Multiple sequence alignment - TraesCS5A01G016800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G016800 chr5A 100.000 2633 0 0 1 2633 12577834 12580466 0.000000e+00 4863.0
1 TraesCS5A01G016800 chr5A 96.473 1758 57 3 79 1836 39309927 39311679 0.000000e+00 2898.0
2 TraesCS5A01G016800 chr5A 96.346 1259 43 3 576 1833 688535418 688536674 0.000000e+00 2067.0
3 TraesCS5A01G016800 chr5A 89.744 429 39 5 2206 2633 12415974 12416398 6.410000e-151 544.0
4 TraesCS5A01G016800 chr5A 96.970 297 7 2 1914 2209 37465543 37465838 5.060000e-137 497.0
5 TraesCS5A01G016800 chr5A 96.296 297 9 2 1914 2209 288479867 288479572 1.100000e-133 486.0
6 TraesCS5A01G016800 chr5A 91.860 258 18 3 2208 2463 12419339 12419595 8.960000e-95 357.0
7 TraesCS5A01G016800 chr5A 100.000 45 0 0 1 45 39309884 39309928 1.680000e-12 84.2
8 TraesCS5A01G016800 chr6B 96.895 1836 55 2 1 1836 235428612 235426779 0.000000e+00 3073.0
9 TraesCS5A01G016800 chr6B 95.210 1837 74 8 1 1836 558002361 558000538 0.000000e+00 2892.0
10 TraesCS5A01G016800 chr2D 95.974 1838 66 6 1 1836 291874691 291872860 0.000000e+00 2977.0
11 TraesCS5A01G016800 chr2D 96.364 55 1 1 1835 1889 375814530 375814583 3.610000e-14 89.8
12 TraesCS5A01G016800 chr4A 95.919 1838 69 5 1 1837 645864485 645866317 0.000000e+00 2974.0
13 TraesCS5A01G016800 chr1D 95.856 1834 69 4 3 1836 416349829 416351655 0.000000e+00 2959.0
14 TraesCS5A01G016800 chr1D 100.000 50 0 0 1835 1884 236959162 236959113 2.790000e-15 93.5
15 TraesCS5A01G016800 chr7A 94.182 1839 95 6 1 1837 391445144 391443316 0.000000e+00 2793.0
16 TraesCS5A01G016800 chr7A 96.633 297 8 2 1914 2209 259465733 259466028 2.350000e-135 492.0
17 TraesCS5A01G016800 chr7A 94.463 307 14 3 1914 2219 198086721 198087025 1.100000e-128 470.0
18 TraesCS5A01G016800 chr7D 90.044 1838 164 14 1 1836 35836498 35834678 0.000000e+00 2362.0
19 TraesCS5A01G016800 chr5D 95.794 428 15 3 2208 2633 21017220 21017646 0.000000e+00 688.0
20 TraesCS5A01G016800 chr5B 89.744 429 37 7 2208 2633 13923931 13924355 2.310000e-150 542.0
21 TraesCS5A01G016800 chr5B 88.811 429 38 6 2208 2633 13867986 13868407 3.880000e-143 518.0
22 TraesCS5A01G016800 chr1A 96.346 301 9 2 1914 2213 480295812 480295513 6.550000e-136 494.0
23 TraesCS5A01G016800 chr2A 96.633 297 8 2 1914 2209 597788850 597789145 2.350000e-135 492.0
24 TraesCS5A01G016800 chr2A 95.960 297 10 2 1914 2209 659992974 659992679 5.100000e-132 481.0
25 TraesCS5A01G016800 chr6A 95.973 298 10 2 1913 2209 432195953 432196249 1.420000e-132 483.0
26 TraesCS5A01G016800 chr3A 94.463 307 14 3 1914 2219 168324641 168324945 1.100000e-128 470.0
27 TraesCS5A01G016800 chr2B 100.000 51 0 0 1835 1885 473059083 473059133 7.760000e-16 95.3
28 TraesCS5A01G016800 chr2B 94.737 57 1 1 1835 1891 451835071 451835017 1.300000e-13 87.9
29 TraesCS5A01G016800 chr4B 100.000 50 0 0 1835 1884 94907921 94907872 2.790000e-15 93.5
30 TraesCS5A01G016800 chr4B 96.364 55 2 0 1835 1889 419390772 419390718 1.000000e-14 91.6
31 TraesCS5A01G016800 chr3D 96.429 56 1 1 1835 1890 47705270 47705324 1.000000e-14 91.6
32 TraesCS5A01G016800 chr7B 93.220 59 4 0 1835 1893 676000352 676000294 1.300000e-13 87.9
33 TraesCS5A01G016800 chr6D 91.935 62 3 2 1835 1895 285620583 285620643 4.670000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G016800 chr5A 12577834 12580466 2632 False 4863.0 4863 100.0000 1 2633 1 chr5A.!!$F1 2632
1 TraesCS5A01G016800 chr5A 688535418 688536674 1256 False 2067.0 2067 96.3460 576 1833 1 chr5A.!!$F3 1257
2 TraesCS5A01G016800 chr5A 39309884 39311679 1795 False 1491.1 2898 98.2365 1 1836 2 chr5A.!!$F5 1835
3 TraesCS5A01G016800 chr5A 12415974 12419595 3621 False 450.5 544 90.8020 2206 2633 2 chr5A.!!$F4 427
4 TraesCS5A01G016800 chr6B 235426779 235428612 1833 True 3073.0 3073 96.8950 1 1836 1 chr6B.!!$R1 1835
5 TraesCS5A01G016800 chr6B 558000538 558002361 1823 True 2892.0 2892 95.2100 1 1836 1 chr6B.!!$R2 1835
6 TraesCS5A01G016800 chr2D 291872860 291874691 1831 True 2977.0 2977 95.9740 1 1836 1 chr2D.!!$R1 1835
7 TraesCS5A01G016800 chr4A 645864485 645866317 1832 False 2974.0 2974 95.9190 1 1837 1 chr4A.!!$F1 1836
8 TraesCS5A01G016800 chr1D 416349829 416351655 1826 False 2959.0 2959 95.8560 3 1836 1 chr1D.!!$F1 1833
9 TraesCS5A01G016800 chr7A 391443316 391445144 1828 True 2793.0 2793 94.1820 1 1837 1 chr7A.!!$R1 1836
10 TraesCS5A01G016800 chr7D 35834678 35836498 1820 True 2362.0 2362 90.0440 1 1836 1 chr7D.!!$R1 1835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 1.678101 GATTGTACCCCTGATGCAAGC 59.322 52.381 0.0 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 1968 0.034896 TTTCTCTCCACCTTGGTCGC 59.965 55.0 0.0 0.0 39.03 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 1.678101 GATTGTACCCCTGATGCAAGC 59.322 52.381 0.00 0.00 0.00 4.01
574 575 7.078228 GTGTTGAAAGTGTTAAAGCTATCAGG 58.922 38.462 0.00 0.00 0.00 3.86
611 612 2.623418 TTGGGAGGCTCTACTTCAGA 57.377 50.000 15.23 0.00 0.00 3.27
872 874 7.306983 GCAAACAAAGGATATGCTTATTGATGC 60.307 37.037 22.70 20.40 34.29 3.91
902 904 8.650143 ATTGAGAAAGTGAAAGGGCTAATTTA 57.350 30.769 0.00 0.00 0.00 1.40
1169 1171 7.450014 TGAGCAATATCAAGGTTACCAGAAAAA 59.550 33.333 3.51 0.00 0.00 1.94
1528 1532 7.099266 ACACAACAAAGACTCAATGATTTGA 57.901 32.000 12.94 0.00 39.54 2.69
1841 1852 4.404654 CGCTCGGCCCTGCAAAAC 62.405 66.667 13.95 0.00 0.00 2.43
1842 1853 4.404654 GCTCGGCCCTGCAAAACG 62.405 66.667 9.46 0.00 0.00 3.60
1843 1854 2.978010 CTCGGCCCTGCAAAACGT 60.978 61.111 0.00 0.00 0.00 3.99
1844 1855 1.669760 CTCGGCCCTGCAAAACGTA 60.670 57.895 0.00 0.00 0.00 3.57
1845 1856 1.003112 TCGGCCCTGCAAAACGTAT 60.003 52.632 0.00 0.00 0.00 3.06
1846 1857 0.249676 TCGGCCCTGCAAAACGTATA 59.750 50.000 0.00 0.00 0.00 1.47
1847 1858 1.134340 TCGGCCCTGCAAAACGTATAT 60.134 47.619 0.00 0.00 0.00 0.86
1848 1859 1.673920 CGGCCCTGCAAAACGTATATT 59.326 47.619 0.00 0.00 0.00 1.28
1849 1860 2.286772 CGGCCCTGCAAAACGTATATTC 60.287 50.000 0.00 0.00 0.00 1.75
1850 1861 2.034179 GGCCCTGCAAAACGTATATTCC 59.966 50.000 0.00 0.00 0.00 3.01
1851 1862 2.685897 GCCCTGCAAAACGTATATTCCA 59.314 45.455 0.00 0.00 0.00 3.53
1852 1863 3.317993 GCCCTGCAAAACGTATATTCCAT 59.682 43.478 0.00 0.00 0.00 3.41
1853 1864 4.517453 GCCCTGCAAAACGTATATTCCATA 59.483 41.667 0.00 0.00 0.00 2.74
1854 1865 5.334879 GCCCTGCAAAACGTATATTCCATAG 60.335 44.000 0.00 0.00 0.00 2.23
1855 1866 5.763204 CCCTGCAAAACGTATATTCCATAGT 59.237 40.000 0.00 0.00 0.00 2.12
1856 1867 6.293407 CCCTGCAAAACGTATATTCCATAGTG 60.293 42.308 0.00 0.00 0.00 2.74
1857 1868 6.293407 CCTGCAAAACGTATATTCCATAGTGG 60.293 42.308 0.00 0.00 39.43 4.00
1858 1869 5.008217 TGCAAAACGTATATTCCATAGTGGC 59.992 40.000 0.00 0.00 37.47 5.01
1859 1870 5.562113 GCAAAACGTATATTCCATAGTGGCC 60.562 44.000 0.00 0.00 37.47 5.36
1860 1871 5.562298 AAACGTATATTCCATAGTGGCCT 57.438 39.130 3.32 0.00 37.47 5.19
1861 1872 5.562298 AACGTATATTCCATAGTGGCCTT 57.438 39.130 3.32 0.00 37.47 4.35
1862 1873 4.894784 ACGTATATTCCATAGTGGCCTTG 58.105 43.478 3.32 0.00 37.47 3.61
1863 1874 4.347000 ACGTATATTCCATAGTGGCCTTGT 59.653 41.667 3.32 0.00 37.47 3.16
1864 1875 5.541101 ACGTATATTCCATAGTGGCCTTGTA 59.459 40.000 3.32 0.00 37.47 2.41
1865 1876 6.212791 ACGTATATTCCATAGTGGCCTTGTAT 59.787 38.462 3.32 0.00 37.47 2.29
1866 1877 7.398047 ACGTATATTCCATAGTGGCCTTGTATA 59.602 37.037 3.32 0.00 37.47 1.47
1867 1878 8.255206 CGTATATTCCATAGTGGCCTTGTATAA 58.745 37.037 3.32 0.00 37.47 0.98
1868 1879 9.601217 GTATATTCCATAGTGGCCTTGTATAAG 57.399 37.037 3.32 0.00 37.47 1.73
1869 1880 5.968676 TTCCATAGTGGCCTTGTATAAGT 57.031 39.130 3.32 0.00 37.47 2.24
1870 1881 7.626999 ATTCCATAGTGGCCTTGTATAAGTA 57.373 36.000 3.32 0.00 37.47 2.24
1871 1882 7.440505 TTCCATAGTGGCCTTGTATAAGTAA 57.559 36.000 3.32 0.00 37.47 2.24
1872 1883 7.440505 TCCATAGTGGCCTTGTATAAGTAAA 57.559 36.000 3.32 0.00 37.47 2.01
1873 1884 8.041143 TCCATAGTGGCCTTGTATAAGTAAAT 57.959 34.615 3.32 0.00 37.47 1.40
1874 1885 7.936847 TCCATAGTGGCCTTGTATAAGTAAATG 59.063 37.037 3.32 0.00 37.47 2.32
1875 1886 7.174946 CCATAGTGGCCTTGTATAAGTAAATGG 59.825 40.741 3.32 0.00 31.80 3.16
1876 1887 6.321821 AGTGGCCTTGTATAAGTAAATGGA 57.678 37.500 3.32 0.00 31.80 3.41
1877 1888 6.357367 AGTGGCCTTGTATAAGTAAATGGAG 58.643 40.000 3.32 0.00 31.80 3.86
1878 1889 5.531287 GTGGCCTTGTATAAGTAAATGGAGG 59.469 44.000 3.32 0.00 31.80 4.30
1879 1890 5.070685 GGCCTTGTATAAGTAAATGGAGGG 58.929 45.833 0.00 0.00 31.80 4.30
1880 1891 5.163131 GGCCTTGTATAAGTAAATGGAGGGA 60.163 44.000 0.00 0.00 31.80 4.20
1881 1892 5.998363 GCCTTGTATAAGTAAATGGAGGGAG 59.002 44.000 0.00 0.00 31.80 4.30
1882 1893 6.409349 GCCTTGTATAAGTAAATGGAGGGAGT 60.409 42.308 0.00 0.00 31.80 3.85
1883 1894 7.202066 GCCTTGTATAAGTAAATGGAGGGAGTA 60.202 40.741 0.00 0.00 31.80 2.59
1884 1895 8.148999 CCTTGTATAAGTAAATGGAGGGAGTAC 58.851 40.741 0.00 0.00 31.80 2.73
1885 1896 7.607615 TGTATAAGTAAATGGAGGGAGTACC 57.392 40.000 0.00 0.00 40.67 3.34
1897 1908 2.685100 GGGAGTACCTTGTTTGAGTCG 58.315 52.381 0.00 0.00 35.85 4.18
1898 1909 2.067013 GGAGTACCTTGTTTGAGTCGC 58.933 52.381 0.00 0.00 0.00 5.19
1899 1910 2.067013 GAGTACCTTGTTTGAGTCGCC 58.933 52.381 0.00 0.00 0.00 5.54
1900 1911 1.692519 AGTACCTTGTTTGAGTCGCCT 59.307 47.619 0.00 0.00 0.00 5.52
1901 1912 2.104281 AGTACCTTGTTTGAGTCGCCTT 59.896 45.455 0.00 0.00 0.00 4.35
1902 1913 1.594331 ACCTTGTTTGAGTCGCCTTC 58.406 50.000 0.00 0.00 0.00 3.46
1903 1914 1.134220 ACCTTGTTTGAGTCGCCTTCA 60.134 47.619 0.00 0.00 0.00 3.02
1904 1915 1.532868 CCTTGTTTGAGTCGCCTTCAG 59.467 52.381 0.00 0.00 0.00 3.02
1905 1916 2.483876 CTTGTTTGAGTCGCCTTCAGA 58.516 47.619 0.00 0.00 0.00 3.27
1906 1917 1.865865 TGTTTGAGTCGCCTTCAGAC 58.134 50.000 0.00 0.00 38.81 3.51
1907 1918 1.138069 TGTTTGAGTCGCCTTCAGACA 59.862 47.619 0.00 3.92 40.84 3.41
1908 1919 1.795286 GTTTGAGTCGCCTTCAGACAG 59.205 52.381 0.00 0.00 40.84 3.51
1909 1920 1.328279 TTGAGTCGCCTTCAGACAGA 58.672 50.000 0.00 0.00 40.84 3.41
1910 1921 0.598562 TGAGTCGCCTTCAGACAGAC 59.401 55.000 0.00 0.00 40.84 3.51
1911 1922 0.598562 GAGTCGCCTTCAGACAGACA 59.401 55.000 0.00 0.00 40.84 3.41
1912 1923 1.000163 GAGTCGCCTTCAGACAGACAA 60.000 52.381 0.00 0.00 40.84 3.18
1913 1924 1.620819 AGTCGCCTTCAGACAGACAAT 59.379 47.619 0.00 0.00 40.84 2.71
1914 1925 2.826128 AGTCGCCTTCAGACAGACAATA 59.174 45.455 0.00 0.00 40.84 1.90
1915 1926 2.924290 GTCGCCTTCAGACAGACAATAC 59.076 50.000 0.00 0.00 38.42 1.89
1916 1927 2.826128 TCGCCTTCAGACAGACAATACT 59.174 45.455 0.00 0.00 0.00 2.12
1917 1928 3.258372 TCGCCTTCAGACAGACAATACTT 59.742 43.478 0.00 0.00 0.00 2.24
1918 1929 3.614616 CGCCTTCAGACAGACAATACTTC 59.385 47.826 0.00 0.00 0.00 3.01
1919 1930 3.935828 GCCTTCAGACAGACAATACTTCC 59.064 47.826 0.00 0.00 0.00 3.46
1920 1931 4.323104 GCCTTCAGACAGACAATACTTCCT 60.323 45.833 0.00 0.00 0.00 3.36
1921 1932 5.799213 CCTTCAGACAGACAATACTTCCTT 58.201 41.667 0.00 0.00 0.00 3.36
1922 1933 5.872070 CCTTCAGACAGACAATACTTCCTTC 59.128 44.000 0.00 0.00 0.00 3.46
1923 1934 5.060662 TCAGACAGACAATACTTCCTTCG 57.939 43.478 0.00 0.00 0.00 3.79
1924 1935 4.523173 TCAGACAGACAATACTTCCTTCGT 59.477 41.667 0.00 0.00 0.00 3.85
1925 1936 4.859798 CAGACAGACAATACTTCCTTCGTC 59.140 45.833 0.00 0.00 0.00 4.20
1926 1937 4.767928 AGACAGACAATACTTCCTTCGTCT 59.232 41.667 0.00 0.00 34.15 4.18
1927 1938 5.944599 AGACAGACAATACTTCCTTCGTCTA 59.055 40.000 0.00 0.00 32.66 2.59
1928 1939 6.094325 AGACAGACAATACTTCCTTCGTCTAG 59.906 42.308 0.00 0.00 32.66 2.43
1929 1940 5.125739 ACAGACAATACTTCCTTCGTCTAGG 59.874 44.000 0.00 0.00 32.66 3.02
1930 1941 5.125739 CAGACAATACTTCCTTCGTCTAGGT 59.874 44.000 0.00 0.00 36.63 3.08
1931 1942 5.125739 AGACAATACTTCCTTCGTCTAGGTG 59.874 44.000 0.00 0.00 36.63 4.00
1932 1943 4.771054 ACAATACTTCCTTCGTCTAGGTGT 59.229 41.667 0.00 0.00 36.63 4.16
1933 1944 4.985538 ATACTTCCTTCGTCTAGGTGTG 57.014 45.455 0.00 0.00 36.63 3.82
1934 1945 2.595238 ACTTCCTTCGTCTAGGTGTGT 58.405 47.619 0.00 0.00 36.63 3.72
1935 1946 3.759581 ACTTCCTTCGTCTAGGTGTGTA 58.240 45.455 0.00 0.00 36.63 2.90
1936 1947 4.147321 ACTTCCTTCGTCTAGGTGTGTAA 58.853 43.478 0.00 0.00 36.63 2.41
1937 1948 4.217983 ACTTCCTTCGTCTAGGTGTGTAAG 59.782 45.833 0.00 0.00 36.63 2.34
1938 1949 3.759581 TCCTTCGTCTAGGTGTGTAAGT 58.240 45.455 0.00 0.00 36.63 2.24
1939 1950 3.755378 TCCTTCGTCTAGGTGTGTAAGTC 59.245 47.826 0.00 0.00 36.63 3.01
1940 1951 3.504906 CCTTCGTCTAGGTGTGTAAGTCA 59.495 47.826 0.00 0.00 0.00 3.41
1941 1952 4.158025 CCTTCGTCTAGGTGTGTAAGTCAT 59.842 45.833 0.00 0.00 0.00 3.06
1942 1953 4.959596 TCGTCTAGGTGTGTAAGTCATC 57.040 45.455 0.00 0.00 0.00 2.92
1943 1954 4.586884 TCGTCTAGGTGTGTAAGTCATCT 58.413 43.478 0.00 0.00 0.00 2.90
1944 1955 5.008331 TCGTCTAGGTGTGTAAGTCATCTT 58.992 41.667 0.00 0.00 37.65 2.40
1945 1956 6.175471 TCGTCTAGGTGTGTAAGTCATCTTA 58.825 40.000 0.00 0.00 35.36 2.10
1955 1966 5.779806 GTAAGTCATCTTACGTTGTGCAT 57.220 39.130 0.00 0.00 43.95 3.96
1956 1967 4.928661 AAGTCATCTTACGTTGTGCATC 57.071 40.909 0.00 0.00 31.46 3.91
1957 1968 2.923655 AGTCATCTTACGTTGTGCATCG 59.076 45.455 0.00 0.00 0.00 3.84
1958 1969 1.658596 TCATCTTACGTTGTGCATCGC 59.341 47.619 0.00 0.00 0.00 4.58
1959 1970 0.645355 ATCTTACGTTGTGCATCGCG 59.355 50.000 0.00 0.00 0.00 5.87
1960 1971 0.387494 TCTTACGTTGTGCATCGCGA 60.387 50.000 13.09 13.09 0.00 5.87
1961 1972 0.246757 CTTACGTTGTGCATCGCGAC 60.247 55.000 12.93 0.00 0.00 5.19
1962 1973 1.619526 TTACGTTGTGCATCGCGACC 61.620 55.000 12.93 6.26 0.00 4.79
1963 1974 2.750715 TACGTTGTGCATCGCGACCA 62.751 55.000 12.93 9.41 0.00 4.02
1964 1975 2.942879 GTTGTGCATCGCGACCAA 59.057 55.556 12.93 9.64 0.00 3.67
1965 1976 1.154413 GTTGTGCATCGCGACCAAG 60.154 57.895 12.93 2.71 0.00 3.61
1966 1977 2.324330 TTGTGCATCGCGACCAAGG 61.324 57.895 12.93 0.00 0.00 3.61
1967 1978 2.742372 GTGCATCGCGACCAAGGT 60.742 61.111 12.93 0.00 0.00 3.50
1968 1979 2.741985 TGCATCGCGACCAAGGTG 60.742 61.111 12.93 5.73 0.00 4.00
1969 1980 3.499737 GCATCGCGACCAAGGTGG 61.500 66.667 12.93 0.00 45.02 4.61
1970 1981 2.264480 CATCGCGACCAAGGTGGA 59.736 61.111 12.93 0.00 40.96 4.02
1971 1982 1.811266 CATCGCGACCAAGGTGGAG 60.811 63.158 12.93 1.95 40.96 3.86
1972 1983 1.982395 ATCGCGACCAAGGTGGAGA 60.982 57.895 12.93 9.77 40.96 3.71
1973 1984 1.949847 ATCGCGACCAAGGTGGAGAG 61.950 60.000 12.93 0.97 40.96 3.20
1974 1985 2.636412 CGCGACCAAGGTGGAGAGA 61.636 63.158 0.00 0.00 40.96 3.10
1975 1986 1.671742 GCGACCAAGGTGGAGAGAA 59.328 57.895 5.37 0.00 40.96 2.87
1976 1987 0.034896 GCGACCAAGGTGGAGAGAAA 59.965 55.000 5.37 0.00 40.96 2.52
1977 1988 1.542547 GCGACCAAGGTGGAGAGAAAA 60.543 52.381 5.37 0.00 40.96 2.29
1978 1989 2.846193 CGACCAAGGTGGAGAGAAAAA 58.154 47.619 0.18 0.00 40.96 1.94
1979 1990 2.548480 CGACCAAGGTGGAGAGAAAAAC 59.452 50.000 0.18 0.00 40.96 2.43
1980 1991 2.548480 GACCAAGGTGGAGAGAAAAACG 59.452 50.000 0.18 0.00 40.96 3.60
1981 1992 2.171870 ACCAAGGTGGAGAGAAAAACGA 59.828 45.455 0.18 0.00 40.96 3.85
1982 1993 3.211045 CCAAGGTGGAGAGAAAAACGAA 58.789 45.455 0.00 0.00 40.96 3.85
1983 1994 3.630312 CCAAGGTGGAGAGAAAAACGAAA 59.370 43.478 0.00 0.00 40.96 3.46
1984 1995 4.097286 CCAAGGTGGAGAGAAAAACGAAAA 59.903 41.667 0.00 0.00 40.96 2.29
1985 1996 5.393678 CCAAGGTGGAGAGAAAAACGAAAAA 60.394 40.000 0.00 0.00 40.96 1.94
2040 2051 3.747099 ATGCAATGAACTAACGACTGC 57.253 42.857 0.00 0.00 0.00 4.40
2041 2052 2.488952 TGCAATGAACTAACGACTGCA 58.511 42.857 0.00 0.00 36.06 4.41
2042 2053 3.073678 TGCAATGAACTAACGACTGCAT 58.926 40.909 0.00 0.00 33.65 3.96
2043 2054 3.120234 TGCAATGAACTAACGACTGCATG 60.120 43.478 0.00 0.00 33.65 4.06
2044 2055 3.120199 GCAATGAACTAACGACTGCATGT 60.120 43.478 0.00 0.00 0.00 3.21
2045 2056 4.613622 GCAATGAACTAACGACTGCATGTT 60.614 41.667 0.00 0.00 0.00 2.71
2046 2057 5.390461 GCAATGAACTAACGACTGCATGTTA 60.390 40.000 0.00 0.00 0.00 2.41
2047 2058 6.675486 GCAATGAACTAACGACTGCATGTTAT 60.675 38.462 6.75 0.00 30.76 1.89
2048 2059 5.778161 TGAACTAACGACTGCATGTTATG 57.222 39.130 6.75 0.00 30.76 1.90
2049 2060 5.234752 TGAACTAACGACTGCATGTTATGT 58.765 37.500 6.75 5.45 30.76 2.29
2050 2061 5.699001 TGAACTAACGACTGCATGTTATGTT 59.301 36.000 14.10 14.10 30.76 2.71
2051 2062 6.203915 TGAACTAACGACTGCATGTTATGTTT 59.796 34.615 6.75 2.73 30.76 2.83
2052 2063 5.927030 ACTAACGACTGCATGTTATGTTTG 58.073 37.500 6.75 7.69 30.76 2.93
2053 2064 3.829886 ACGACTGCATGTTATGTTTGG 57.170 42.857 0.00 0.00 0.00 3.28
2054 2065 3.146066 ACGACTGCATGTTATGTTTGGT 58.854 40.909 0.00 0.00 0.00 3.67
2055 2066 4.320023 ACGACTGCATGTTATGTTTGGTA 58.680 39.130 0.00 0.00 0.00 3.25
2056 2067 4.391830 ACGACTGCATGTTATGTTTGGTAG 59.608 41.667 0.00 0.00 0.00 3.18
2057 2068 4.391830 CGACTGCATGTTATGTTTGGTAGT 59.608 41.667 0.00 0.00 0.00 2.73
2058 2069 5.445939 CGACTGCATGTTATGTTTGGTAGTC 60.446 44.000 0.00 0.00 0.00 2.59
2059 2070 4.391830 ACTGCATGTTATGTTTGGTAGTCG 59.608 41.667 0.00 0.00 0.00 4.18
2060 2071 3.126171 TGCATGTTATGTTTGGTAGTCGC 59.874 43.478 0.00 0.00 0.00 5.19
2061 2072 3.126171 GCATGTTATGTTTGGTAGTCGCA 59.874 43.478 0.00 0.00 0.00 5.10
2062 2073 4.378978 GCATGTTATGTTTGGTAGTCGCAA 60.379 41.667 0.00 0.00 0.00 4.85
2063 2074 5.323900 CATGTTATGTTTGGTAGTCGCAAG 58.676 41.667 0.00 0.00 0.00 4.01
2064 2075 4.382291 TGTTATGTTTGGTAGTCGCAAGT 58.618 39.130 0.00 0.00 39.48 3.16
2065 2076 4.449743 TGTTATGTTTGGTAGTCGCAAGTC 59.550 41.667 0.00 0.00 39.48 3.01
2066 2077 2.605837 TGTTTGGTAGTCGCAAGTCA 57.394 45.000 0.00 0.00 39.48 3.41
2067 2078 3.120321 TGTTTGGTAGTCGCAAGTCAT 57.880 42.857 0.00 0.00 39.48 3.06
2068 2079 3.472652 TGTTTGGTAGTCGCAAGTCATT 58.527 40.909 0.00 0.00 39.48 2.57
2069 2080 3.249799 TGTTTGGTAGTCGCAAGTCATTG 59.750 43.478 0.00 0.00 39.57 2.82
2070 2081 3.394674 TTGGTAGTCGCAAGTCATTGA 57.605 42.857 0.00 0.00 38.83 2.57
2071 2082 3.394674 TGGTAGTCGCAAGTCATTGAA 57.605 42.857 0.00 0.00 38.83 2.69
2072 2083 3.734463 TGGTAGTCGCAAGTCATTGAAA 58.266 40.909 0.00 0.00 38.83 2.69
2073 2084 3.745975 TGGTAGTCGCAAGTCATTGAAAG 59.254 43.478 0.00 0.00 38.83 2.62
2074 2085 2.977405 AGTCGCAAGTCATTGAAAGC 57.023 45.000 0.00 0.00 38.83 3.51
2075 2086 2.221169 AGTCGCAAGTCATTGAAAGCA 58.779 42.857 6.93 0.00 38.83 3.91
2076 2087 2.816087 AGTCGCAAGTCATTGAAAGCAT 59.184 40.909 6.93 0.00 38.83 3.79
2077 2088 2.912967 GTCGCAAGTCATTGAAAGCATG 59.087 45.455 6.93 0.00 38.83 4.06
2078 2089 1.652124 CGCAAGTCATTGAAAGCATGC 59.348 47.619 10.51 10.51 38.83 4.06
2079 2090 2.679450 GCAAGTCATTGAAAGCATGCA 58.321 42.857 21.98 0.00 38.83 3.96
2080 2091 2.410730 GCAAGTCATTGAAAGCATGCAC 59.589 45.455 21.98 11.31 38.83 4.57
2081 2092 3.644823 CAAGTCATTGAAAGCATGCACA 58.355 40.909 21.98 13.87 38.83 4.57
2082 2093 4.052608 CAAGTCATTGAAAGCATGCACAA 58.947 39.130 21.98 21.20 38.83 3.33
2083 2094 3.645884 AGTCATTGAAAGCATGCACAAC 58.354 40.909 21.98 11.54 0.00 3.32
2084 2095 2.733026 GTCATTGAAAGCATGCACAACC 59.267 45.455 21.98 10.44 0.00 3.77
2085 2096 2.070783 CATTGAAAGCATGCACAACCC 58.929 47.619 21.98 3.14 0.00 4.11
2086 2097 1.117994 TTGAAAGCATGCACAACCCA 58.882 45.000 21.98 5.83 0.00 4.51
2087 2098 0.388659 TGAAAGCATGCACAACCCAC 59.611 50.000 21.98 2.87 0.00 4.61
2088 2099 0.388659 GAAAGCATGCACAACCCACA 59.611 50.000 21.98 0.00 0.00 4.17
2089 2100 1.001181 GAAAGCATGCACAACCCACAT 59.999 47.619 21.98 0.00 0.00 3.21
2090 2101 1.921982 AAGCATGCACAACCCACATA 58.078 45.000 21.98 0.00 0.00 2.29
2091 2102 2.148446 AGCATGCACAACCCACATAT 57.852 45.000 21.98 0.00 0.00 1.78
2092 2103 2.026641 AGCATGCACAACCCACATATC 58.973 47.619 21.98 0.00 0.00 1.63
2093 2104 2.026641 GCATGCACAACCCACATATCT 58.973 47.619 14.21 0.00 0.00 1.98
2094 2105 2.428171 GCATGCACAACCCACATATCTT 59.572 45.455 14.21 0.00 0.00 2.40
2095 2106 3.631686 GCATGCACAACCCACATATCTTA 59.368 43.478 14.21 0.00 0.00 2.10
2096 2107 4.279169 GCATGCACAACCCACATATCTTAT 59.721 41.667 14.21 0.00 0.00 1.73
2097 2108 5.221303 GCATGCACAACCCACATATCTTATT 60.221 40.000 14.21 0.00 0.00 1.40
2098 2109 5.833406 TGCACAACCCACATATCTTATTG 57.167 39.130 0.00 0.00 0.00 1.90
2099 2110 4.644234 TGCACAACCCACATATCTTATTGG 59.356 41.667 0.00 0.00 0.00 3.16
2100 2111 4.644685 GCACAACCCACATATCTTATTGGT 59.355 41.667 0.00 0.00 0.00 3.67
2101 2112 5.127031 GCACAACCCACATATCTTATTGGTT 59.873 40.000 0.00 0.00 35.09 3.67
2108 2119 7.394359 ACCCACATATCTTATTGGTTGATATGC 59.606 37.037 17.07 0.00 46.68 3.14
2109 2120 7.148018 CCCACATATCTTATTGGTTGATATGCC 60.148 40.741 17.07 0.00 46.68 4.40
2110 2121 7.394077 CCACATATCTTATTGGTTGATATGCCA 59.606 37.037 17.07 0.00 46.68 4.92
2111 2122 8.239314 CACATATCTTATTGGTTGATATGCCAC 58.761 37.037 17.07 0.00 46.68 5.01
2112 2123 7.944000 ACATATCTTATTGGTTGATATGCCACA 59.056 33.333 17.07 0.00 46.68 4.17
2113 2124 8.795513 CATATCTTATTGGTTGATATGCCACAA 58.204 33.333 8.60 0.00 41.31 3.33
2114 2125 7.658525 ATCTTATTGGTTGATATGCCACAAA 57.341 32.000 0.00 0.00 34.02 2.83
2115 2126 7.473735 TCTTATTGGTTGATATGCCACAAAA 57.526 32.000 0.00 0.00 34.02 2.44
2116 2127 7.319646 TCTTATTGGTTGATATGCCACAAAAC 58.680 34.615 0.00 0.00 34.02 2.43
2117 2128 4.944619 TTGGTTGATATGCCACAAAACA 57.055 36.364 0.00 0.00 34.02 2.83
2118 2129 4.944619 TGGTTGATATGCCACAAAACAA 57.055 36.364 0.00 0.00 0.00 2.83
2119 2130 5.282055 TGGTTGATATGCCACAAAACAAA 57.718 34.783 0.00 0.00 0.00 2.83
2120 2131 5.674525 TGGTTGATATGCCACAAAACAAAA 58.325 33.333 0.00 0.00 0.00 2.44
2121 2132 6.115446 TGGTTGATATGCCACAAAACAAAAA 58.885 32.000 0.00 0.00 0.00 1.94
2142 2153 6.701432 AAAACGAGAAGGAGTTAATGTACG 57.299 37.500 0.00 0.00 0.00 3.67
2143 2154 4.367386 ACGAGAAGGAGTTAATGTACGG 57.633 45.455 0.00 0.00 0.00 4.02
2144 2155 3.760684 ACGAGAAGGAGTTAATGTACGGT 59.239 43.478 0.00 0.00 0.00 4.83
2145 2156 4.103357 CGAGAAGGAGTTAATGTACGGTG 58.897 47.826 0.00 0.00 0.00 4.94
2146 2157 3.858247 AGAAGGAGTTAATGTACGGTGC 58.142 45.455 0.00 0.00 0.00 5.01
2147 2158 2.685850 AGGAGTTAATGTACGGTGCC 57.314 50.000 0.00 0.00 0.00 5.01
2148 2159 2.185387 AGGAGTTAATGTACGGTGCCT 58.815 47.619 0.00 0.00 0.00 4.75
2149 2160 3.368248 AGGAGTTAATGTACGGTGCCTA 58.632 45.455 0.00 0.00 0.00 3.93
2150 2161 3.770933 AGGAGTTAATGTACGGTGCCTAA 59.229 43.478 0.00 0.00 0.00 2.69
2151 2162 4.117685 GGAGTTAATGTACGGTGCCTAAG 58.882 47.826 0.00 0.00 0.00 2.18
2152 2163 4.382362 GGAGTTAATGTACGGTGCCTAAGT 60.382 45.833 0.00 0.00 0.00 2.24
2153 2164 5.163519 GGAGTTAATGTACGGTGCCTAAGTA 60.164 44.000 0.00 0.00 0.00 2.24
2154 2165 6.462067 GGAGTTAATGTACGGTGCCTAAGTAT 60.462 42.308 0.00 0.00 0.00 2.12
2155 2166 6.881570 AGTTAATGTACGGTGCCTAAGTATT 58.118 36.000 0.00 0.00 0.00 1.89
2156 2167 7.333323 AGTTAATGTACGGTGCCTAAGTATTT 58.667 34.615 0.00 0.00 0.00 1.40
2157 2168 7.825761 AGTTAATGTACGGTGCCTAAGTATTTT 59.174 33.333 0.00 0.00 0.00 1.82
2158 2169 6.431198 AATGTACGGTGCCTAAGTATTTTG 57.569 37.500 0.00 0.00 0.00 2.44
2159 2170 4.255301 TGTACGGTGCCTAAGTATTTTGG 58.745 43.478 0.00 0.00 33.04 3.28
2160 2171 2.718563 ACGGTGCCTAAGTATTTTGGG 58.281 47.619 0.99 0.00 30.91 4.12
2161 2172 2.306512 ACGGTGCCTAAGTATTTTGGGA 59.693 45.455 0.99 0.00 30.91 4.37
2162 2173 3.053917 ACGGTGCCTAAGTATTTTGGGAT 60.054 43.478 0.99 0.00 32.82 3.85
2163 2174 3.951680 CGGTGCCTAAGTATTTTGGGATT 59.048 43.478 0.99 0.00 32.82 3.01
2164 2175 5.127491 CGGTGCCTAAGTATTTTGGGATTA 58.873 41.667 0.99 0.00 32.82 1.75
2165 2176 5.768164 CGGTGCCTAAGTATTTTGGGATTAT 59.232 40.000 0.99 0.00 32.82 1.28
2166 2177 6.264518 CGGTGCCTAAGTATTTTGGGATTATT 59.735 38.462 0.99 0.00 32.82 1.40
2167 2178 7.201875 CGGTGCCTAAGTATTTTGGGATTATTT 60.202 37.037 0.99 0.00 32.82 1.40
2168 2179 7.926018 GGTGCCTAAGTATTTTGGGATTATTTG 59.074 37.037 0.99 0.00 32.82 2.32
2169 2180 7.926018 GTGCCTAAGTATTTTGGGATTATTTGG 59.074 37.037 0.99 0.00 32.82 3.28
2170 2181 7.621683 TGCCTAAGTATTTTGGGATTATTTGGT 59.378 33.333 0.99 0.00 30.91 3.67
2171 2182 8.482943 GCCTAAGTATTTTGGGATTATTTGGTT 58.517 33.333 0.99 0.00 30.91 3.67
2175 2186 8.996024 AGTATTTTGGGATTATTTGGTTTTCG 57.004 30.769 0.00 0.00 0.00 3.46
2176 2187 8.590204 AGTATTTTGGGATTATTTGGTTTTCGT 58.410 29.630 0.00 0.00 0.00 3.85
2177 2188 9.857957 GTATTTTGGGATTATTTGGTTTTCGTA 57.142 29.630 0.00 0.00 0.00 3.43
2179 2190 8.819643 TTTTGGGATTATTTGGTTTTCGTAAG 57.180 30.769 0.00 0.00 0.00 2.34
2180 2191 6.518208 TGGGATTATTTGGTTTTCGTAAGG 57.482 37.500 0.00 0.00 38.47 2.69
2181 2192 6.011481 TGGGATTATTTGGTTTTCGTAAGGT 58.989 36.000 0.00 0.00 38.47 3.50
2182 2193 6.071840 TGGGATTATTTGGTTTTCGTAAGGTG 60.072 38.462 0.00 0.00 38.47 4.00
2183 2194 6.151480 GGGATTATTTGGTTTTCGTAAGGTGA 59.849 38.462 0.00 0.00 38.47 4.02
2184 2195 7.025365 GGATTATTTGGTTTTCGTAAGGTGAC 58.975 38.462 0.00 0.00 38.47 3.67
2201 2212 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
2202 2213 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
2203 2214 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
2204 2215 1.749634 CTTACACACCTAGACGGAGGG 59.250 57.143 5.42 0.00 41.36 4.30
2220 2231 5.021458 ACGGAGGGAGTACTAGAAATTTCA 58.979 41.667 19.99 5.68 0.00 2.69
2268 2279 3.244561 CCTCTGTCCACCAACATACTTGT 60.245 47.826 0.00 0.00 37.82 3.16
2288 2299 3.699038 TGTTGGCTTTATCACTATTGGCC 59.301 43.478 0.00 0.00 38.67 5.36
2297 2308 4.785346 ATCACTATTGGCCAAGAGATGT 57.215 40.909 39.54 23.39 34.06 3.06
2336 2347 2.484287 ATCCAGCCAACCACTTCCCG 62.484 60.000 0.00 0.00 0.00 5.14
2338 2349 4.660938 AGCCAACCACTTCCCGCC 62.661 66.667 0.00 0.00 0.00 6.13
2343 2354 1.002134 AACCACTTCCCGCCAGATG 60.002 57.895 0.00 0.00 0.00 2.90
2363 2374 5.920273 AGATGTTTCTAACGTGGCATTTTTG 59.080 36.000 0.00 0.00 0.00 2.44
2415 2426 4.237724 GGCAACACAAGCTATTCCTTTTC 58.762 43.478 0.00 0.00 0.00 2.29
2424 2435 4.985538 AGCTATTCCTTTTCAGTCCACAA 58.014 39.130 0.00 0.00 0.00 3.33
2425 2436 4.762251 AGCTATTCCTTTTCAGTCCACAAC 59.238 41.667 0.00 0.00 0.00 3.32
2426 2437 4.518970 GCTATTCCTTTTCAGTCCACAACA 59.481 41.667 0.00 0.00 0.00 3.33
2463 2474 9.378597 CTGCGATGAAACATCTAAGATTTATTG 57.621 33.333 9.51 0.00 0.00 1.90
2513 2524 9.979578 TTAACTTTACTTGGTCTACAACGAATA 57.020 29.630 0.00 0.00 34.76 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.734865 TCAGGGGTACAATCAAGTATGATAGAT 59.265 37.037 0.00 0.00 45.60 1.98
88 89 3.655276 AAAGACATTTGCTCTTGCTGG 57.345 42.857 0.00 0.00 40.48 4.85
125 126 6.808829 TGCAAACTTGACTTGAAGATGAATT 58.191 32.000 0.00 0.00 0.00 2.17
330 331 9.396022 CTGGATAAAAAGCTCTAGGATTTACAA 57.604 33.333 0.00 0.00 31.85 2.41
786 787 4.887071 TCATACCAAATGACTATTGCCACC 59.113 41.667 0.00 0.00 0.00 4.61
872 874 4.142513 GCCCTTTCACTTTCTCAATAGCAG 60.143 45.833 0.00 0.00 0.00 4.24
902 904 1.838077 CCCTGTACCCCTCGAAGAAAT 59.162 52.381 0.00 0.00 34.09 2.17
1528 1532 3.668447 CACTCTCAAGTGCTATTGTGGT 58.332 45.455 0.00 0.00 46.01 4.16
1554 1558 5.907207 TCCTCGTAATCAATCTTCTCCAAG 58.093 41.667 0.00 0.00 0.00 3.61
1766 1776 3.202151 TGGGGCCCTATCTCACTAAAAAG 59.798 47.826 25.93 0.00 0.00 2.27
1827 1838 0.249676 TATACGTTTTGCAGGGCCGA 59.750 50.000 0.00 0.00 0.00 5.54
1837 1848 5.937111 AGGCCACTATGGAATATACGTTTT 58.063 37.500 5.01 0.00 40.96 2.43
1838 1849 5.562298 AGGCCACTATGGAATATACGTTT 57.438 39.130 5.01 0.00 40.96 3.60
1839 1850 5.163237 ACAAGGCCACTATGGAATATACGTT 60.163 40.000 5.01 0.00 40.96 3.99
1840 1851 4.347000 ACAAGGCCACTATGGAATATACGT 59.653 41.667 5.01 0.00 40.96 3.57
1841 1852 4.894784 ACAAGGCCACTATGGAATATACG 58.105 43.478 5.01 0.00 40.96 3.06
1842 1853 9.601217 CTTATACAAGGCCACTATGGAATATAC 57.399 37.037 5.01 0.00 40.96 1.47
1843 1854 9.333961 ACTTATACAAGGCCACTATGGAATATA 57.666 33.333 5.01 0.00 36.40 0.86
1844 1855 8.219660 ACTTATACAAGGCCACTATGGAATAT 57.780 34.615 5.01 0.00 36.40 1.28
1845 1856 7.626999 ACTTATACAAGGCCACTATGGAATA 57.373 36.000 5.01 0.00 36.40 1.75
1846 1857 6.515512 ACTTATACAAGGCCACTATGGAAT 57.484 37.500 5.01 0.00 36.40 3.01
1847 1858 5.968676 ACTTATACAAGGCCACTATGGAA 57.031 39.130 5.01 0.00 36.40 3.53
1848 1859 7.440505 TTTACTTATACAAGGCCACTATGGA 57.559 36.000 5.01 0.00 36.40 3.41
1849 1860 7.174946 CCATTTACTTATACAAGGCCACTATGG 59.825 40.741 5.01 0.00 36.51 2.74
1850 1861 7.936847 TCCATTTACTTATACAAGGCCACTATG 59.063 37.037 5.01 0.21 35.97 2.23
1851 1862 8.041143 TCCATTTACTTATACAAGGCCACTAT 57.959 34.615 5.01 0.00 35.97 2.12
1852 1863 7.419750 CCTCCATTTACTTATACAAGGCCACTA 60.420 40.741 5.01 0.00 35.97 2.74
1853 1864 6.321821 TCCATTTACTTATACAAGGCCACT 57.678 37.500 5.01 0.00 35.97 4.00
1854 1865 5.531287 CCTCCATTTACTTATACAAGGCCAC 59.469 44.000 5.01 0.00 35.97 5.01
1855 1866 5.398581 CCCTCCATTTACTTATACAAGGCCA 60.399 44.000 5.01 0.00 35.97 5.36
1856 1867 5.070685 CCCTCCATTTACTTATACAAGGCC 58.929 45.833 0.00 0.00 35.97 5.19
1857 1868 5.937111 TCCCTCCATTTACTTATACAAGGC 58.063 41.667 0.00 0.00 35.97 4.35
1858 1869 7.138054 ACTCCCTCCATTTACTTATACAAGG 57.862 40.000 0.00 0.00 35.97 3.61
1859 1870 8.148999 GGTACTCCCTCCATTTACTTATACAAG 58.851 40.741 0.00 0.00 37.81 3.16
1860 1871 7.847848 AGGTACTCCCTCCATTTACTTATACAA 59.152 37.037 0.00 0.00 40.71 2.41
1861 1872 7.367828 AGGTACTCCCTCCATTTACTTATACA 58.632 38.462 0.00 0.00 40.71 2.29
1862 1873 7.852550 AGGTACTCCCTCCATTTACTTATAC 57.147 40.000 0.00 0.00 40.71 1.47
1863 1874 7.847848 ACAAGGTACTCCCTCCATTTACTTATA 59.152 37.037 0.00 0.00 45.47 0.98
1864 1875 6.677076 ACAAGGTACTCCCTCCATTTACTTAT 59.323 38.462 0.00 0.00 45.47 1.73
1865 1876 6.027482 ACAAGGTACTCCCTCCATTTACTTA 58.973 40.000 0.00 0.00 45.47 2.24
1866 1877 4.850386 ACAAGGTACTCCCTCCATTTACTT 59.150 41.667 0.00 0.00 45.47 2.24
1867 1878 4.436079 ACAAGGTACTCCCTCCATTTACT 58.564 43.478 0.00 0.00 45.47 2.24
1868 1879 4.838904 ACAAGGTACTCCCTCCATTTAC 57.161 45.455 0.00 0.00 45.47 2.01
1869 1880 5.311121 TCAAACAAGGTACTCCCTCCATTTA 59.689 40.000 0.00 0.00 45.47 1.40
1870 1881 4.105697 TCAAACAAGGTACTCCCTCCATTT 59.894 41.667 0.00 0.00 45.47 2.32
1871 1882 3.655777 TCAAACAAGGTACTCCCTCCATT 59.344 43.478 0.00 0.00 45.47 3.16
1872 1883 3.256704 TCAAACAAGGTACTCCCTCCAT 58.743 45.455 0.00 0.00 45.47 3.41
1873 1884 2.637872 CTCAAACAAGGTACTCCCTCCA 59.362 50.000 0.00 0.00 45.47 3.86
1874 1885 2.638363 ACTCAAACAAGGTACTCCCTCC 59.362 50.000 0.00 0.00 45.47 4.30
1875 1886 3.614390 CGACTCAAACAAGGTACTCCCTC 60.614 52.174 0.00 0.00 45.47 4.30
1877 1888 2.685100 CGACTCAAACAAGGTACTCCC 58.315 52.381 0.00 0.00 38.49 4.30
1878 1889 2.067013 GCGACTCAAACAAGGTACTCC 58.933 52.381 0.00 0.00 38.49 3.85
1879 1890 2.067013 GGCGACTCAAACAAGGTACTC 58.933 52.381 0.00 0.00 38.49 2.59
1880 1891 1.692519 AGGCGACTCAAACAAGGTACT 59.307 47.619 0.00 0.00 35.76 2.73
1881 1892 2.165319 AGGCGACTCAAACAAGGTAC 57.835 50.000 0.00 0.00 32.90 3.34
1882 1893 2.103432 TGAAGGCGACTCAAACAAGGTA 59.897 45.455 0.00 0.00 42.68 3.08
1883 1894 1.134220 TGAAGGCGACTCAAACAAGGT 60.134 47.619 0.00 0.00 42.68 3.50
1884 1895 1.532868 CTGAAGGCGACTCAAACAAGG 59.467 52.381 0.00 0.00 42.68 3.61
1885 1896 2.221981 GTCTGAAGGCGACTCAAACAAG 59.778 50.000 0.00 0.00 42.68 3.16
1886 1897 2.210116 GTCTGAAGGCGACTCAAACAA 58.790 47.619 0.00 0.00 42.68 2.83
1887 1898 1.138069 TGTCTGAAGGCGACTCAAACA 59.862 47.619 0.00 0.00 42.68 2.83
1888 1899 1.795286 CTGTCTGAAGGCGACTCAAAC 59.205 52.381 0.00 0.00 42.68 2.93
1889 1900 1.686587 TCTGTCTGAAGGCGACTCAAA 59.313 47.619 0.00 0.00 42.68 2.69
1890 1901 1.000163 GTCTGTCTGAAGGCGACTCAA 60.000 52.381 0.00 0.00 42.68 3.02
1891 1902 0.598562 GTCTGTCTGAAGGCGACTCA 59.401 55.000 0.00 0.00 42.68 3.41
1892 1903 0.598562 TGTCTGTCTGAAGGCGACTC 59.401 55.000 0.00 0.00 42.68 3.36
1894 1905 2.086054 ATTGTCTGTCTGAAGGCGAC 57.914 50.000 0.00 0.00 0.00 5.19
1895 1906 2.826128 AGTATTGTCTGTCTGAAGGCGA 59.174 45.455 0.00 0.00 0.00 5.54
1896 1907 3.238108 AGTATTGTCTGTCTGAAGGCG 57.762 47.619 0.00 0.00 0.00 5.52
1897 1908 3.935828 GGAAGTATTGTCTGTCTGAAGGC 59.064 47.826 0.00 0.00 0.00 4.35
1898 1909 5.413309 AGGAAGTATTGTCTGTCTGAAGG 57.587 43.478 0.00 0.00 0.00 3.46
1899 1910 5.574830 CGAAGGAAGTATTGTCTGTCTGAAG 59.425 44.000 0.00 0.00 0.00 3.02
1900 1911 5.010719 ACGAAGGAAGTATTGTCTGTCTGAA 59.989 40.000 0.00 0.00 0.00 3.02
1901 1912 4.523173 ACGAAGGAAGTATTGTCTGTCTGA 59.477 41.667 0.00 0.00 0.00 3.27
1902 1913 4.810790 ACGAAGGAAGTATTGTCTGTCTG 58.189 43.478 0.00 0.00 0.00 3.51
1903 1914 4.767928 AGACGAAGGAAGTATTGTCTGTCT 59.232 41.667 0.00 0.00 35.52 3.41
1904 1915 5.061920 AGACGAAGGAAGTATTGTCTGTC 57.938 43.478 0.00 0.00 35.52 3.51
1905 1916 5.125739 CCTAGACGAAGGAAGTATTGTCTGT 59.874 44.000 6.03 0.00 39.15 3.41
1906 1917 5.125739 ACCTAGACGAAGGAAGTATTGTCTG 59.874 44.000 9.64 0.00 39.15 3.51
1907 1918 5.125739 CACCTAGACGAAGGAAGTATTGTCT 59.874 44.000 9.64 0.00 39.15 3.41
1908 1919 5.105837 ACACCTAGACGAAGGAAGTATTGTC 60.106 44.000 9.64 0.00 39.15 3.18
1909 1920 4.771054 ACACCTAGACGAAGGAAGTATTGT 59.229 41.667 9.64 1.24 39.15 2.71
1910 1921 5.103000 CACACCTAGACGAAGGAAGTATTG 58.897 45.833 9.64 0.73 39.15 1.90
1911 1922 4.771054 ACACACCTAGACGAAGGAAGTATT 59.229 41.667 9.64 0.00 39.15 1.89
1912 1923 4.342359 ACACACCTAGACGAAGGAAGTAT 58.658 43.478 9.64 0.00 39.15 2.12
1913 1924 3.759581 ACACACCTAGACGAAGGAAGTA 58.240 45.455 9.64 0.00 39.15 2.24
1914 1925 2.595238 ACACACCTAGACGAAGGAAGT 58.405 47.619 9.64 5.61 39.15 3.01
1915 1926 4.217983 ACTTACACACCTAGACGAAGGAAG 59.782 45.833 9.64 5.55 39.15 3.46
1916 1927 4.147321 ACTTACACACCTAGACGAAGGAA 58.853 43.478 9.64 0.00 39.15 3.36
1917 1928 3.755378 GACTTACACACCTAGACGAAGGA 59.245 47.826 9.64 0.00 39.15 3.36
1918 1929 3.504906 TGACTTACACACCTAGACGAAGG 59.495 47.826 0.00 0.00 42.82 3.46
1919 1930 4.761235 TGACTTACACACCTAGACGAAG 57.239 45.455 0.00 0.00 0.00 3.79
1920 1931 5.008331 AGATGACTTACACACCTAGACGAA 58.992 41.667 0.00 0.00 0.00 3.85
1921 1932 4.586884 AGATGACTTACACACCTAGACGA 58.413 43.478 0.00 0.00 0.00 4.20
1922 1933 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
1934 1945 4.561213 CGATGCACAACGTAAGATGACTTA 59.439 41.667 0.00 0.00 43.67 2.24
1935 1946 3.367932 CGATGCACAACGTAAGATGACTT 59.632 43.478 0.00 0.00 43.67 3.01
1936 1947 2.923655 CGATGCACAACGTAAGATGACT 59.076 45.455 0.00 0.00 43.67 3.41
1937 1948 2.534939 GCGATGCACAACGTAAGATGAC 60.535 50.000 10.51 0.00 43.67 3.06
1938 1949 1.658596 GCGATGCACAACGTAAGATGA 59.341 47.619 10.51 0.00 43.67 2.92
1939 1950 1.589731 CGCGATGCACAACGTAAGATG 60.590 52.381 0.00 0.00 46.71 2.90
1940 1951 0.645355 CGCGATGCACAACGTAAGAT 59.355 50.000 0.00 0.00 43.62 2.40
1941 1952 0.387494 TCGCGATGCACAACGTAAGA 60.387 50.000 3.71 6.28 43.62 2.10
1943 1954 1.619526 GGTCGCGATGCACAACGTAA 61.620 55.000 14.06 0.00 0.00 3.18
1944 1955 2.089936 GGTCGCGATGCACAACGTA 61.090 57.895 14.06 0.00 0.00 3.57
1945 1956 3.411351 GGTCGCGATGCACAACGT 61.411 61.111 14.06 0.00 0.00 3.99
1946 1957 2.816692 CTTGGTCGCGATGCACAACG 62.817 60.000 14.06 6.50 0.00 4.10
1947 1958 1.154413 CTTGGTCGCGATGCACAAC 60.154 57.895 14.06 0.00 0.00 3.32
1948 1959 2.324330 CCTTGGTCGCGATGCACAA 61.324 57.895 14.06 14.40 0.00 3.33
1949 1960 2.741985 CCTTGGTCGCGATGCACA 60.742 61.111 14.06 6.89 0.00 4.57
1950 1961 2.742372 ACCTTGGTCGCGATGCAC 60.742 61.111 14.06 0.00 0.00 4.57
1951 1962 2.741985 CACCTTGGTCGCGATGCA 60.742 61.111 14.06 0.00 0.00 3.96
1952 1963 3.499737 CCACCTTGGTCGCGATGC 61.500 66.667 14.06 0.00 31.35 3.91
1953 1964 1.811266 CTCCACCTTGGTCGCGATG 60.811 63.158 14.06 4.90 39.03 3.84
1954 1965 1.949847 CTCTCCACCTTGGTCGCGAT 61.950 60.000 14.06 0.00 39.03 4.58
1955 1966 2.599281 TCTCCACCTTGGTCGCGA 60.599 61.111 3.71 3.71 39.03 5.87
1956 1967 2.125912 CTCTCCACCTTGGTCGCG 60.126 66.667 0.00 0.00 39.03 5.87
1957 1968 0.034896 TTTCTCTCCACCTTGGTCGC 59.965 55.000 0.00 0.00 39.03 5.19
1958 1969 2.543777 TTTTCTCTCCACCTTGGTCG 57.456 50.000 0.00 0.00 39.03 4.79
1959 1970 2.548480 CGTTTTTCTCTCCACCTTGGTC 59.452 50.000 0.00 0.00 39.03 4.02
1960 1971 2.171870 TCGTTTTTCTCTCCACCTTGGT 59.828 45.455 0.00 0.00 39.03 3.67
1961 1972 2.846193 TCGTTTTTCTCTCCACCTTGG 58.154 47.619 0.00 0.00 39.43 3.61
1962 1973 4.893424 TTTCGTTTTTCTCTCCACCTTG 57.107 40.909 0.00 0.00 0.00 3.61
1963 1974 5.907866 TTTTTCGTTTTTCTCTCCACCTT 57.092 34.783 0.00 0.00 0.00 3.50
2015 2026 4.156556 AGTCGTTAGTTCATTGCATGCAAT 59.843 37.500 34.78 34.78 46.35 3.56
2016 2027 3.501828 AGTCGTTAGTTCATTGCATGCAA 59.498 39.130 33.57 33.57 40.47 4.08
2017 2028 3.073678 AGTCGTTAGTTCATTGCATGCA 58.926 40.909 18.46 18.46 0.00 3.96
2018 2029 3.419915 CAGTCGTTAGTTCATTGCATGC 58.580 45.455 11.82 11.82 0.00 4.06
2019 2030 3.120234 TGCAGTCGTTAGTTCATTGCATG 60.120 43.478 0.00 0.00 35.41 4.06
2020 2031 3.073678 TGCAGTCGTTAGTTCATTGCAT 58.926 40.909 0.00 0.00 35.41 3.96
2021 2032 2.488952 TGCAGTCGTTAGTTCATTGCA 58.511 42.857 0.00 0.00 37.70 4.08
2022 2033 3.120199 ACATGCAGTCGTTAGTTCATTGC 60.120 43.478 0.00 0.00 0.00 3.56
2023 2034 4.668576 ACATGCAGTCGTTAGTTCATTG 57.331 40.909 0.00 0.00 0.00 2.82
2024 2035 6.371548 ACATAACATGCAGTCGTTAGTTCATT 59.628 34.615 10.69 0.00 31.50 2.57
2025 2036 5.874810 ACATAACATGCAGTCGTTAGTTCAT 59.125 36.000 10.69 0.00 31.50 2.57
2026 2037 5.234752 ACATAACATGCAGTCGTTAGTTCA 58.765 37.500 10.69 0.00 31.50 3.18
2027 2038 5.779806 ACATAACATGCAGTCGTTAGTTC 57.220 39.130 10.69 0.00 31.50 3.01
2028 2039 6.370593 CAAACATAACATGCAGTCGTTAGTT 58.629 36.000 10.69 11.03 31.50 2.24
2029 2040 5.106712 CCAAACATAACATGCAGTCGTTAGT 60.107 40.000 10.69 7.20 31.50 2.24
2030 2041 5.106712 ACCAAACATAACATGCAGTCGTTAG 60.107 40.000 10.69 6.76 31.50 2.34
2031 2042 4.757657 ACCAAACATAACATGCAGTCGTTA 59.242 37.500 8.17 8.17 32.47 3.18
2032 2043 3.568007 ACCAAACATAACATGCAGTCGTT 59.432 39.130 0.00 0.00 0.00 3.85
2033 2044 3.146066 ACCAAACATAACATGCAGTCGT 58.854 40.909 0.00 0.00 0.00 4.34
2034 2045 3.829886 ACCAAACATAACATGCAGTCG 57.170 42.857 0.00 0.00 0.00 4.18
2035 2046 5.445939 CGACTACCAAACATAACATGCAGTC 60.446 44.000 0.00 0.00 0.00 3.51
2036 2047 4.391830 CGACTACCAAACATAACATGCAGT 59.608 41.667 0.00 0.00 0.00 4.40
2037 2048 4.727734 GCGACTACCAAACATAACATGCAG 60.728 45.833 0.00 0.00 0.00 4.41
2038 2049 3.126171 GCGACTACCAAACATAACATGCA 59.874 43.478 0.00 0.00 0.00 3.96
2039 2050 3.126171 TGCGACTACCAAACATAACATGC 59.874 43.478 0.00 0.00 0.00 4.06
2040 2051 4.937696 TGCGACTACCAAACATAACATG 57.062 40.909 0.00 0.00 0.00 3.21
2041 2052 5.001232 ACTTGCGACTACCAAACATAACAT 58.999 37.500 0.00 0.00 0.00 2.71
2042 2053 4.382291 ACTTGCGACTACCAAACATAACA 58.618 39.130 0.00 0.00 0.00 2.41
2043 2054 4.449743 TGACTTGCGACTACCAAACATAAC 59.550 41.667 0.00 0.00 0.00 1.89
2044 2055 4.633175 TGACTTGCGACTACCAAACATAA 58.367 39.130 0.00 0.00 0.00 1.90
2045 2056 4.260139 TGACTTGCGACTACCAAACATA 57.740 40.909 0.00 0.00 0.00 2.29
2046 2057 3.120321 TGACTTGCGACTACCAAACAT 57.880 42.857 0.00 0.00 0.00 2.71
2047 2058 2.605837 TGACTTGCGACTACCAAACA 57.394 45.000 0.00 0.00 0.00 2.83
2048 2059 3.496884 TCAATGACTTGCGACTACCAAAC 59.503 43.478 0.00 0.00 32.11 2.93
2049 2060 3.734463 TCAATGACTTGCGACTACCAAA 58.266 40.909 0.00 0.00 32.11 3.28
2050 2061 3.394674 TCAATGACTTGCGACTACCAA 57.605 42.857 0.00 0.00 32.11 3.67
2051 2062 3.394674 TTCAATGACTTGCGACTACCA 57.605 42.857 0.00 0.00 32.11 3.25
2052 2063 3.424962 GCTTTCAATGACTTGCGACTACC 60.425 47.826 0.00 0.00 32.11 3.18
2053 2064 3.186409 TGCTTTCAATGACTTGCGACTAC 59.814 43.478 0.00 0.00 32.11 2.73
2054 2065 3.398406 TGCTTTCAATGACTTGCGACTA 58.602 40.909 0.00 0.00 32.11 2.59
2055 2066 2.221169 TGCTTTCAATGACTTGCGACT 58.779 42.857 0.00 0.00 32.11 4.18
2056 2067 2.686558 TGCTTTCAATGACTTGCGAC 57.313 45.000 0.00 0.00 32.11 5.19
2057 2068 2.669113 GCATGCTTTCAATGACTTGCGA 60.669 45.455 11.37 0.00 32.11 5.10
2058 2069 1.652124 GCATGCTTTCAATGACTTGCG 59.348 47.619 11.37 0.00 32.11 4.85
2059 2070 2.410730 GTGCATGCTTTCAATGACTTGC 59.589 45.455 20.33 4.13 34.72 4.01
2060 2071 3.644823 TGTGCATGCTTTCAATGACTTG 58.355 40.909 20.33 0.00 0.00 3.16
2061 2072 4.053295 GTTGTGCATGCTTTCAATGACTT 58.947 39.130 20.33 0.00 0.00 3.01
2062 2073 3.553508 GGTTGTGCATGCTTTCAATGACT 60.554 43.478 20.33 0.00 0.00 3.41
2063 2074 2.733026 GGTTGTGCATGCTTTCAATGAC 59.267 45.455 20.33 6.41 0.00 3.06
2064 2075 2.288948 GGGTTGTGCATGCTTTCAATGA 60.289 45.455 20.33 0.00 0.00 2.57
2065 2076 2.070783 GGGTTGTGCATGCTTTCAATG 58.929 47.619 20.33 0.00 0.00 2.82
2066 2077 1.693062 TGGGTTGTGCATGCTTTCAAT 59.307 42.857 20.33 0.00 0.00 2.57
2067 2078 1.117994 TGGGTTGTGCATGCTTTCAA 58.882 45.000 20.33 17.33 0.00 2.69
2068 2079 0.388659 GTGGGTTGTGCATGCTTTCA 59.611 50.000 20.33 12.45 0.00 2.69
2069 2080 0.388659 TGTGGGTTGTGCATGCTTTC 59.611 50.000 20.33 9.94 0.00 2.62
2070 2081 1.050204 ATGTGGGTTGTGCATGCTTT 58.950 45.000 20.33 0.00 0.00 3.51
2071 2082 1.921982 TATGTGGGTTGTGCATGCTT 58.078 45.000 20.33 0.00 0.00 3.91
2072 2083 2.026641 GATATGTGGGTTGTGCATGCT 58.973 47.619 20.33 0.00 0.00 3.79
2073 2084 2.026641 AGATATGTGGGTTGTGCATGC 58.973 47.619 11.82 11.82 0.00 4.06
2074 2085 6.210796 CAATAAGATATGTGGGTTGTGCATG 58.789 40.000 0.00 0.00 0.00 4.06
2075 2086 5.302568 CCAATAAGATATGTGGGTTGTGCAT 59.697 40.000 0.00 0.00 0.00 3.96
2076 2087 4.644234 CCAATAAGATATGTGGGTTGTGCA 59.356 41.667 0.00 0.00 0.00 4.57
2077 2088 4.644685 ACCAATAAGATATGTGGGTTGTGC 59.355 41.667 0.00 0.00 35.32 4.57
2078 2089 6.563422 CAACCAATAAGATATGTGGGTTGTG 58.437 40.000 11.42 0.00 45.30 3.33
2079 2090 6.773976 CAACCAATAAGATATGTGGGTTGT 57.226 37.500 11.42 0.00 45.30 3.32
2081 2092 9.300681 CATATCAACCAATAAGATATGTGGGTT 57.699 33.333 11.54 0.00 43.08 4.11
2082 2093 7.394359 GCATATCAACCAATAAGATATGTGGGT 59.606 37.037 17.77 0.00 46.71 4.51
2083 2094 7.148018 GGCATATCAACCAATAAGATATGTGGG 60.148 40.741 17.77 0.00 46.71 4.61
2084 2095 7.394077 TGGCATATCAACCAATAAGATATGTGG 59.606 37.037 17.77 0.00 46.71 4.17
2085 2096 8.239314 GTGGCATATCAACCAATAAGATATGTG 58.761 37.037 17.77 2.25 46.71 3.21
2086 2097 7.944000 TGTGGCATATCAACCAATAAGATATGT 59.056 33.333 17.77 0.00 46.71 2.29
2088 2099 8.938801 TTGTGGCATATCAACCAATAAGATAT 57.061 30.769 0.00 0.00 37.79 1.63
2089 2100 8.759481 TTTGTGGCATATCAACCAATAAGATA 57.241 30.769 0.00 0.00 37.79 1.98
2090 2101 7.658525 TTTGTGGCATATCAACCAATAAGAT 57.341 32.000 0.00 0.00 37.79 2.40
2091 2102 7.039434 TGTTTTGTGGCATATCAACCAATAAGA 60.039 33.333 0.00 0.00 37.79 2.10
2092 2103 7.095910 TGTTTTGTGGCATATCAACCAATAAG 58.904 34.615 0.00 0.00 37.79 1.73
2093 2104 6.997655 TGTTTTGTGGCATATCAACCAATAA 58.002 32.000 0.00 0.00 37.79 1.40
2094 2105 6.596309 TGTTTTGTGGCATATCAACCAATA 57.404 33.333 0.00 0.00 37.79 1.90
2095 2106 5.480642 TGTTTTGTGGCATATCAACCAAT 57.519 34.783 0.00 0.00 37.79 3.16
2096 2107 4.944619 TGTTTTGTGGCATATCAACCAA 57.055 36.364 0.00 0.00 37.79 3.67
2097 2108 4.944619 TTGTTTTGTGGCATATCAACCA 57.055 36.364 0.00 0.00 0.00 3.67
2098 2109 6.610741 TTTTTGTTTTGTGGCATATCAACC 57.389 33.333 0.00 0.00 0.00 3.77
2118 2129 6.146673 CCGTACATTAACTCCTTCTCGTTTTT 59.853 38.462 0.00 0.00 0.00 1.94
2119 2130 5.636543 CCGTACATTAACTCCTTCTCGTTTT 59.363 40.000 0.00 0.00 0.00 2.43
2120 2131 5.166398 CCGTACATTAACTCCTTCTCGTTT 58.834 41.667 0.00 0.00 0.00 3.60
2121 2132 4.219288 ACCGTACATTAACTCCTTCTCGTT 59.781 41.667 0.00 0.00 0.00 3.85
2122 2133 3.760684 ACCGTACATTAACTCCTTCTCGT 59.239 43.478 0.00 0.00 0.00 4.18
2123 2134 4.103357 CACCGTACATTAACTCCTTCTCG 58.897 47.826 0.00 0.00 0.00 4.04
2124 2135 3.864003 GCACCGTACATTAACTCCTTCTC 59.136 47.826 0.00 0.00 0.00 2.87
2125 2136 3.369157 GGCACCGTACATTAACTCCTTCT 60.369 47.826 0.00 0.00 0.00 2.85
2126 2137 2.934553 GGCACCGTACATTAACTCCTTC 59.065 50.000 0.00 0.00 0.00 3.46
2127 2138 2.570302 AGGCACCGTACATTAACTCCTT 59.430 45.455 0.00 0.00 0.00 3.36
2128 2139 2.185387 AGGCACCGTACATTAACTCCT 58.815 47.619 0.00 0.00 0.00 3.69
2129 2140 2.685850 AGGCACCGTACATTAACTCC 57.314 50.000 0.00 0.00 0.00 3.85
2130 2141 4.752146 ACTTAGGCACCGTACATTAACTC 58.248 43.478 0.00 0.00 0.00 3.01
2131 2142 4.813750 ACTTAGGCACCGTACATTAACT 57.186 40.909 0.00 0.00 0.00 2.24
2132 2143 7.543947 AAATACTTAGGCACCGTACATTAAC 57.456 36.000 0.00 0.00 0.00 2.01
2133 2144 7.066043 CCAAAATACTTAGGCACCGTACATTAA 59.934 37.037 0.00 0.00 0.00 1.40
2134 2145 6.539464 CCAAAATACTTAGGCACCGTACATTA 59.461 38.462 0.00 0.00 0.00 1.90
2135 2146 5.355910 CCAAAATACTTAGGCACCGTACATT 59.644 40.000 0.00 0.00 0.00 2.71
2136 2147 4.879545 CCAAAATACTTAGGCACCGTACAT 59.120 41.667 0.00 0.00 0.00 2.29
2137 2148 4.255301 CCAAAATACTTAGGCACCGTACA 58.745 43.478 0.00 0.00 0.00 2.90
2138 2149 3.624410 CCCAAAATACTTAGGCACCGTAC 59.376 47.826 0.00 0.00 0.00 3.67
2139 2150 3.518705 TCCCAAAATACTTAGGCACCGTA 59.481 43.478 0.00 0.00 0.00 4.02
2140 2151 2.306512 TCCCAAAATACTTAGGCACCGT 59.693 45.455 0.00 0.00 0.00 4.83
2141 2152 2.993937 TCCCAAAATACTTAGGCACCG 58.006 47.619 0.00 0.00 0.00 4.94
2142 2153 7.597288 AATAATCCCAAAATACTTAGGCACC 57.403 36.000 0.00 0.00 0.00 5.01
2143 2154 7.926018 CCAAATAATCCCAAAATACTTAGGCAC 59.074 37.037 0.00 0.00 0.00 5.01
2144 2155 7.621683 ACCAAATAATCCCAAAATACTTAGGCA 59.378 33.333 0.00 0.00 0.00 4.75
2145 2156 8.018537 ACCAAATAATCCCAAAATACTTAGGC 57.981 34.615 0.00 0.00 0.00 3.93
2149 2160 9.430623 CGAAAACCAAATAATCCCAAAATACTT 57.569 29.630 0.00 0.00 0.00 2.24
2150 2161 8.590204 ACGAAAACCAAATAATCCCAAAATACT 58.410 29.630 0.00 0.00 0.00 2.12
2151 2162 8.766000 ACGAAAACCAAATAATCCCAAAATAC 57.234 30.769 0.00 0.00 0.00 1.89
2153 2164 9.430623 CTTACGAAAACCAAATAATCCCAAAAT 57.569 29.630 0.00 0.00 0.00 1.82
2154 2165 7.873505 CCTTACGAAAACCAAATAATCCCAAAA 59.126 33.333 0.00 0.00 0.00 2.44
2155 2166 7.015389 ACCTTACGAAAACCAAATAATCCCAAA 59.985 33.333 0.00 0.00 0.00 3.28
2156 2167 6.494146 ACCTTACGAAAACCAAATAATCCCAA 59.506 34.615 0.00 0.00 0.00 4.12
2157 2168 6.011481 ACCTTACGAAAACCAAATAATCCCA 58.989 36.000 0.00 0.00 0.00 4.37
2158 2169 6.151480 TCACCTTACGAAAACCAAATAATCCC 59.849 38.462 0.00 0.00 0.00 3.85
2159 2170 7.025365 GTCACCTTACGAAAACCAAATAATCC 58.975 38.462 0.00 0.00 0.00 3.01
2160 2171 7.813645 AGTCACCTTACGAAAACCAAATAATC 58.186 34.615 0.00 0.00 0.00 1.75
2161 2172 7.754851 AGTCACCTTACGAAAACCAAATAAT 57.245 32.000 0.00 0.00 0.00 1.28
2162 2173 7.571080 AAGTCACCTTACGAAAACCAAATAA 57.429 32.000 0.00 0.00 0.00 1.40
2163 2174 8.086851 GTAAGTCACCTTACGAAAACCAAATA 57.913 34.615 0.00 0.00 42.56 1.40
2164 2175 6.962686 GTAAGTCACCTTACGAAAACCAAAT 58.037 36.000 0.00 0.00 42.56 2.32
2165 2176 6.362210 GTAAGTCACCTTACGAAAACCAAA 57.638 37.500 0.00 0.00 42.56 3.28
2166 2177 5.989551 GTAAGTCACCTTACGAAAACCAA 57.010 39.130 0.00 0.00 42.56 3.67
2180 2191 2.816087 TCCGTCTAGGTGTGTAAGTCAC 59.184 50.000 0.00 0.00 42.20 3.67
2181 2192 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
2182 2193 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
2183 2194 2.444421 CCTCCGTCTAGGTGTGTAAGT 58.556 52.381 0.00 0.00 41.99 2.24
2184 2195 1.749634 CCCTCCGTCTAGGTGTGTAAG 59.250 57.143 0.00 0.00 41.99 2.34
2185 2196 1.355381 TCCCTCCGTCTAGGTGTGTAA 59.645 52.381 0.00 0.00 41.99 2.41
2186 2197 0.994247 TCCCTCCGTCTAGGTGTGTA 59.006 55.000 0.00 0.00 41.99 2.90
2187 2198 0.323542 CTCCCTCCGTCTAGGTGTGT 60.324 60.000 0.00 0.00 41.99 3.72
2188 2199 0.323542 ACTCCCTCCGTCTAGGTGTG 60.324 60.000 0.00 0.00 41.99 3.82
2189 2200 1.064832 GTACTCCCTCCGTCTAGGTGT 60.065 57.143 0.00 0.00 41.99 4.16
2190 2201 1.212441 AGTACTCCCTCCGTCTAGGTG 59.788 57.143 0.00 0.00 41.99 4.00
2191 2202 1.594129 AGTACTCCCTCCGTCTAGGT 58.406 55.000 0.00 0.00 41.99 3.08
2192 2203 2.971330 TCTAGTACTCCCTCCGTCTAGG 59.029 54.545 0.00 0.00 42.97 3.02
2193 2204 4.686191 TTCTAGTACTCCCTCCGTCTAG 57.314 50.000 0.00 0.00 0.00 2.43
2194 2205 5.643421 ATTTCTAGTACTCCCTCCGTCTA 57.357 43.478 0.00 0.00 0.00 2.59
2195 2206 4.523168 ATTTCTAGTACTCCCTCCGTCT 57.477 45.455 0.00 0.00 0.00 4.18
2196 2207 5.126707 TGAAATTTCTAGTACTCCCTCCGTC 59.873 44.000 18.64 0.00 0.00 4.79
2197 2208 5.021458 TGAAATTTCTAGTACTCCCTCCGT 58.979 41.667 18.64 0.00 0.00 4.69
2198 2209 5.593679 TGAAATTTCTAGTACTCCCTCCG 57.406 43.478 18.64 0.00 0.00 4.63
2199 2210 9.713713 GATAATGAAATTTCTAGTACTCCCTCC 57.286 37.037 18.64 0.00 37.87 4.30
2200 2211 9.713713 GGATAATGAAATTTCTAGTACTCCCTC 57.286 37.037 18.64 4.28 37.87 4.30
2201 2212 9.225682 TGGATAATGAAATTTCTAGTACTCCCT 57.774 33.333 18.64 0.00 37.87 4.20
2202 2213 9.274206 GTGGATAATGAAATTTCTAGTACTCCC 57.726 37.037 18.64 9.97 37.87 4.30
2203 2214 9.274206 GGTGGATAATGAAATTTCTAGTACTCC 57.726 37.037 18.64 15.49 37.87 3.85
2204 2215 8.979574 CGGTGGATAATGAAATTTCTAGTACTC 58.020 37.037 18.64 8.17 37.87 2.59
2220 2231 8.273756 ACAAGGTTGTACCATCGGTGGATAAT 62.274 42.308 24.73 0.05 43.33 1.28
2243 2254 1.434188 ATGTTGGTGGACAGAGGACA 58.566 50.000 0.00 0.00 32.19 4.02
2244 2255 2.567615 AGTATGTTGGTGGACAGAGGAC 59.432 50.000 0.00 0.00 32.19 3.85
2245 2256 2.902608 AGTATGTTGGTGGACAGAGGA 58.097 47.619 0.00 0.00 32.19 3.71
2268 2279 3.974719 TGGCCAATAGTGATAAAGCCAA 58.025 40.909 0.61 0.00 45.41 4.52
2269 2280 3.660970 TGGCCAATAGTGATAAAGCCA 57.339 42.857 0.61 6.06 46.16 4.75
2270 2281 4.207165 TCTTGGCCAATAGTGATAAAGCC 58.793 43.478 20.85 0.00 39.41 4.35
2288 2299 2.164422 TCGTGCTACCTCACATCTCTTG 59.836 50.000 0.00 0.00 36.80 3.02
2336 2347 1.130561 GCCACGTTAGAAACATCTGGC 59.869 52.381 7.14 7.14 38.30 4.85
2338 2349 4.685169 AATGCCACGTTAGAAACATCTG 57.315 40.909 0.00 0.00 0.00 2.90
2343 2354 5.746721 AGTTCAAAAATGCCACGTTAGAAAC 59.253 36.000 0.00 0.00 0.00 2.78
2390 2401 3.230134 AGGAATAGCTTGTGTTGCCAAA 58.770 40.909 0.00 0.00 0.00 3.28
2391 2402 2.875296 AGGAATAGCTTGTGTTGCCAA 58.125 42.857 0.00 0.00 0.00 4.52
2399 2410 4.762251 GTGGACTGAAAAGGAATAGCTTGT 59.238 41.667 0.00 0.00 0.00 3.16
2409 2420 5.072040 AGTTTTGTTGTGGACTGAAAAGG 57.928 39.130 0.00 0.00 0.00 3.11
2415 2426 2.032030 CCGCTAGTTTTGTTGTGGACTG 60.032 50.000 0.00 0.00 32.31 3.51
2424 2435 0.673644 ATCGCAGCCGCTAGTTTTGT 60.674 50.000 0.00 0.00 35.30 2.83
2425 2436 0.247814 CATCGCAGCCGCTAGTTTTG 60.248 55.000 0.00 0.00 35.30 2.44
2426 2437 0.391130 TCATCGCAGCCGCTAGTTTT 60.391 50.000 0.00 0.00 35.30 2.43
2487 2498 8.891671 ATTCGTTGTAGACCAAGTAAAGTTAA 57.108 30.769 0.00 0.00 32.51 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.