Multiple sequence alignment - TraesCS5A01G016500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G016500 chr5A 100.000 3566 0 0 1 3566 12195214 12191649 0.000000e+00 6586
1 TraesCS5A01G016500 chr5A 93.633 267 14 2 519 783 642209959 642209694 2.580000e-106 396
2 TraesCS5A01G016500 chr5B 96.400 2722 97 1 846 3566 13776286 13773565 0.000000e+00 4482
3 TraesCS5A01G016500 chr5B 90.463 367 20 7 1 352 13776650 13776284 1.500000e-128 470
4 TraesCS5A01G016500 chr5B 91.379 290 18 5 495 779 296438357 296438070 1.200000e-104 390
5 TraesCS5A01G016500 chr1D 89.720 2675 249 12 907 3566 407672636 407669973 0.000000e+00 3393
6 TraesCS5A01G016500 chr1D 88.125 2602 263 29 993 3566 6714616 6712033 0.000000e+00 3051
7 TraesCS5A01G016500 chr1D 83.876 2611 349 36 1000 3566 6913162 6915744 0.000000e+00 2423
8 TraesCS5A01G016500 chr1D 82.981 2603 344 52 984 3535 6898440 6900994 0.000000e+00 2261
9 TraesCS5A01G016500 chr1B 89.637 2644 239 18 908 3540 548193776 548191157 0.000000e+00 3332
10 TraesCS5A01G016500 chr1B 85.786 2575 299 43 1013 3566 8855868 8853340 0.000000e+00 2665
11 TraesCS5A01G016500 chr1B 83.558 2676 364 47 932 3564 10007551 10004909 0.000000e+00 2435
12 TraesCS5A01G016500 chr1B 83.789 2597 334 44 984 3535 548199906 548197352 0.000000e+00 2383
13 TraesCS5A01G016500 chr1B 82.135 2211 297 49 993 3170 9175374 9177519 0.000000e+00 1805
14 TraesCS5A01G016500 chr1B 81.529 157 17 7 201 352 548194018 548193869 6.250000e-23 119
15 TraesCS5A01G016500 chr1A 88.224 2675 291 11 903 3566 7834590 7837251 0.000000e+00 3173
16 TraesCS5A01G016500 chr1A 87.779 2602 272 27 993 3566 8144508 8141925 0.000000e+00 3001
17 TraesCS5A01G016500 chr1A 84.510 2550 321 33 981 3496 8327128 8329637 0.000000e+00 2453
18 TraesCS5A01G016500 chr1A 83.845 2575 341 44 1000 3527 8331950 8334496 0.000000e+00 2381
19 TraesCS5A01G016500 chr1A 83.391 2583 357 40 1000 3535 8342046 8344603 0.000000e+00 2327
20 TraesCS5A01G016500 chr1A 81.476 2602 375 62 987 3535 8159867 8157320 0.000000e+00 2036
21 TraesCS5A01G016500 chr1A 81.347 1485 228 29 1262 2721 8364368 8365828 0.000000e+00 1162
22 TraesCS5A01G016500 chr1A 84.319 389 45 11 862 1245 8340075 8340452 2.020000e-97 366
23 TraesCS5A01G016500 chr1A 77.019 322 38 14 987 1302 8088777 8088486 6.170000e-33 152
24 TraesCS5A01G016500 chr1A 84.722 144 20 2 1503 1645 7829337 7829479 3.710000e-30 143
25 TraesCS5A01G016500 chr1A 92.045 88 7 0 777 864 327422004 327421917 1.340000e-24 124
26 TraesCS5A01G016500 chr1A 92.045 88 7 0 777 864 526272697 526272610 1.340000e-24 124
27 TraesCS5A01G016500 chr1A 90.123 81 8 0 272 352 7834444 7834524 4.870000e-19 106
28 TraesCS5A01G016500 chr4B 87.132 2580 271 29 987 3535 36635860 36633311 0.000000e+00 2868
29 TraesCS5A01G016500 chr4B 95.882 170 7 0 351 520 582327842 582328011 3.510000e-70 276
30 TraesCS5A01G016500 chr4B 95.882 170 7 0 351 520 633545065 633545234 3.510000e-70 276
31 TraesCS5A01G016500 chr4B 95.882 170 7 0 351 520 656085270 656085101 3.510000e-70 276
32 TraesCS5A01G016500 chr2D 85.266 2613 294 53 1000 3566 469984039 469986606 0.000000e+00 2608
33 TraesCS5A01G016500 chr2D 84.056 2628 318 53 988 3566 599926416 599928991 0.000000e+00 2438
34 TraesCS5A01G016500 chr2D 83.583 2607 345 49 984 3535 469990572 469993150 0.000000e+00 2366
35 TraesCS5A01G016500 chr2D 94.030 268 11 4 514 778 204112948 204112683 5.550000e-108 401
36 TraesCS5A01G016500 chr2D 94.297 263 12 2 517 777 10825693 10825432 1.990000e-107 399
37 TraesCS5A01G016500 chr5D 94.478 1503 74 1 846 2348 18083523 18085016 0.000000e+00 2307
38 TraesCS5A01G016500 chr5D 81.635 2679 407 51 944 3566 447105681 447108330 0.000000e+00 2143
39 TraesCS5A01G016500 chr5D 96.307 352 13 0 1 352 18083174 18083525 2.390000e-161 579
40 TraesCS5A01G016500 chr5D 92.045 88 7 0 777 864 166403513 166403600 1.340000e-24 124
41 TraesCS5A01G016500 chr6D 84.842 475 61 7 380 849 426200578 426201046 5.390000e-128 468
42 TraesCS5A01G016500 chr6D 94.361 266 11 3 515 777 388990617 388990881 4.290000e-109 405
43 TraesCS5A01G016500 chr3D 94.382 267 10 4 514 777 586578931 586579195 4.290000e-109 405
44 TraesCS5A01G016500 chr4D 92.606 284 13 6 511 790 349816050 349816329 5.550000e-108 401
45 TraesCS5A01G016500 chrUn 92.754 276 14 5 506 777 108799224 108799497 9.280000e-106 394
46 TraesCS5A01G016500 chr7A 95.480 177 8 0 346 522 25310438 25310262 2.100000e-72 283
47 TraesCS5A01G016500 chr7A 93.855 179 11 0 342 520 57866349 57866527 1.630000e-68 270
48 TraesCS5A01G016500 chr7A 93.443 183 11 1 350 532 664836784 664836603 1.630000e-68 270
49 TraesCS5A01G016500 chr4A 95.882 170 7 0 351 520 595568893 595568724 3.510000e-70 276
50 TraesCS5A01G016500 chr6B 94.857 175 9 0 346 520 497232350 497232176 1.260000e-69 274
51 TraesCS5A01G016500 chr6B 94.186 86 5 0 776 861 36459072 36459157 8.030000e-27 132
52 TraesCS5A01G016500 chr3B 95.455 88 3 1 763 850 191681852 191681938 4.800000e-29 139
53 TraesCS5A01G016500 chr3A 92.222 90 7 0 777 866 629278872 629278783 1.040000e-25 128
54 TraesCS5A01G016500 chr3A 92.135 89 7 0 776 864 410321277 410321189 3.740000e-25 126
55 TraesCS5A01G016500 chr6A 92.045 88 7 0 777 864 429291059 429290972 1.340000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G016500 chr5A 12191649 12195214 3565 True 6586.000000 6586 100.0000 1 3566 1 chr5A.!!$R1 3565
1 TraesCS5A01G016500 chr5B 13773565 13776650 3085 True 2476.000000 4482 93.4315 1 3566 2 chr5B.!!$R2 3565
2 TraesCS5A01G016500 chr1D 407669973 407672636 2663 True 3393.000000 3393 89.7200 907 3566 1 chr1D.!!$R2 2659
3 TraesCS5A01G016500 chr1D 6712033 6714616 2583 True 3051.000000 3051 88.1250 993 3566 1 chr1D.!!$R1 2573
4 TraesCS5A01G016500 chr1D 6913162 6915744 2582 False 2423.000000 2423 83.8760 1000 3566 1 chr1D.!!$F2 2566
5 TraesCS5A01G016500 chr1D 6898440 6900994 2554 False 2261.000000 2261 82.9810 984 3535 1 chr1D.!!$F1 2551
6 TraesCS5A01G016500 chr1B 8853340 8855868 2528 True 2665.000000 2665 85.7860 1013 3566 1 chr1B.!!$R1 2553
7 TraesCS5A01G016500 chr1B 10004909 10007551 2642 True 2435.000000 2435 83.5580 932 3564 1 chr1B.!!$R2 2632
8 TraesCS5A01G016500 chr1B 548191157 548199906 8749 True 1944.666667 3332 84.9850 201 3540 3 chr1B.!!$R3 3339
9 TraesCS5A01G016500 chr1B 9175374 9177519 2145 False 1805.000000 1805 82.1350 993 3170 1 chr1B.!!$F1 2177
10 TraesCS5A01G016500 chr1A 8141925 8144508 2583 True 3001.000000 3001 87.7790 993 3566 1 chr1A.!!$R2 2573
11 TraesCS5A01G016500 chr1A 8327128 8334496 7368 False 2417.000000 2453 84.1775 981 3527 2 chr1A.!!$F4 2546
12 TraesCS5A01G016500 chr1A 8157320 8159867 2547 True 2036.000000 2036 81.4760 987 3535 1 chr1A.!!$R3 2548
13 TraesCS5A01G016500 chr1A 7834444 7837251 2807 False 1639.500000 3173 89.1735 272 3566 2 chr1A.!!$F3 3294
14 TraesCS5A01G016500 chr1A 8340075 8344603 4528 False 1346.500000 2327 83.8550 862 3535 2 chr1A.!!$F5 2673
15 TraesCS5A01G016500 chr1A 8364368 8365828 1460 False 1162.000000 1162 81.3470 1262 2721 1 chr1A.!!$F2 1459
16 TraesCS5A01G016500 chr4B 36633311 36635860 2549 True 2868.000000 2868 87.1320 987 3535 1 chr4B.!!$R1 2548
17 TraesCS5A01G016500 chr2D 469984039 469993150 9111 False 2487.000000 2608 84.4245 984 3566 2 chr2D.!!$F2 2582
18 TraesCS5A01G016500 chr2D 599926416 599928991 2575 False 2438.000000 2438 84.0560 988 3566 1 chr2D.!!$F1 2578
19 TraesCS5A01G016500 chr5D 447105681 447108330 2649 False 2143.000000 2143 81.6350 944 3566 1 chr5D.!!$F2 2622
20 TraesCS5A01G016500 chr5D 18083174 18085016 1842 False 1443.000000 2307 95.3925 1 2348 2 chr5D.!!$F3 2347

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 6518 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.0 0.0 0.0 42.26 5.80 F
825 6519 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.0 0.0 0.0 40.31 5.19 F
1923 9608 1.172812 GGTCACAAGCCAACCAGTCC 61.173 60.0 0.0 0.0 33.11 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 9717 1.137872 GCTCTCCATACAGTCACAGGG 59.862 57.143 0.0 0.0 0.00 4.45 R
2228 9934 2.606725 CCGAGACATGCTTCTTCACATC 59.393 50.000 0.0 0.0 0.00 3.06 R
3231 22329 2.174319 GGTTACCGCTGCTGCTAGC 61.174 63.158 8.1 8.1 42.82 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 1.537202 GCCGACTTCAGCTCAACATTT 59.463 47.619 0.00 0.00 0.00 2.32
106 107 7.648908 CAGCTCAACATTTTTGTATTTCTGTGA 59.351 33.333 0.00 0.00 0.00 3.58
141 157 2.661718 GGAGGGACCTTTTGTTGTTGA 58.338 47.619 0.00 0.00 35.41 3.18
156 172 7.655236 TTGTTGTTGATATGCCTTGAATTTG 57.345 32.000 0.00 0.00 0.00 2.32
171 187 7.573469 GCCTTGAATTTGCATTTTTAATGCTCA 60.573 33.333 21.01 14.68 44.79 4.26
179 195 4.492895 GCATTTTTAATGCTCAACCATGCG 60.493 41.667 15.20 0.00 41.52 4.73
198 214 5.573296 TGCGTTGAAGCAAATATTTTGTG 57.427 34.783 0.00 0.00 45.06 3.33
352 6046 3.066760 GTCCTGCCTTGCAATTATGGTAC 59.933 47.826 0.00 0.00 38.41 3.34
353 6047 3.053693 TCCTGCCTTGCAATTATGGTACT 60.054 43.478 0.00 0.00 38.41 2.73
354 6048 3.316308 CCTGCCTTGCAATTATGGTACTC 59.684 47.826 0.00 0.00 38.41 2.59
355 6049 3.287222 TGCCTTGCAATTATGGTACTCC 58.713 45.455 0.00 0.00 34.76 3.85
356 6050 2.623416 GCCTTGCAATTATGGTACTCCC 59.377 50.000 0.00 0.00 0.00 4.30
357 6051 3.688414 GCCTTGCAATTATGGTACTCCCT 60.688 47.826 0.00 0.00 0.00 4.20
358 6052 4.137543 CCTTGCAATTATGGTACTCCCTC 58.862 47.826 0.00 0.00 0.00 4.30
359 6053 3.857157 TGCAATTATGGTACTCCCTCC 57.143 47.619 0.00 0.00 0.00 4.30
360 6054 3.393687 TGCAATTATGGTACTCCCTCCT 58.606 45.455 0.00 0.00 0.00 3.69
361 6055 3.785887 TGCAATTATGGTACTCCCTCCTT 59.214 43.478 0.00 0.00 0.00 3.36
362 6056 4.141482 TGCAATTATGGTACTCCCTCCTTC 60.141 45.833 0.00 0.00 0.00 3.46
363 6057 4.747009 GCAATTATGGTACTCCCTCCTTCC 60.747 50.000 0.00 0.00 0.00 3.46
364 6058 3.788116 TTATGGTACTCCCTCCTTCCA 57.212 47.619 0.00 0.00 0.00 3.53
365 6059 2.897823 ATGGTACTCCCTCCTTCCAT 57.102 50.000 0.00 0.00 0.00 3.41
366 6060 2.176247 TGGTACTCCCTCCTTCCATC 57.824 55.000 0.00 0.00 0.00 3.51
367 6061 1.651770 TGGTACTCCCTCCTTCCATCT 59.348 52.381 0.00 0.00 0.00 2.90
368 6062 2.863238 TGGTACTCCCTCCTTCCATCTA 59.137 50.000 0.00 0.00 0.00 1.98
369 6063 3.471306 TGGTACTCCCTCCTTCCATCTAT 59.529 47.826 0.00 0.00 0.00 1.98
370 6064 4.673132 TGGTACTCCCTCCTTCCATCTATA 59.327 45.833 0.00 0.00 0.00 1.31
371 6065 5.318889 TGGTACTCCCTCCTTCCATCTATAT 59.681 44.000 0.00 0.00 0.00 0.86
372 6066 6.511445 TGGTACTCCCTCCTTCCATCTATATA 59.489 42.308 0.00 0.00 0.00 0.86
373 6067 7.064229 GGTACTCCCTCCTTCCATCTATATAG 58.936 46.154 3.10 3.10 0.00 1.31
374 6068 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
375 6069 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
376 6070 4.870361 TCCCTCCTTCCATCTATATAGGGT 59.130 45.833 9.89 0.00 42.58 4.34
377 6071 5.321625 TCCCTCCTTCCATCTATATAGGGTT 59.678 44.000 9.89 0.00 42.58 4.11
378 6072 6.032693 CCCTCCTTCCATCTATATAGGGTTT 58.967 44.000 9.89 0.00 38.09 3.27
379 6073 7.021295 TCCCTCCTTCCATCTATATAGGGTTTA 59.979 40.741 9.89 0.00 42.58 2.01
380 6074 7.682890 CCCTCCTTCCATCTATATAGGGTTTAA 59.317 40.741 9.89 0.00 38.09 1.52
381 6075 9.285359 CCTCCTTCCATCTATATAGGGTTTAAT 57.715 37.037 9.89 0.00 0.00 1.40
383 6077 9.629649 TCCTTCCATCTATATAGGGTTTAATGT 57.370 33.333 9.89 0.00 0.00 2.71
384 6078 9.672673 CCTTCCATCTATATAGGGTTTAATGTG 57.327 37.037 9.89 1.15 0.00 3.21
411 6105 8.441312 TTTTTAAGACCGTCTTTGACTATTGT 57.559 30.769 18.73 0.00 37.89 2.71
412 6106 7.647907 TTTAAGACCGTCTTTGACTATTGTC 57.352 36.000 18.73 0.00 39.37 3.18
475 6169 5.833406 TCATTGAAAGCTTCTTTCACACA 57.167 34.783 18.30 7.74 38.05 3.72
476 6170 5.581605 TCATTGAAAGCTTCTTTCACACAC 58.418 37.500 18.30 0.00 38.05 3.82
477 6171 3.673746 TGAAAGCTTCTTTCACACACG 57.326 42.857 15.58 0.00 33.90 4.49
478 6172 3.266636 TGAAAGCTTCTTTCACACACGA 58.733 40.909 15.58 0.00 33.90 4.35
479 6173 3.687212 TGAAAGCTTCTTTCACACACGAA 59.313 39.130 15.58 0.00 33.90 3.85
480 6174 4.335315 TGAAAGCTTCTTTCACACACGAAT 59.665 37.500 15.58 0.00 33.90 3.34
481 6175 4.900635 AAGCTTCTTTCACACACGAATT 57.099 36.364 0.00 0.00 0.00 2.17
482 6176 4.900635 AGCTTCTTTCACACACGAATTT 57.099 36.364 0.00 0.00 0.00 1.82
483 6177 6.371809 AAGCTTCTTTCACACACGAATTTA 57.628 33.333 0.00 0.00 0.00 1.40
484 6178 6.371809 AGCTTCTTTCACACACGAATTTAA 57.628 33.333 0.00 0.00 0.00 1.52
485 6179 6.199393 AGCTTCTTTCACACACGAATTTAAC 58.801 36.000 0.00 0.00 0.00 2.01
486 6180 5.968848 GCTTCTTTCACACACGAATTTAACA 59.031 36.000 0.00 0.00 0.00 2.41
487 6181 6.140737 GCTTCTTTCACACACGAATTTAACAG 59.859 38.462 0.00 0.00 0.00 3.16
488 6182 6.671614 TCTTTCACACACGAATTTAACAGT 57.328 33.333 0.00 0.00 0.00 3.55
489 6183 6.482835 TCTTTCACACACGAATTTAACAGTG 58.517 36.000 0.00 0.00 40.17 3.66
494 6188 4.893424 ACACGAATTTAACAGTGTGCTT 57.107 36.364 0.00 0.00 44.90 3.91
495 6189 5.243426 ACACGAATTTAACAGTGTGCTTT 57.757 34.783 0.00 0.00 44.90 3.51
496 6190 5.034152 ACACGAATTTAACAGTGTGCTTTG 58.966 37.500 0.00 0.00 44.90 2.77
497 6191 5.034152 CACGAATTTAACAGTGTGCTTTGT 58.966 37.500 0.00 0.00 0.00 2.83
498 6192 5.034152 ACGAATTTAACAGTGTGCTTTGTG 58.966 37.500 0.00 0.00 0.00 3.33
499 6193 5.034152 CGAATTTAACAGTGTGCTTTGTGT 58.966 37.500 0.00 0.00 0.00 3.72
500 6194 6.183360 ACGAATTTAACAGTGTGCTTTGTGTA 60.183 34.615 0.00 0.00 0.00 2.90
501 6195 6.689241 CGAATTTAACAGTGTGCTTTGTGTAA 59.311 34.615 0.00 0.00 0.00 2.41
502 6196 7.097047 CGAATTTAACAGTGTGCTTTGTGTAAG 60.097 37.037 0.00 0.00 36.90 2.34
503 6197 6.503589 TTTAACAGTGTGCTTTGTGTAAGT 57.496 33.333 0.00 0.00 36.19 2.24
504 6198 6.503589 TTAACAGTGTGCTTTGTGTAAGTT 57.496 33.333 0.00 0.00 36.19 2.66
505 6199 4.355543 ACAGTGTGCTTTGTGTAAGTTG 57.644 40.909 0.00 0.00 36.19 3.16
506 6200 3.108144 CAGTGTGCTTTGTGTAAGTTGC 58.892 45.455 0.00 0.00 36.19 4.17
507 6201 2.752354 AGTGTGCTTTGTGTAAGTTGCA 59.248 40.909 0.00 0.00 36.19 4.08
508 6202 3.381272 AGTGTGCTTTGTGTAAGTTGCAT 59.619 39.130 0.00 0.00 36.19 3.96
509 6203 3.486841 GTGTGCTTTGTGTAAGTTGCATG 59.513 43.478 0.00 0.00 36.19 4.06
510 6204 3.130164 TGTGCTTTGTGTAAGTTGCATGT 59.870 39.130 0.00 0.00 36.19 3.21
511 6205 3.730715 GTGCTTTGTGTAAGTTGCATGTC 59.269 43.478 0.00 0.00 36.19 3.06
512 6206 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
513 6207 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
514 6208 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
515 6209 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
516 6210 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
517 6211 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
521 6215 9.830975 TGTGTAAGTTGCATGTCATATATTACT 57.169 29.630 0.00 0.00 0.00 2.24
523 6217 9.489084 TGTAAGTTGCATGTCATATATTACTCC 57.511 33.333 0.00 0.00 0.00 3.85
524 6218 7.986085 AAGTTGCATGTCATATATTACTCCC 57.014 36.000 0.00 0.00 0.00 4.30
525 6219 7.321717 AGTTGCATGTCATATATTACTCCCT 57.678 36.000 0.00 0.00 0.00 4.20
526 6220 7.749666 AGTTGCATGTCATATATTACTCCCTT 58.250 34.615 0.00 0.00 0.00 3.95
527 6221 8.220559 AGTTGCATGTCATATATTACTCCCTTT 58.779 33.333 0.00 0.00 0.00 3.11
528 6222 7.984422 TGCATGTCATATATTACTCCCTTTG 57.016 36.000 0.00 0.00 0.00 2.77
529 6223 7.517320 TGCATGTCATATATTACTCCCTTTGT 58.483 34.615 0.00 0.00 0.00 2.83
530 6224 7.998383 TGCATGTCATATATTACTCCCTTTGTT 59.002 33.333 0.00 0.00 0.00 2.83
531 6225 8.850156 GCATGTCATATATTACTCCCTTTGTTT 58.150 33.333 0.00 0.00 0.00 2.83
542 6236 6.710597 ACTCCCTTTGTTTCTTTTTAGTCC 57.289 37.500 0.00 0.00 0.00 3.85
543 6237 5.298527 ACTCCCTTTGTTTCTTTTTAGTCCG 59.701 40.000 0.00 0.00 0.00 4.79
544 6238 4.037089 TCCCTTTGTTTCTTTTTAGTCCGC 59.963 41.667 0.00 0.00 0.00 5.54
545 6239 4.202070 CCCTTTGTTTCTTTTTAGTCCGCA 60.202 41.667 0.00 0.00 0.00 5.69
546 6240 5.508994 CCCTTTGTTTCTTTTTAGTCCGCAT 60.509 40.000 0.00 0.00 0.00 4.73
547 6241 6.294286 CCCTTTGTTTCTTTTTAGTCCGCATA 60.294 38.462 0.00 0.00 0.00 3.14
548 6242 7.312899 CCTTTGTTTCTTTTTAGTCCGCATAT 58.687 34.615 0.00 0.00 0.00 1.78
549 6243 8.455682 CCTTTGTTTCTTTTTAGTCCGCATATA 58.544 33.333 0.00 0.00 0.00 0.86
550 6244 9.834628 CTTTGTTTCTTTTTAGTCCGCATATAA 57.165 29.630 0.00 0.00 0.00 0.98
551 6245 9.834628 TTTGTTTCTTTTTAGTCCGCATATAAG 57.165 29.630 0.00 0.00 0.00 1.73
552 6246 7.981142 TGTTTCTTTTTAGTCCGCATATAAGG 58.019 34.615 0.00 0.00 0.00 2.69
553 6247 7.608761 TGTTTCTTTTTAGTCCGCATATAAGGT 59.391 33.333 0.00 0.00 0.00 3.50
554 6248 8.456471 GTTTCTTTTTAGTCCGCATATAAGGTT 58.544 33.333 0.00 0.00 0.00 3.50
555 6249 8.570068 TTCTTTTTAGTCCGCATATAAGGTTT 57.430 30.769 0.00 0.00 0.00 3.27
556 6250 7.981142 TCTTTTTAGTCCGCATATAAGGTTTG 58.019 34.615 0.00 0.00 0.00 2.93
557 6251 6.687081 TTTTAGTCCGCATATAAGGTTTGG 57.313 37.500 0.00 0.00 0.00 3.28
558 6252 3.926058 AGTCCGCATATAAGGTTTGGT 57.074 42.857 0.00 0.00 0.00 3.67
559 6253 3.805207 AGTCCGCATATAAGGTTTGGTC 58.195 45.455 0.00 0.00 0.00 4.02
560 6254 3.199071 AGTCCGCATATAAGGTTTGGTCA 59.801 43.478 0.00 0.00 0.00 4.02
561 6255 3.942748 GTCCGCATATAAGGTTTGGTCAA 59.057 43.478 0.00 0.00 0.00 3.18
562 6256 4.396790 GTCCGCATATAAGGTTTGGTCAAA 59.603 41.667 0.00 0.00 0.00 2.69
563 6257 4.638421 TCCGCATATAAGGTTTGGTCAAAG 59.362 41.667 0.00 0.00 0.00 2.77
564 6258 4.398044 CCGCATATAAGGTTTGGTCAAAGT 59.602 41.667 0.00 0.00 0.00 2.66
565 6259 5.448632 CCGCATATAAGGTTTGGTCAAAGTC 60.449 44.000 0.00 0.00 0.00 3.01
566 6260 5.123186 CGCATATAAGGTTTGGTCAAAGTCA 59.877 40.000 0.00 0.00 0.00 3.41
567 6261 6.348950 CGCATATAAGGTTTGGTCAAAGTCAA 60.349 38.462 0.00 0.00 0.00 3.18
568 6262 7.029563 GCATATAAGGTTTGGTCAAAGTCAAG 58.970 38.462 0.00 0.00 0.00 3.02
569 6263 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
570 6264 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
571 6265 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
588 6282 9.516314 AGTCAAGCTTTGTAAAATTTGACTAAC 57.484 29.630 21.77 2.05 42.92 2.34
589 6283 9.516314 GTCAAGCTTTGTAAAATTTGACTAACT 57.484 29.630 17.44 3.97 37.80 2.24
647 6341 9.304335 TGAAATCAATATTATCAGATGCCATGT 57.696 29.630 0.00 0.00 0.00 3.21
650 6344 7.854557 TCAATATTATCAGATGCCATGTAGC 57.145 36.000 0.00 0.00 0.00 3.58
651 6345 6.536224 TCAATATTATCAGATGCCATGTAGCG 59.464 38.462 0.00 0.00 34.65 4.26
652 6346 3.751479 TTATCAGATGCCATGTAGCGT 57.249 42.857 0.00 0.00 34.65 5.07
653 6347 4.864704 TTATCAGATGCCATGTAGCGTA 57.135 40.909 0.00 0.00 34.65 4.42
654 6348 3.969287 ATCAGATGCCATGTAGCGTAT 57.031 42.857 0.00 0.00 34.65 3.06
655 6349 3.751479 TCAGATGCCATGTAGCGTATT 57.249 42.857 0.00 0.00 34.65 1.89
656 6350 4.071961 TCAGATGCCATGTAGCGTATTT 57.928 40.909 0.00 0.00 34.65 1.40
657 6351 4.450976 TCAGATGCCATGTAGCGTATTTT 58.549 39.130 0.00 0.00 34.65 1.82
658 6352 4.511454 TCAGATGCCATGTAGCGTATTTTC 59.489 41.667 0.00 0.00 34.65 2.29
659 6353 4.273235 CAGATGCCATGTAGCGTATTTTCA 59.727 41.667 0.00 0.00 34.65 2.69
660 6354 5.049198 CAGATGCCATGTAGCGTATTTTCAT 60.049 40.000 0.00 0.00 34.65 2.57
661 6355 6.147656 CAGATGCCATGTAGCGTATTTTCATA 59.852 38.462 0.00 0.00 34.65 2.15
662 6356 5.666969 TGCCATGTAGCGTATTTTCATAC 57.333 39.130 0.00 0.00 34.65 2.39
663 6357 5.364778 TGCCATGTAGCGTATTTTCATACT 58.635 37.500 0.00 0.00 34.10 2.12
664 6358 6.517605 TGCCATGTAGCGTATTTTCATACTA 58.482 36.000 0.00 0.00 34.10 1.82
665 6359 7.158697 TGCCATGTAGCGTATTTTCATACTAT 58.841 34.615 0.00 0.00 34.10 2.12
666 6360 8.308207 TGCCATGTAGCGTATTTTCATACTATA 58.692 33.333 0.00 0.00 34.10 1.31
667 6361 9.314321 GCCATGTAGCGTATTTTCATACTATAT 57.686 33.333 0.00 0.00 34.10 0.86
738 6432 6.190954 ACTTTGTGTAGTTTGACTTTGACC 57.809 37.500 0.00 0.00 0.00 4.02
739 6433 5.708230 ACTTTGTGTAGTTTGACTTTGACCA 59.292 36.000 0.00 0.00 0.00 4.02
740 6434 6.207810 ACTTTGTGTAGTTTGACTTTGACCAA 59.792 34.615 0.00 0.00 0.00 3.67
741 6435 6.576662 TTGTGTAGTTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
742 6436 6.767524 TGTGTAGTTTGACTTTGACCAAAT 57.232 33.333 0.00 0.00 35.14 2.32
743 6437 6.791303 TGTGTAGTTTGACTTTGACCAAATC 58.209 36.000 0.00 0.00 35.14 2.17
744 6438 6.601613 TGTGTAGTTTGACTTTGACCAAATCT 59.398 34.615 0.00 0.00 35.14 2.40
745 6439 7.122055 TGTGTAGTTTGACTTTGACCAAATCTT 59.878 33.333 0.00 0.00 35.14 2.40
746 6440 8.617809 GTGTAGTTTGACTTTGACCAAATCTTA 58.382 33.333 0.00 0.00 35.14 2.10
747 6441 9.349713 TGTAGTTTGACTTTGACCAAATCTTAT 57.650 29.630 0.00 0.00 35.14 1.73
751 6445 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
752 6446 7.015226 TGACTTTGACCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
753 6447 6.038161 TGACTTTGACCAAATCTTATATGCGG 59.962 38.462 0.00 0.00 0.00 5.69
754 6448 6.119536 ACTTTGACCAAATCTTATATGCGGA 58.880 36.000 0.00 0.00 0.00 5.54
755 6449 6.260936 ACTTTGACCAAATCTTATATGCGGAG 59.739 38.462 0.00 0.00 0.00 4.63
756 6450 5.290493 TGACCAAATCTTATATGCGGAGT 57.710 39.130 0.00 0.00 0.00 3.85
757 6451 5.056480 TGACCAAATCTTATATGCGGAGTG 58.944 41.667 0.00 0.00 0.00 3.51
758 6452 5.163353 TGACCAAATCTTATATGCGGAGTGA 60.163 40.000 0.00 0.00 0.00 3.41
759 6453 5.680619 ACCAAATCTTATATGCGGAGTGAA 58.319 37.500 0.00 0.00 0.00 3.18
760 6454 6.119536 ACCAAATCTTATATGCGGAGTGAAA 58.880 36.000 0.00 0.00 0.00 2.69
761 6455 6.601613 ACCAAATCTTATATGCGGAGTGAAAA 59.398 34.615 0.00 0.00 0.00 2.29
762 6456 7.134815 CCAAATCTTATATGCGGAGTGAAAAG 58.865 38.462 0.00 0.00 0.00 2.27
763 6457 7.012327 CCAAATCTTATATGCGGAGTGAAAAGA 59.988 37.037 0.00 0.00 0.00 2.52
764 6458 8.397906 CAAATCTTATATGCGGAGTGAAAAGAA 58.602 33.333 0.00 0.00 0.00 2.52
765 6459 8.506168 AATCTTATATGCGGAGTGAAAAGAAA 57.494 30.769 0.00 0.00 0.00 2.52
766 6460 7.303634 TCTTATATGCGGAGTGAAAAGAAAC 57.696 36.000 0.00 0.00 0.00 2.78
767 6461 2.969443 ATGCGGAGTGAAAAGAAACG 57.031 45.000 0.00 0.00 0.00 3.60
768 6462 0.941542 TGCGGAGTGAAAAGAAACGG 59.058 50.000 0.00 0.00 0.00 4.44
769 6463 1.223187 GCGGAGTGAAAAGAAACGGA 58.777 50.000 0.00 0.00 0.00 4.69
770 6464 1.194772 GCGGAGTGAAAAGAAACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
771 6465 1.798813 CGGAGTGAAAAGAAACGGAGG 59.201 52.381 0.00 0.00 0.00 4.30
772 6466 2.152016 GGAGTGAAAAGAAACGGAGGG 58.848 52.381 0.00 0.00 0.00 4.30
773 6467 2.224450 GGAGTGAAAAGAAACGGAGGGA 60.224 50.000 0.00 0.00 0.00 4.20
774 6468 3.067833 GAGTGAAAAGAAACGGAGGGAG 58.932 50.000 0.00 0.00 0.00 4.30
775 6469 2.438392 AGTGAAAAGAAACGGAGGGAGT 59.562 45.455 0.00 0.00 0.00 3.85
776 6470 3.644738 AGTGAAAAGAAACGGAGGGAGTA 59.355 43.478 0.00 0.00 0.00 2.59
777 6471 4.286291 AGTGAAAAGAAACGGAGGGAGTAT 59.714 41.667 0.00 0.00 0.00 2.12
778 6472 5.001874 GTGAAAAGAAACGGAGGGAGTATT 58.998 41.667 0.00 0.00 0.00 1.89
779 6473 5.001232 TGAAAAGAAACGGAGGGAGTATTG 58.999 41.667 0.00 0.00 0.00 1.90
780 6474 2.693267 AGAAACGGAGGGAGTATTGC 57.307 50.000 0.00 0.00 0.00 3.56
781 6475 2.188817 AGAAACGGAGGGAGTATTGCT 58.811 47.619 0.00 0.00 0.00 3.91
782 6476 2.572104 AGAAACGGAGGGAGTATTGCTT 59.428 45.455 0.00 0.00 0.00 3.91
783 6477 3.009143 AGAAACGGAGGGAGTATTGCTTT 59.991 43.478 0.00 0.00 0.00 3.51
784 6478 4.224370 AGAAACGGAGGGAGTATTGCTTTA 59.776 41.667 0.00 0.00 0.00 1.85
785 6479 3.821421 ACGGAGGGAGTATTGCTTTAG 57.179 47.619 0.00 0.00 0.00 1.85
786 6480 3.105283 ACGGAGGGAGTATTGCTTTAGT 58.895 45.455 0.00 0.00 0.00 2.24
787 6481 4.284178 ACGGAGGGAGTATTGCTTTAGTA 58.716 43.478 0.00 0.00 0.00 1.82
788 6482 4.900054 ACGGAGGGAGTATTGCTTTAGTAT 59.100 41.667 0.00 0.00 0.00 2.12
789 6483 5.365895 ACGGAGGGAGTATTGCTTTAGTATT 59.634 40.000 0.00 0.00 0.00 1.89
790 6484 6.126854 ACGGAGGGAGTATTGCTTTAGTATTT 60.127 38.462 0.00 0.00 0.00 1.40
791 6485 6.202954 CGGAGGGAGTATTGCTTTAGTATTTG 59.797 42.308 0.00 0.00 0.00 2.32
792 6486 6.486993 GGAGGGAGTATTGCTTTAGTATTTGG 59.513 42.308 0.00 0.00 0.00 3.28
793 6487 6.970191 AGGGAGTATTGCTTTAGTATTTGGT 58.030 36.000 0.00 0.00 0.00 3.67
794 6488 7.054751 AGGGAGTATTGCTTTAGTATTTGGTC 58.945 38.462 0.00 0.00 0.00 4.02
795 6489 6.826741 GGGAGTATTGCTTTAGTATTTGGTCA 59.173 38.462 0.00 0.00 0.00 4.02
796 6490 7.338449 GGGAGTATTGCTTTAGTATTTGGTCAA 59.662 37.037 0.00 0.00 0.00 3.18
797 6491 8.736244 GGAGTATTGCTTTAGTATTTGGTCAAA 58.264 33.333 0.00 0.00 34.46 2.69
798 6492 9.774742 GAGTATTGCTTTAGTATTTGGTCAAAG 57.225 33.333 2.55 0.00 33.32 2.77
799 6493 9.297037 AGTATTGCTTTAGTATTTGGTCAAAGT 57.703 29.630 2.55 0.00 33.32 2.66
800 6494 9.908152 GTATTGCTTTAGTATTTGGTCAAAGTT 57.092 29.630 2.55 0.00 33.32 2.66
803 6497 7.590279 TGCTTTAGTATTTGGTCAAAGTTAGC 58.410 34.615 2.55 0.00 33.32 3.09
804 6498 7.027760 GCTTTAGTATTTGGTCAAAGTTAGCC 58.972 38.462 2.55 0.00 33.32 3.93
805 6499 7.094334 GCTTTAGTATTTGGTCAAAGTTAGCCT 60.094 37.037 2.55 0.00 33.32 4.58
806 6500 7.916914 TTAGTATTTGGTCAAAGTTAGCCTC 57.083 36.000 2.55 0.00 33.32 4.70
807 6501 4.935808 AGTATTTGGTCAAAGTTAGCCTCG 59.064 41.667 2.55 0.00 33.32 4.63
808 6502 3.478857 TTTGGTCAAAGTTAGCCTCGA 57.521 42.857 0.00 0.00 0.00 4.04
809 6503 3.478857 TTGGTCAAAGTTAGCCTCGAA 57.521 42.857 0.00 0.00 0.00 3.71
810 6504 3.478857 TGGTCAAAGTTAGCCTCGAAA 57.521 42.857 0.00 0.00 0.00 3.46
811 6505 3.811083 TGGTCAAAGTTAGCCTCGAAAA 58.189 40.909 0.00 0.00 0.00 2.29
812 6506 4.200874 TGGTCAAAGTTAGCCTCGAAAAA 58.799 39.130 0.00 0.00 0.00 1.94
813 6507 4.035909 TGGTCAAAGTTAGCCTCGAAAAAC 59.964 41.667 0.00 0.00 0.00 2.43
814 6508 4.209112 GTCAAAGTTAGCCTCGAAAAACG 58.791 43.478 0.00 0.00 44.09 3.60
815 6509 2.963498 AAGTTAGCCTCGAAAAACGC 57.037 45.000 0.00 0.00 42.26 4.84
816 6510 1.873698 AGTTAGCCTCGAAAAACGCA 58.126 45.000 0.00 0.00 42.26 5.24
817 6511 2.423577 AGTTAGCCTCGAAAAACGCAT 58.576 42.857 0.00 0.00 42.26 4.73
818 6512 2.812011 AGTTAGCCTCGAAAAACGCATT 59.188 40.909 0.00 0.00 42.26 3.56
819 6513 3.998341 AGTTAGCCTCGAAAAACGCATTA 59.002 39.130 0.00 0.00 42.26 1.90
820 6514 4.092968 AGTTAGCCTCGAAAAACGCATTAG 59.907 41.667 0.00 0.00 42.26 1.73
821 6515 1.737793 AGCCTCGAAAAACGCATTAGG 59.262 47.619 0.00 0.00 42.26 2.69
822 6516 1.794076 GCCTCGAAAAACGCATTAGGC 60.794 52.381 0.00 0.00 45.73 3.93
823 6517 1.202143 CCTCGAAAAACGCATTAGGCC 60.202 52.381 0.00 0.00 42.26 5.19
824 6518 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.000 0.00 0.00 42.26 5.80
825 6519 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.000 0.00 0.00 40.31 5.19
826 6520 2.011222 CGAAAAACGCATTAGGCCCTA 58.989 47.619 0.00 0.00 40.31 3.53
827 6521 2.616842 CGAAAAACGCATTAGGCCCTAT 59.383 45.455 0.00 0.00 40.31 2.57
828 6522 3.810941 CGAAAAACGCATTAGGCCCTATA 59.189 43.478 0.00 0.00 40.31 1.31
829 6523 4.454504 CGAAAAACGCATTAGGCCCTATAT 59.545 41.667 0.00 0.00 40.31 0.86
830 6524 5.640357 CGAAAAACGCATTAGGCCCTATATA 59.360 40.000 0.00 0.00 40.31 0.86
831 6525 6.183360 CGAAAAACGCATTAGGCCCTATATAG 60.183 42.308 0.00 2.46 40.31 1.31
832 6526 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
833 6527 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
834 6528 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
835 6529 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
836 6530 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
837 6531 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
838 6532 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
839 6533 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
840 6534 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
841 6535 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
842 6536 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
843 6537 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
844 6538 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
845 6539 5.463154 CCCTATATAGATGGAAGGAGGGAG 58.537 50.000 11.53 0.00 44.48 4.30
846 6540 5.042979 CCCTATATAGATGGAAGGAGGGAGT 60.043 48.000 11.53 0.00 44.48 3.85
847 6541 6.162420 CCCTATATAGATGGAAGGAGGGAGTA 59.838 46.154 11.53 0.00 44.48 2.59
877 6615 8.236585 TGCATTGTATTTATGGCTATTCTGTT 57.763 30.769 0.00 0.00 0.00 3.16
1021 6778 4.357325 CATGCCTCCCCTCTACATACTAT 58.643 47.826 0.00 0.00 0.00 2.12
1675 9348 1.377202 GGGATTGTCCTCAAGCGCA 60.377 57.895 11.47 0.00 46.84 6.09
1893 9578 3.242867 AGACATCTCTGGTCAGGTCAAA 58.757 45.455 0.00 0.00 37.74 2.69
1923 9608 1.172812 GGTCACAAGCCAACCAGTCC 61.173 60.000 0.00 0.00 33.11 3.85
2014 9717 1.647346 CAATGGCATTGCACATCCAC 58.353 50.000 25.69 0.00 32.92 4.02
2088 9791 2.035632 GAGGATCGAACAGGAGGATGT 58.964 52.381 0.00 0.00 33.96 3.06
2228 9934 1.001293 TGTTGCTACCACTCAGAGCAG 59.999 52.381 0.00 0.00 46.29 4.24
2437 14942 3.011818 AGAAAACCAAACGTCGGAGTTT 58.988 40.909 10.75 9.63 44.27 2.66
3009 22106 3.321111 GCCGGAGAACATACTTCTGGATA 59.679 47.826 5.05 0.00 0.00 2.59
3197 22295 6.070881 TGGTTTTGTTGGAAATCATATCTGGG 60.071 38.462 0.00 0.00 0.00 4.45
3231 22329 4.568359 CCTCACCTGAAGAATCATACAACG 59.432 45.833 0.00 0.00 34.37 4.10
3410 22529 5.991328 TCCAAGATAATGAGTTTGATCGC 57.009 39.130 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 3.081061 AGCGCCATCACAGAAATACAAA 58.919 40.909 2.29 0.00 0.00 2.83
106 107 0.967380 CCTCCCTGAAAAAGCGCCAT 60.967 55.000 2.29 0.00 0.00 4.40
156 172 4.492895 CGCATGGTTGAGCATTAAAAATGC 60.493 41.667 15.14 15.14 44.85 3.56
171 187 2.818130 ATTTGCTTCAACGCATGGTT 57.182 40.000 0.00 0.00 40.04 3.67
179 195 6.859420 AACCCACAAAATATTTGCTTCAAC 57.141 33.333 0.39 0.00 0.00 3.18
197 213 8.542080 TCTTCGAATATAACCTTTCTAAACCCA 58.458 33.333 0.00 0.00 0.00 4.51
198 214 8.953368 TCTTCGAATATAACCTTTCTAAACCC 57.047 34.615 0.00 0.00 0.00 4.11
352 6046 5.042979 ACCCTATATAGATGGAAGGAGGGAG 60.043 48.000 11.53 0.00 44.48 4.30
353 6047 4.870361 ACCCTATATAGATGGAAGGAGGGA 59.130 45.833 11.53 0.00 44.48 4.20
354 6048 5.227917 ACCCTATATAGATGGAAGGAGGG 57.772 47.826 11.53 4.91 46.66 4.30
355 6049 8.680820 TTAAACCCTATATAGATGGAAGGAGG 57.319 38.462 11.53 3.20 0.00 4.30
357 6051 9.629649 ACATTAAACCCTATATAGATGGAAGGA 57.370 33.333 11.53 0.00 0.00 3.36
358 6052 9.672673 CACATTAAACCCTATATAGATGGAAGG 57.327 37.037 11.53 5.26 0.00 3.46
386 6080 8.441312 ACAATAGTCAAAGACGGTCTTAAAAA 57.559 30.769 22.67 9.07 35.27 1.94
387 6081 8.080083 GACAATAGTCAAAGACGGTCTTAAAA 57.920 34.615 22.67 9.31 44.34 1.52
388 6082 7.647907 GACAATAGTCAAAGACGGTCTTAAA 57.352 36.000 22.67 11.65 44.34 1.52
417 6111 9.733219 CACATTGTGCATGTCATGTATTATTAA 57.267 29.630 14.26 3.23 43.17 1.40
418 6112 9.118300 TCACATTGTGCATGTCATGTATTATTA 57.882 29.630 14.26 0.00 43.17 0.98
419 6113 7.998580 TCACATTGTGCATGTCATGTATTATT 58.001 30.769 14.26 0.00 43.17 1.40
420 6114 7.571080 TCACATTGTGCATGTCATGTATTAT 57.429 32.000 14.26 5.08 43.17 1.28
421 6115 6.998968 TCACATTGTGCATGTCATGTATTA 57.001 33.333 14.26 3.02 43.17 0.98
422 6116 5.900865 TCACATTGTGCATGTCATGTATT 57.099 34.783 14.26 0.00 43.17 1.89
423 6117 5.900865 TTCACATTGTGCATGTCATGTAT 57.099 34.783 14.26 1.30 43.17 2.29
424 6118 5.702349 TTTCACATTGTGCATGTCATGTA 57.298 34.783 14.26 7.11 43.17 2.29
425 6119 4.587584 TTTCACATTGTGCATGTCATGT 57.412 36.364 14.26 0.00 43.17 3.21
426 6120 6.474819 AATTTTCACATTGTGCATGTCATG 57.525 33.333 12.04 8.56 43.17 3.07
428 6122 9.518906 GATATAATTTTCACATTGTGCATGTCA 57.481 29.630 12.04 0.00 43.17 3.58
429 6123 9.518906 TGATATAATTTTCACATTGTGCATGTC 57.481 29.630 12.04 6.55 43.17 3.06
449 6143 9.230122 TGTGTGAAAGAAGCTTTCAATGATATA 57.770 29.630 20.38 4.87 39.76 0.86
450 6144 8.025445 GTGTGTGAAAGAAGCTTTCAATGATAT 58.975 33.333 20.38 0.00 39.76 1.63
451 6145 7.362662 GTGTGTGAAAGAAGCTTTCAATGATA 58.637 34.615 20.38 7.02 39.76 2.15
452 6146 6.211515 GTGTGTGAAAGAAGCTTTCAATGAT 58.788 36.000 20.38 0.00 39.76 2.45
453 6147 5.581605 GTGTGTGAAAGAAGCTTTCAATGA 58.418 37.500 20.38 8.24 39.76 2.57
454 6148 4.438797 CGTGTGTGAAAGAAGCTTTCAATG 59.561 41.667 20.38 9.86 39.76 2.82
455 6149 4.335315 TCGTGTGTGAAAGAAGCTTTCAAT 59.665 37.500 20.38 0.00 39.76 2.57
456 6150 3.687212 TCGTGTGTGAAAGAAGCTTTCAA 59.313 39.130 20.38 10.74 39.76 2.69
457 6151 3.266636 TCGTGTGTGAAAGAAGCTTTCA 58.733 40.909 16.21 16.21 36.21 2.69
458 6152 3.944422 TCGTGTGTGAAAGAAGCTTTC 57.056 42.857 0.00 11.83 0.00 2.62
459 6153 4.900635 ATTCGTGTGTGAAAGAAGCTTT 57.099 36.364 0.00 0.00 0.00 3.51
460 6154 4.900635 AATTCGTGTGTGAAAGAAGCTT 57.099 36.364 0.00 0.00 0.00 3.74
461 6155 4.900635 AAATTCGTGTGTGAAAGAAGCT 57.099 36.364 0.00 0.00 0.00 3.74
462 6156 5.968848 TGTTAAATTCGTGTGTGAAAGAAGC 59.031 36.000 0.00 0.00 0.00 3.86
463 6157 7.164171 CACTGTTAAATTCGTGTGTGAAAGAAG 59.836 37.037 0.00 0.00 0.00 2.85
464 6158 6.964370 CACTGTTAAATTCGTGTGTGAAAGAA 59.036 34.615 0.00 0.00 0.00 2.52
465 6159 6.092944 ACACTGTTAAATTCGTGTGTGAAAGA 59.907 34.615 0.00 0.00 38.99 2.52
466 6160 6.255215 ACACTGTTAAATTCGTGTGTGAAAG 58.745 36.000 0.00 0.00 38.99 2.62
467 6161 6.184580 ACACTGTTAAATTCGTGTGTGAAA 57.815 33.333 0.00 0.00 38.99 2.69
468 6162 5.804692 ACACTGTTAAATTCGTGTGTGAA 57.195 34.783 0.00 0.00 38.99 3.18
473 6167 4.893424 AAGCACACTGTTAAATTCGTGT 57.107 36.364 0.00 0.00 40.91 4.49
474 6168 5.034152 ACAAAGCACACTGTTAAATTCGTG 58.966 37.500 0.00 0.00 0.00 4.35
475 6169 5.034152 CACAAAGCACACTGTTAAATTCGT 58.966 37.500 0.00 0.00 0.00 3.85
476 6170 5.034152 ACACAAAGCACACTGTTAAATTCG 58.966 37.500 0.00 0.00 0.00 3.34
477 6171 7.700656 ACTTACACAAAGCACACTGTTAAATTC 59.299 33.333 0.00 0.00 38.93 2.17
478 6172 7.543756 ACTTACACAAAGCACACTGTTAAATT 58.456 30.769 0.00 0.00 38.93 1.82
479 6173 7.095695 ACTTACACAAAGCACACTGTTAAAT 57.904 32.000 0.00 0.00 38.93 1.40
480 6174 6.503589 ACTTACACAAAGCACACTGTTAAA 57.496 33.333 0.00 0.00 38.93 1.52
481 6175 6.318628 CAACTTACACAAAGCACACTGTTAA 58.681 36.000 0.00 0.00 38.93 2.01
482 6176 5.675071 GCAACTTACACAAAGCACACTGTTA 60.675 40.000 0.00 0.00 38.93 2.41
483 6177 4.732784 CAACTTACACAAAGCACACTGTT 58.267 39.130 0.00 0.00 38.93 3.16
484 6178 3.427503 GCAACTTACACAAAGCACACTGT 60.428 43.478 0.00 0.00 38.93 3.55
485 6179 3.108144 GCAACTTACACAAAGCACACTG 58.892 45.455 0.00 0.00 38.93 3.66
486 6180 2.752354 TGCAACTTACACAAAGCACACT 59.248 40.909 0.00 0.00 38.93 3.55
487 6181 3.143807 TGCAACTTACACAAAGCACAC 57.856 42.857 0.00 0.00 38.93 3.82
488 6182 3.130164 ACATGCAACTTACACAAAGCACA 59.870 39.130 0.00 0.00 38.93 4.57
489 6183 3.705604 ACATGCAACTTACACAAAGCAC 58.294 40.909 0.00 0.00 38.93 4.40
490 6184 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
491 6185 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
495 6189 9.830975 AGTAATATATGACATGCAACTTACACA 57.169 29.630 2.94 0.00 0.00 3.72
497 6191 9.489084 GGAGTAATATATGACATGCAACTTACA 57.511 33.333 2.94 0.00 0.00 2.41
498 6192 8.936864 GGGAGTAATATATGACATGCAACTTAC 58.063 37.037 2.94 0.33 0.00 2.34
499 6193 8.880244 AGGGAGTAATATATGACATGCAACTTA 58.120 33.333 2.94 0.00 0.00 2.24
500 6194 7.749666 AGGGAGTAATATATGACATGCAACTT 58.250 34.615 2.94 0.00 0.00 2.66
501 6195 7.321717 AGGGAGTAATATATGACATGCAACT 57.678 36.000 2.94 0.00 0.00 3.16
502 6196 7.986085 AAGGGAGTAATATATGACATGCAAC 57.014 36.000 2.94 0.00 0.00 4.17
503 6197 7.998383 ACAAAGGGAGTAATATATGACATGCAA 59.002 33.333 2.94 0.00 0.00 4.08
504 6198 7.517320 ACAAAGGGAGTAATATATGACATGCA 58.483 34.615 2.94 0.00 0.00 3.96
505 6199 7.986085 ACAAAGGGAGTAATATATGACATGC 57.014 36.000 2.94 0.00 0.00 4.06
516 6210 8.857098 GGACTAAAAAGAAACAAAGGGAGTAAT 58.143 33.333 0.00 0.00 0.00 1.89
517 6211 7.012610 CGGACTAAAAAGAAACAAAGGGAGTAA 59.987 37.037 0.00 0.00 0.00 2.24
518 6212 6.484308 CGGACTAAAAAGAAACAAAGGGAGTA 59.516 38.462 0.00 0.00 0.00 2.59
519 6213 5.298527 CGGACTAAAAAGAAACAAAGGGAGT 59.701 40.000 0.00 0.00 0.00 3.85
520 6214 5.758924 CGGACTAAAAAGAAACAAAGGGAG 58.241 41.667 0.00 0.00 0.00 4.30
521 6215 4.037089 GCGGACTAAAAAGAAACAAAGGGA 59.963 41.667 0.00 0.00 0.00 4.20
522 6216 4.202070 TGCGGACTAAAAAGAAACAAAGGG 60.202 41.667 0.00 0.00 0.00 3.95
523 6217 4.927422 TGCGGACTAAAAAGAAACAAAGG 58.073 39.130 0.00 0.00 0.00 3.11
524 6218 9.834628 TTATATGCGGACTAAAAAGAAACAAAG 57.165 29.630 0.00 0.00 0.00 2.77
525 6219 9.834628 CTTATATGCGGACTAAAAAGAAACAAA 57.165 29.630 0.00 0.00 0.00 2.83
526 6220 8.455682 CCTTATATGCGGACTAAAAAGAAACAA 58.544 33.333 0.00 0.00 0.00 2.83
527 6221 7.608761 ACCTTATATGCGGACTAAAAAGAAACA 59.391 33.333 0.00 0.00 0.00 2.83
528 6222 7.982224 ACCTTATATGCGGACTAAAAAGAAAC 58.018 34.615 0.00 0.00 0.00 2.78
529 6223 8.570068 AACCTTATATGCGGACTAAAAAGAAA 57.430 30.769 0.00 0.00 0.00 2.52
530 6224 8.455682 CAAACCTTATATGCGGACTAAAAAGAA 58.544 33.333 0.00 0.00 0.00 2.52
531 6225 7.066525 CCAAACCTTATATGCGGACTAAAAAGA 59.933 37.037 0.00 0.00 0.00 2.52
532 6226 7.148137 ACCAAACCTTATATGCGGACTAAAAAG 60.148 37.037 0.00 0.00 0.00 2.27
533 6227 6.660094 ACCAAACCTTATATGCGGACTAAAAA 59.340 34.615 0.00 0.00 0.00 1.94
534 6228 6.181908 ACCAAACCTTATATGCGGACTAAAA 58.818 36.000 0.00 0.00 0.00 1.52
535 6229 5.747342 ACCAAACCTTATATGCGGACTAAA 58.253 37.500 0.00 0.00 0.00 1.85
536 6230 5.104859 TGACCAAACCTTATATGCGGACTAA 60.105 40.000 0.00 0.00 0.00 2.24
537 6231 4.406326 TGACCAAACCTTATATGCGGACTA 59.594 41.667 0.00 0.00 0.00 2.59
538 6232 3.199071 TGACCAAACCTTATATGCGGACT 59.801 43.478 0.00 0.00 0.00 3.85
539 6233 3.537580 TGACCAAACCTTATATGCGGAC 58.462 45.455 0.00 0.00 0.00 4.79
540 6234 3.916359 TGACCAAACCTTATATGCGGA 57.084 42.857 0.00 0.00 0.00 5.54
541 6235 4.398044 ACTTTGACCAAACCTTATATGCGG 59.602 41.667 0.00 0.00 0.00 5.69
542 6236 5.123186 TGACTTTGACCAAACCTTATATGCG 59.877 40.000 0.00 0.00 0.00 4.73
543 6237 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
544 6238 7.029563 GCTTGACTTTGACCAAACCTTATATG 58.970 38.462 0.00 0.00 0.00 1.78
545 6239 6.948309 AGCTTGACTTTGACCAAACCTTATAT 59.052 34.615 0.00 0.00 0.00 0.86
546 6240 6.303839 AGCTTGACTTTGACCAAACCTTATA 58.696 36.000 0.00 0.00 0.00 0.98
547 6241 5.140454 AGCTTGACTTTGACCAAACCTTAT 58.860 37.500 0.00 0.00 0.00 1.73
548 6242 4.532834 AGCTTGACTTTGACCAAACCTTA 58.467 39.130 0.00 0.00 0.00 2.69
549 6243 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
550 6244 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
551 6245 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
562 6256 9.516314 GTTAGTCAAATTTTACAAAGCTTGACT 57.484 29.630 23.05 23.05 44.64 3.41
563 6257 9.516314 AGTTAGTCAAATTTTACAAAGCTTGAC 57.484 29.630 0.00 15.93 39.30 3.18
621 6315 9.304335 ACATGGCATCTGATAATATTGATTTCA 57.696 29.630 0.00 0.00 0.00 2.69
624 6318 8.900781 GCTACATGGCATCTGATAATATTGATT 58.099 33.333 0.00 0.00 0.00 2.57
625 6319 7.226128 CGCTACATGGCATCTGATAATATTGAT 59.774 37.037 0.00 0.00 0.00 2.57
626 6320 6.536224 CGCTACATGGCATCTGATAATATTGA 59.464 38.462 0.00 0.00 0.00 2.57
627 6321 6.314648 ACGCTACATGGCATCTGATAATATTG 59.685 38.462 0.00 0.00 0.00 1.90
628 6322 6.409704 ACGCTACATGGCATCTGATAATATT 58.590 36.000 0.00 0.00 0.00 1.28
629 6323 5.982356 ACGCTACATGGCATCTGATAATAT 58.018 37.500 0.00 0.00 0.00 1.28
630 6324 5.405935 ACGCTACATGGCATCTGATAATA 57.594 39.130 0.00 0.00 0.00 0.98
631 6325 4.277515 ACGCTACATGGCATCTGATAAT 57.722 40.909 0.00 0.00 0.00 1.28
632 6326 3.751479 ACGCTACATGGCATCTGATAA 57.249 42.857 0.00 0.00 0.00 1.75
633 6327 5.405935 AATACGCTACATGGCATCTGATA 57.594 39.130 0.00 0.00 0.00 2.15
634 6328 3.969287 ATACGCTACATGGCATCTGAT 57.031 42.857 0.00 0.00 0.00 2.90
635 6329 3.751479 AATACGCTACATGGCATCTGA 57.249 42.857 0.00 0.00 0.00 3.27
636 6330 4.273235 TGAAAATACGCTACATGGCATCTG 59.727 41.667 0.00 0.00 0.00 2.90
637 6331 4.450976 TGAAAATACGCTACATGGCATCT 58.549 39.130 0.00 0.00 0.00 2.90
638 6332 4.811555 TGAAAATACGCTACATGGCATC 57.188 40.909 0.00 0.00 0.00 3.91
639 6333 5.997746 AGTATGAAAATACGCTACATGGCAT 59.002 36.000 0.00 0.00 32.52 4.40
640 6334 5.364778 AGTATGAAAATACGCTACATGGCA 58.635 37.500 0.00 0.00 32.52 4.92
641 6335 5.924475 AGTATGAAAATACGCTACATGGC 57.076 39.130 0.00 0.00 32.52 4.40
714 6408 6.207810 TGGTCAAAGTCAAACTACACAAAGTT 59.792 34.615 0.00 0.00 41.46 2.66
715 6409 5.708230 TGGTCAAAGTCAAACTACACAAAGT 59.292 36.000 0.00 0.00 0.00 2.66
716 6410 6.189677 TGGTCAAAGTCAAACTACACAAAG 57.810 37.500 0.00 0.00 0.00 2.77
717 6411 6.576662 TTGGTCAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 0.00 2.83
718 6412 6.576662 TTTGGTCAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 0.00 3.33
719 6413 6.601613 AGATTTGGTCAAAGTCAAACTACACA 59.398 34.615 2.55 0.00 35.97 3.72
720 6414 7.027778 AGATTTGGTCAAAGTCAAACTACAC 57.972 36.000 2.55 0.00 35.97 2.90
721 6415 7.639113 AAGATTTGGTCAAAGTCAAACTACA 57.361 32.000 2.55 0.00 35.97 2.74
725 6419 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
726 6420 7.967854 CGCATATAAGATTTGGTCAAAGTCAAA 59.032 33.333 2.55 0.00 37.29 2.69
727 6421 7.415095 CCGCATATAAGATTTGGTCAAAGTCAA 60.415 37.037 2.55 0.00 33.32 3.18
728 6422 6.038161 CCGCATATAAGATTTGGTCAAAGTCA 59.962 38.462 2.55 0.00 33.32 3.41
729 6423 6.260050 TCCGCATATAAGATTTGGTCAAAGTC 59.740 38.462 2.55 1.51 33.32 3.01
730 6424 6.119536 TCCGCATATAAGATTTGGTCAAAGT 58.880 36.000 2.55 0.00 33.32 2.66
731 6425 6.260936 ACTCCGCATATAAGATTTGGTCAAAG 59.739 38.462 2.55 0.00 33.32 2.77
732 6426 6.038161 CACTCCGCATATAAGATTTGGTCAAA 59.962 38.462 0.00 0.00 34.46 2.69
733 6427 5.527214 CACTCCGCATATAAGATTTGGTCAA 59.473 40.000 0.00 0.00 0.00 3.18
734 6428 5.056480 CACTCCGCATATAAGATTTGGTCA 58.944 41.667 0.00 0.00 0.00 4.02
735 6429 5.297547 TCACTCCGCATATAAGATTTGGTC 58.702 41.667 0.00 0.00 0.00 4.02
736 6430 5.290493 TCACTCCGCATATAAGATTTGGT 57.710 39.130 0.00 0.00 0.00 3.67
737 6431 6.618287 TTTCACTCCGCATATAAGATTTGG 57.382 37.500 0.00 0.00 0.00 3.28
738 6432 7.919690 TCTTTTCACTCCGCATATAAGATTTG 58.080 34.615 0.00 0.00 0.00 2.32
739 6433 8.506168 TTCTTTTCACTCCGCATATAAGATTT 57.494 30.769 0.00 0.00 0.00 2.17
740 6434 8.398665 GTTTCTTTTCACTCCGCATATAAGATT 58.601 33.333 0.00 0.00 0.00 2.40
741 6435 7.254455 CGTTTCTTTTCACTCCGCATATAAGAT 60.254 37.037 0.00 0.00 0.00 2.40
742 6436 6.035650 CGTTTCTTTTCACTCCGCATATAAGA 59.964 38.462 0.00 0.00 0.00 2.10
743 6437 6.185399 CGTTTCTTTTCACTCCGCATATAAG 58.815 40.000 0.00 0.00 0.00 1.73
744 6438 5.064198 CCGTTTCTTTTCACTCCGCATATAA 59.936 40.000 0.00 0.00 0.00 0.98
745 6439 4.569162 CCGTTTCTTTTCACTCCGCATATA 59.431 41.667 0.00 0.00 0.00 0.86
746 6440 3.374058 CCGTTTCTTTTCACTCCGCATAT 59.626 43.478 0.00 0.00 0.00 1.78
747 6441 2.739913 CCGTTTCTTTTCACTCCGCATA 59.260 45.455 0.00 0.00 0.00 3.14
748 6442 1.535462 CCGTTTCTTTTCACTCCGCAT 59.465 47.619 0.00 0.00 0.00 4.73
749 6443 0.941542 CCGTTTCTTTTCACTCCGCA 59.058 50.000 0.00 0.00 0.00 5.69
750 6444 1.194772 CTCCGTTTCTTTTCACTCCGC 59.805 52.381 0.00 0.00 0.00 5.54
751 6445 1.798813 CCTCCGTTTCTTTTCACTCCG 59.201 52.381 0.00 0.00 0.00 4.63
752 6446 2.152016 CCCTCCGTTTCTTTTCACTCC 58.848 52.381 0.00 0.00 0.00 3.85
753 6447 3.067833 CTCCCTCCGTTTCTTTTCACTC 58.932 50.000 0.00 0.00 0.00 3.51
754 6448 2.438392 ACTCCCTCCGTTTCTTTTCACT 59.562 45.455 0.00 0.00 0.00 3.41
755 6449 2.847441 ACTCCCTCCGTTTCTTTTCAC 58.153 47.619 0.00 0.00 0.00 3.18
756 6450 4.903045 ATACTCCCTCCGTTTCTTTTCA 57.097 40.909 0.00 0.00 0.00 2.69
757 6451 4.142665 GCAATACTCCCTCCGTTTCTTTTC 60.143 45.833 0.00 0.00 0.00 2.29
758 6452 3.756963 GCAATACTCCCTCCGTTTCTTTT 59.243 43.478 0.00 0.00 0.00 2.27
759 6453 3.009143 AGCAATACTCCCTCCGTTTCTTT 59.991 43.478 0.00 0.00 0.00 2.52
760 6454 2.572104 AGCAATACTCCCTCCGTTTCTT 59.428 45.455 0.00 0.00 0.00 2.52
761 6455 2.188817 AGCAATACTCCCTCCGTTTCT 58.811 47.619 0.00 0.00 0.00 2.52
762 6456 2.693267 AGCAATACTCCCTCCGTTTC 57.307 50.000 0.00 0.00 0.00 2.78
763 6457 3.434940 AAAGCAATACTCCCTCCGTTT 57.565 42.857 0.00 0.00 0.00 3.60
764 6458 3.518303 ACTAAAGCAATACTCCCTCCGTT 59.482 43.478 0.00 0.00 0.00 4.44
765 6459 3.105283 ACTAAAGCAATACTCCCTCCGT 58.895 45.455 0.00 0.00 0.00 4.69
766 6460 3.821421 ACTAAAGCAATACTCCCTCCG 57.179 47.619 0.00 0.00 0.00 4.63
767 6461 6.486993 CCAAATACTAAAGCAATACTCCCTCC 59.513 42.308 0.00 0.00 0.00 4.30
768 6462 7.054751 ACCAAATACTAAAGCAATACTCCCTC 58.945 38.462 0.00 0.00 0.00 4.30
769 6463 6.970191 ACCAAATACTAAAGCAATACTCCCT 58.030 36.000 0.00 0.00 0.00 4.20
770 6464 6.826741 TGACCAAATACTAAAGCAATACTCCC 59.173 38.462 0.00 0.00 0.00 4.30
771 6465 7.859325 TGACCAAATACTAAAGCAATACTCC 57.141 36.000 0.00 0.00 0.00 3.85
772 6466 9.774742 CTTTGACCAAATACTAAAGCAATACTC 57.225 33.333 0.00 0.00 0.00 2.59
773 6467 9.297037 ACTTTGACCAAATACTAAAGCAATACT 57.703 29.630 0.00 0.00 32.97 2.12
774 6468 9.908152 AACTTTGACCAAATACTAAAGCAATAC 57.092 29.630 0.00 0.00 32.97 1.89
777 6471 8.079809 GCTAACTTTGACCAAATACTAAAGCAA 58.920 33.333 0.00 0.00 32.97 3.91
778 6472 7.308951 GGCTAACTTTGACCAAATACTAAAGCA 60.309 37.037 0.00 0.00 32.97 3.91
779 6473 7.027760 GGCTAACTTTGACCAAATACTAAAGC 58.972 38.462 0.00 0.00 32.97 3.51
780 6474 8.336801 AGGCTAACTTTGACCAAATACTAAAG 57.663 34.615 0.00 0.00 35.18 1.85
781 6475 7.118680 CGAGGCTAACTTTGACCAAATACTAAA 59.881 37.037 0.00 0.00 0.00 1.85
782 6476 6.592607 CGAGGCTAACTTTGACCAAATACTAA 59.407 38.462 0.00 0.00 0.00 2.24
783 6477 6.071221 TCGAGGCTAACTTTGACCAAATACTA 60.071 38.462 0.00 0.00 0.00 1.82
784 6478 4.935808 CGAGGCTAACTTTGACCAAATACT 59.064 41.667 0.00 0.00 0.00 2.12
785 6479 4.933400 TCGAGGCTAACTTTGACCAAATAC 59.067 41.667 0.00 0.00 0.00 1.89
786 6480 5.155278 TCGAGGCTAACTTTGACCAAATA 57.845 39.130 0.00 0.00 0.00 1.40
787 6481 4.015872 TCGAGGCTAACTTTGACCAAAT 57.984 40.909 0.00 0.00 0.00 2.32
788 6482 3.478857 TCGAGGCTAACTTTGACCAAA 57.521 42.857 0.00 0.00 0.00 3.28
789 6483 3.478857 TTCGAGGCTAACTTTGACCAA 57.521 42.857 0.00 0.00 0.00 3.67
790 6484 3.478857 TTTCGAGGCTAACTTTGACCA 57.521 42.857 0.00 0.00 0.00 4.02
791 6485 4.534168 GTTTTTCGAGGCTAACTTTGACC 58.466 43.478 0.00 0.00 0.00 4.02
792 6486 4.209112 CGTTTTTCGAGGCTAACTTTGAC 58.791 43.478 0.00 0.00 42.86 3.18
793 6487 3.303526 GCGTTTTTCGAGGCTAACTTTGA 60.304 43.478 0.00 0.00 42.86 2.69
794 6488 2.971261 GCGTTTTTCGAGGCTAACTTTG 59.029 45.455 0.00 0.00 42.86 2.77
795 6489 2.614983 TGCGTTTTTCGAGGCTAACTTT 59.385 40.909 0.00 0.00 42.86 2.66
796 6490 2.215196 TGCGTTTTTCGAGGCTAACTT 58.785 42.857 0.00 0.00 42.86 2.66
797 6491 1.873698 TGCGTTTTTCGAGGCTAACT 58.126 45.000 0.00 0.00 42.86 2.24
798 6492 2.894307 ATGCGTTTTTCGAGGCTAAC 57.106 45.000 0.00 0.00 42.86 2.34
799 6493 3.372822 CCTAATGCGTTTTTCGAGGCTAA 59.627 43.478 0.00 0.00 42.86 3.09
800 6494 2.933906 CCTAATGCGTTTTTCGAGGCTA 59.066 45.455 0.00 0.00 42.86 3.93
801 6495 1.737793 CCTAATGCGTTTTTCGAGGCT 59.262 47.619 0.00 0.00 42.86 4.58
802 6496 1.794076 GCCTAATGCGTTTTTCGAGGC 60.794 52.381 12.47 12.47 44.30 4.70
803 6497 1.202143 GGCCTAATGCGTTTTTCGAGG 60.202 52.381 0.00 0.00 42.61 4.63
804 6498 1.202143 GGGCCTAATGCGTTTTTCGAG 60.202 52.381 0.84 0.00 42.61 4.04
805 6499 0.806241 GGGCCTAATGCGTTTTTCGA 59.194 50.000 0.84 0.00 42.61 3.71
806 6500 0.808755 AGGGCCTAATGCGTTTTTCG 59.191 50.000 2.82 0.00 42.61 3.46
807 6501 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
808 6502 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
809 6503 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
810 6504 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
811 6505 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
812 6506 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
813 6507 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
814 6508 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
815 6509 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
816 6510 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
817 6511 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
818 6512 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
819 6513 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
820 6514 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
821 6515 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
822 6516 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
823 6517 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
824 6518 6.775629 GCTACTCCCTCCTTCCATCTATATAG 59.224 46.154 3.10 3.10 0.00 1.31
825 6519 6.219772 TGCTACTCCCTCCTTCCATCTATATA 59.780 42.308 0.00 0.00 0.00 0.86
826 6520 5.016782 TGCTACTCCCTCCTTCCATCTATAT 59.983 44.000 0.00 0.00 0.00 0.86
827 6521 4.357097 TGCTACTCCCTCCTTCCATCTATA 59.643 45.833 0.00 0.00 0.00 1.31
828 6522 3.142977 TGCTACTCCCTCCTTCCATCTAT 59.857 47.826 0.00 0.00 0.00 1.98
829 6523 2.518407 TGCTACTCCCTCCTTCCATCTA 59.482 50.000 0.00 0.00 0.00 1.98
830 6524 1.292242 TGCTACTCCCTCCTTCCATCT 59.708 52.381 0.00 0.00 0.00 2.90
831 6525 1.414550 GTGCTACTCCCTCCTTCCATC 59.585 57.143 0.00 0.00 0.00 3.51
832 6526 1.008938 AGTGCTACTCCCTCCTTCCAT 59.991 52.381 0.00 0.00 0.00 3.41
833 6527 0.413832 AGTGCTACTCCCTCCTTCCA 59.586 55.000 0.00 0.00 0.00 3.53
834 6528 0.827368 CAGTGCTACTCCCTCCTTCC 59.173 60.000 0.00 0.00 0.00 3.46
835 6529 0.176910 GCAGTGCTACTCCCTCCTTC 59.823 60.000 8.18 0.00 0.00 3.46
836 6530 0.545309 TGCAGTGCTACTCCCTCCTT 60.545 55.000 17.60 0.00 0.00 3.36
837 6531 0.326048 ATGCAGTGCTACTCCCTCCT 60.326 55.000 17.60 0.00 0.00 3.69
838 6532 0.543749 AATGCAGTGCTACTCCCTCC 59.456 55.000 17.60 0.00 0.00 4.30
839 6533 1.065854 ACAATGCAGTGCTACTCCCTC 60.066 52.381 15.18 0.00 0.00 4.30
840 6534 0.987294 ACAATGCAGTGCTACTCCCT 59.013 50.000 15.18 0.00 0.00 4.20
841 6535 2.691409 TACAATGCAGTGCTACTCCC 57.309 50.000 15.18 0.00 0.00 4.30
842 6536 6.293626 CCATAAATACAATGCAGTGCTACTCC 60.294 42.308 15.18 0.00 0.00 3.85
843 6537 6.662616 CCATAAATACAATGCAGTGCTACTC 58.337 40.000 15.18 0.00 0.00 2.59
844 6538 5.009010 GCCATAAATACAATGCAGTGCTACT 59.991 40.000 15.18 0.00 0.00 2.57
845 6539 5.009010 AGCCATAAATACAATGCAGTGCTAC 59.991 40.000 15.18 0.00 0.00 3.58
846 6540 5.132502 AGCCATAAATACAATGCAGTGCTA 58.867 37.500 15.18 6.49 0.00 3.49
847 6541 3.956199 AGCCATAAATACAATGCAGTGCT 59.044 39.130 15.18 4.28 0.00 4.40
877 6615 4.770010 GGGGTCAATTAAGTTCACATTGGA 59.230 41.667 0.00 0.00 0.00 3.53
1021 6778 1.549170 GTACAAGAGGAGAAGCCCGAA 59.451 52.381 0.00 0.00 37.37 4.30
1560 9230 4.448210 GACTGAAACCAGTGACCTTGTTA 58.552 43.478 2.50 0.00 44.34 2.41
1893 9578 4.406456 TGGCTTGTGACCAAATATTCAGT 58.594 39.130 0.00 0.00 33.12 3.41
2014 9717 1.137872 GCTCTCCATACAGTCACAGGG 59.862 57.143 0.00 0.00 0.00 4.45
2088 9791 5.106869 GCAATGTAACGGTGTGTTTCTGATA 60.107 40.000 0.00 0.00 42.09 2.15
2228 9934 2.606725 CCGAGACATGCTTCTTCACATC 59.393 50.000 0.00 0.00 0.00 3.06
2437 14942 7.461182 AACCAATAATACTTGCAGCAGTAAA 57.539 32.000 2.47 0.00 32.90 2.01
3009 22106 6.265196 TCTGCAACTTTAGGAACAAATGATGT 59.735 34.615 0.00 0.00 46.82 3.06
3231 22329 2.174319 GGTTACCGCTGCTGCTAGC 61.174 63.158 8.10 8.10 42.82 3.42
3243 22344 9.197306 AGGGAAATATTTAACATTCTGGTTACC 57.803 33.333 0.00 0.00 33.23 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.