AutoCloner

Multiple sequence alignment - TraesCS5A01G016900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G016900	chr5A	100.000	2198	0	0	1	2198	12679826	12677629	0.000000e+00	4060.0
1	TraesCS5A01G016900	chr5A	89.104	413	38	5	1778	2184	154825162	154824751	7.000000e-140	507.0
2	TraesCS5A01G016900	chr5A	88.732	426	23	9	1776	2198	203817	203414	4.210000e-137	497.0
3	TraesCS5A01G016900	chr4A	91.357	2233	129	22	2	2198	415622124	415624328	0.000000e+00	2996.0
4	TraesCS5A01G016900	chr3D	86.260	917	84	21	1299	2198	400420660	400419769	0.000000e+00	957.0
5	TraesCS5A01G016900	chr4D	86.226	922	78	26	1299	2198	440276764	440277658	0.000000e+00	953.0
6	TraesCS5A01G016900	chr4D	86.772	635	52	9	1567	2198	234847133	234846528	0.000000e+00	678.0
7	TraesCS5A01G016900	chr4D	86.667	255	16	8	913	1167	45700824	45700588	1.290000e-67	267.0
8	TraesCS5A01G016900	chr4D	97.436	39	0	1	1164	1202	45700566	45700529	5.070000e-07	65.8
9	TraesCS5A01G016900	chr3B	88.345	695	63	6	5	698	155850042	155849365	0.000000e+00	819.0
10	TraesCS5A01G016900	chr3B	87.588	427	48	3	1776	2198	614356927	614356502	7.050000e-135	490.0
11	TraesCS5A01G016900	chr3B	91.291	333	25	2	366	698	155849286	155848958	3.330000e-123	451.0
12	TraesCS5A01G016900	chr3B	93.478	92	6	0	1210	1301	293785358	293785449	1.060000e-28	137.0
13	TraesCS5A01G016900	chr3B	93.478	92	6	0	1210	1301	590306790	590306881	1.060000e-28	137.0
14	TraesCS5A01G016900	chr3B	92.632	95	6	1	1210	1304	599220079	599219986	3.810000e-28	135.0
15	TraesCS5A01G016900	chr3B	92.391	92	7	0	1210	1301	285007171	285007262	4.920000e-27	132.0
16	TraesCS5A01G016900	chr2D	91.611	596	40	7	1210	1797	544284643	544285236	0.000000e+00	815.0
17	TraesCS5A01G016900	chr5B	87.708	602	39	21	1210	1800	430296580	430296003	0.000000e+00	669.0
18	TraesCS5A01G016900	chr1B	87.674	503	51	7	1294	1786	123686967	123686466	1.890000e-160	575.0
19	TraesCS5A01G016900	chr1B	92.632	95	7	0	1210	1304	77045740	77045646	1.060000e-28	137.0
20	TraesCS5A01G016900	chr1B	92.424	66	5	0	1239	1304	480015031	480015096	6.460000e-16	95.3
21	TraesCS5A01G016900	chr1B	100.000	29	0	0	599	627	323440232	323440204	1.000000e-03	54.7
22	TraesCS5A01G016900	chr1A	90.291	412	35	4	1778	2184	289174803	289174392	3.210000e-148	534.0
23	TraesCS5A01G016900	chr6B	87.905	463	42	9	1347	1797	62541041	62541501	1.160000e-147	532.0
24	TraesCS5A01G016900	chr7B	81.846	661	92	22	1299	1940	493448884	493449535	4.160000e-147	531.0
25	TraesCS5A01G016900	chr7B	92.632	95	7	0	1210	1304	262864036	262863942	1.060000e-28	137.0
26	TraesCS5A01G016900	chr7B	92.105	38	3	0	590	627	596471776	596471813	1.000000e-03	54.7
27	TraesCS5A01G016900	chr2B	86.083	503	52	10	1299	1786	458491571	458491072	1.930000e-145	525.0
28	TraesCS5A01G016900	chr2B	88.927	289	32	0	146	434	84667533	84667245	7.460000e-95	357.0
29	TraesCS5A01G016900	chr6A	89.019	428	20	11	1776	2198	279826830	279827235	2.520000e-139	505.0
30	TraesCS5A01G016900	chr6A	87.588	427	47	4	1778	2198	224473422	224472996	7.050000e-135	490.0
31	TraesCS5A01G016900	chr4B	86.651	427	52	4	1776	2198	217074161	217073736	3.300000e-128	468.0
32	TraesCS5A01G016900	chr4B	86.486	259	17	8	909	1167	66173736	66173496	3.600000e-68	268.0
33	TraesCS5A01G016900	chr4B	97.436	39	0	1	1164	1202	66173474	66173437	5.070000e-07	65.8
34	TraesCS5A01G016900	chr2A	90.816	294	23	3	1909	2198	125802900	125803193	7.360000e-105	390.0
35	TraesCS5A01G016900	chr5D	90.476	294	24	3	1909	2198	299113589	299113882	3.420000e-103	385.0
36	TraesCS5A01G016900	chr6D	83.799	358	37	15	1299	1647	191899391	191899736	9.790000e-84	320.0
37	TraesCS5A01G016900	chr6D	86.207	58	7	1	600	657	390714712	390714656	6.550000e-06	62.1
38	TraesCS5A01G016900	chr7D	86.525	282	27	8	1299	1571	370397618	370397897	1.280000e-77	300.0
39	TraesCS5A01G016900	chr1D	85.714	280	31	6	1299	1570	290504266	290504544	9.930000e-74	287.0
40	TraesCS5A01G016900	chr1D	89.474	95	10	0	1210	1304	196118046	196118140	1.070000e-23	121.0
41	TraesCS5A01G016900	chr7A	92.308	91	6	1	1215	1304	425086011	425086101	6.370000e-26	128.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G016900	chr5A	12677629	12679826	2197	True	4060	4060	100.000	1	2198	1	chr5A.!!$R2	2197
1	TraesCS5A01G016900	chr4A	415622124	415624328	2204	False	2996	2996	91.357	2	2198	1	chr4A.!!$F1	2196
2	TraesCS5A01G016900	chr3D	400419769	400420660	891	True	957	957	86.260	1299	2198	1	chr3D.!!$R1	899
3	TraesCS5A01G016900	chr4D	440276764	440277658	894	False	953	953	86.226	1299	2198	1	chr4D.!!$F1	899
4	TraesCS5A01G016900	chr4D	234846528	234847133	605	True	678	678	86.772	1567	2198	1	chr4D.!!$R1	631
5	TraesCS5A01G016900	chr3B	155848958	155850042	1084	True	635	819	89.818	5	698	2	chr3B.!!$R3	693
6	TraesCS5A01G016900	chr2D	544284643	544285236	593	False	815	815	91.611	1210	1797	1	chr2D.!!$F1	587
7	TraesCS5A01G016900	chr5B	430296003	430296580	577	True	669	669	87.708	1210	1800	1	chr5B.!!$R1	590
8	TraesCS5A01G016900	chr1B	123686466	123686967	501	True	575	575	87.674	1294	1786	1	chr1B.!!$R2	492
9	TraesCS5A01G016900	chr7B	493448884	493449535	651	False	531	531	81.846	1299	1940	1	chr7B.!!$F1	641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
704	1113	0.040157	TCTGCACAAAACTGATGCGC	60.04	50.0	0.0	0.0	42.44	6.09	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1925	2387	0.031994	AAAACCGCACTGCATTGGAC	59.968	50.0	6.16	0.0	0.0	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	46	0.045623	TGGCCTAGATCCTCCCCAAA	59.954	55.000	3.32	0.00	0.00	3.28
70	71	1.152652	GGATCCGAGGCTCTCTGGA	60.153	63.158	13.50	12.30	37.49	3.86
82	83	3.603532	GCTCTCTGGATTCAATGTGTGA	58.396	45.455	0.00	0.00	0.00	3.58
163	164	1.920835	GCCCCTGACCTCAACCTCT	60.921	63.158	0.00	0.00	0.00	3.69
177	178	1.984570	CCTCTGCCTCGTTCCTCCA	60.985	63.158	0.00	0.00	0.00	3.86
219	220	1.147824	CGCAATGGATCCAGCTCCT	59.852	57.895	21.33	0.00	36.20	3.69
235	236	2.688477	CTCCTCTGCCCCTATTTCTCT	58.312	52.381	0.00	0.00	0.00	3.10
423	832	3.366719	GCCTACCGTTCAATCGTAGTAC	58.633	50.000	0.00	0.00	0.00	2.73
448	857	2.439701	CCAGGAGTCGTCGCCCTA	60.440	66.667	0.00	0.00	33.97	3.53
451	860	2.439883	GGAGTCGTCGCCCTACCT	60.440	66.667	0.00	0.00	0.00	3.08
462	871	2.091720	TCGCCCTACCTGTTGTATCCTA	60.092	50.000	0.00	0.00	0.00	2.94
464	873	4.084287	CGCCCTACCTGTTGTATCCTATA	58.916	47.826	0.00	0.00	0.00	1.31
534	943	2.125225	AGTTCCCACCTCCTCCCC	59.875	66.667	0.00	0.00	0.00	4.81
557	966	2.431683	GCACTCCTTGTGGCCTCA	59.568	61.111	3.32	2.96	46.27	3.86
572	981	3.635268	CTCAGCTGGCTTCCCCACC	62.635	68.421	15.13	0.00	39.18	4.61
681	1090	5.127356	GTCAGCCCTTTGAGTGTAGTATACT	59.873	44.000	10.87	10.87	43.54	2.12
698	1107	5.934625	AGTATACTTCCTCTGCACAAAACTG	59.065	40.000	0.00	0.00	0.00	3.16
699	1108	3.281727	ACTTCCTCTGCACAAAACTGA	57.718	42.857	0.00	0.00	0.00	3.41
700	1109	3.825328	ACTTCCTCTGCACAAAACTGAT	58.175	40.909	0.00	0.00	0.00	2.90
701	1110	3.567164	ACTTCCTCTGCACAAAACTGATG	59.433	43.478	0.00	0.00	0.00	3.07
702	1111	1.881973	TCCTCTGCACAAAACTGATGC	59.118	47.619	0.00	0.00	39.88	3.91
703	1112	1.400629	CCTCTGCACAAAACTGATGCG	60.401	52.381	0.00	0.00	42.44	4.73
704	1113	0.040157	TCTGCACAAAACTGATGCGC	60.040	50.000	0.00	0.00	42.44	6.09
732	1141	1.678970	GGCCATTCCAACGCTTCCT	60.679	57.895	0.00	0.00	34.01	3.36
767	1176	0.165944	CGTGCGTGATTTGGAACCTC	59.834	55.000	0.00	0.00	0.00	3.85
768	1177	1.523758	GTGCGTGATTTGGAACCTCT	58.476	50.000	0.00	0.00	0.00	3.69
773	1182	2.229792	GTGATTTGGAACCTCTGCACA	58.770	47.619	0.00	0.00	0.00	4.57
817	1226	4.742201	TCTCGCGTGGGAGCTTGC	62.742	66.667	5.77	0.00	33.98	4.01
880	1289	1.543358	AGCTAGCTTGGCTTTGCTTTC	59.457	47.619	12.68	0.00	41.58	2.62
911	1320	2.938451	TGAATCCATCGTTGATGCACTC	59.062	45.455	0.00	0.00	38.59	3.51
935	1344	1.238439	CGTTCTGCAGGTTGGACAAT	58.762	50.000	15.13	0.00	0.00	2.71
936	1345	2.422597	CGTTCTGCAGGTTGGACAATA	58.577	47.619	15.13	0.00	0.00	1.90
955	1364	0.320247	AGAGCACTGACTTCAAGGCG	60.320	55.000	0.00	0.00	32.37	5.52
991	1400	1.399791	GGCAAGAAAGAAGCAGATCCG	59.600	52.381	0.00	0.00	0.00	4.18
992	1401	2.350522	GCAAGAAAGAAGCAGATCCGA	58.649	47.619	0.00	0.00	0.00	4.55
1004	1413	0.109913	AGATCCGATGCATGCATGGT	59.890	50.000	36.73	20.27	36.70	3.55
1008	1417	1.065109	CGATGCATGCATGGTGGTG	59.935	57.895	36.73	15.04	36.70	4.17
1017	1426	2.034066	ATGGTGGTGAAGTGCCCG	59.966	61.111	0.00	0.00	0.00	6.13
1064	1473	4.492955	GCTCCTCGCTCTCAAGTG	57.507	61.111	0.00	0.00	35.14	3.16
1107	1516	1.136984	CCGTTTCCTCCTCGAGTCG	59.863	63.158	12.31	6.09	0.00	4.18
1114	1523	0.107800	CCTCCTCGAGTCGTACCTCA	60.108	60.000	13.12	0.00	0.00	3.86
1122	1531	3.504906	TCGAGTCGTACCTCAAGAACAAT	59.495	43.478	13.12	0.00	0.00	2.71
1189	1623	4.087892	CGAGGTGGAGTGCCCCTG	62.088	72.222	0.00	0.00	35.68	4.45
1229	1663	1.666700	TGTCTGTGTTTTGCGTGGTAC	59.333	47.619	0.00	0.00	0.00	3.34
1315	1749	6.650807	TGTTGTATCCAAGTGCAAAAACAAAA	59.349	30.769	0.00	0.00	0.00	2.44
1341	1776	5.162925	TGGGAGAAAGTTAATTGGAAAGGGA	60.163	40.000	0.00	0.00	0.00	4.20
1488	1933	9.410556	CGATAAAAGAAAAAGAATGTGGTTCAT	57.589	29.630	0.00	0.00	39.39	2.57
1537	1982	1.276138	TCGACATGAAGTGCACTCCAT	59.724	47.619	21.95	17.64	0.00	3.41
1550	1995	2.918131	GCACTCCATCTTGTTTGCGAAC	60.918	50.000	10.09	10.09	36.29	3.95
1560	2005	4.271533	TCTTGTTTGCGAACATTTACGTCT	59.728	37.500	20.12	0.00	44.71	4.18
1614	2066	1.335810	CATGCAGTGCACTTGTCTGTT	59.664	47.619	22.44	0.00	43.04	3.16
1647	2099	9.623000	AGTGTGGTTTTTAGTCTAAATAAGTGT	57.377	29.630	5.88	0.00	0.00	3.55
1674	2126	3.154710	TCTGTCTGATGTTGTACGACCT	58.845	45.455	10.83	0.30	0.00	3.85
1680	2132	5.867716	GTCTGATGTTGTACGACCTGTTTAT	59.132	40.000	10.83	0.00	0.00	1.40
1687	2139	5.726980	TGTACGACCTGTTTATGGTAGTT	57.273	39.130	4.22	0.00	42.08	2.24
1828	2289	2.496111	TGTGGTTCATTTACACCCGAC	58.504	47.619	0.00	0.00	34.33	4.79
1901	2363	4.333690	AGAAATCATGCAGTTCTCTTGCT	58.666	39.130	0.00	0.00	34.16	3.91
1935	2397	3.792716	GGTTTTCCGTCCAATGCAG	57.207	52.632	0.00	0.00	0.00	4.41
1936	2398	0.958822	GGTTTTCCGTCCAATGCAGT	59.041	50.000	0.00	0.00	0.00	4.40
1937	2399	1.335872	GGTTTTCCGTCCAATGCAGTG	60.336	52.381	7.29	7.29	0.00	3.66
1938	2400	0.313672	TTTTCCGTCCAATGCAGTGC	59.686	50.000	9.04	8.58	0.00	4.40
1939	2401	1.851021	TTTCCGTCCAATGCAGTGCG	61.851	55.000	9.04	7.92	0.00	5.34
1940	2402	3.803082	CCGTCCAATGCAGTGCGG	61.803	66.667	16.62	16.62	0.00	5.69
1941	2403	3.049674	CGTCCAATGCAGTGCGGT	61.050	61.111	9.04	0.00	0.00	5.68
1942	2404	2.616330	CGTCCAATGCAGTGCGGTT	61.616	57.895	9.04	5.14	0.00	4.44
1943	2405	1.659794	GTCCAATGCAGTGCGGTTT	59.340	52.632	9.04	1.10	0.00	3.27
1944	2406	0.031994	GTCCAATGCAGTGCGGTTTT	59.968	50.000	9.04	0.00	0.00	2.43
1945	2407	0.313672	TCCAATGCAGTGCGGTTTTC	59.686	50.000	9.04	0.00	0.00	2.29
1946	2408	0.667184	CCAATGCAGTGCGGTTTTCC	60.667	55.000	9.04	0.00	0.00	3.13
1971	2433	1.032014	ATGCAGTGCGGTTTTCAGTT	58.968	45.000	11.20	0.00	0.00	3.16
2004	2466	0.321210	ATGTCGATTTGGGTGTCGCA	60.321	50.000	0.00	0.00	37.74	5.10
2040	2506	8.552865	GTCCGCATTTTGGTAAATTTAAAACTT	58.447	29.630	0.00	0.00	31.63	2.66
2101	2569	6.422701	TGAAAAAGTTGTGTCTCGTCGATATT	59.577	34.615	0.00	0.00	0.00	1.28
2156	2624	4.201901	ACGACCGGTTTGTAAAAATTTCGT	60.202	37.500	9.42	5.85	0.00	3.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	71	3.606846	CGCGACAAAGTCACACATTGAAT	60.607	43.478	0.00	0.00	35.39	2.57
163	164	1.827399	GAAGGTGGAGGAACGAGGCA	61.827	60.000	0.00	0.00	0.00	4.75
177	178	3.036429	GCGGATCTGGCCTGAAGGT	62.036	63.158	17.04	0.00	37.57	3.50
202	203	0.473326	AGAGGAGCTGGATCCATTGC	59.527	55.000	16.63	16.47	42.26	3.56
219	220	1.139058	GCGAAGAGAAATAGGGGCAGA	59.861	52.381	0.00	0.00	0.00	4.26
423	832	2.303549	GACGACTCCTGGCTGGGATG	62.304	65.000	10.79	4.30	34.56	3.51
462	871	8.773404	ACAAAGCGAACTACAGAGTTAATTAT	57.227	30.769	0.00	0.00	46.23	1.28
464	873	8.656849	CATACAAAGCGAACTACAGAGTTAATT	58.343	33.333	0.00	0.00	46.23	1.40
475	884	4.982295	CCATCGATCATACAAAGCGAACTA	59.018	41.667	0.00	0.00	34.46	2.24
534	943	2.738521	CACAAGGAGTGCCGTCGG	60.739	66.667	6.99	6.99	42.15	4.79
572	981	3.635510	CGGGAGGGAAAGAGGAGG	58.364	66.667	0.00	0.00	0.00	4.30
681	1090	2.294233	GCATCAGTTTTGTGCAGAGGAA	59.706	45.455	0.00	0.00	38.68	3.36
745	1154	1.532007	GGTTCCAAATCACGCACGTAA	59.468	47.619	0.00	0.00	0.00	3.18
747	1156	0.534203	AGGTTCCAAATCACGCACGT	60.534	50.000	0.00	0.00	0.00	4.49
748	1157	0.165944	GAGGTTCCAAATCACGCACG	59.834	55.000	0.00	0.00	0.00	5.34
767	1176	2.782045	CGTCGCGATCTGTGTGCAG	61.782	63.158	14.06	0.00	43.87	4.41
768	1177	2.804931	CGTCGCGATCTGTGTGCA	60.805	61.111	14.06	0.00	0.00	4.57
835	1244	0.107456	GTGATCCATCCATCACGCCT	59.893	55.000	0.00	0.00	42.48	5.52
880	1289	3.801698	ACGATGGATTCATGAGGTTCAG	58.198	45.455	0.00	0.00	32.98	3.02
935	1344	1.067565	CGCCTTGAAGTCAGTGCTCTA	60.068	52.381	0.00	0.00	0.00	2.43
936	1345	0.320247	CGCCTTGAAGTCAGTGCTCT	60.320	55.000	0.00	0.00	0.00	4.09
955	1364	2.357517	CCGCTCTCCACCACACAC	60.358	66.667	0.00	0.00	0.00	3.82
991	1400	0.818938	TTCACCACCATGCATGCATC	59.181	50.000	30.07	0.00	33.90	3.91
992	1401	0.821517	CTTCACCACCATGCATGCAT	59.178	50.000	27.46	27.46	37.08	3.96
1004	1413	4.263572	CCACCGGGCACTTCACCA	62.264	66.667	6.32	0.00	0.00	4.17
1008	1417	2.978010	CACACCACCGGGCACTTC	60.978	66.667	6.32	0.00	37.90	3.01
1056	1465	2.741092	GTGTCGGGGCACTTGAGA	59.259	61.111	0.00	0.00	36.51	3.27
1081	1490	2.092882	GGAGGAAACGGTCGAAGCG	61.093	63.158	0.00	0.00	45.69	4.68
1092	1501	1.004044	AGGTACGACTCGAGGAGGAAA	59.996	52.381	18.41	0.00	33.35	3.13
1107	1516	3.927142	CCGAGTCATTGTTCTTGAGGTAC	59.073	47.826	0.00	0.00	0.00	3.34
1114	1523	2.069273	CTTCGCCGAGTCATTGTTCTT	58.931	47.619	0.00	0.00	0.00	2.52
1122	1531	2.338620	CACCACTTCGCCGAGTCA	59.661	61.111	0.00	0.00	0.00	3.41
1173	1607	4.416738	GCAGGGGCACTCCACCTC	62.417	72.222	0.00	0.00	35.98	3.85
1194	1628	2.427453	ACAGACAACGATGTAGCCCTAG	59.573	50.000	0.00	0.00	40.74	3.02
1196	1630	1.066858	CACAGACAACGATGTAGCCCT	60.067	52.381	0.00	0.00	40.74	5.19
1315	1749	6.213397	CCCTTTCCAATTAACTTTCTCCCAAT	59.787	38.462	0.00	0.00	0.00	3.16
1341	1776	5.123502	CAGAGTGAGCTGCATAAAAAGTCAT	59.876	40.000	1.02	0.00	0.00	3.06
1488	1933	7.825331	TGGTGAACCACAATACTATGAAAAA	57.175	32.000	0.00	0.00	42.01	1.94
1614	2066	8.740123	TTAGACTAAAAACCACACTTCATTGA	57.260	30.769	0.00	0.00	0.00	2.57
1647	2099	4.509970	CGTACAACATCAGACAGAAAACCA	59.490	41.667	0.00	0.00	0.00	3.67
1674	2126	5.697633	GTGAACCTCGAAACTACCATAAACA	59.302	40.000	0.00	0.00	0.00	2.83
1680	2132	4.411256	AAAGTGAACCTCGAAACTACCA	57.589	40.909	0.00	0.00	0.00	3.25
1687	2139	8.717821	CAATACTTATGAAAAGTGAACCTCGAA	58.282	33.333	0.74	0.00	0.00	3.71
1743	2196	6.073112	CGTAAATTTTCCTAAACGAGGTGGAA	60.073	38.462	0.00	0.00	46.76	3.53
1884	2346	1.001293	ACGAGCAAGAGAACTGCATGA	59.999	47.619	0.00	0.00	0.00	3.07
1901	2363	0.037697	AACCGCACTGCATTAGACGA	60.038	50.000	1.11	0.00	33.44	4.20
1925	2387	0.031994	AAAACCGCACTGCATTGGAC	59.968	50.000	6.16	0.00	0.00	4.02
1926	2388	0.313672	GAAAACCGCACTGCATTGGA	59.686	50.000	6.16	0.00	0.00	3.53
1927	2389	0.667184	GGAAAACCGCACTGCATTGG	60.667	55.000	6.16	0.00	0.00	3.16
1928	2390	1.003262	CGGAAAACCGCACTGCATTG	61.003	55.000	0.00	0.00	0.00	2.82
1929	2391	1.285641	CGGAAAACCGCACTGCATT	59.714	52.632	1.11	0.00	0.00	3.56
1930	2392	1.852067	GACGGAAAACCGCACTGCAT	61.852	55.000	8.59	0.00	36.58	3.96
1931	2393	2.515057	ACGGAAAACCGCACTGCA	60.515	55.556	8.59	0.00	36.58	4.41
1932	2394	2.251371	GACGGAAAACCGCACTGC	59.749	61.111	8.59	0.00	36.58	4.40
1933	2395	1.440938	TTGGACGGAAAACCGCACTG	61.441	55.000	8.59	0.00	36.58	3.66
1934	2396	0.536460	ATTGGACGGAAAACCGCACT	60.536	50.000	8.59	0.00	36.58	4.40
1935	2397	0.386731	CATTGGACGGAAAACCGCAC	60.387	55.000	8.59	2.82	36.58	5.34
1936	2398	1.953017	CATTGGACGGAAAACCGCA	59.047	52.632	8.59	0.00	36.58	5.69
1937	2399	1.443702	GCATTGGACGGAAAACCGC	60.444	57.895	8.59	2.12	36.58	5.68
1938	2400	0.109781	CTGCATTGGACGGAAAACCG	60.110	55.000	7.12	7.12	39.31	4.44
1939	2401	0.958822	ACTGCATTGGACGGAAAACC	59.041	50.000	0.00	0.00	0.00	3.27
1940	2402	1.930371	GCACTGCATTGGACGGAAAAC	60.930	52.381	6.16	0.00	0.00	2.43
1941	2403	0.313672	GCACTGCATTGGACGGAAAA	59.686	50.000	6.16	0.00	0.00	2.29
1942	2404	1.851021	CGCACTGCATTGGACGGAAA	61.851	55.000	6.16	0.00	0.00	3.13
1943	2405	2.324330	CGCACTGCATTGGACGGAA	61.324	57.895	6.16	0.00	0.00	4.30
1944	2406	2.741985	CGCACTGCATTGGACGGA	60.742	61.111	6.16	0.00	0.00	4.69
1945	2407	3.803082	CCGCACTGCATTGGACGG	61.803	66.667	6.16	7.38	0.00	4.79
1946	2408	2.128853	AAACCGCACTGCATTGGACG	62.129	55.000	6.16	1.91	0.00	4.79
1951	2413	1.032014	ACTGAAAACCGCACTGCATT	58.968	45.000	1.11	0.00	0.00	3.56
1971	2433	2.462723	TCGACATGGGTACTTCATCCA	58.537	47.619	0.00	0.00	34.79	3.41
2101	2569	5.651387	TCAAATGATATGCCGTTGGAAAA	57.349	34.783	0.00	0.00	0.00	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.