Multiple sequence alignment - TraesCS5A01G016700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G016700 chr5A 100.000 7428 0 0 1 7428 12554790 12562217 0.000000e+00 13718.0
1 TraesCS5A01G016700 chr5A 93.291 1893 109 12 225 2104 12407471 12409358 0.000000e+00 2776.0
2 TraesCS5A01G016700 chr5A 87.179 858 96 9 4248 5097 12411703 12412554 0.000000e+00 963.0
3 TraesCS5A01G016700 chr5A 86.824 850 95 10 5991 6839 12415023 12415856 0.000000e+00 933.0
4 TraesCS5A01G016700 chr5A 87.766 564 64 2 5120 5678 12414183 12414746 0.000000e+00 654.0
5 TraesCS5A01G016700 chr5A 90.686 204 16 1 1 204 12406831 12407031 1.230000e-67 268.0
6 TraesCS5A01G016700 chr5A 87.500 104 11 2 6862 6963 12415841 12415944 1.310000e-22 119.0
7 TraesCS5A01G016700 chr5A 95.455 66 2 1 5928 5992 422040423 422040358 3.670000e-18 104.0
8 TraesCS5A01G016700 chr5A 90.909 77 4 2 2610 2683 12557338 12557414 4.740000e-17 100.0
9 TraesCS5A01G016700 chr5A 90.909 77 4 2 2549 2625 12557399 12557472 4.740000e-17 100.0
10 TraesCS5A01G016700 chr5A 88.750 80 6 2 5928 6006 23817590 23817513 2.210000e-15 95.3
11 TraesCS5A01G016700 chr5D 95.944 3230 91 14 4205 7425 21013713 21016911 0.000000e+00 5203.0
12 TraesCS5A01G016700 chr5D 94.768 2179 72 16 1 2146 21011546 21013715 0.000000e+00 3354.0
13 TraesCS5A01G016700 chr5D 87.090 488 61 2 3015 3502 245774384 245773899 1.090000e-152 551.0
14 TraesCS5A01G016700 chr5D 92.377 223 17 0 3807 4029 376444956 376445178 1.200000e-82 318.0
15 TraesCS5A01G016700 chr5D 83.283 329 40 10 3207 3530 515226998 515227316 9.430000e-74 289.0
16 TraesCS5A01G016700 chr5D 83.280 311 47 5 2844 3151 334970969 334971277 1.580000e-71 281.0
17 TraesCS5A01G016700 chr5D 91.758 182 14 1 4025 4206 172647216 172647396 1.240000e-62 252.0
18 TraesCS5A01G016700 chr5D 83.936 249 27 7 2385 2626 245774815 245774573 7.500000e-55 226.0
19 TraesCS5A01G016700 chr5D 93.258 89 4 2 2757 2844 245774554 245774467 6.050000e-26 130.0
20 TraesCS5A01G016700 chr5D 89.474 76 5 3 2609 2683 245774647 245774574 7.940000e-15 93.5
21 TraesCS5A01G016700 chr5B 88.660 1843 136 29 351 2144 13857721 13859539 0.000000e+00 2178.0
22 TraesCS5A01G016700 chr5B 93.143 1473 87 6 4209 5679 13859543 13861003 0.000000e+00 2148.0
23 TraesCS5A01G016700 chr5B 92.896 1464 86 6 4209 5670 13920625 13922072 0.000000e+00 2111.0
24 TraesCS5A01G016700 chr5B 86.962 1580 171 23 4209 5773 14146616 14145057 0.000000e+00 1744.0
25 TraesCS5A01G016700 chr5B 93.969 1028 54 4 5813 6839 13922068 13923088 0.000000e+00 1548.0
26 TraesCS5A01G016700 chr5B 91.442 853 64 8 1298 2144 13919772 13920621 0.000000e+00 1162.0
27 TraesCS5A01G016700 chr5B 86.557 848 97 10 5993 6839 13861288 13862119 0.000000e+00 918.0
28 TraesCS5A01G016700 chr5B 84.190 759 108 11 6034 6789 14144865 14144116 0.000000e+00 726.0
29 TraesCS5A01G016700 chr5B 89.606 558 56 2 6870 7425 13923082 13923639 0.000000e+00 708.0
30 TraesCS5A01G016700 chr5B 90.354 508 46 3 1639 2144 14147126 14146620 0.000000e+00 664.0
31 TraesCS5A01G016700 chr5B 80.000 900 107 41 432 1262 14157358 14156463 1.380000e-166 597.0
32 TraesCS5A01G016700 chr5B 92.145 331 20 1 1300 1624 14156375 14156045 5.250000e-126 462.0
33 TraesCS5A01G016700 chr5B 89.431 246 25 1 2838 3082 703317265 703317020 7.240000e-80 309.0
34 TraesCS5A01G016700 chr5B 86.726 226 28 2 7201 7424 13867437 13867662 4.450000e-62 250.0
35 TraesCS5A01G016700 chr5B 90.556 180 17 0 4027 4206 622892709 622892530 9.630000e-59 239.0
36 TraesCS5A01G016700 chr5B 86.076 158 20 2 6862 7017 13862104 13862261 1.280000e-37 169.0
37 TraesCS5A01G016700 chr5B 84.286 70 9 2 3721 3789 454465875 454465807 4.810000e-07 67.6
38 TraesCS5A01G016700 chr7D 89.138 1473 98 14 2385 3808 528057013 528055554 0.000000e+00 1777.0
39 TraesCS5A01G016700 chr7D 82.372 312 50 5 2843 3151 111621337 111621028 4.420000e-67 267.0
40 TraesCS5A01G016700 chr7D 91.463 82 7 0 2610 2691 528056849 528056768 6.090000e-21 113.0
41 TraesCS5A01G016700 chr7D 95.455 66 3 0 5927 5992 604972525 604972460 1.020000e-18 106.0
42 TraesCS5A01G016700 chr7D 89.412 85 6 2 2549 2633 528056791 528056710 3.670000e-18 104.0
43 TraesCS5A01G016700 chr7D 97.500 40 1 0 3762 3801 630695568 630695529 1.340000e-07 69.4
44 TraesCS5A01G016700 chr7D 96.774 31 1 0 2386 2416 276511568 276511538 1.300000e-02 52.8
45 TraesCS5A01G016700 chr1D 90.662 1178 78 5 2387 3547 78919805 78920967 0.000000e+00 1537.0
46 TraesCS5A01G016700 chr1D 91.935 248 20 0 3560 3807 78920940 78921187 1.530000e-91 348.0
47 TraesCS5A01G016700 chr1D 93.151 219 15 0 3807 4025 203866422 203866204 9.300000e-84 322.0
48 TraesCS5A01G016700 chr1D 93.243 74 5 0 5921 5994 15516882 15516955 7.880000e-20 110.0
49 TraesCS5A01G016700 chr1D 89.412 85 6 2 2549 2633 78920023 78920104 3.670000e-18 104.0
50 TraesCS5A01G016700 chr3A 87.947 979 79 19 2834 3806 747038023 747037078 0.000000e+00 1118.0
51 TraesCS5A01G016700 chr7A 94.307 404 19 2 3806 4206 161735328 161734926 3.810000e-172 616.0
52 TraesCS5A01G016700 chr7A 95.690 232 10 0 2143 2374 161735548 161735317 2.530000e-99 374.0
53 TraesCS5A01G016700 chr7A 92.222 180 9 4 2144 2321 705482265 705482441 4.450000e-62 250.0
54 TraesCS5A01G016700 chr2B 82.435 575 66 15 2609 3155 238631004 238631571 3.140000e-128 470.0
55 TraesCS5A01G016700 chr2B 90.659 182 17 0 4025 4206 625066989 625066808 7.450000e-60 243.0
56 TraesCS5A01G016700 chr2B 90.608 181 17 0 4025 4205 788223741 788223561 2.680000e-59 241.0
57 TraesCS5A01G016700 chr2B 83.806 247 31 5 2386 2626 238630837 238631080 7.500000e-55 226.0
58 TraesCS5A01G016700 chr2D 81.597 576 74 18 2609 3155 640722945 640723517 1.470000e-121 448.0
59 TraesCS5A01G016700 chr2D 93.151 219 15 0 3807 4025 557094755 557094537 9.300000e-84 322.0
60 TraesCS5A01G016700 chr2D 93.151 219 15 0 3807 4025 565078857 565078639 9.300000e-84 322.0
61 TraesCS5A01G016700 chr2D 89.958 239 23 1 3807 4045 55096611 55096848 2.600000e-79 307.0
62 TraesCS5A01G016700 chr2D 84.109 258 30 8 2384 2633 640722774 640723028 9.630000e-59 239.0
63 TraesCS5A01G016700 chr2D 93.333 75 5 0 2311 2385 397172809 397172883 2.190000e-20 111.0
64 TraesCS5A01G016700 chr6D 93.833 227 14 0 3807 4033 377851377 377851151 7.140000e-90 342.0
65 TraesCS5A01G016700 chr6D 90.608 181 15 1 2143 2321 314237809 314237629 9.630000e-59 239.0
66 TraesCS5A01G016700 chr6D 94.203 69 4 0 2317 2385 279924935 279924867 1.020000e-18 106.0
67 TraesCS5A01G016700 chr7B 84.527 349 47 6 3201 3547 744305907 744306250 9.230000e-89 339.0
68 TraesCS5A01G016700 chr7B 91.667 180 13 1 2144 2321 655104438 655104617 1.600000e-61 248.0
69 TraesCS5A01G016700 chr7B 90.164 183 17 1 4025 4207 140152455 140152274 3.460000e-58 237.0
70 TraesCS5A01G016700 chr7B 90.110 182 18 0 4025 4206 484173915 484173734 3.460000e-58 237.0
71 TraesCS5A01G016700 chr7B 93.846 65 4 0 5928 5992 296330826 296330890 1.710000e-16 99.0
72 TraesCS5A01G016700 chr7B 90.698 43 3 1 3760 3801 554339939 554339897 1.000000e-03 56.5
73 TraesCS5A01G016700 chr6A 94.521 219 12 0 3807 4025 47959150 47959368 9.230000e-89 339.0
74 TraesCS5A01G016700 chr6A 94.203 69 4 0 2317 2385 409000419 409000487 1.020000e-18 106.0
75 TraesCS5A01G016700 chr6A 90.667 75 5 2 5928 6002 509277018 509276946 1.710000e-16 99.0
76 TraesCS5A01G016700 chr6A 93.846 65 4 0 5928 5992 614533978 614534042 1.710000e-16 99.0
77 TraesCS5A01G016700 chr3D 93.607 219 13 1 3807 4025 586576065 586575848 7.190000e-85 326.0
78 TraesCS5A01G016700 chr6B 83.819 309 41 9 2844 3146 124475845 124475540 1.220000e-72 285.0
79 TraesCS5A01G016700 chr6B 100.000 30 0 0 2384 2413 655765601 655765630 1.000000e-03 56.5
80 TraesCS5A01G016700 chrUn 82.692 312 47 7 2844 3151 294621466 294621774 3.420000e-68 270.0
81 TraesCS5A01G016700 chrUn 90.556 180 15 1 2144 2321 249238219 249238040 3.460000e-58 237.0
82 TraesCS5A01G016700 chr2A 92.778 180 11 1 2144 2321 623165939 623166118 7.390000e-65 259.0
83 TraesCS5A01G016700 chr2A 95.385 65 3 0 2321 2385 265106460 265106524 3.670000e-18 104.0
84 TraesCS5A01G016700 chr4D 92.308 182 13 1 4025 4206 288999855 288999675 2.660000e-64 257.0
85 TraesCS5A01G016700 chr4D 90.722 194 15 3 2130 2321 289000045 288999853 9.560000e-64 255.0
86 TraesCS5A01G016700 chr4D 90.217 184 16 1 2140 2321 344361010 344361193 9.630000e-59 239.0
87 TraesCS5A01G016700 chr4D 92.754 69 5 0 2317 2385 242784155 242784087 4.740000e-17 100.0
88 TraesCS5A01G016700 chr3B 91.209 182 16 0 4025 4206 403691620 403691439 1.600000e-61 248.0
89 TraesCS5A01G016700 chr3B 91.111 180 14 1 2144 2321 367818784 367818605 7.450000e-60 243.0
90 TraesCS5A01G016700 chr1B 94.203 69 4 0 2317 2385 214573222 214573154 1.020000e-18 106.0
91 TraesCS5A01G016700 chr4A 95.385 65 3 0 2321 2385 427168997 427169061 3.670000e-18 104.0
92 TraesCS5A01G016700 chr4A 95.385 65 3 0 2321 2385 680772425 680772361 3.670000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G016700 chr5A 12554790 12562217 7427 False 13718.000000 13718 100.000000 1 7428 1 chr5A.!!$F1 7427
1 TraesCS5A01G016700 chr5A 12406831 12415944 9113 False 952.166667 2776 88.874333 1 6963 6 chr5A.!!$F2 6962
2 TraesCS5A01G016700 chr5D 21011546 21016911 5365 False 4278.500000 5203 95.356000 1 7425 2 chr5D.!!$F5 7424
3 TraesCS5A01G016700 chr5D 245773899 245774815 916 True 250.125000 551 88.439500 2385 3502 4 chr5D.!!$R1 1117
4 TraesCS5A01G016700 chr5B 13919772 13923639 3867 False 1382.250000 2111 91.978250 1298 7425 4 chr5B.!!$F3 6127
5 TraesCS5A01G016700 chr5B 13857721 13862261 4540 False 1353.250000 2178 88.609000 351 7017 4 chr5B.!!$F2 6666
6 TraesCS5A01G016700 chr5B 14144116 14147126 3010 True 1044.666667 1744 87.168667 1639 6789 3 chr5B.!!$R4 5150
7 TraesCS5A01G016700 chr5B 14156045 14157358 1313 True 529.500000 597 86.072500 432 1624 2 chr5B.!!$R5 1192
8 TraesCS5A01G016700 chr7D 528055554 528057013 1459 True 664.666667 1777 90.004333 2385 3808 3 chr7D.!!$R5 1423
9 TraesCS5A01G016700 chr1D 78919805 78921187 1382 False 663.000000 1537 90.669667 2387 3807 3 chr1D.!!$F2 1420
10 TraesCS5A01G016700 chr3A 747037078 747038023 945 True 1118.000000 1118 87.947000 2834 3806 1 chr3A.!!$R1 972
11 TraesCS5A01G016700 chr7A 161734926 161735548 622 True 495.000000 616 94.998500 2143 4206 2 chr7A.!!$R1 2063
12 TraesCS5A01G016700 chr2B 238630837 238631571 734 False 348.000000 470 83.120500 2386 3155 2 chr2B.!!$F1 769
13 TraesCS5A01G016700 chr2D 640722774 640723517 743 False 343.500000 448 82.853000 2384 3155 2 chr2D.!!$F3 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 1378 0.038892 CCAGTTCACAAGGCATGCAC 60.039 55.0 21.36 9.1 0.00 4.57 F
1015 1500 0.948623 TGCGATGAACGACAACCAGG 60.949 55.0 0.00 0.0 45.77 4.45 F
1385 1937 1.059098 TGAAAGAAGAGCTGAGGGCA 58.941 50.0 0.00 0.0 44.79 5.36 F
2546 5402 0.990374 CATCTCTCCCCCATCCATCC 59.010 60.0 0.00 0.0 0.00 3.51 F
3351 6274 0.828022 TACCAGCAACCCGATGTAGG 59.172 55.0 0.00 0.0 0.00 3.18 F
3811 6769 0.250295 GCCTATGAGCGGCCATGTTA 60.250 55.0 2.24 0.0 41.73 2.41 F
5320 9908 0.902048 TCTCAGTGCCTAGCTGCTGT 60.902 55.0 13.43 0.0 35.28 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2452 5295 0.109272 GCTCATCTCGTCCGTGAACA 60.109 55.0 0.00 0.0 0.00 3.18 R
2514 5370 0.322975 AGAGATGCAGCTGGACGTTT 59.677 50.0 10.40 0.0 0.00 3.60 R
3167 6089 0.174389 CGCTCTACCATCAGTGCAGT 59.826 55.0 0.00 0.0 35.30 4.40 R
3798 6756 0.464452 AGGTAGTAACATGGCCGCTC 59.536 55.0 0.00 0.0 0.00 5.03 R
5016 7990 0.381801 CTCGTGCAACAAAGCCAACT 59.618 50.0 0.00 0.0 35.74 3.16 R
5413 10001 0.518636 CACGGCCAATGACACAAGAG 59.481 55.0 2.24 0.0 0.00 2.85 R
7039 11750 0.871722 GGCACATTTCACACGCTACA 59.128 50.0 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 7.713764 AAAAAGCTATGTGCCTTGTAAAAAG 57.286 32.000 0.00 0.00 44.23 2.27
189 190 2.408704 CCAGTTCTCTTTAGTTCGCACG 59.591 50.000 0.00 0.00 0.00 5.34
193 194 1.136690 CTCTTTAGTTCGCACGCACA 58.863 50.000 0.00 0.00 0.00 4.57
223 239 7.589954 GTGTACACAATTTAATCTCAACCACAC 59.410 37.037 21.14 0.00 0.00 3.82
255 675 6.918067 ATATTAGAGATCCAACGGACATGA 57.082 37.500 0.00 0.00 32.98 3.07
300 720 5.164051 CGCGCATCCATTATGACTAGTAAAG 60.164 44.000 8.75 0.00 37.86 1.85
532 968 6.432783 TCTTATTGGGTCGTGAAATCATGTTT 59.567 34.615 2.77 0.00 34.59 2.83
624 1077 9.197306 TCTGAGTGCCTCAAGTTACTAATATAA 57.803 33.333 6.39 0.00 40.18 0.98
646 1099 2.683211 ATCTTTTTGAGTGGCCCTGT 57.317 45.000 0.00 0.00 0.00 4.00
664 1117 2.729882 CTGTCGAAAGGGAACAACGTAG 59.270 50.000 0.00 0.00 0.00 3.51
719 1198 9.878667 TCAAACCTGTACATAATTTCTCGAATA 57.121 29.630 0.00 0.00 0.00 1.75
807 1289 6.446318 GTGAATTTTGCATTCAGTGTTCCTA 58.554 36.000 1.47 0.00 38.54 2.94
896 1378 0.038892 CCAGTTCACAAGGCATGCAC 60.039 55.000 21.36 9.10 0.00 4.57
919 1401 6.603201 CACCACCAACCTTAACATTATCAGAT 59.397 38.462 0.00 0.00 0.00 2.90
1015 1500 0.948623 TGCGATGAACGACAACCAGG 60.949 55.000 0.00 0.00 45.77 4.45
1070 1555 2.885266 GGGACTTCTTCCTTGGTTTCAC 59.115 50.000 0.00 0.00 45.09 3.18
1085 1570 1.541310 TTCACGCCATTCTCTCCGGT 61.541 55.000 0.00 0.00 0.00 5.28
1200 1694 9.953825 CAACTCTTTATAGATGTCGTTTTACAC 57.046 33.333 0.00 0.00 30.75 2.90
1202 1696 9.924650 ACTCTTTATAGATGTCGTTTTACACTT 57.075 29.630 0.00 0.00 30.75 3.16
1213 1707 7.037438 TGTCGTTTTACACTTTGTAGAAGTCT 58.963 34.615 0.00 0.00 33.92 3.24
1273 1786 8.883954 TGAAGTATGTTTTTCATGCAAAATGA 57.116 26.923 6.54 0.00 40.71 2.57
1274 1787 8.980610 TGAAGTATGTTTTTCATGCAAAATGAG 58.019 29.630 6.54 0.00 40.71 2.90
1275 1788 8.891671 AAGTATGTTTTTCATGCAAAATGAGT 57.108 26.923 6.54 0.00 40.71 3.41
1276 1789 9.979578 AAGTATGTTTTTCATGCAAAATGAGTA 57.020 25.926 6.54 0.00 40.71 2.59
1277 1790 9.410556 AGTATGTTTTTCATGCAAAATGAGTAC 57.589 29.630 6.54 7.62 40.71 2.73
1278 1791 9.410556 GTATGTTTTTCATGCAAAATGAGTACT 57.589 29.630 6.54 0.00 38.66 2.73
1279 1792 8.891671 ATGTTTTTCATGCAAAATGAGTACTT 57.108 26.923 6.54 0.00 33.82 2.24
1385 1937 1.059098 TGAAAGAAGAGCTGAGGGCA 58.941 50.000 0.00 0.00 44.79 5.36
1387 1939 2.083002 GAAAGAAGAGCTGAGGGCAAG 58.917 52.381 0.00 0.00 44.79 4.01
1541 2093 2.434185 GCCCGCGATCTTCACACA 60.434 61.111 8.23 0.00 0.00 3.72
1631 2189 7.872113 AATTAGAATCTCAAAGACATGGGTC 57.128 36.000 0.00 0.00 44.66 4.46
1644 2205 2.039746 ACATGGGTCGGTGAGATTTTCA 59.960 45.455 0.00 0.00 0.00 2.69
1743 2305 5.123820 CGAAGGAAAGATTACCTGCAATGAA 59.876 40.000 0.00 0.00 36.56 2.57
2126 4969 6.432403 AGGCAAAATTTCACCTTTTATCCA 57.568 33.333 6.20 0.00 0.00 3.41
2129 4972 6.316140 GGCAAAATTTCACCTTTTATCCATCC 59.684 38.462 0.00 0.00 0.00 3.51
2146 4989 9.733556 TTATCCATCCGTGCAATTTATATTACT 57.266 29.630 0.00 0.00 0.00 2.24
2151 4994 6.597562 TCCGTGCAATTTATATTACTCCCTT 58.402 36.000 0.00 0.00 0.00 3.95
2188 5031 4.526970 AGGCCACAAACTCATATTACAGG 58.473 43.478 5.01 0.00 0.00 4.00
2191 5034 6.062095 GGCCACAAACTCATATTACAGGTAT 58.938 40.000 0.00 0.00 0.00 2.73
2196 5039 9.599866 CACAAACTCATATTACAGGTATCAAGA 57.400 33.333 0.00 0.00 0.00 3.02
2244 5087 5.619625 ATGTTGCAAGCTAGTCTTTTCTC 57.380 39.130 0.00 0.00 31.27 2.87
2295 5138 1.470494 TGCTCTTCAACGCACAACAAA 59.530 42.857 0.00 0.00 0.00 2.83
2335 5178 3.562182 TGGTTGAGACTAGTCACAGTGA 58.438 45.455 24.44 7.31 32.14 3.41
2382 5225 9.650371 CATGCACATGTTATTAGTGTATGTTAC 57.350 33.333 12.58 0.00 45.29 2.50
2451 5294 2.736995 GCTACCAACGCACTCGCA 60.737 61.111 0.00 0.00 39.84 5.10
2452 5295 2.100631 GCTACCAACGCACTCGCAT 61.101 57.895 0.00 0.00 39.84 4.73
2546 5402 0.990374 CATCTCTCCCCCATCCATCC 59.010 60.000 0.00 0.00 0.00 3.51
2578 5434 2.748647 TCGCCGACGATGAGACCA 60.749 61.111 0.00 0.00 45.12 4.02
2596 5452 1.608025 CCACCATCCATTCCCGTATCG 60.608 57.143 0.00 0.00 0.00 2.92
2626 5482 3.677284 CTGCAGCCCACATCTCGCT 62.677 63.158 0.00 0.00 0.00 4.93
2629 5485 3.005539 AGCCCACATCTCGCTGGT 61.006 61.111 0.00 0.00 0.00 4.00
2683 5539 2.267006 CTGCAGCCCACATCTCGT 59.733 61.111 0.00 0.00 0.00 4.18
2725 5581 2.890474 CGACCAGCGATTTCCCCG 60.890 66.667 0.00 0.00 44.57 5.73
2730 5586 2.125106 AGCGATTTCCCCGTGAGC 60.125 61.111 0.00 0.00 0.00 4.26
2878 5774 1.098869 TCTTGTTTTGCTGCAACCGA 58.901 45.000 15.72 7.69 0.00 4.69
2984 5901 4.734398 TTGCATCCAACAAGACAAAAGT 57.266 36.364 0.00 0.00 0.00 2.66
2989 5906 5.232838 GCATCCAACAAGACAAAAGTTTCTG 59.767 40.000 0.00 0.00 0.00 3.02
3061 5978 2.593346 TGGCTTTGCAACAAACGATT 57.407 40.000 0.00 0.00 0.00 3.34
3080 5997 4.439449 CGATTTGTTTTCACGCAAAGCTAA 59.561 37.500 0.00 0.00 38.41 3.09
3167 6089 1.405526 GCTGCATCCTCGGAGTGTTTA 60.406 52.381 4.02 0.00 0.00 2.01
3169 6091 1.899814 TGCATCCTCGGAGTGTTTACT 59.100 47.619 4.02 0.00 40.66 2.24
3180 6102 3.403038 GAGTGTTTACTGCACTGATGGT 58.597 45.455 2.49 0.00 45.99 3.55
3181 6103 4.562757 GGAGTGTTTACTGCACTGATGGTA 60.563 45.833 2.49 0.00 45.99 3.25
3351 6274 0.828022 TACCAGCAACCCGATGTAGG 59.172 55.000 0.00 0.00 0.00 3.18
3384 6307 1.080093 CTCGTCGCTTTGGGTGCTA 60.080 57.895 0.00 0.00 0.00 3.49
3387 6310 2.740826 TCGCTTTGGGTGCTACGC 60.741 61.111 0.00 0.00 0.00 4.42
3435 6358 2.765807 ATCACCAGGCGAGGGAGG 60.766 66.667 4.11 0.00 0.00 4.30
3665 6620 1.952990 AGAGATGCGATGTCGATCTGT 59.047 47.619 16.39 12.14 43.02 3.41
3748 6706 3.181505 CGGCTACCAATTGTTAAATCGCA 60.182 43.478 4.43 0.00 0.00 5.10
3809 6767 2.111878 GCCTATGAGCGGCCATGT 59.888 61.111 2.24 0.00 41.73 3.21
3810 6768 1.526917 GCCTATGAGCGGCCATGTT 60.527 57.895 2.24 0.00 41.73 2.71
3811 6769 0.250295 GCCTATGAGCGGCCATGTTA 60.250 55.000 2.24 0.00 41.73 2.41
3812 6770 1.512926 CCTATGAGCGGCCATGTTAC 58.487 55.000 2.24 0.00 0.00 2.50
3813 6771 1.070758 CCTATGAGCGGCCATGTTACT 59.929 52.381 2.24 0.00 0.00 2.24
3827 6785 3.992943 TGTTACTACCTCCACAATGGG 57.007 47.619 0.00 0.00 38.32 4.00
3937 6895 7.448420 ACTAGCTATGTTATCACATGCATCTT 58.552 34.615 0.00 0.00 43.92 2.40
4032 6990 7.275183 TCTCATTGTGGGTAGTCTGATTAATG 58.725 38.462 0.00 0.00 0.00 1.90
4062 7020 1.128188 ACACCAACCCTCTCACTCCC 61.128 60.000 0.00 0.00 0.00 4.30
4088 7046 6.490040 ACATGCATGTAAGGGGTATTAATGTC 59.510 38.462 30.50 0.00 39.68 3.06
4130 7088 5.273944 GCAAGCCTTATCAATTTTACCTCG 58.726 41.667 0.00 0.00 0.00 4.63
4144 7102 8.664798 CAATTTTACCTCGATTGATGTTAGTGA 58.335 33.333 0.00 0.00 33.67 3.41
4158 7116 6.816640 TGATGTTAGTGACCTTGTATAGTTGC 59.183 38.462 0.00 0.00 0.00 4.17
4161 7119 6.993308 TGTTAGTGACCTTGTATAGTTGCAAA 59.007 34.615 0.00 0.00 0.00 3.68
4163 7121 8.512138 GTTAGTGACCTTGTATAGTTGCAAATT 58.488 33.333 4.05 0.00 0.00 1.82
4164 7122 9.727859 TTAGTGACCTTGTATAGTTGCAAATTA 57.272 29.630 4.05 0.00 0.00 1.40
4181 7139 5.458779 GCAAATTATAAATTCGACAGTGGCC 59.541 40.000 0.00 0.00 0.00 5.36
4189 7147 2.953466 TCGACAGTGGCCTTGTATAC 57.047 50.000 12.56 0.00 0.00 1.47
4197 7155 5.772672 ACAGTGGCCTTGTATACAAAAATGA 59.227 36.000 18.55 0.00 35.15 2.57
4206 7164 8.674607 CCTTGTATACAAAAATGAAGGGAGTAC 58.325 37.037 18.55 0.00 35.15 2.73
4207 7165 9.226606 CTTGTATACAAAAATGAAGGGAGTACA 57.773 33.333 18.55 0.00 35.15 2.90
4208 7166 8.556213 TGTATACAAAAATGAAGGGAGTACAC 57.444 34.615 2.20 0.00 0.00 2.90
4209 7167 7.608761 TGTATACAAAAATGAAGGGAGTACACC 59.391 37.037 2.20 0.00 0.00 4.16
4220 7178 5.422214 AGGGAGTACACCACTAAAATCTG 57.578 43.478 11.69 0.00 37.72 2.90
4224 7182 5.817816 GGAGTACACCACTAAAATCTGATGG 59.182 44.000 4.24 0.00 37.72 3.51
4451 7414 8.218441 CGAATCGTACTCACAAAATTCTTTACA 58.782 33.333 0.00 0.00 0.00 2.41
4522 7485 1.743252 GAAAGCAGGCTCCTCACCG 60.743 63.158 0.00 0.00 0.00 4.94
4637 7605 9.717942 CTTTCTATTCTTTATAGGTGGGATGAG 57.282 37.037 0.00 0.00 37.42 2.90
4915 7889 2.949106 CCACTTGAGGCTTGCACG 59.051 61.111 0.00 0.00 0.00 5.34
4916 7890 2.253452 CACTTGAGGCTTGCACGC 59.747 61.111 6.64 6.64 0.00 5.34
5029 8003 5.830912 TCATCTTAACAGTTGGCTTTGTTG 58.169 37.500 10.58 0.00 37.98 3.33
5087 8061 8.301730 TGTCGTCTTAAAAGTTAACACCTATG 57.698 34.615 8.61 0.00 0.00 2.23
5266 9854 1.000274 GCAAAATGGCGTGAGGAAAGT 60.000 47.619 0.00 0.00 0.00 2.66
5281 9869 2.876550 GGAAAGTGACACACCTGTTACC 59.123 50.000 8.59 0.00 37.56 2.85
5305 9893 1.260538 AGGAGCACCTGCGATTCTCA 61.261 55.000 0.22 0.00 45.92 3.27
5317 9905 1.580815 GATTCTCAGTGCCTAGCTGC 58.419 55.000 0.00 0.00 34.21 5.25
5320 9908 0.902048 TCTCAGTGCCTAGCTGCTGT 60.902 55.000 13.43 0.00 35.28 4.40
5413 10001 5.246307 ACCTATCCTAAAATTATGCGAGCC 58.754 41.667 0.00 0.00 0.00 4.70
5651 10245 9.732130 TGCCAATTAAAAGCCAATTAAGTAAAT 57.268 25.926 0.00 0.00 0.00 1.40
5840 10523 4.277476 TCCTCAGAGAAGTTTGGCAAAAA 58.723 39.130 15.29 0.00 0.00 1.94
6009 10692 8.431910 AGTGAGTAGAGAAGTTATTTAACCCA 57.568 34.615 0.00 0.00 36.88 4.51
6328 11031 1.207089 CTAGAGGCGGTGGTGAATTCA 59.793 52.381 3.38 3.38 0.00 2.57
6508 11211 5.124297 TCACCACTCATGTATCATGCAAAAG 59.876 40.000 0.00 1.04 0.00 2.27
6514 11217 6.016024 ACTCATGTATCATGCAAAAGTTGTGT 60.016 34.615 0.00 0.00 0.00 3.72
6515 11218 7.174772 ACTCATGTATCATGCAAAAGTTGTGTA 59.825 33.333 0.00 0.00 0.00 2.90
6561 11265 5.818136 AAAATCGTACTATGTGCAAGCAT 57.182 34.783 0.00 0.00 0.00 3.79
6620 11326 9.191479 AGCAAGTAGTATCTAGACTAAACATGT 57.809 33.333 0.00 0.00 33.74 3.21
6654 11360 3.311871 CACTACTTTGCATCTGGATCTGC 59.688 47.826 0.00 0.00 38.87 4.26
6707 11413 1.328279 GAGCTTCTCTCCTAGCCTCC 58.672 60.000 0.00 0.00 38.14 4.30
6709 11415 0.105709 GCTTCTCTCCTAGCCTCCCT 60.106 60.000 0.00 0.00 0.00 4.20
6714 11420 1.011595 TCTCCTAGCCTCCCTGAGTT 58.988 55.000 0.00 0.00 0.00 3.01
6789 11496 0.951558 CCAGCGTTTGTAGTGCCTTT 59.048 50.000 0.00 0.00 0.00 3.11
6790 11497 1.334960 CCAGCGTTTGTAGTGCCTTTG 60.335 52.381 0.00 0.00 0.00 2.77
6791 11498 0.951558 AGCGTTTGTAGTGCCTTTGG 59.048 50.000 0.00 0.00 0.00 3.28
6829 11536 1.587547 GAGCCAGTCGATCAATTCCC 58.412 55.000 0.00 0.00 0.00 3.97
6842 11549 5.617751 CGATCAATTCCCGATGCTTTATTCC 60.618 44.000 0.00 0.00 0.00 3.01
6847 11557 3.702792 TCCCGATGCTTTATTCCCAAAA 58.297 40.909 0.00 0.00 0.00 2.44
6945 11655 6.549433 TGGTTATCCCTTATTGTTAGTCGT 57.451 37.500 0.00 0.00 0.00 4.34
6969 11679 4.606961 TGACCGAGAAAAACAAAATCAGC 58.393 39.130 0.00 0.00 0.00 4.26
6972 11682 3.550030 CCGAGAAAAACAAAATCAGCCGT 60.550 43.478 0.00 0.00 0.00 5.68
7020 11731 5.509498 AGTGCTAGATCTGGGATCTCTATC 58.491 45.833 12.53 0.00 0.00 2.08
7110 11821 4.508861 ACAACACTTGCAGCATGAAAAATC 59.491 37.500 14.99 0.00 39.69 2.17
7178 11889 4.942761 TTTGCAGCAAGAGAAAATCCTT 57.057 36.364 8.12 0.00 0.00 3.36
7199 11910 6.709846 TCCTTTGGAAGCATAAAACCAAAATG 59.290 34.615 0.00 0.00 46.77 2.32
7238 11949 5.630061 CAACATTGTGCGAATACTCATGAA 58.370 37.500 0.00 0.00 0.00 2.57
7377 12089 1.594862 GGCTCATCGACCAAGAATTCG 59.405 52.381 0.00 0.00 36.55 3.34
7425 12138 2.564062 CCCGTAACCCTAGAACTGTTCA 59.436 50.000 21.50 7.70 0.00 3.18
7426 12139 3.197116 CCCGTAACCCTAGAACTGTTCAT 59.803 47.826 21.50 9.84 0.00 2.57
7427 12140 4.323257 CCCGTAACCCTAGAACTGTTCATT 60.323 45.833 21.50 5.50 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.401766 CCACAGCCCAGAACGCATC 61.402 63.158 0.00 0.00 0.00 3.91
126 127 9.573133 CTAATTTCCTTTTTACAAGGCACATAG 57.427 33.333 0.00 0.00 37.34 2.23
135 136 8.450434 AGGTACTCCCTAATTTCCTTTTTACAA 58.550 33.333 0.00 0.00 43.87 2.41
136 137 7.992295 AGGTACTCCCTAATTTCCTTTTTACA 58.008 34.615 0.00 0.00 43.87 2.41
223 239 7.275779 CCGTTGGATCTCTAATATAATGAACCG 59.724 40.741 0.00 0.00 0.00 4.44
228 648 9.091784 CATGTCCGTTGGATCTCTAATATAATG 57.908 37.037 0.00 0.00 32.73 1.90
277 697 5.696724 ACTTTACTAGTCATAATGGATGCGC 59.303 40.000 0.00 0.00 35.29 6.09
441 863 6.485313 AGGTTACAAAACTTGATCGAATGTCA 59.515 34.615 0.00 0.00 35.81 3.58
532 968 4.900684 TGGATCTCGAAAACACAATGGTA 58.099 39.130 0.00 0.00 0.00 3.25
624 1077 3.160269 CAGGGCCACTCAAAAAGATTCT 58.840 45.455 6.18 0.00 0.00 2.40
646 1099 4.218200 TCATACTACGTTGTTCCCTTTCGA 59.782 41.667 8.18 0.00 0.00 3.71
807 1289 6.096423 ACACGTGTATAATACTGGAGACACAT 59.904 38.462 21.98 0.00 37.61 3.21
896 1378 8.210946 TCTATCTGATAATGTTAAGGTTGGTGG 58.789 37.037 0.00 0.00 0.00 4.61
919 1401 4.200092 TCGAGCTCAGCTGATTACTTCTA 58.800 43.478 18.63 0.58 39.88 2.10
926 1408 0.244994 ACGTTCGAGCTCAGCTGATT 59.755 50.000 18.63 8.84 39.88 2.57
1015 1500 3.670377 GTGAAACCGGTGGCTGCC 61.670 66.667 8.52 12.87 0.00 4.85
1070 1555 2.892425 GCACCGGAGAGAATGGCG 60.892 66.667 9.46 0.00 0.00 5.69
1085 1570 6.208402 TGCTGATTAAATTTAGTTCACCTGCA 59.792 34.615 14.70 14.70 0.00 4.41
1273 1786 5.148651 AGGTTATGCTTCGACAAAGTACT 57.851 39.130 0.00 0.00 37.31 2.73
1274 1787 5.451828 GAGGTTATGCTTCGACAAAGTAC 57.548 43.478 0.00 0.00 37.31 2.73
1385 1937 6.793505 ACAGAACCCGAATCTACTATTCTT 57.206 37.500 0.00 0.00 0.00 2.52
1387 1939 6.570692 TCAACAGAACCCGAATCTACTATTC 58.429 40.000 0.00 0.00 0.00 1.75
1541 2093 3.674955 GCAAATAAAATCGAAGGGCCGTT 60.675 43.478 11.21 11.21 0.00 4.44
1625 2183 3.433306 TTGAAAATCTCACCGACCCAT 57.567 42.857 0.00 0.00 32.21 4.00
1668 2229 4.295870 CGGCATTGTCATGTATAGTACGT 58.704 43.478 0.00 0.00 32.28 3.57
1976 2538 5.127519 TCCAAAATGGCATCATTCCTTGTAG 59.872 40.000 0.00 0.00 42.29 2.74
2126 4969 6.779860 AGGGAGTAATATAAATTGCACGGAT 58.220 36.000 0.00 0.00 30.73 4.18
2129 4972 7.490962 TGAAGGGAGTAATATAAATTGCACG 57.509 36.000 0.00 0.00 30.73 5.34
2146 4989 7.286775 GTGGCCTTGTATATAAAAATGAAGGGA 59.713 37.037 3.32 0.00 31.03 4.20
2151 4994 9.030452 AGTTTGTGGCCTTGTATATAAAAATGA 57.970 29.630 3.32 0.00 0.00 2.57
2224 5067 4.068599 AGGAGAAAAGACTAGCTTGCAAC 58.931 43.478 0.00 0.00 36.80 4.17
2244 5087 6.305399 CACATTAATTAACACGTCAAGCAAGG 59.695 38.462 0.00 0.00 0.00 3.61
2295 5138 3.054361 ACCAACAAGGAGTGAGAGTTGTT 60.054 43.478 0.00 0.00 42.45 2.83
2335 5178 7.614583 TGCATGTTACTACTCTAAGTTACTCCT 59.385 37.037 0.00 0.00 31.82 3.69
2369 5212 7.466746 ACGTTTCCCTAGTAACATACACTAA 57.533 36.000 0.00 0.00 0.00 2.24
2451 5294 1.469940 GCTCATCTCGTCCGTGAACAT 60.470 52.381 0.00 0.00 0.00 2.71
2452 5295 0.109272 GCTCATCTCGTCCGTGAACA 60.109 55.000 0.00 0.00 0.00 3.18
2514 5370 0.322975 AGAGATGCAGCTGGACGTTT 59.677 50.000 10.40 0.00 0.00 3.60
2567 5423 1.500474 ATGGATGGTGGTCTCATCGT 58.500 50.000 0.00 0.00 41.24 3.73
2569 5425 2.487986 GGGAATGGATGGTGGTCTCATC 60.488 54.545 0.00 0.00 40.02 2.92
2570 5426 1.496429 GGGAATGGATGGTGGTCTCAT 59.504 52.381 0.00 0.00 0.00 2.90
2571 5427 0.918983 GGGAATGGATGGTGGTCTCA 59.081 55.000 0.00 0.00 0.00 3.27
2578 5434 1.618837 CTCGATACGGGAATGGATGGT 59.381 52.381 0.00 0.00 0.00 3.55
2626 5482 1.561769 AATGGATGGCGGTCTCACCA 61.562 55.000 0.00 0.00 38.47 4.17
2629 5485 1.526887 GGAATGGATGGCGGTCTCA 59.473 57.895 0.00 0.00 0.00 3.27
2710 5566 2.046314 CACGGGGAAATCGCTGGT 60.046 61.111 10.58 1.18 39.24 4.00
2725 5581 2.743928 CAGCGACAAGGGGCTCAC 60.744 66.667 0.00 0.00 37.41 3.51
2766 5640 2.282180 ATGCGCTGGGGAAAACGT 60.282 55.556 9.73 0.00 0.00 3.99
2871 5767 3.428534 CCAGCTTTTTATTTGTCGGTTGC 59.571 43.478 0.00 0.00 0.00 4.17
2878 5774 5.983540 TGTTGGTTCCAGCTTTTTATTTGT 58.016 33.333 7.17 0.00 0.00 2.83
2951 5868 0.810648 GGATGCAACAAATGAGGCGA 59.189 50.000 0.00 0.00 0.00 5.54
2984 5901 1.452145 AAAAAGCTCGCCGGCAGAAA 61.452 50.000 28.98 7.48 34.17 2.52
3061 5978 3.549873 GCTTTAGCTTTGCGTGAAAACAA 59.450 39.130 0.00 0.00 38.21 2.83
3167 6089 0.174389 CGCTCTACCATCAGTGCAGT 59.826 55.000 0.00 0.00 35.30 4.40
3169 6091 1.153568 GCGCTCTACCATCAGTGCA 60.154 57.895 0.00 0.00 44.15 4.57
3180 6102 2.487372 TGCAACAAAATCATGCGCTCTA 59.513 40.909 9.73 0.00 42.91 2.43
3181 6103 1.270274 TGCAACAAAATCATGCGCTCT 59.730 42.857 9.73 0.00 42.91 4.09
3213 6135 2.347661 CGATCGCCGATTGTAGCTTTTC 60.348 50.000 0.26 0.00 41.76 2.29
3314 6236 3.381908 TGGTAGCAACAAAAATGTCCGTT 59.618 39.130 0.00 0.00 0.00 4.44
3351 6274 1.807573 CGAGCTCGCCAGAAGGAAC 60.808 63.158 25.07 0.00 36.89 3.62
3550 6484 4.056125 CACTCGCCGTCTCTGCCA 62.056 66.667 0.00 0.00 0.00 4.92
3798 6756 0.464452 AGGTAGTAACATGGCCGCTC 59.536 55.000 0.00 0.00 0.00 5.03
3808 6766 3.994931 ACCCATTGTGGAGGTAGTAAC 57.005 47.619 0.00 0.00 40.96 2.50
3813 6771 4.427637 TGTTACTACCCATTGTGGAGGTA 58.572 43.478 0.00 0.00 40.96 3.08
4008 6966 7.011763 CACATTAATCAGACTACCCACAATGAG 59.988 40.741 0.00 0.00 0.00 2.90
4010 6968 6.038603 CCACATTAATCAGACTACCCACAATG 59.961 42.308 0.00 0.00 0.00 2.82
4062 7020 6.265196 ACATTAATACCCCTTACATGCATGTG 59.735 38.462 36.72 23.86 41.89 3.21
4088 7046 3.920144 CTCGTAGTAGCAACCGAGG 57.080 57.895 0.00 0.00 42.21 4.63
4130 7088 9.601217 AACTATACAAGGTCACTAACATCAATC 57.399 33.333 0.00 0.00 0.00 2.67
4158 7116 6.795399 AGGCCACTGTCGAATTTATAATTTG 58.205 36.000 5.01 0.00 0.00 2.32
4161 7119 5.885912 ACAAGGCCACTGTCGAATTTATAAT 59.114 36.000 5.01 0.00 0.00 1.28
4163 7121 4.839121 ACAAGGCCACTGTCGAATTTATA 58.161 39.130 5.01 0.00 0.00 0.98
4164 7122 3.686016 ACAAGGCCACTGTCGAATTTAT 58.314 40.909 5.01 0.00 0.00 1.40
4181 7139 9.226606 TGTACTCCCTTCATTTTTGTATACAAG 57.773 33.333 17.36 7.24 37.15 3.16
4189 7147 4.827284 AGTGGTGTACTCCCTTCATTTTTG 59.173 41.667 11.36 0.00 33.17 2.44
4197 7155 5.546499 TCAGATTTTAGTGGTGTACTCCCTT 59.454 40.000 11.36 2.52 40.89 3.95
4206 7164 4.264253 TCTGCCATCAGATTTTAGTGGTG 58.736 43.478 0.00 0.00 43.95 4.17
4207 7165 4.574674 TCTGCCATCAGATTTTAGTGGT 57.425 40.909 0.00 0.00 43.95 4.16
4220 7178 2.292267 CATAGGGTTGTGTCTGCCATC 58.708 52.381 0.00 0.00 0.00 3.51
4224 7182 1.032114 GGGCATAGGGTTGTGTCTGC 61.032 60.000 0.00 0.00 0.00 4.26
4270 7228 4.637091 TCAGATTGTAATGGTACGACGAGA 59.363 41.667 0.00 0.00 32.40 4.04
4323 7286 3.788227 ATGGTCTTGGAGTTGCAGTTA 57.212 42.857 0.00 0.00 0.00 2.24
4522 7485 2.206576 AGAGACCTTTCCATTGCCAC 57.793 50.000 0.00 0.00 0.00 5.01
4637 7605 2.970974 GAGGTGTTCAGCGGCTTGC 61.971 63.158 0.00 0.00 46.98 4.01
5016 7990 0.381801 CTCGTGCAACAAAGCCAACT 59.618 50.000 0.00 0.00 35.74 3.16
5148 9732 9.317936 AGTTGATTGTCTACATACATACACATG 57.682 33.333 0.00 0.00 38.21 3.21
5195 9783 6.420903 TCGATTAGCTGCATAAGTACAATGAC 59.579 38.462 11.29 4.76 0.00 3.06
5266 9854 1.481363 TCAACGGTAACAGGTGTGTCA 59.519 47.619 0.00 0.00 35.08 3.58
5281 9869 2.842394 ATCGCAGGTGCTCCTCAACG 62.842 60.000 3.81 9.46 43.07 4.10
5305 9893 1.673665 GCAACAGCAGCTAGGCACT 60.674 57.895 0.00 0.00 46.37 4.40
5413 10001 0.518636 CACGGCCAATGACACAAGAG 59.481 55.000 2.24 0.00 0.00 2.85
5994 10677 8.900781 GGTATCCTTCTTGGGTTAAATAACTTC 58.099 37.037 3.55 0.00 36.47 3.01
6009 10692 3.379452 CAGAGACCAGGGTATCCTTCTT 58.621 50.000 9.36 0.00 42.67 2.52
6292 10995 2.781595 CTAGGAGCGGCGTTGTTGGT 62.782 60.000 9.37 0.00 0.00 3.67
6508 11211 4.992951 AGTTTTCTCACGGGTATACACAAC 59.007 41.667 5.85 0.21 0.00 3.32
6514 11217 7.649533 TTCTCATAGTTTTCTCACGGGTATA 57.350 36.000 0.00 0.00 0.00 1.47
6515 11218 6.540438 TTCTCATAGTTTTCTCACGGGTAT 57.460 37.500 0.00 0.00 0.00 2.73
6544 11248 5.905480 TCATTATGCTTGCACATAGTACG 57.095 39.130 0.00 0.00 34.15 3.67
6620 11326 4.039852 TGCAAAGTAGTGTCTGGTGTGATA 59.960 41.667 0.00 0.00 0.00 2.15
6654 11360 1.805869 CTGTCAGGAACCAGCTTCTG 58.194 55.000 0.00 0.00 0.00 3.02
6707 11413 2.022934 GGAGGTACCGACTAACTCAGG 58.977 57.143 6.18 0.00 40.63 3.86
6709 11415 1.355381 TGGGAGGTACCGACTAACTCA 59.645 52.381 6.18 0.00 40.63 3.41
6714 11420 1.033746 CGCTTGGGAGGTACCGACTA 61.034 60.000 6.18 0.00 40.11 2.59
6789 11496 1.691434 GGAAAATGTTCAACCCAGCCA 59.309 47.619 0.00 0.00 35.25 4.75
6790 11497 1.336795 CGGAAAATGTTCAACCCAGCC 60.337 52.381 0.00 0.00 35.25 4.85
6791 11498 1.611491 TCGGAAAATGTTCAACCCAGC 59.389 47.619 0.00 0.00 35.25 4.85
6792 11499 2.351738 GCTCGGAAAATGTTCAACCCAG 60.352 50.000 0.00 0.00 35.25 4.45
6793 11500 1.611491 GCTCGGAAAATGTTCAACCCA 59.389 47.619 0.00 0.00 35.25 4.51
6864 11574 5.708230 ACACCATAAAAGGTAAAGCATCGAA 59.292 36.000 0.00 0.00 40.77 3.71
6935 11645 2.497138 TCTCGGTCAGACGACTAACAA 58.503 47.619 0.00 0.00 42.21 2.83
6945 11655 5.505654 GCTGATTTTGTTTTTCTCGGTCAGA 60.506 40.000 0.00 0.00 34.10 3.27
6969 11679 3.369381 CCAACTATGGCAGAGACGG 57.631 57.895 17.28 11.37 40.58 4.79
7039 11750 0.871722 GGCACATTTCACACGCTACA 59.128 50.000 0.00 0.00 0.00 2.74
7094 11805 5.865013 CACACATAGATTTTTCATGCTGCAA 59.135 36.000 6.36 0.00 0.00 4.08
7178 11889 7.337942 ACAAACATTTTGGTTTTATGCTTCCAA 59.662 29.630 3.82 0.00 38.86 3.53
7199 11910 5.290643 ACAATGTTGCACACATGTTACAAAC 59.709 36.000 13.05 0.00 46.23 2.93
7238 11949 3.752222 TGCGGACGGTATTTGTTGTTTAT 59.248 39.130 0.00 0.00 0.00 1.40
7310 12021 6.720309 TCCATTGTTGATAATGAGAGGTCAA 58.280 36.000 2.50 0.00 39.79 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.