 chr6A.!!$R1 1983
7 TraesCS5A01G017800 chr4A 626932271 626934246 1975 True 3267 3267 96.470 568 2549 1 chr4A.!!$R1 1981
8 TraesCS5A01G017800 chrUn 175762113 175764077 1964 False 3241 3241 96.400 568 2538 1 chrUn.!!$F1 1970
9 TraesCS5A01G017800 chr7B 552930164 552932143 1979 True 3232 3232 96.123 568 2549 1 chr7B.!!$R1 1981

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 297 0.034477 GGTGGGGGTGTACCTTCATG 60.034 60.0 0.44 0.0 40.03 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2184 2197 1.251527 AAACACCACAAACCCACGCA 61.252 50.0 0.0 0.0 0.0 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.862371 TTGTACTTGTTCTTTTAATTTTGAGCA 57.138 25.926 0.00 0.00 0.00 4.26
35 36 9.862371 TGTACTTGTTCTTTTAATTTTGAGCAA 57.138 25.926 0.00 0.00 0.00 3.91
38 39 9.435688 ACTTGTTCTTTTAATTTTGAGCAAACT 57.564 25.926 0.00 0.00 31.42 2.66
85 86 9.698309 TGTTTATTTGTTTTCAGAAACTTGTCA 57.302 25.926 0.00 0.00 44.33 3.58
88 89 9.921637 TTATTTGTTTTCAGAAACTTGTCAACT 57.078 25.926 0.00 0.00 44.33 3.16
89 90 8.831715 ATTTGTTTTCAGAAACTTGTCAACTT 57.168 26.923 0.00 0.00 44.33 2.66
90 91 7.867445 TTGTTTTCAGAAACTTGTCAACTTC 57.133 32.000 0.00 0.00 44.33 3.01
91 92 7.214467 TGTTTTCAGAAACTTGTCAACTTCT 57.786 32.000 0.00 1.00 44.33 2.85
92 93 7.083858 TGTTTTCAGAAACTTGTCAACTTCTG 58.916 34.615 18.60 18.60 44.33 3.02
93 94 4.882671 TCAGAAACTTGTCAACTTCTGC 57.117 40.909 19.32 0.00 42.87 4.26
94 95 4.260985 TCAGAAACTTGTCAACTTCTGCA 58.739 39.130 19.32 11.02 42.87 4.41
95 96 4.883585 TCAGAAACTTGTCAACTTCTGCAT 59.116 37.500 19.32 0.00 42.87 3.96
96 97 4.974275 CAGAAACTTGTCAACTTCTGCATG 59.026 41.667 15.06 0.00 38.63 4.06
97 98 4.641989 AGAAACTTGTCAACTTCTGCATGT 59.358 37.500 0.00 0.00 0.00 3.21
98 99 5.822519 AGAAACTTGTCAACTTCTGCATGTA 59.177 36.000 0.00 0.00 0.00 2.29
99 100 5.679734 AACTTGTCAACTTCTGCATGTAG 57.320 39.130 4.14 4.14 0.00 2.74
100 101 3.499918 ACTTGTCAACTTCTGCATGTAGC 59.500 43.478 5.85 0.00 45.96 3.58
111 112 1.656652 GCATGTAGCGAGGACATTGT 58.343 50.000 0.00 0.00 35.31 2.71
112 113 1.328680 GCATGTAGCGAGGACATTGTG 59.671 52.381 0.00 0.00 35.31 3.33
113 114 1.935873 CATGTAGCGAGGACATTGTGG 59.064 52.381 0.00 0.00 35.31 4.17
114 115 0.249120 TGTAGCGAGGACATTGTGGG 59.751 55.000 0.00 0.00 0.00 4.61
115 116 0.249398 GTAGCGAGGACATTGTGGGT 59.751 55.000 0.00 0.00 0.00 4.51
116 117 1.479323 GTAGCGAGGACATTGTGGGTA 59.521 52.381 0.00 0.00 0.00 3.69
117 118 0.981183 AGCGAGGACATTGTGGGTAA 59.019 50.000 0.00 0.00 0.00 2.85
118 119 1.559682 AGCGAGGACATTGTGGGTAAT 59.440 47.619 0.00 0.00 0.00 1.89
119 120 2.769663 AGCGAGGACATTGTGGGTAATA 59.230 45.455 0.00 0.00 0.00 0.98
120 121 3.131396 GCGAGGACATTGTGGGTAATAG 58.869 50.000 0.00 0.00 0.00 1.73
121 122 3.728845 CGAGGACATTGTGGGTAATAGG 58.271 50.000 0.00 0.00 0.00 2.57
122 123 3.134081 CGAGGACATTGTGGGTAATAGGT 59.866 47.826 0.00 0.00 0.00 3.08
123 124 4.383770 CGAGGACATTGTGGGTAATAGGTT 60.384 45.833 0.00 0.00 0.00 3.50
124 125 5.112129 AGGACATTGTGGGTAATAGGTTC 57.888 43.478 0.00 0.00 0.00 3.62
125 126 4.788617 AGGACATTGTGGGTAATAGGTTCT 59.211 41.667 0.00 0.00 0.00 3.01
126 127 5.968167 AGGACATTGTGGGTAATAGGTTCTA 59.032 40.000 0.00 0.00 0.00 2.10
127 128 6.099845 AGGACATTGTGGGTAATAGGTTCTAG 59.900 42.308 0.00 0.00 0.00 2.43
128 129 6.099269 GGACATTGTGGGTAATAGGTTCTAGA 59.901 42.308 0.00 0.00 0.00 2.43
129 130 6.885922 ACATTGTGGGTAATAGGTTCTAGAC 58.114 40.000 0.00 0.00 0.00 2.59
130 131 6.672657 ACATTGTGGGTAATAGGTTCTAGACT 59.327 38.462 0.00 0.00 0.00 3.24
131 132 7.842743 ACATTGTGGGTAATAGGTTCTAGACTA 59.157 37.037 0.00 0.00 0.00 2.59
132 133 8.871125 CATTGTGGGTAATAGGTTCTAGACTAT 58.129 37.037 0.00 0.00 0.00 2.12
133 134 8.474710 TTGTGGGTAATAGGTTCTAGACTATC 57.525 38.462 0.00 0.00 0.00 2.08
134 135 7.589081 TGTGGGTAATAGGTTCTAGACTATCA 58.411 38.462 0.00 0.00 0.00 2.15
135 136 7.504911 TGTGGGTAATAGGTTCTAGACTATCAC 59.495 40.741 0.00 3.11 0.00 3.06
136 137 7.724951 GTGGGTAATAGGTTCTAGACTATCACT 59.275 40.741 0.00 0.00 0.00 3.41
137 138 8.287350 TGGGTAATAGGTTCTAGACTATCACTT 58.713 37.037 0.00 0.00 0.00 3.16
138 139 9.145442 GGGTAATAGGTTCTAGACTATCACTTT 57.855 37.037 0.00 0.00 0.00 2.66
142 143 9.649316 AATAGGTTCTAGACTATCACTTTAGCT 57.351 33.333 0.00 0.00 0.00 3.32
143 144 7.964666 AGGTTCTAGACTATCACTTTAGCTT 57.035 36.000 0.00 0.00 0.00 3.74
144 145 8.368962 AGGTTCTAGACTATCACTTTAGCTTT 57.631 34.615 0.00 0.00 0.00 3.51
145 146 8.817876 AGGTTCTAGACTATCACTTTAGCTTTT 58.182 33.333 0.00 0.00 0.00 2.27
152 153 9.794719 AGACTATCACTTTAGCTTTTAACCTTT 57.205 29.630 0.00 0.00 0.00 3.11
180 181 9.554724 CTATTTATCACAATTACAACACACACC 57.445 33.333 0.00 0.00 0.00 4.16
181 182 4.846779 ATCACAATTACAACACACACCC 57.153 40.909 0.00 0.00 0.00 4.61
182 183 3.621558 TCACAATTACAACACACACCCA 58.378 40.909 0.00 0.00 0.00 4.51
183 184 3.378742 TCACAATTACAACACACACCCAC 59.621 43.478 0.00 0.00 0.00 4.61
184 185 3.129462 CACAATTACAACACACACCCACA 59.871 43.478 0.00 0.00 0.00 4.17
185 186 3.129638 ACAATTACAACACACACCCACAC 59.870 43.478 0.00 0.00 0.00 3.82
186 187 2.491675 TTACAACACACACCCACACA 57.508 45.000 0.00 0.00 0.00 3.72
187 188 1.740297 TACAACACACACCCACACAC 58.260 50.000 0.00 0.00 0.00 3.82
188 189 0.250945 ACAACACACACCCACACACA 60.251 50.000 0.00 0.00 0.00 3.72
189 190 0.170116 CAACACACACCCACACACAC 59.830 55.000 0.00 0.00 0.00 3.82
190 191 0.250945 AACACACACCCACACACACA 60.251 50.000 0.00 0.00 0.00 3.72
191 192 0.676466 ACACACACCCACACACACAG 60.676 55.000 0.00 0.00 0.00 3.66
192 193 0.392327 CACACACCCACACACACAGA 60.392 55.000 0.00 0.00 0.00 3.41
193 194 0.107703 ACACACCCACACACACAGAG 60.108 55.000 0.00 0.00 0.00 3.35
194 195 0.815213 CACACCCACACACACAGAGG 60.815 60.000 0.00 0.00 0.00 3.69
195 196 1.271840 ACACCCACACACACAGAGGT 61.272 55.000 0.00 0.00 0.00 3.85
196 197 0.107214 CACCCACACACACAGAGGTT 60.107 55.000 0.00 0.00 0.00 3.50
197 198 0.107214 ACCCACACACACAGAGGTTG 60.107 55.000 0.00 0.00 0.00 3.77
198 199 0.819259 CCCACACACACAGAGGTTGG 60.819 60.000 0.00 0.00 0.00 3.77
199 200 1.447317 CCACACACACAGAGGTTGGC 61.447 60.000 0.00 0.00 0.00 4.52
200 201 1.152963 ACACACACAGAGGTTGGCC 60.153 57.895 0.00 0.00 0.00 5.36
201 202 2.111043 ACACACAGAGGTTGGCCG 59.889 61.111 0.00 0.00 40.50 6.13
202 203 2.669569 CACACAGAGGTTGGCCGG 60.670 66.667 0.00 0.00 40.50 6.13
203 204 3.953775 ACACAGAGGTTGGCCGGG 61.954 66.667 2.18 0.00 40.50 5.73
204 205 3.636231 CACAGAGGTTGGCCGGGA 61.636 66.667 2.18 0.00 40.50 5.14
205 206 3.637273 ACAGAGGTTGGCCGGGAC 61.637 66.667 2.18 0.00 40.50 4.46
206 207 3.636231 CAGAGGTTGGCCGGGACA 61.636 66.667 0.00 0.00 40.50 4.02
207 208 2.852075 AGAGGTTGGCCGGGACAA 60.852 61.111 12.33 12.33 40.50 3.18
208 209 2.359975 GAGGTTGGCCGGGACAAG 60.360 66.667 17.49 0.00 40.50 3.16
209 210 2.852075 AGGTTGGCCGGGACAAGA 60.852 61.111 17.49 0.00 40.50 3.02
210 211 2.114411 GGTTGGCCGGGACAAGAA 59.886 61.111 17.49 0.00 27.77 2.52
211 212 1.971695 GGTTGGCCGGGACAAGAAG 60.972 63.158 17.49 0.00 27.77 2.85
212 213 1.971695 GTTGGCCGGGACAAGAAGG 60.972 63.158 17.49 0.00 27.77 3.46
213 214 2.150719 TTGGCCGGGACAAGAAGGA 61.151 57.895 12.33 0.00 0.00 3.36
214 215 2.046217 GGCCGGGACAAGAAGGAC 60.046 66.667 2.18 0.00 0.00 3.85
215 216 2.747686 GCCGGGACAAGAAGGACA 59.252 61.111 2.18 0.00 0.00 4.02
216 217 1.072505 GCCGGGACAAGAAGGACAA 59.927 57.895 2.18 0.00 0.00 3.18
217 218 0.322546 GCCGGGACAAGAAGGACAAT 60.323 55.000 2.18 0.00 0.00 2.71
218 219 1.065709 GCCGGGACAAGAAGGACAATA 60.066 52.381 2.18 0.00 0.00 1.90
219 220 2.617021 GCCGGGACAAGAAGGACAATAA 60.617 50.000 2.18 0.00 0.00 1.40
220 221 3.270877 CCGGGACAAGAAGGACAATAAG 58.729 50.000 0.00 0.00 0.00 1.73
221 222 2.678336 CGGGACAAGAAGGACAATAAGC 59.322 50.000 0.00 0.00 0.00 3.09
222 223 2.678336 GGGACAAGAAGGACAATAAGCG 59.322 50.000 0.00 0.00 0.00 4.68
223 224 2.678336 GGACAAGAAGGACAATAAGCGG 59.322 50.000 0.00 0.00 0.00 5.52
224 225 2.084546 ACAAGAAGGACAATAAGCGGC 58.915 47.619 0.00 0.00 0.00 6.53
225 226 1.062587 CAAGAAGGACAATAAGCGGCG 59.937 52.381 0.51 0.51 0.00 6.46
226 227 0.535335 AGAAGGACAATAAGCGGCGA 59.465 50.000 12.98 0.00 0.00 5.54
227 228 1.139058 AGAAGGACAATAAGCGGCGAT 59.861 47.619 12.98 0.00 0.00 4.58
228 229 2.364324 AGAAGGACAATAAGCGGCGATA 59.636 45.455 12.98 2.60 0.00 2.92
229 230 2.150397 AGGACAATAAGCGGCGATAC 57.850 50.000 12.98 0.00 0.00 2.24
230 231 0.782384 GGACAATAAGCGGCGATACG 59.218 55.000 12.98 0.00 0.00 3.06
231 232 1.601162 GGACAATAAGCGGCGATACGA 60.601 52.381 12.98 0.00 35.47 3.43
232 233 1.714460 GACAATAAGCGGCGATACGAG 59.286 52.381 12.98 0.00 35.47 4.18
233 234 1.066605 ACAATAAGCGGCGATACGAGT 59.933 47.619 12.98 0.00 35.47 4.18
234 235 1.452025 CAATAAGCGGCGATACGAGTG 59.548 52.381 12.98 0.00 35.47 3.51
235 236 0.039437 ATAAGCGGCGATACGAGTGG 60.039 55.000 12.98 0.00 35.47 4.00
236 237 2.067091 TAAGCGGCGATACGAGTGGG 62.067 60.000 12.98 0.00 35.47 4.61
237 238 3.896133 GCGGCGATACGAGTGGGA 61.896 66.667 12.98 0.00 35.47 4.37
238 239 2.025727 CGGCGATACGAGTGGGAC 59.974 66.667 0.00 0.00 35.47 4.46
239 240 2.767445 CGGCGATACGAGTGGGACA 61.767 63.158 0.00 0.00 35.47 4.02
240 241 1.740285 GGCGATACGAGTGGGACAT 59.260 57.895 0.00 0.00 44.52 3.06
241 242 0.597637 GGCGATACGAGTGGGACATG 60.598 60.000 0.00 0.00 44.52 3.21
242 243 0.102481 GCGATACGAGTGGGACATGT 59.898 55.000 0.00 0.00 44.52 3.21
243 244 1.470979 GCGATACGAGTGGGACATGTT 60.471 52.381 0.00 0.00 44.52 2.71
244 245 2.193447 CGATACGAGTGGGACATGTTG 58.807 52.381 0.00 0.00 44.52 3.33
245 246 2.159296 CGATACGAGTGGGACATGTTGA 60.159 50.000 0.00 0.00 44.52 3.18
246 247 3.674955 CGATACGAGTGGGACATGTTGAA 60.675 47.826 0.00 0.00 44.52 2.69
247 248 2.631160 ACGAGTGGGACATGTTGAAA 57.369 45.000 0.00 0.00 44.52 2.69
248 249 3.140325 ACGAGTGGGACATGTTGAAAT 57.860 42.857 0.00 0.00 44.52 2.17
249 250 4.280436 ACGAGTGGGACATGTTGAAATA 57.720 40.909 0.00 0.00 44.52 1.40
250 251 4.253685 ACGAGTGGGACATGTTGAAATAG 58.746 43.478 0.00 0.00 44.52 1.73
251 252 4.020573 ACGAGTGGGACATGTTGAAATAGA 60.021 41.667 0.00 0.00 44.52 1.98
252 253 4.330074 CGAGTGGGACATGTTGAAATAGAC 59.670 45.833 0.00 0.00 44.52 2.59
253 254 5.241403 AGTGGGACATGTTGAAATAGACA 57.759 39.130 0.00 0.00 44.52 3.41
254 255 5.630121 AGTGGGACATGTTGAAATAGACAA 58.370 37.500 0.00 0.00 44.52 3.18
255 256 5.473504 AGTGGGACATGTTGAAATAGACAAC 59.526 40.000 0.00 0.00 44.52 3.32
256 257 4.454161 TGGGACATGTTGAAATAGACAACG 59.546 41.667 0.00 0.00 46.96 4.10
257 258 4.454504 GGGACATGTTGAAATAGACAACGT 59.545 41.667 0.00 0.00 46.96 3.99
258 259 5.048991 GGGACATGTTGAAATAGACAACGTT 60.049 40.000 0.00 0.00 46.96 3.99
259 260 5.851177 GGACATGTTGAAATAGACAACGTTG 59.149 40.000 26.20 26.20 46.96 4.10
260 261 6.293190 GGACATGTTGAAATAGACAACGTTGA 60.293 38.462 33.66 13.02 46.96 3.18
261 262 7.202016 ACATGTTGAAATAGACAACGTTGAT 57.798 32.000 33.66 22.50 46.96 2.57
262 263 7.077605 ACATGTTGAAATAGACAACGTTGATG 58.922 34.615 33.66 21.89 46.96 3.07
263 264 6.612247 TGTTGAAATAGACAACGTTGATGT 57.388 33.333 33.66 18.81 46.96 3.06
264 265 6.426327 TGTTGAAATAGACAACGTTGATGTG 58.574 36.000 33.66 9.12 46.96 3.21
265 266 6.037720 TGTTGAAATAGACAACGTTGATGTGT 59.962 34.615 33.66 12.79 46.96 3.72
266 267 6.223138 TGAAATAGACAACGTTGATGTGTC 57.777 37.500 33.66 20.82 0.00 3.67
267 268 5.989168 TGAAATAGACAACGTTGATGTGTCT 59.011 36.000 33.66 26.16 41.87 3.41
268 269 6.145534 TGAAATAGACAACGTTGATGTGTCTC 59.854 38.462 33.66 18.41 40.00 3.36
269 270 3.735237 AGACAACGTTGATGTGTCTCT 57.265 42.857 33.66 20.28 35.19 3.10
270 271 3.384668 AGACAACGTTGATGTGTCTCTG 58.615 45.455 33.66 4.50 35.19 3.35
271 272 3.123804 GACAACGTTGATGTGTCTCTGT 58.876 45.455 33.66 8.12 0.00 3.41
272 273 2.866156 ACAACGTTGATGTGTCTCTGTG 59.134 45.455 33.66 3.80 0.00 3.66
273 274 1.502231 ACGTTGATGTGTCTCTGTGC 58.498 50.000 0.00 0.00 0.00 4.57
274 275 0.436150 CGTTGATGTGTCTCTGTGCG 59.564 55.000 0.00 0.00 0.00 5.34
275 276 0.792640 GTTGATGTGTCTCTGTGCGG 59.207 55.000 0.00 0.00 0.00 5.69
276 277 0.320683 TTGATGTGTCTCTGTGCGGG 60.321 55.000 0.00 0.00 0.00 6.13
277 278 1.448540 GATGTGTCTCTGTGCGGGG 60.449 63.158 0.00 0.00 0.00 5.73
278 279 2.859273 GATGTGTCTCTGTGCGGGGG 62.859 65.000 0.00 0.00 0.00 5.40
279 280 3.626924 GTGTCTCTGTGCGGGGGT 61.627 66.667 0.00 0.00 0.00 4.95
280 281 3.625897 TGTCTCTGTGCGGGGGTG 61.626 66.667 0.00 0.00 0.00 4.61
281 282 4.394712 GTCTCTGTGCGGGGGTGG 62.395 72.222 0.00 0.00 0.00 4.61
291 292 4.688302 GGGGGTGGGGGTGTACCT 62.688 72.222 0.44 0.00 40.03 3.08
292 293 2.533492 GGGGTGGGGGTGTACCTT 60.533 66.667 0.44 0.00 40.03 3.50
293 294 2.609534 GGGGTGGGGGTGTACCTTC 61.610 68.421 0.44 0.00 40.03 3.46
294 295 1.848895 GGGTGGGGGTGTACCTTCA 60.849 63.158 0.44 0.00 40.03 3.02
295 296 1.212250 GGGTGGGGGTGTACCTTCAT 61.212 60.000 0.44 0.00 40.03 2.57
296 297 0.034477 GGTGGGGGTGTACCTTCATG 60.034 60.000 0.44 0.00 40.03 3.07
297 298 0.696501 GTGGGGGTGTACCTTCATGT 59.303 55.000 0.44 0.00 40.03 3.21
298 299 1.910671 GTGGGGGTGTACCTTCATGTA 59.089 52.381 0.44 0.00 40.03 2.29
299 300 2.508300 GTGGGGGTGTACCTTCATGTAT 59.492 50.000 0.44 0.00 40.03 2.29
300 301 3.712733 GTGGGGGTGTACCTTCATGTATA 59.287 47.826 0.44 0.00 40.03 1.47
301 302 3.971305 TGGGGGTGTACCTTCATGTATAG 59.029 47.826 0.44 0.00 40.03 1.31
302 303 3.326880 GGGGGTGTACCTTCATGTATAGG 59.673 52.174 0.44 8.94 40.03 2.57
303 304 3.326880 GGGGTGTACCTTCATGTATAGGG 59.673 52.174 13.30 0.00 40.03 3.53
304 305 3.971971 GGGTGTACCTTCATGTATAGGGT 59.028 47.826 13.30 4.57 35.79 4.34
305 306 4.411212 GGGTGTACCTTCATGTATAGGGTT 59.589 45.833 13.30 0.35 35.79 4.11
306 307 5.603813 GGGTGTACCTTCATGTATAGGGTTA 59.396 44.000 13.30 0.00 35.79 2.85
307 308 6.100134 GGGTGTACCTTCATGTATAGGGTTAA 59.900 42.308 13.30 0.00 35.79 2.01
308 309 7.215085 GGTGTACCTTCATGTATAGGGTTAAG 58.785 42.308 13.30 0.00 35.79 1.85
309 310 7.215085 GTGTACCTTCATGTATAGGGTTAAGG 58.785 42.308 13.30 8.68 38.36 2.69
310 311 5.306114 ACCTTCATGTATAGGGTTAAGGC 57.694 43.478 13.30 0.00 36.33 4.35
311 312 4.104261 ACCTTCATGTATAGGGTTAAGGCC 59.896 45.833 0.00 0.00 36.33 5.19
312 313 4.104102 CCTTCATGTATAGGGTTAAGGCCA 59.896 45.833 5.01 0.00 0.00 5.36
313 314 5.222130 CCTTCATGTATAGGGTTAAGGCCAT 60.222 44.000 5.01 0.00 0.00 4.40
314 315 6.012858 CCTTCATGTATAGGGTTAAGGCCATA 60.013 42.308 5.01 0.00 0.00 2.74
315 316 6.368779 TCATGTATAGGGTTAAGGCCATAC 57.631 41.667 5.01 1.77 0.00 2.39
316 317 5.847265 TCATGTATAGGGTTAAGGCCATACA 59.153 40.000 5.01 8.17 34.23 2.29
317 318 6.330514 TCATGTATAGGGTTAAGGCCATACAA 59.669 38.462 5.01 0.00 33.77 2.41
318 319 6.773583 TGTATAGGGTTAAGGCCATACAAT 57.226 37.500 5.01 0.00 29.78 2.71
319 320 6.539173 TGTATAGGGTTAAGGCCATACAATG 58.461 40.000 5.01 0.00 29.78 2.82
320 321 5.663158 ATAGGGTTAAGGCCATACAATGT 57.337 39.130 5.01 0.00 0.00 2.71
321 322 4.331159 AGGGTTAAGGCCATACAATGTT 57.669 40.909 5.01 0.00 0.00 2.71
322 323 4.683643 AGGGTTAAGGCCATACAATGTTT 58.316 39.130 5.01 0.00 0.00 2.83
323 324 4.466015 AGGGTTAAGGCCATACAATGTTTG 59.534 41.667 5.01 0.00 0.00 2.93
325 326 5.407502 GGTTAAGGCCATACAATGTTTGTC 58.592 41.667 5.01 0.00 44.12 3.18
326 327 5.185056 GGTTAAGGCCATACAATGTTTGTCT 59.815 40.000 5.01 0.00 44.12 3.41
327 328 6.295067 GGTTAAGGCCATACAATGTTTGTCTT 60.295 38.462 5.01 8.35 44.12 3.01
328 329 5.391312 AAGGCCATACAATGTTTGTCTTC 57.609 39.130 5.01 0.00 44.12 2.87
329 330 4.666512 AGGCCATACAATGTTTGTCTTCT 58.333 39.130 5.01 0.00 44.12 2.85
330 331 4.702131 AGGCCATACAATGTTTGTCTTCTC 59.298 41.667 5.01 0.00 44.12 2.87
331 332 4.142381 GGCCATACAATGTTTGTCTTCTCC 60.142 45.833 0.00 0.00 44.12 3.71
332 333 4.142381 GCCATACAATGTTTGTCTTCTCCC 60.142 45.833 3.36 0.00 44.12 4.30
333 334 4.094887 CCATACAATGTTTGTCTTCTCCCG 59.905 45.833 3.36 0.00 44.12 5.14
334 335 3.208747 ACAATGTTTGTCTTCTCCCGT 57.791 42.857 0.00 0.00 40.56 5.28
335 336 3.551846 ACAATGTTTGTCTTCTCCCGTT 58.448 40.909 0.00 0.00 40.56 4.44
336 337 3.315191 ACAATGTTTGTCTTCTCCCGTTG 59.685 43.478 0.00 0.00 40.56 4.10
337 338 1.305201 TGTTTGTCTTCTCCCGTTGC 58.695 50.000 0.00 0.00 0.00 4.17
338 339 1.305201 GTTTGTCTTCTCCCGTTGCA 58.695 50.000 0.00 0.00 0.00 4.08
339 340 1.673920 GTTTGTCTTCTCCCGTTGCAA 59.326 47.619 0.00 0.00 0.00 4.08
340 341 2.045561 TTGTCTTCTCCCGTTGCAAA 57.954 45.000 0.00 0.00 0.00 3.68
341 342 1.593196 TGTCTTCTCCCGTTGCAAAG 58.407 50.000 0.00 2.09 0.00 2.77
342 343 0.238553 GTCTTCTCCCGTTGCAAAGC 59.761 55.000 0.00 0.00 0.00 3.51
343 344 0.179032 TCTTCTCCCGTTGCAAAGCA 60.179 50.000 0.00 0.00 36.47 3.91
344 345 0.040067 CTTCTCCCGTTGCAAAGCAC 60.040 55.000 0.00 0.00 38.71 4.40
345 346 1.781025 TTCTCCCGTTGCAAAGCACG 61.781 55.000 0.00 0.05 38.71 5.34
346 347 3.254014 CTCCCGTTGCAAAGCACGG 62.254 63.158 18.66 18.66 45.37 4.94
348 349 4.999939 CCGTTGCAAAGCACGGGC 63.000 66.667 17.99 0.00 43.66 6.13
349 350 4.263209 CGTTGCAAAGCACGGGCA 62.263 61.111 14.57 0.00 44.61 5.36
350 351 2.339712 GTTGCAAAGCACGGGCAT 59.660 55.556 14.57 0.00 44.61 4.40
351 352 2.023223 GTTGCAAAGCACGGGCATG 61.023 57.895 14.57 12.30 44.61 4.06
352 353 2.198969 TTGCAAAGCACGGGCATGA 61.199 52.632 14.57 0.00 44.61 3.07
353 354 1.534336 TTGCAAAGCACGGGCATGAT 61.534 50.000 14.57 0.00 44.61 2.45
354 355 1.216178 GCAAAGCACGGGCATGATT 59.784 52.632 14.57 0.00 44.61 2.57
355 356 1.079875 GCAAAGCACGGGCATGATTG 61.080 55.000 14.57 12.65 44.61 2.67
379 380 7.222000 GCTAGTAGCAGATAAGGACAATACT 57.778 40.000 17.47 0.00 41.89 2.12
380 381 7.087639 GCTAGTAGCAGATAAGGACAATACTG 58.912 42.308 17.47 0.00 41.89 2.74
381 382 6.412362 AGTAGCAGATAAGGACAATACTGG 57.588 41.667 0.00 0.00 0.00 4.00
382 383 5.900123 AGTAGCAGATAAGGACAATACTGGT 59.100 40.000 0.00 0.00 39.01 4.00
383 384 5.700402 AGCAGATAAGGACAATACTGGTT 57.300 39.130 0.00 0.00 33.40 3.67
384 385 6.808321 AGCAGATAAGGACAATACTGGTTA 57.192 37.500 0.00 0.00 33.40 2.85
385 386 6.583562 AGCAGATAAGGACAATACTGGTTAC 58.416 40.000 0.00 0.00 33.40 2.50
386 387 6.156256 AGCAGATAAGGACAATACTGGTTACA 59.844 38.462 0.00 0.00 33.40 2.41
387 388 6.821665 GCAGATAAGGACAATACTGGTTACAA 59.178 38.462 0.00 0.00 0.00 2.41
388 389 7.499232 GCAGATAAGGACAATACTGGTTACAAT 59.501 37.037 0.00 0.00 0.00 2.71
389 390 9.046296 CAGATAAGGACAATACTGGTTACAATC 57.954 37.037 0.00 0.00 0.00 2.67
390 391 8.768397 AGATAAGGACAATACTGGTTACAATCA 58.232 33.333 0.00 0.00 0.00 2.57
391 392 9.561069 GATAAGGACAATACTGGTTACAATCAT 57.439 33.333 0.00 0.00 0.00 2.45
394 395 9.920946 AAGGACAATACTGGTTACAATCATAAT 57.079 29.630 0.00 0.00 0.00 1.28
403 404 8.938883 ACTGGTTACAATCATAATACAGGATCT 58.061 33.333 0.00 0.00 31.44 2.75
404 405 9.429359 CTGGTTACAATCATAATACAGGATCTC 57.571 37.037 0.00 0.00 0.00 2.75
405 406 8.933653 TGGTTACAATCATAATACAGGATCTCA 58.066 33.333 0.00 0.00 0.00 3.27
406 407 9.778741 GGTTACAATCATAATACAGGATCTCAA 57.221 33.333 0.00 0.00 0.00 3.02
414 415 9.904198 TCATAATACAGGATCTCAAATCACAAA 57.096 29.630 0.00 0.00 0.00 2.83
415 416 9.941664 CATAATACAGGATCTCAAATCACAAAC 57.058 33.333 0.00 0.00 0.00 2.93
416 417 9.911788 ATAATACAGGATCTCAAATCACAAACT 57.088 29.630 0.00 0.00 0.00 2.66
417 418 8.641498 AATACAGGATCTCAAATCACAAACTT 57.359 30.769 0.00 0.00 0.00 2.66
418 419 9.739276 AATACAGGATCTCAAATCACAAACTTA 57.261 29.630 0.00 0.00 0.00 2.24
419 420 7.678947 ACAGGATCTCAAATCACAAACTTAG 57.321 36.000 0.00 0.00 0.00 2.18
420 421 7.453393 ACAGGATCTCAAATCACAAACTTAGA 58.547 34.615 0.00 0.00 0.00 2.10
421 422 7.939039 ACAGGATCTCAAATCACAAACTTAGAA 59.061 33.333 0.00 0.00 0.00 2.10
422 423 8.786898 CAGGATCTCAAATCACAAACTTAGAAA 58.213 33.333 0.00 0.00 0.00 2.52
423 424 9.007901 AGGATCTCAAATCACAAACTTAGAAAG 57.992 33.333 0.00 0.00 0.00 2.62
424 425 9.003658 GGATCTCAAATCACAAACTTAGAAAGA 57.996 33.333 0.00 0.00 0.00 2.52
425 426 9.818796 GATCTCAAATCACAAACTTAGAAAGAC 57.181 33.333 0.00 0.00 0.00 3.01
426 427 8.154649 TCTCAAATCACAAACTTAGAAAGACC 57.845 34.615 0.00 0.00 0.00 3.85
427 428 7.228706 TCTCAAATCACAAACTTAGAAAGACCC 59.771 37.037 0.00 0.00 0.00 4.46
428 429 6.831353 TCAAATCACAAACTTAGAAAGACCCA 59.169 34.615 0.00 0.00 0.00 4.51
429 430 6.884280 AATCACAAACTTAGAAAGACCCAG 57.116 37.500 0.00 0.00 0.00 4.45
430 431 4.714632 TCACAAACTTAGAAAGACCCAGG 58.285 43.478 0.00 0.00 0.00 4.45
431 432 4.410883 TCACAAACTTAGAAAGACCCAGGA 59.589 41.667 0.00 0.00 0.00 3.86
432 433 5.104277 TCACAAACTTAGAAAGACCCAGGAA 60.104 40.000 0.00 0.00 0.00 3.36
433 434 5.239525 CACAAACTTAGAAAGACCCAGGAAG 59.760 44.000 0.00 0.00 0.00 3.46
434 435 5.132144 ACAAACTTAGAAAGACCCAGGAAGA 59.868 40.000 0.00 0.00 0.00 2.87
435 436 5.906772 AACTTAGAAAGACCCAGGAAGAA 57.093 39.130 0.00 0.00 0.00 2.52
436 437 5.906772 ACTTAGAAAGACCCAGGAAGAAA 57.093 39.130 0.00 0.00 0.00 2.52
437 438 6.455690 ACTTAGAAAGACCCAGGAAGAAAT 57.544 37.500 0.00 0.00 0.00 2.17
438 439 6.853490 ACTTAGAAAGACCCAGGAAGAAATT 58.147 36.000 0.00 0.00 0.00 1.82
439 440 7.985589 ACTTAGAAAGACCCAGGAAGAAATTA 58.014 34.615 0.00 0.00 0.00 1.40
440 441 7.883833 ACTTAGAAAGACCCAGGAAGAAATTAC 59.116 37.037 0.00 0.00 0.00 1.89
441 442 6.200878 AGAAAGACCCAGGAAGAAATTACA 57.799 37.500 0.00 0.00 0.00 2.41
442 443 6.610830 AGAAAGACCCAGGAAGAAATTACAA 58.389 36.000 0.00 0.00 0.00 2.41
443 444 6.717084 AGAAAGACCCAGGAAGAAATTACAAG 59.283 38.462 0.00 0.00 0.00 3.16
444 445 5.584551 AGACCCAGGAAGAAATTACAAGT 57.415 39.130 0.00 0.00 0.00 3.16
445 446 5.953571 AGACCCAGGAAGAAATTACAAGTT 58.046 37.500 0.00 0.00 0.00 2.66
446 447 6.373759 AGACCCAGGAAGAAATTACAAGTTT 58.626 36.000 0.00 0.00 0.00 2.66
447 448 7.523415 AGACCCAGGAAGAAATTACAAGTTTA 58.477 34.615 0.00 0.00 0.00 2.01
448 449 7.447545 AGACCCAGGAAGAAATTACAAGTTTAC 59.552 37.037 0.00 0.00 0.00 2.01
449 450 7.064229 ACCCAGGAAGAAATTACAAGTTTACA 58.936 34.615 0.00 0.00 0.00 2.41
450 451 7.562088 ACCCAGGAAGAAATTACAAGTTTACAA 59.438 33.333 0.00 0.00 0.00 2.41
451 452 7.865889 CCCAGGAAGAAATTACAAGTTTACAAC 59.134 37.037 0.00 0.00 0.00 3.32
452 453 8.630037 CCAGGAAGAAATTACAAGTTTACAACT 58.370 33.333 0.00 0.00 45.46 3.16
504 505 1.546961 AGCTACCGCTGTACTTGTCT 58.453 50.000 0.00 0.00 46.86 3.41
505 506 1.893801 AGCTACCGCTGTACTTGTCTT 59.106 47.619 0.00 0.00 46.86 3.01
506 507 2.094649 AGCTACCGCTGTACTTGTCTTC 60.095 50.000 0.00 0.00 46.86 2.87
507 508 2.352421 GCTACCGCTGTACTTGTCTTCA 60.352 50.000 0.00 0.00 0.00 3.02
508 509 3.676324 GCTACCGCTGTACTTGTCTTCAT 60.676 47.826 0.00 0.00 0.00 2.57
509 510 3.402628 ACCGCTGTACTTGTCTTCATT 57.597 42.857 0.00 0.00 0.00 2.57
510 511 3.740115 ACCGCTGTACTTGTCTTCATTT 58.260 40.909 0.00 0.00 0.00 2.32
511 512 3.746492 ACCGCTGTACTTGTCTTCATTTC 59.254 43.478 0.00 0.00 0.00 2.17
512 513 3.997021 CCGCTGTACTTGTCTTCATTTCT 59.003 43.478 0.00 0.00 0.00 2.52
513 514 4.092091 CCGCTGTACTTGTCTTCATTTCTC 59.908 45.833 0.00 0.00 0.00 2.87
514 515 4.092091 CGCTGTACTTGTCTTCATTTCTCC 59.908 45.833 0.00 0.00 0.00 3.71
515 516 4.997395 GCTGTACTTGTCTTCATTTCTCCA 59.003 41.667 0.00 0.00 0.00 3.86
516 517 5.106908 GCTGTACTTGTCTTCATTTCTCCAC 60.107 44.000 0.00 0.00 0.00 4.02
517 518 5.305585 TGTACTTGTCTTCATTTCTCCACC 58.694 41.667 0.00 0.00 0.00 4.61
518 519 4.437682 ACTTGTCTTCATTTCTCCACCA 57.562 40.909 0.00 0.00 0.00 4.17
519 520 4.990526 ACTTGTCTTCATTTCTCCACCAT 58.009 39.130 0.00 0.00 0.00 3.55
520 521 6.126863 ACTTGTCTTCATTTCTCCACCATA 57.873 37.500 0.00 0.00 0.00 2.74
521 522 6.542821 ACTTGTCTTCATTTCTCCACCATAA 58.457 36.000 0.00 0.00 0.00 1.90
522 523 6.431234 ACTTGTCTTCATTTCTCCACCATAAC 59.569 38.462 0.00 0.00 0.00 1.89
523 524 6.126863 TGTCTTCATTTCTCCACCATAACT 57.873 37.500 0.00 0.00 0.00 2.24
524 525 6.173339 TGTCTTCATTTCTCCACCATAACTC 58.827 40.000 0.00 0.00 0.00 3.01
525 526 6.013379 TGTCTTCATTTCTCCACCATAACTCT 60.013 38.462 0.00 0.00 0.00 3.24
526 527 6.881602 GTCTTCATTTCTCCACCATAACTCTT 59.118 38.462 0.00 0.00 0.00 2.85
527 528 6.881065 TCTTCATTTCTCCACCATAACTCTTG 59.119 38.462 0.00 0.00 0.00 3.02
528 529 4.943705 TCATTTCTCCACCATAACTCTTGC 59.056 41.667 0.00 0.00 0.00 4.01
529 530 2.672961 TCTCCACCATAACTCTTGCG 57.327 50.000 0.00 0.00 0.00 4.85
530 531 1.207089 TCTCCACCATAACTCTTGCGG 59.793 52.381 0.00 0.00 0.00 5.69
531 532 0.251916 TCCACCATAACTCTTGCGGG 59.748 55.000 0.00 0.00 0.00 6.13
532 533 0.251916 CCACCATAACTCTTGCGGGA 59.748 55.000 0.00 0.00 0.00 5.14
533 534 1.656652 CACCATAACTCTTGCGGGAG 58.343 55.000 4.50 4.50 39.09 4.30
534 535 1.207089 CACCATAACTCTTGCGGGAGA 59.793 52.381 11.82 0.00 37.13 3.71
535 536 1.482593 ACCATAACTCTTGCGGGAGAG 59.517 52.381 11.82 10.51 46.82 3.20
541 542 1.464734 CTCTTGCGGGAGAGTACAGA 58.535 55.000 0.00 0.00 38.65 3.41
542 543 1.819288 CTCTTGCGGGAGAGTACAGAA 59.181 52.381 0.00 0.00 38.65 3.02
543 544 2.428890 CTCTTGCGGGAGAGTACAGAAT 59.571 50.000 0.00 0.00 38.65 2.40
544 545 2.166459 TCTTGCGGGAGAGTACAGAATG 59.834 50.000 0.00 0.00 46.00 2.67
545 546 6.177797 CTCTTGCGGGAGAGTACAGAATGT 62.178 50.000 0.00 0.00 42.95 2.71
546 547 6.891490 CTCTTGCGGGAGAGTACAGAATGTA 61.891 48.000 0.00 0.00 42.40 2.29
547 548 8.128453 CTCTTGCGGGAGAGTACAGAATGTAT 62.128 46.154 0.00 0.00 43.59 2.29
548 549 8.863704 CTCTTGCGGGAGAGTACAGAATGTATA 61.864 44.444 0.00 0.00 43.59 1.47
609 610 5.512404 CCTTTAGTGGTGTCCATGTACTCAA 60.512 44.000 0.00 0.00 35.28 3.02
620 621 3.181497 CCATGTACTCAATTTTGCCCTCG 60.181 47.826 0.00 0.00 0.00 4.63
658 659 2.058125 TTTTGCCCCTAGTCCGTGCA 62.058 55.000 0.00 0.00 0.00 4.57
789 790 2.197324 GTGGCTTGTGGGACCCAA 59.803 61.111 16.98 0.00 34.18 4.12
875 876 1.818363 ACGGCGATAGAGAGCACGA 60.818 57.895 16.62 0.00 39.76 4.35
878 879 0.100682 GGCGATAGAGAGCACGACAA 59.899 55.000 0.00 0.00 39.76 3.18
892 893 3.458872 GACAATGACCATGGCGAGA 57.541 52.632 13.04 0.00 0.00 4.04
912 917 1.001517 AGAGAGAGAGAGCACGGCA 60.002 57.895 0.00 0.00 0.00 5.69
1018 1025 1.558756 CCATGTCTTCCTCAAGCTCCT 59.441 52.381 0.00 0.00 0.00 3.69
1019 1026 2.768527 CCATGTCTTCCTCAAGCTCCTA 59.231 50.000 0.00 0.00 0.00 2.94
1152 1159 0.039798 GTCCGTTCTACGTGTGCAGA 60.040 55.000 0.00 0.00 40.58 4.26
1611 1620 6.887626 TCCACCTAGTTTAAATGTTGGTTC 57.112 37.500 0.00 0.00 0.00 3.62
1722 1731 8.441312 AAAACTTTTGATCAATGAAATGCAGT 57.559 26.923 9.40 0.00 0.00 4.40
1808 1820 1.486726 GTGCAGGCTAGACTAATGGGT 59.513 52.381 0.00 0.00 0.00 4.51
2184 2197 1.609794 GGGACTCGAACCCAGGACT 60.610 63.158 18.78 0.00 46.05 3.85
2287 2301 9.817809 GAAGGTATACATAGTGAGATTGTGAAA 57.182 33.333 5.01 0.00 0.00 2.69
2288 2302 9.601217 AAGGTATACATAGTGAGATTGTGAAAC 57.399 33.333 5.01 0.00 37.35 2.78
2508 2525 8.682128 TGTTAGTTCATGACTTTTTGTTTGAC 57.318 30.769 0.00 0.00 39.86 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.862371 TGCTCAAAATTAAAAGAACAAGTACAA 57.138 25.926 0.00 0.00 0.00 2.41
9 10 9.862371 TTGCTCAAAATTAAAAGAACAAGTACA 57.138 25.926 0.00 0.00 0.00 2.90
12 13 9.435688 AGTTTGCTCAAAATTAAAAGAACAAGT 57.564 25.926 0.00 0.00 31.33 3.16
59 60 9.698309 TGACAAGTTTCTGAAAACAAATAAACA 57.302 25.926 4.09 0.00 45.94 2.83
62 63 9.921637 AGTTGACAAGTTTCTGAAAACAAATAA 57.078 25.926 4.09 0.00 45.94 1.40
63 64 9.921637 AAGTTGACAAGTTTCTGAAAACAAATA 57.078 25.926 4.09 0.00 45.94 1.40
64 65 8.831715 AAGTTGACAAGTTTCTGAAAACAAAT 57.168 26.923 4.09 4.08 45.94 2.32
65 66 8.141268 AGAAGTTGACAAGTTTCTGAAAACAAA 58.859 29.630 9.59 0.00 45.94 2.83
66 67 7.594758 CAGAAGTTGACAAGTTTCTGAAAACAA 59.405 33.333 24.74 4.62 45.94 2.83
67 68 7.083858 CAGAAGTTGACAAGTTTCTGAAAACA 58.916 34.615 24.74 0.00 45.94 2.83
68 69 6.033937 GCAGAAGTTGACAAGTTTCTGAAAAC 59.966 38.462 29.20 16.76 44.24 2.43
69 70 6.092748 GCAGAAGTTGACAAGTTTCTGAAAA 58.907 36.000 29.20 0.00 0.00 2.29
70 71 5.182950 TGCAGAAGTTGACAAGTTTCTGAAA 59.817 36.000 29.20 19.89 0.00 2.69
71 72 4.699735 TGCAGAAGTTGACAAGTTTCTGAA 59.300 37.500 29.20 22.56 0.00 3.02
72 73 4.260985 TGCAGAAGTTGACAAGTTTCTGA 58.739 39.130 29.20 18.66 0.00 3.27
73 74 4.621068 TGCAGAAGTTGACAAGTTTCTG 57.379 40.909 24.70 24.70 0.00 3.02
74 75 4.641989 ACATGCAGAAGTTGACAAGTTTCT 59.358 37.500 9.59 8.92 0.00 2.52
75 76 4.925068 ACATGCAGAAGTTGACAAGTTTC 58.075 39.130 9.59 6.93 0.00 2.78
76 77 4.989279 ACATGCAGAAGTTGACAAGTTT 57.011 36.364 9.59 0.00 0.00 2.66
77 78 4.023707 GCTACATGCAGAAGTTGACAAGTT 60.024 41.667 8.01 8.01 42.31 2.66
78 79 3.499918 GCTACATGCAGAAGTTGACAAGT 59.500 43.478 0.00 0.00 42.31 3.16
79 80 3.424039 CGCTACATGCAGAAGTTGACAAG 60.424 47.826 0.00 0.00 43.06 3.16
80 81 2.480037 CGCTACATGCAGAAGTTGACAA 59.520 45.455 0.00 0.00 43.06 3.18
81 82 2.068519 CGCTACATGCAGAAGTTGACA 58.931 47.619 0.00 0.00 43.06 3.58
82 83 2.337583 TCGCTACATGCAGAAGTTGAC 58.662 47.619 0.00 0.00 43.06 3.18
83 84 2.610433 CTCGCTACATGCAGAAGTTGA 58.390 47.619 0.00 0.00 43.06 3.18
84 85 1.662629 CCTCGCTACATGCAGAAGTTG 59.337 52.381 0.00 0.00 43.06 3.16
85 86 1.550524 TCCTCGCTACATGCAGAAGTT 59.449 47.619 0.00 0.00 43.06 2.66
86 87 1.134965 GTCCTCGCTACATGCAGAAGT 60.135 52.381 0.00 0.00 43.06 3.01
87 88 1.134995 TGTCCTCGCTACATGCAGAAG 60.135 52.381 0.00 0.00 43.06 2.85
88 89 0.894835 TGTCCTCGCTACATGCAGAA 59.105 50.000 0.00 0.00 43.06 3.02
89 90 1.114627 ATGTCCTCGCTACATGCAGA 58.885 50.000 0.00 0.00 43.06 4.26
90 91 1.596260 CAATGTCCTCGCTACATGCAG 59.404 52.381 0.00 0.00 43.06 4.41
91 92 1.066215 ACAATGTCCTCGCTACATGCA 60.066 47.619 0.00 0.00 43.06 3.96
92 93 1.328680 CACAATGTCCTCGCTACATGC 59.671 52.381 0.00 0.00 37.62 4.06
93 94 1.935873 CCACAATGTCCTCGCTACATG 59.064 52.381 0.00 0.00 37.62 3.21
94 95 1.134401 CCCACAATGTCCTCGCTACAT 60.134 52.381 0.00 0.00 39.22 2.29
95 96 0.249120 CCCACAATGTCCTCGCTACA 59.751 55.000 0.00 0.00 0.00 2.74
96 97 0.249398 ACCCACAATGTCCTCGCTAC 59.751 55.000 0.00 0.00 0.00 3.58
97 98 1.855295 TACCCACAATGTCCTCGCTA 58.145 50.000 0.00 0.00 0.00 4.26
98 99 0.981183 TTACCCACAATGTCCTCGCT 59.019 50.000 0.00 0.00 0.00 4.93
99 100 2.038387 ATTACCCACAATGTCCTCGC 57.962 50.000 0.00 0.00 0.00 5.03
100 101 3.134081 ACCTATTACCCACAATGTCCTCG 59.866 47.826 0.00 0.00 0.00 4.63
101 102 4.772886 ACCTATTACCCACAATGTCCTC 57.227 45.455 0.00 0.00 0.00 3.71
102 103 4.788617 AGAACCTATTACCCACAATGTCCT 59.211 41.667 0.00 0.00 0.00 3.85
103 104 5.112129 AGAACCTATTACCCACAATGTCC 57.888 43.478 0.00 0.00 0.00 4.02
104 105 6.985059 GTCTAGAACCTATTACCCACAATGTC 59.015 42.308 0.00 0.00 0.00 3.06
105 106 6.672657 AGTCTAGAACCTATTACCCACAATGT 59.327 38.462 0.00 0.00 0.00 2.71
106 107 7.125792 AGTCTAGAACCTATTACCCACAATG 57.874 40.000 0.00 0.00 0.00 2.82
107 108 9.091220 GATAGTCTAGAACCTATTACCCACAAT 57.909 37.037 0.00 0.00 0.00 2.71
108 109 8.063153 TGATAGTCTAGAACCTATTACCCACAA 58.937 37.037 0.00 0.00 0.00 3.33
109 110 7.504911 GTGATAGTCTAGAACCTATTACCCACA 59.495 40.741 11.41 1.15 0.00 4.17
110 111 7.724951 AGTGATAGTCTAGAACCTATTACCCAC 59.275 40.741 15.85 12.63 0.00 4.61
111 112 7.823635 AGTGATAGTCTAGAACCTATTACCCA 58.176 38.462 15.85 4.57 0.00 4.51
112 113 8.709272 AAGTGATAGTCTAGAACCTATTACCC 57.291 38.462 15.85 2.71 0.00 3.69
116 117 9.649316 AGCTAAAGTGATAGTCTAGAACCTATT 57.351 33.333 0.00 0.00 0.00 1.73
117 118 9.649316 AAGCTAAAGTGATAGTCTAGAACCTAT 57.351 33.333 0.00 0.00 0.00 2.57
118 119 9.476928 AAAGCTAAAGTGATAGTCTAGAACCTA 57.523 33.333 0.00 0.00 0.00 3.08
119 120 7.964666 AAGCTAAAGTGATAGTCTAGAACCT 57.035 36.000 0.00 0.00 0.00 3.50
126 127 9.794719 AAAGGTTAAAAGCTAAAGTGATAGTCT 57.205 29.630 0.00 0.00 35.34 3.24
154 155 9.554724 GGTGTGTGTTGTAATTGTGATAAATAG 57.445 33.333 0.00 0.00 0.00 1.73
155 156 8.516234 GGGTGTGTGTTGTAATTGTGATAAATA 58.484 33.333 0.00 0.00 0.00 1.40
156 157 7.014711 TGGGTGTGTGTTGTAATTGTGATAAAT 59.985 33.333 0.00 0.00 0.00 1.40
157 158 6.321435 TGGGTGTGTGTTGTAATTGTGATAAA 59.679 34.615 0.00 0.00 0.00 1.40
158 159 5.828328 TGGGTGTGTGTTGTAATTGTGATAA 59.172 36.000 0.00 0.00 0.00 1.75
159 160 5.239744 GTGGGTGTGTGTTGTAATTGTGATA 59.760 40.000 0.00 0.00 0.00 2.15
160 161 4.037446 GTGGGTGTGTGTTGTAATTGTGAT 59.963 41.667 0.00 0.00 0.00 3.06
161 162 3.378742 GTGGGTGTGTGTTGTAATTGTGA 59.621 43.478 0.00 0.00 0.00 3.58
162 163 3.129462 TGTGGGTGTGTGTTGTAATTGTG 59.871 43.478 0.00 0.00 0.00 3.33
163 164 3.129638 GTGTGGGTGTGTGTTGTAATTGT 59.870 43.478 0.00 0.00 0.00 2.71
164 165 3.129462 TGTGTGGGTGTGTGTTGTAATTG 59.871 43.478 0.00 0.00 0.00 2.32
165 166 3.129638 GTGTGTGGGTGTGTGTTGTAATT 59.870 43.478 0.00 0.00 0.00 1.40
166 167 2.685897 GTGTGTGGGTGTGTGTTGTAAT 59.314 45.455 0.00 0.00 0.00 1.89
167 168 2.085320 GTGTGTGGGTGTGTGTTGTAA 58.915 47.619 0.00 0.00 0.00 2.41
168 169 1.003233 TGTGTGTGGGTGTGTGTTGTA 59.997 47.619 0.00 0.00 0.00 2.41
169 170 0.250945 TGTGTGTGGGTGTGTGTTGT 60.251 50.000 0.00 0.00 0.00 3.32
170 171 0.170116 GTGTGTGTGGGTGTGTGTTG 59.830 55.000 0.00 0.00 0.00 3.33
171 172 0.250945 TGTGTGTGTGGGTGTGTGTT 60.251 50.000 0.00 0.00 0.00 3.32
172 173 0.676466 CTGTGTGTGTGGGTGTGTGT 60.676 55.000 0.00 0.00 0.00 3.72
173 174 0.392327 TCTGTGTGTGTGGGTGTGTG 60.392 55.000 0.00 0.00 0.00 3.82
174 175 0.107703 CTCTGTGTGTGTGGGTGTGT 60.108 55.000 0.00 0.00 0.00 3.72
175 176 0.815213 CCTCTGTGTGTGTGGGTGTG 60.815 60.000 0.00 0.00 0.00 3.82
176 177 1.271840 ACCTCTGTGTGTGTGGGTGT 61.272 55.000 0.00 0.00 0.00 4.16
177 178 0.107214 AACCTCTGTGTGTGTGGGTG 60.107 55.000 0.00 0.00 0.00 4.61
178 179 0.107214 CAACCTCTGTGTGTGTGGGT 60.107 55.000 0.00 0.00 0.00 4.51
179 180 0.819259 CCAACCTCTGTGTGTGTGGG 60.819 60.000 0.00 0.00 0.00 4.61
180 181 1.447317 GCCAACCTCTGTGTGTGTGG 61.447 60.000 0.00 0.00 0.00 4.17
181 182 1.447317 GGCCAACCTCTGTGTGTGTG 61.447 60.000 0.00 0.00 0.00 3.82
182 183 1.152963 GGCCAACCTCTGTGTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
183 184 2.253758 CGGCCAACCTCTGTGTGTG 61.254 63.158 2.24 0.00 0.00 3.82
184 185 2.111043 CGGCCAACCTCTGTGTGT 59.889 61.111 2.24 0.00 0.00 3.72
185 186 2.669569 CCGGCCAACCTCTGTGTG 60.670 66.667 2.24 0.00 0.00 3.82
186 187 3.953775 CCCGGCCAACCTCTGTGT 61.954 66.667 2.24 0.00 0.00 3.72
187 188 3.636231 TCCCGGCCAACCTCTGTG 61.636 66.667 2.24 0.00 0.00 3.66
188 189 3.637273 GTCCCGGCCAACCTCTGT 61.637 66.667 2.24 0.00 0.00 3.41
189 190 3.190738 TTGTCCCGGCCAACCTCTG 62.191 63.158 2.24 0.00 0.00 3.35
190 191 2.852075 TTGTCCCGGCCAACCTCT 60.852 61.111 2.24 0.00 0.00 3.69
191 192 2.359975 CTTGTCCCGGCCAACCTC 60.360 66.667 2.24 0.00 0.00 3.85
192 193 2.411765 CTTCTTGTCCCGGCCAACCT 62.412 60.000 2.24 0.00 0.00 3.50
193 194 1.971695 CTTCTTGTCCCGGCCAACC 60.972 63.158 2.24 0.00 0.00 3.77
194 195 1.971695 CCTTCTTGTCCCGGCCAAC 60.972 63.158 2.24 0.00 0.00 3.77
195 196 2.150719 TCCTTCTTGTCCCGGCCAA 61.151 57.895 2.24 0.00 0.00 4.52
196 197 2.528127 TCCTTCTTGTCCCGGCCA 60.528 61.111 2.24 0.00 0.00 5.36
197 198 2.046217 GTCCTTCTTGTCCCGGCC 60.046 66.667 0.00 0.00 0.00 6.13
198 199 0.322546 ATTGTCCTTCTTGTCCCGGC 60.323 55.000 0.00 0.00 0.00 6.13
199 200 3.270877 CTTATTGTCCTTCTTGTCCCGG 58.729 50.000 0.00 0.00 0.00 5.73
200 201 2.678336 GCTTATTGTCCTTCTTGTCCCG 59.322 50.000 0.00 0.00 0.00 5.14
201 202 2.678336 CGCTTATTGTCCTTCTTGTCCC 59.322 50.000 0.00 0.00 0.00 4.46
202 203 2.678336 CCGCTTATTGTCCTTCTTGTCC 59.322 50.000 0.00 0.00 0.00 4.02
203 204 2.096013 GCCGCTTATTGTCCTTCTTGTC 59.904 50.000 0.00 0.00 0.00 3.18
204 205 2.084546 GCCGCTTATTGTCCTTCTTGT 58.915 47.619 0.00 0.00 0.00 3.16
205 206 1.062587 CGCCGCTTATTGTCCTTCTTG 59.937 52.381 0.00 0.00 0.00 3.02
206 207 1.066430 TCGCCGCTTATTGTCCTTCTT 60.066 47.619 0.00 0.00 0.00 2.52
207 208 0.535335 TCGCCGCTTATTGTCCTTCT 59.465 50.000 0.00 0.00 0.00 2.85
208 209 1.583054 ATCGCCGCTTATTGTCCTTC 58.417 50.000 0.00 0.00 0.00 3.46
209 210 2.480845 GTATCGCCGCTTATTGTCCTT 58.519 47.619 0.00 0.00 0.00 3.36
210 211 1.602165 CGTATCGCCGCTTATTGTCCT 60.602 52.381 0.00 0.00 0.00 3.85
211 212 0.782384 CGTATCGCCGCTTATTGTCC 59.218 55.000 0.00 0.00 0.00 4.02
212 213 1.714460 CTCGTATCGCCGCTTATTGTC 59.286 52.381 0.00 0.00 0.00 3.18
213 214 1.066605 ACTCGTATCGCCGCTTATTGT 59.933 47.619 0.00 0.00 0.00 2.71
214 215 1.452025 CACTCGTATCGCCGCTTATTG 59.548 52.381 0.00 0.00 0.00 1.90
215 216 1.602165 CCACTCGTATCGCCGCTTATT 60.602 52.381 0.00 0.00 0.00 1.40
216 217 0.039437 CCACTCGTATCGCCGCTTAT 60.039 55.000 0.00 0.00 0.00 1.73
217 218 1.357690 CCACTCGTATCGCCGCTTA 59.642 57.895 0.00 0.00 0.00 3.09
218 219 2.104331 CCACTCGTATCGCCGCTT 59.896 61.111 0.00 0.00 0.00 4.68
219 220 3.900892 CCCACTCGTATCGCCGCT 61.901 66.667 0.00 0.00 0.00 5.52
220 221 3.896133 TCCCACTCGTATCGCCGC 61.896 66.667 0.00 0.00 0.00 6.53
221 222 2.025727 GTCCCACTCGTATCGCCG 59.974 66.667 0.00 0.00 0.00 6.46
222 223 0.597637 CATGTCCCACTCGTATCGCC 60.598 60.000 0.00 0.00 0.00 5.54
223 224 0.102481 ACATGTCCCACTCGTATCGC 59.898 55.000 0.00 0.00 0.00 4.58
224 225 2.159296 TCAACATGTCCCACTCGTATCG 60.159 50.000 0.00 0.00 0.00 2.92
225 226 3.520290 TCAACATGTCCCACTCGTATC 57.480 47.619 0.00 0.00 0.00 2.24
226 227 3.973206 TTCAACATGTCCCACTCGTAT 57.027 42.857 0.00 0.00 0.00 3.06
227 228 3.755112 TTTCAACATGTCCCACTCGTA 57.245 42.857 0.00 0.00 0.00 3.43
228 229 2.631160 TTTCAACATGTCCCACTCGT 57.369 45.000 0.00 0.00 0.00 4.18
229 230 4.330074 GTCTATTTCAACATGTCCCACTCG 59.670 45.833 0.00 0.00 0.00 4.18
230 231 5.245531 TGTCTATTTCAACATGTCCCACTC 58.754 41.667 0.00 0.00 0.00 3.51
231 232 5.241403 TGTCTATTTCAACATGTCCCACT 57.759 39.130 0.00 0.00 0.00 4.00
232 233 5.616866 CGTTGTCTATTTCAACATGTCCCAC 60.617 44.000 0.00 0.00 43.40 4.61
233 234 4.454161 CGTTGTCTATTTCAACATGTCCCA 59.546 41.667 0.00 0.00 43.40 4.37
234 235 4.454504 ACGTTGTCTATTTCAACATGTCCC 59.545 41.667 0.00 0.00 43.40 4.46
235 236 5.607119 ACGTTGTCTATTTCAACATGTCC 57.393 39.130 0.00 0.00 43.40 4.02
236 237 6.655062 TCAACGTTGTCTATTTCAACATGTC 58.345 36.000 26.47 0.00 43.40 3.06
237 238 6.612247 TCAACGTTGTCTATTTCAACATGT 57.388 33.333 26.47 0.00 43.40 3.21
238 239 7.059831 CACATCAACGTTGTCTATTTCAACATG 59.940 37.037 26.47 18.96 43.40 3.21
239 240 7.077605 CACATCAACGTTGTCTATTTCAACAT 58.922 34.615 26.47 6.53 43.40 2.71
240 241 6.037720 ACACATCAACGTTGTCTATTTCAACA 59.962 34.615 26.47 4.32 43.40 3.33
241 242 6.427150 ACACATCAACGTTGTCTATTTCAAC 58.573 36.000 26.47 0.00 40.89 3.18
242 243 6.481976 AGACACATCAACGTTGTCTATTTCAA 59.518 34.615 26.47 5.60 37.98 2.69
243 244 5.989168 AGACACATCAACGTTGTCTATTTCA 59.011 36.000 26.47 6.35 37.98 2.69
244 245 6.366332 AGAGACACATCAACGTTGTCTATTTC 59.634 38.462 26.47 16.41 39.59 2.17
245 246 6.146184 CAGAGACACATCAACGTTGTCTATTT 59.854 38.462 26.47 9.65 39.59 1.40
246 247 5.635280 CAGAGACACATCAACGTTGTCTATT 59.365 40.000 26.47 11.83 39.59 1.73
247 248 5.164233 CAGAGACACATCAACGTTGTCTAT 58.836 41.667 26.47 16.93 39.59 1.98
248 249 4.037565 ACAGAGACACATCAACGTTGTCTA 59.962 41.667 26.47 9.39 39.59 2.59
249 250 3.181475 ACAGAGACACATCAACGTTGTCT 60.181 43.478 26.47 21.73 41.83 3.41
250 251 3.060272 CACAGAGACACATCAACGTTGTC 60.060 47.826 26.47 17.46 0.00 3.18
251 252 2.866156 CACAGAGACACATCAACGTTGT 59.134 45.455 26.47 8.97 0.00 3.32
252 253 2.348872 GCACAGAGACACATCAACGTTG 60.349 50.000 22.35 22.35 0.00 4.10
253 254 1.867233 GCACAGAGACACATCAACGTT 59.133 47.619 0.00 0.00 0.00 3.99
254 255 1.502231 GCACAGAGACACATCAACGT 58.498 50.000 0.00 0.00 0.00 3.99
255 256 0.436150 CGCACAGAGACACATCAACG 59.564 55.000 0.00 0.00 0.00 4.10
256 257 0.792640 CCGCACAGAGACACATCAAC 59.207 55.000 0.00 0.00 0.00 3.18
257 258 0.320683 CCCGCACAGAGACACATCAA 60.321 55.000 0.00 0.00 0.00 2.57
258 259 1.293179 CCCGCACAGAGACACATCA 59.707 57.895 0.00 0.00 0.00 3.07
259 260 1.448540 CCCCGCACAGAGACACATC 60.449 63.158 0.00 0.00 0.00 3.06
260 261 2.665000 CCCCGCACAGAGACACAT 59.335 61.111 0.00 0.00 0.00 3.21
261 262 3.625897 CCCCCGCACAGAGACACA 61.626 66.667 0.00 0.00 0.00 3.72
262 263 3.626924 ACCCCCGCACAGAGACAC 61.627 66.667 0.00 0.00 0.00 3.67
263 264 3.625897 CACCCCCGCACAGAGACA 61.626 66.667 0.00 0.00 0.00 3.41
264 265 4.394712 CCACCCCCGCACAGAGAC 62.395 72.222 0.00 0.00 0.00 3.36
274 275 4.688302 AGGTACACCCCCACCCCC 62.688 72.222 0.00 0.00 35.25 5.40
275 276 2.533492 AAGGTACACCCCCACCCC 60.533 66.667 0.00 0.00 35.25 4.95
276 277 1.212250 ATGAAGGTACACCCCCACCC 61.212 60.000 0.00 0.00 35.25 4.61
277 278 0.034477 CATGAAGGTACACCCCCACC 60.034 60.000 0.00 0.00 36.42 4.61
278 279 0.696501 ACATGAAGGTACACCCCCAC 59.303 55.000 0.00 0.00 36.42 4.61
279 280 2.345782 TACATGAAGGTACACCCCCA 57.654 50.000 0.00 0.00 36.42 4.96
280 281 3.326880 CCTATACATGAAGGTACACCCCC 59.673 52.174 0.00 0.00 36.42 5.40
281 282 3.326880 CCCTATACATGAAGGTACACCCC 59.673 52.174 0.00 0.00 36.42 4.95
282 283 3.971971 ACCCTATACATGAAGGTACACCC 59.028 47.826 0.00 0.00 36.42 4.61
283 284 5.625568 AACCCTATACATGAAGGTACACC 57.374 43.478 0.00 0.00 0.00 4.16
284 285 7.215085 CCTTAACCCTATACATGAAGGTACAC 58.785 42.308 0.00 0.00 0.00 2.90
285 286 6.183361 GCCTTAACCCTATACATGAAGGTACA 60.183 42.308 0.00 0.00 35.45 2.90
286 287 6.228995 GCCTTAACCCTATACATGAAGGTAC 58.771 44.000 0.00 0.00 35.45 3.34
287 288 5.308759 GGCCTTAACCCTATACATGAAGGTA 59.691 44.000 0.00 0.00 35.45 3.08
288 289 4.104261 GGCCTTAACCCTATACATGAAGGT 59.896 45.833 0.00 0.00 35.45 3.50
289 290 4.104102 TGGCCTTAACCCTATACATGAAGG 59.896 45.833 3.32 3.01 35.99 3.46
290 291 5.304686 TGGCCTTAACCCTATACATGAAG 57.695 43.478 3.32 0.00 0.00 3.02
291 292 5.922960 ATGGCCTTAACCCTATACATGAA 57.077 39.130 3.32 0.00 0.00 2.57
292 293 5.847265 TGTATGGCCTTAACCCTATACATGA 59.153 40.000 3.32 0.00 29.56 3.07
293 294 6.121776 TGTATGGCCTTAACCCTATACATG 57.878 41.667 3.32 0.00 29.56 3.21
294 295 6.773583 TTGTATGGCCTTAACCCTATACAT 57.226 37.500 3.32 0.00 32.10 2.29
295 296 6.102027 ACATTGTATGGCCTTAACCCTATACA 59.898 38.462 3.32 4.14 31.09 2.29
296 297 6.540083 ACATTGTATGGCCTTAACCCTATAC 58.460 40.000 3.32 1.18 33.60 1.47
297 298 6.773583 ACATTGTATGGCCTTAACCCTATA 57.226 37.500 3.32 0.00 33.60 1.31
298 299 5.663158 ACATTGTATGGCCTTAACCCTAT 57.337 39.130 3.32 0.00 33.60 2.57
299 300 5.459982 AACATTGTATGGCCTTAACCCTA 57.540 39.130 3.32 0.00 33.60 3.53
300 301 4.331159 AACATTGTATGGCCTTAACCCT 57.669 40.909 3.32 0.00 33.60 4.34
301 302 4.221924 ACAAACATTGTATGGCCTTAACCC 59.778 41.667 3.32 0.00 43.27 4.11
302 303 5.185056 AGACAAACATTGTATGGCCTTAACC 59.815 40.000 3.32 0.00 45.52 2.85
303 304 6.267496 AGACAAACATTGTATGGCCTTAAC 57.733 37.500 3.32 0.00 45.52 2.01
304 305 6.719370 AGAAGACAAACATTGTATGGCCTTAA 59.281 34.615 3.32 0.00 45.52 1.85
305 306 6.245408 AGAAGACAAACATTGTATGGCCTTA 58.755 36.000 3.32 0.00 45.52 2.69
306 307 5.079643 AGAAGACAAACATTGTATGGCCTT 58.920 37.500 3.32 0.00 45.52 4.35
307 308 4.666512 AGAAGACAAACATTGTATGGCCT 58.333 39.130 3.32 0.00 45.52 5.19
308 309 4.142381 GGAGAAGACAAACATTGTATGGCC 60.142 45.833 0.00 0.00 45.52 5.36
309 310 4.142381 GGGAGAAGACAAACATTGTATGGC 60.142 45.833 0.00 0.00 45.52 4.40
310 311 4.094887 CGGGAGAAGACAAACATTGTATGG 59.905 45.833 0.00 0.00 45.52 2.74
311 312 4.695455 ACGGGAGAAGACAAACATTGTATG 59.305 41.667 0.00 0.00 45.52 2.39
312 313 4.906618 ACGGGAGAAGACAAACATTGTAT 58.093 39.130 0.00 0.00 45.52 2.29
313 314 4.345859 ACGGGAGAAGACAAACATTGTA 57.654 40.909 0.00 0.00 45.52 2.41
315 316 3.853307 GCAACGGGAGAAGACAAACATTG 60.853 47.826 0.00 0.00 0.00 2.82
316 317 2.293399 GCAACGGGAGAAGACAAACATT 59.707 45.455 0.00 0.00 0.00 2.71
317 318 1.880027 GCAACGGGAGAAGACAAACAT 59.120 47.619 0.00 0.00 0.00 2.71
318 319 1.305201 GCAACGGGAGAAGACAAACA 58.695 50.000 0.00 0.00 0.00 2.83
319 320 1.305201 TGCAACGGGAGAAGACAAAC 58.695 50.000 0.00 0.00 0.00 2.93
320 321 2.045561 TTGCAACGGGAGAAGACAAA 57.954 45.000 0.00 0.00 0.00 2.83
321 322 1.946768 CTTTGCAACGGGAGAAGACAA 59.053 47.619 0.00 0.00 0.00 3.18
322 323 1.593196 CTTTGCAACGGGAGAAGACA 58.407 50.000 0.00 0.00 0.00 3.41
323 324 0.238553 GCTTTGCAACGGGAGAAGAC 59.761 55.000 0.00 0.00 0.00 3.01
324 325 0.179032 TGCTTTGCAACGGGAGAAGA 60.179 50.000 0.00 0.00 34.76 2.87
325 326 0.040067 GTGCTTTGCAACGGGAGAAG 60.040 55.000 0.00 0.00 41.47 2.85
326 327 1.781025 CGTGCTTTGCAACGGGAGAA 61.781 55.000 0.00 0.00 41.47 2.87
327 328 2.250939 CGTGCTTTGCAACGGGAGA 61.251 57.895 0.00 0.00 41.47 3.71
328 329 2.252260 CGTGCTTTGCAACGGGAG 59.748 61.111 0.00 0.00 41.47 4.30
329 330 3.283684 CCGTGCTTTGCAACGGGA 61.284 61.111 17.99 4.42 43.66 5.14
331 332 4.999939 GCCCGTGCTTTGCAACGG 63.000 66.667 18.66 18.66 45.37 4.44
332 333 3.556543 ATGCCCGTGCTTTGCAACG 62.557 57.895 0.00 0.00 41.47 4.10
333 334 2.023223 CATGCCCGTGCTTTGCAAC 61.023 57.895 0.00 0.00 41.47 4.17
334 335 1.534336 ATCATGCCCGTGCTTTGCAA 61.534 50.000 0.00 0.00 41.47 4.08
335 336 1.534336 AATCATGCCCGTGCTTTGCA 61.534 50.000 0.00 0.00 39.68 4.08
336 337 1.079875 CAATCATGCCCGTGCTTTGC 61.080 55.000 0.00 0.00 38.71 3.68
337 338 3.038946 CAATCATGCCCGTGCTTTG 57.961 52.632 0.00 0.00 38.71 2.77
355 356 7.087639 CAGTATTGTCCTTATCTGCTACTAGC 58.912 42.308 0.61 0.61 42.82 3.42
356 357 7.231722 ACCAGTATTGTCCTTATCTGCTACTAG 59.768 40.741 0.00 0.00 0.00 2.57
357 358 7.067421 ACCAGTATTGTCCTTATCTGCTACTA 58.933 38.462 0.00 0.00 0.00 1.82
358 359 5.900123 ACCAGTATTGTCCTTATCTGCTACT 59.100 40.000 0.00 0.00 0.00 2.57
359 360 6.163135 ACCAGTATTGTCCTTATCTGCTAC 57.837 41.667 0.00 0.00 0.00 3.58
360 361 6.808321 AACCAGTATTGTCCTTATCTGCTA 57.192 37.500 0.00 0.00 0.00 3.49
361 362 5.700402 AACCAGTATTGTCCTTATCTGCT 57.300 39.130 0.00 0.00 0.00 4.24
362 363 6.346096 TGTAACCAGTATTGTCCTTATCTGC 58.654 40.000 0.00 0.00 0.00 4.26
363 364 8.964476 ATTGTAACCAGTATTGTCCTTATCTG 57.036 34.615 0.00 0.00 0.00 2.90
364 365 8.768397 TGATTGTAACCAGTATTGTCCTTATCT 58.232 33.333 0.00 0.00 0.00 1.98
365 366 8.958119 TGATTGTAACCAGTATTGTCCTTATC 57.042 34.615 0.00 0.00 0.00 1.75
368 369 9.920946 ATTATGATTGTAACCAGTATTGTCCTT 57.079 29.630 0.00 0.00 0.00 3.36
377 378 8.938883 AGATCCTGTATTATGATTGTAACCAGT 58.061 33.333 0.00 0.00 0.00 4.00
378 379 9.429359 GAGATCCTGTATTATGATTGTAACCAG 57.571 37.037 0.00 0.00 0.00 4.00
379 380 8.933653 TGAGATCCTGTATTATGATTGTAACCA 58.066 33.333 0.00 0.00 0.00 3.67
380 381 9.778741 TTGAGATCCTGTATTATGATTGTAACC 57.221 33.333 0.00 0.00 0.00 2.85
388 389 9.904198 TTTGTGATTTGAGATCCTGTATTATGA 57.096 29.630 0.00 0.00 0.00 2.15
389 390 9.941664 GTTTGTGATTTGAGATCCTGTATTATG 57.058 33.333 0.00 0.00 0.00 1.90
390 391 9.911788 AGTTTGTGATTTGAGATCCTGTATTAT 57.088 29.630 0.00 0.00 0.00 1.28
391 392 9.739276 AAGTTTGTGATTTGAGATCCTGTATTA 57.261 29.630 0.00 0.00 0.00 0.98
392 393 8.641498 AAGTTTGTGATTTGAGATCCTGTATT 57.359 30.769 0.00 0.00 0.00 1.89
393 394 9.388506 CTAAGTTTGTGATTTGAGATCCTGTAT 57.611 33.333 0.00 0.00 0.00 2.29
394 395 8.593679 TCTAAGTTTGTGATTTGAGATCCTGTA 58.406 33.333 0.00 0.00 0.00 2.74
395 396 7.453393 TCTAAGTTTGTGATTTGAGATCCTGT 58.547 34.615 0.00 0.00 0.00 4.00
396 397 7.912056 TCTAAGTTTGTGATTTGAGATCCTG 57.088 36.000 0.00 0.00 0.00 3.86
397 398 8.924511 TTTCTAAGTTTGTGATTTGAGATCCT 57.075 30.769 0.00 0.00 0.00 3.24
398 399 9.003658 TCTTTCTAAGTTTGTGATTTGAGATCC 57.996 33.333 0.00 0.00 0.00 3.36
399 400 9.818796 GTCTTTCTAAGTTTGTGATTTGAGATC 57.181 33.333 0.00 0.00 0.00 2.75
400 401 8.787852 GGTCTTTCTAAGTTTGTGATTTGAGAT 58.212 33.333 0.00 0.00 0.00 2.75
401 402 7.228706 GGGTCTTTCTAAGTTTGTGATTTGAGA 59.771 37.037 0.00 0.00 0.00 3.27
402 403 7.013274 TGGGTCTTTCTAAGTTTGTGATTTGAG 59.987 37.037 0.00 0.00 0.00 3.02
403 404 6.831353 TGGGTCTTTCTAAGTTTGTGATTTGA 59.169 34.615 0.00 0.00 0.00 2.69
404 405 7.038154 TGGGTCTTTCTAAGTTTGTGATTTG 57.962 36.000 0.00 0.00 0.00 2.32
405 406 6.265422 CCTGGGTCTTTCTAAGTTTGTGATTT 59.735 38.462 0.00 0.00 0.00 2.17
406 407 5.770162 CCTGGGTCTTTCTAAGTTTGTGATT 59.230 40.000 0.00 0.00 0.00 2.57
407 408 5.073144 TCCTGGGTCTTTCTAAGTTTGTGAT 59.927 40.000 0.00 0.00 0.00 3.06
408 409 4.410883 TCCTGGGTCTTTCTAAGTTTGTGA 59.589 41.667 0.00 0.00 0.00 3.58
409 410 4.714632 TCCTGGGTCTTTCTAAGTTTGTG 58.285 43.478 0.00 0.00 0.00 3.33
410 411 5.132144 TCTTCCTGGGTCTTTCTAAGTTTGT 59.868 40.000 0.00 0.00 0.00 2.83
411 412 5.621193 TCTTCCTGGGTCTTTCTAAGTTTG 58.379 41.667 0.00 0.00 0.00 2.93
412 413 5.906772 TCTTCCTGGGTCTTTCTAAGTTT 57.093 39.130 0.00 0.00 0.00 2.66
413 414 5.906772 TTCTTCCTGGGTCTTTCTAAGTT 57.093 39.130 0.00 0.00 0.00 2.66
414 415 5.906772 TTTCTTCCTGGGTCTTTCTAAGT 57.093 39.130 0.00 0.00 0.00 2.24
415 416 7.883311 TGTAATTTCTTCCTGGGTCTTTCTAAG 59.117 37.037 0.00 0.00 0.00 2.18
416 417 7.751646 TGTAATTTCTTCCTGGGTCTTTCTAA 58.248 34.615 0.00 0.00 0.00 2.10
417 418 7.324388 TGTAATTTCTTCCTGGGTCTTTCTA 57.676 36.000 0.00 0.00 0.00 2.10
418 419 6.200878 TGTAATTTCTTCCTGGGTCTTTCT 57.799 37.500 0.00 0.00 0.00 2.52
419 420 6.490381 ACTTGTAATTTCTTCCTGGGTCTTTC 59.510 38.462 0.00 0.00 0.00 2.62
420 421 6.373759 ACTTGTAATTTCTTCCTGGGTCTTT 58.626 36.000 0.00 0.00 0.00 2.52
421 422 5.953571 ACTTGTAATTTCTTCCTGGGTCTT 58.046 37.500 0.00 0.00 0.00 3.01
422 423 5.584551 ACTTGTAATTTCTTCCTGGGTCT 57.415 39.130 0.00 0.00 0.00 3.85
423 424 6.650427 AAACTTGTAATTTCTTCCTGGGTC 57.350 37.500 0.00 0.00 0.00 4.46
424 425 7.064229 TGTAAACTTGTAATTTCTTCCTGGGT 58.936 34.615 0.00 0.00 0.00 4.51
425 426 7.519032 TGTAAACTTGTAATTTCTTCCTGGG 57.481 36.000 0.00 0.00 0.00 4.45
426 427 8.797266 GTTGTAAACTTGTAATTTCTTCCTGG 57.203 34.615 0.00 0.00 45.32 4.45
486 487 2.260481 GAAGACAAGTACAGCGGTAGC 58.740 52.381 0.00 0.00 45.58 3.58
487 488 3.570926 TGAAGACAAGTACAGCGGTAG 57.429 47.619 0.00 0.00 0.00 3.18
488 489 4.530710 AATGAAGACAAGTACAGCGGTA 57.469 40.909 0.00 0.00 0.00 4.02
489 490 3.402628 AATGAAGACAAGTACAGCGGT 57.597 42.857 0.00 0.00 0.00 5.68
490 491 3.997021 AGAAATGAAGACAAGTACAGCGG 59.003 43.478 0.00 0.00 0.00 5.52
491 492 4.092091 GGAGAAATGAAGACAAGTACAGCG 59.908 45.833 0.00 0.00 0.00 5.18
492 493 4.997395 TGGAGAAATGAAGACAAGTACAGC 59.003 41.667 0.00 0.00 0.00 4.40
493 494 5.409826 GGTGGAGAAATGAAGACAAGTACAG 59.590 44.000 0.00 0.00 0.00 2.74
494 495 5.163248 TGGTGGAGAAATGAAGACAAGTACA 60.163 40.000 0.00 0.00 0.00 2.90
495 496 5.305585 TGGTGGAGAAATGAAGACAAGTAC 58.694 41.667 0.00 0.00 0.00 2.73
496 497 5.560722 TGGTGGAGAAATGAAGACAAGTA 57.439 39.130 0.00 0.00 0.00 2.24
497 498 4.437682 TGGTGGAGAAATGAAGACAAGT 57.562 40.909 0.00 0.00 0.00 3.16
498 499 6.656693 AGTTATGGTGGAGAAATGAAGACAAG 59.343 38.462 0.00 0.00 0.00 3.16
499 500 6.542821 AGTTATGGTGGAGAAATGAAGACAA 58.457 36.000 0.00 0.00 0.00 3.18
500 501 6.013379 AGAGTTATGGTGGAGAAATGAAGACA 60.013 38.462 0.00 0.00 0.00 3.41
501 502 6.410540 AGAGTTATGGTGGAGAAATGAAGAC 58.589 40.000 0.00 0.00 0.00 3.01
502 503 6.627087 AGAGTTATGGTGGAGAAATGAAGA 57.373 37.500 0.00 0.00 0.00 2.87
503 504 6.404074 GCAAGAGTTATGGTGGAGAAATGAAG 60.404 42.308 0.00 0.00 0.00 3.02
504 505 5.415701 GCAAGAGTTATGGTGGAGAAATGAA 59.584 40.000 0.00 0.00 0.00 2.57
505 506 4.943705 GCAAGAGTTATGGTGGAGAAATGA 59.056 41.667 0.00 0.00 0.00 2.57
506 507 4.201851 CGCAAGAGTTATGGTGGAGAAATG 60.202 45.833 0.00 0.00 43.02 2.32
507 508 3.941483 CGCAAGAGTTATGGTGGAGAAAT 59.059 43.478 0.00 0.00 43.02 2.17
508 509 3.334691 CGCAAGAGTTATGGTGGAGAAA 58.665 45.455 0.00 0.00 43.02 2.52
509 510 2.354704 CCGCAAGAGTTATGGTGGAGAA 60.355 50.000 0.00 0.00 43.02 2.87
510 511 1.207089 CCGCAAGAGTTATGGTGGAGA 59.793 52.381 0.00 0.00 43.02 3.71
511 512 1.656652 CCGCAAGAGTTATGGTGGAG 58.343 55.000 0.00 0.00 43.02 3.86
512 513 0.251916 CCCGCAAGAGTTATGGTGGA 59.748 55.000 0.00 0.00 43.02 4.02
513 514 0.251916 TCCCGCAAGAGTTATGGTGG 59.748 55.000 0.00 0.00 43.02 4.61
514 515 1.207089 TCTCCCGCAAGAGTTATGGTG 59.793 52.381 0.31 0.00 43.02 4.17
515 516 1.482593 CTCTCCCGCAAGAGTTATGGT 59.517 52.381 4.58 0.00 38.38 3.55
516 517 2.231215 CTCTCCCGCAAGAGTTATGG 57.769 55.000 4.58 0.00 38.38 2.74
522 523 1.464734 TCTGTACTCTCCCGCAAGAG 58.535 55.000 9.91 9.91 46.78 2.85
523 524 1.919240 TTCTGTACTCTCCCGCAAGA 58.081 50.000 0.00 0.00 43.02 3.02
524 525 2.093973 ACATTCTGTACTCTCCCGCAAG 60.094 50.000 0.00 0.00 0.00 4.01
525 526 1.899814 ACATTCTGTACTCTCCCGCAA 59.100 47.619 0.00 0.00 0.00 4.85
526 527 1.557099 ACATTCTGTACTCTCCCGCA 58.443 50.000 0.00 0.00 0.00 5.69
527 528 4.277672 TGTATACATTCTGTACTCTCCCGC 59.722 45.833 0.08 0.00 35.42 6.13
528 529 6.382608 CATGTATACATTCTGTACTCTCCCG 58.617 44.000 15.85 0.00 35.42 5.14
529 530 6.159988 GCATGTATACATTCTGTACTCTCCC 58.840 44.000 15.85 0.00 35.42 4.30
530 531 6.749139 TGCATGTATACATTCTGTACTCTCC 58.251 40.000 15.85 0.00 35.42 3.71
531 532 7.869937 ACATGCATGTATACATTCTGTACTCTC 59.130 37.037 30.50 0.00 39.68 3.20
532 533 7.730084 ACATGCATGTATACATTCTGTACTCT 58.270 34.615 30.50 0.00 39.68 3.24
533 534 7.953158 ACATGCATGTATACATTCTGTACTC 57.047 36.000 30.50 0.00 39.68 2.59
534 535 8.737168 AAACATGCATGTATACATTCTGTACT 57.263 30.769 31.55 8.85 40.80 2.73
537 538 9.787532 GTTTAAACATGCATGTATACATTCTGT 57.212 29.630 31.55 15.05 40.80 3.41
538 539 9.236691 GGTTTAAACATGCATGTATACATTCTG 57.763 33.333 31.55 14.49 40.80 3.02
539 540 9.189156 AGGTTTAAACATGCATGTATACATTCT 57.811 29.630 31.55 19.48 40.80 2.40
540 541 9.801873 AAGGTTTAAACATGCATGTATACATTC 57.198 29.630 31.55 17.78 40.80 2.67
541 542 9.585099 CAAGGTTTAAACATGCATGTATACATT 57.415 29.630 31.55 23.77 40.80 2.71
542 543 8.196771 CCAAGGTTTAAACATGCATGTATACAT 58.803 33.333 31.55 20.09 40.80 2.29
543 544 7.363355 CCCAAGGTTTAAACATGCATGTATACA 60.363 37.037 31.55 14.25 40.80 2.29
544 545 6.978080 CCCAAGGTTTAAACATGCATGTATAC 59.022 38.462 31.55 23.35 40.80 1.47
545 546 6.665680 ACCCAAGGTTTAAACATGCATGTATA 59.334 34.615 31.55 17.02 33.66 1.47
546 547 5.483583 ACCCAAGGTTTAAACATGCATGTAT 59.516 36.000 31.55 18.64 33.66 2.29
547 548 4.835615 ACCCAAGGTTTAAACATGCATGTA 59.164 37.500 31.55 15.43 33.66 2.29
548 549 3.645687 ACCCAAGGTTTAAACATGCATGT 59.354 39.130 26.61 26.61 35.71 3.21
549 550 4.270245 ACCCAAGGTTTAAACATGCATG 57.730 40.909 25.09 25.09 27.29 4.06
550 551 4.972751 AACCCAAGGTTTAAACATGCAT 57.027 36.364 19.57 0.00 44.33 3.96
551 552 5.871396 TTAACCCAAGGTTTAAACATGCA 57.129 34.783 19.57 0.00 44.33 3.96
552 553 9.093970 GATAATTAACCCAAGGTTTAAACATGC 57.906 33.333 19.57 3.03 44.33 4.06
553 554 9.594478 GGATAATTAACCCAAGGTTTAAACATG 57.406 33.333 19.57 16.18 44.33 3.21
563 564 5.425217 AGGCAAAAGGATAATTAACCCAAGG 59.575 40.000 8.09 0.00 0.00 3.61
609 610 0.679640 TTCGCATCCGAGGGCAAAAT 60.680 50.000 0.00 0.00 45.35 1.82
620 621 1.089920 ACTGAGCACAATTCGCATCC 58.910 50.000 0.00 0.00 0.00 3.51
789 790 0.106708 TCTGCTCAACGGCTCTTTGT 59.893 50.000 0.00 0.00 0.00 2.83
864 865 2.167662 TGGTCATTGTCGTGCTCTCTA 58.832 47.619 0.00 0.00 0.00 2.43
875 876 0.904649 TCTCTCGCCATGGTCATTGT 59.095 50.000 14.67 0.00 0.00 2.71
878 879 1.039068 CTCTCTCTCGCCATGGTCAT 58.961 55.000 14.67 0.00 0.00 3.06
889 890 2.205074 CGTGCTCTCTCTCTCTCTCTC 58.795 57.143 0.00 0.00 0.00 3.20
890 891 1.134401 CCGTGCTCTCTCTCTCTCTCT 60.134 57.143 0.00 0.00 0.00 3.10
891 892 1.299541 CCGTGCTCTCTCTCTCTCTC 58.700 60.000 0.00 0.00 0.00 3.20
892 893 0.748005 GCCGTGCTCTCTCTCTCTCT 60.748 60.000 0.00 0.00 0.00 3.10
1152 1159 2.706190 CCCGATTCTTACCCCATTCTCT 59.294 50.000 0.00 0.00 0.00 3.10
1722 1731 1.696336 ACAGAAAGGCAGAGCAGAGAA 59.304 47.619 0.00 0.00 0.00 2.87
1763 1775 2.898705 CTCTACGCTCTGAATTTGGCT 58.101 47.619 0.00 0.00 0.00 4.75
1808 1820 2.378038 GGCCTAATTGGATGCAGTTGA 58.622 47.619 5.19 0.00 38.35 3.18
2184 2197 1.251527 AAACACCACAAACCCACGCA 61.252 50.000 0.00 0.00 0.00 5.24
2298 2315 6.251376 GCAAACATTCACGGTCTCATTATTTC 59.749 38.462 0.00 0.00 0.00 2.17
2304 2321 2.226437 GTGCAAACATTCACGGTCTCAT 59.774 45.455 0.00 0.00 0.00 2.90
2508 2525 2.421619 GTGAGAAGCCCTCTGTTTCAG 58.578 52.381 5.47 0.00 42.44 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.